Title: Risk Metrics to Evaluating R Packages
Description: Facilities for assessing R packages against a number of metrics to
help quantify their robustness.
Author: R Validation Hub [aut],
Doug Kelkhoff [aut, cre],
Marly Gotti [aut],
Eli Miller [aut],
Kevin K [aut],
Yilong Zhang [aut],
Eric Milliman [aut],
Juliane Manitz [aut],
Mark Padgham [ctb],
PSI special interest group Application and Implementation of
Methodologies in Statistics [cph]
Maintainer: Doug Kelkhoff <doug.kelkhoff@gmail.com>
Diff between riskmetric versions 0.1.0 dated 2021-05-13 and 0.1.1 dated 2021-07-29
riskmetric-0.1.0/riskmetric/man/as_pkg_ref.Rd |only riskmetric-0.1.1/riskmetric/DESCRIPTION | 8 riskmetric-0.1.1/riskmetric/MD5 | 44 +- riskmetric-0.1.1/riskmetric/NAMESPACE | 1 riskmetric-0.1.1/riskmetric/NEWS.md | 5 riskmetric-0.1.1/riskmetric/R/pkg_cohort.R |only riskmetric-0.1.1/riskmetric/R/pkg_ref_cache_remote_checks.R | 25 - riskmetric-0.1.1/riskmetric/R/pkg_ref_class.R | 188 ++++++---- riskmetric-0.1.1/riskmetric/R/utils.R | 15 riskmetric-0.1.1/riskmetric/build/vignette.rds |binary riskmetric-0.1.1/riskmetric/inst/doc/extending-riskmetric.html | 69 +-- riskmetric-0.1.1/riskmetric/inst/doc/riskmetric.R | 7 riskmetric-0.1.1/riskmetric/inst/doc/riskmetric.Rmd | 7 riskmetric-0.1.1/riskmetric/inst/doc/riskmetric.html | 56 +- riskmetric-0.1.1/riskmetric/man/figures |only riskmetric-0.1.1/riskmetric/man/firstS3method.Rd | 2 riskmetric-0.1.1/riskmetric/man/get_pkg_ref_classes.Rd |only riskmetric-0.1.1/riskmetric/man/pkg_ref.Rd | 39 +- riskmetric-0.1.1/riskmetric/man/pkg_ref_class_hierarchy.Rd |only riskmetric-0.1.1/riskmetric/tests/testthat/setup_mock_web_requests.R | 19 - riskmetric-0.1.1/riskmetric/tests/testthat/setup_test_packages.R | 25 + riskmetric-0.1.1/riskmetric/tests/testthat/test_packages/pkgsourcegood/man/hello_world_test.Rd | 2 riskmetric-0.1.1/riskmetric/tests/testthat/test_pkg_ref.R | 89 ++-- riskmetric-0.1.1/riskmetric/tests/testthat/test_webmocks/data/cran_package_checks.html |only riskmetric-0.1.1/riskmetric/tests/testthat/test_webmocks/rebuild_webmocks.R | 4 riskmetric-0.1.1/riskmetric/vignettes/riskmetric.Rmd | 7 26 files changed, 392 insertions(+), 220 deletions(-)
Title: An Implementation of Isolation Forest
Description: Isolation forest is anomaly detection method introduced by the paper Isolation based Anomaly Detection (Liu, Ting and Zhou <doi:10.1145/2133360.2133363>).
Author: Komala Sheshachala Srikanth [aut, cre],
David Zimmermann [ctb]
Maintainer: Komala Sheshachala Srikanth <sri.teach@gmail.com>
Diff between solitude versions 1.1.1 dated 2020-09-17 and 1.1.3 dated 2021-07-29
solitude-1.1.1/solitude/README.md |only solitude-1.1.3/solitude/DESCRIPTION | 16 +++-- solitude-1.1.3/solitude/MD5 | 9 +-- solitude-1.1.3/solitude/NEWS.md | 4 + solitude-1.1.3/solitude/R/isolationForest_r6.R | 75 +++++++++++++++++-------- solitude-1.1.3/solitude/man/isolationForest.Rd | 59 +++++++++++++++---- 6 files changed, 116 insertions(+), 47 deletions(-)
Title: R Interface to 'Bloomberg Data License'
Description: R interface to access prices and market data with the
'Bloomberg Data License' service from
<https://www.bloomberg.com/professional/product/data-license/>.
As a prerequisite, a valid Data License from 'Bloomberg' is needed
together with the corresponding SFTP credentials and whitelisting
of the IP from which accessing the service.
This software and its author are in no way affiliated,
endorsed, or approved by 'Bloomberg' or any of its affiliates.
'Bloomberg' is a registered trademark.
Author: Emanuele Guidotti [aut, cre] (<https://orcid.org/0000-0002-8961-6623>)
Maintainer: Emanuele Guidotti <emanuele.guidotti@unine.ch>
Diff between RblDataLicense versions 0.2.3 dated 2020-09-20 and 0.2.4 dated 2021-07-29
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/core.R | 2 +- README.md | 4 ++-- inst/doc/RblDataLicense.Rmd | 2 +- inst/doc/RblDataLicense.html | 41 +++++++++++++++++++++++++++++++++++++---- man/RblConnect.Rd | 4 ++-- vignettes/RblDataLicense.Rmd | 2 +- 9 files changed, 60 insertions(+), 23 deletions(-)
More information about RblDataLicense at CRAN
Permanent link
Title: Collective Matrix Factorization for Recommender Systems
Description: Collective matrix factorization (a.k.a. multi-view or multi-way factorization,
Singh, Gordon, (2008) <doi:10.1145/1401890.1401969>) tries to approximate a matrix 'X' as the
product of two low-dimensional matrices aided with secondary information matrices about rows
and/or columns of 'X' which are also factorized using the same latent components.
The intended usage is for recommender systems, dimensionality reduction, and missing value imputation.
Implements extensions of the original model (Cortes, (2018) <arXiv:1809.00366>) and can produce
different factorizations such as the weighted 'implicit-feedback' model (Hu, Koren, Volinsky,
(2008) <doi:10.1109/ICDM.2008.22>), the 'weighted-lambda-regularization' model,
(Zhou, Wilkinson, Schreiber, Pan, (2008) <doi:10.1007/978-3-540-68880-8_32>),
or the enhanced model with 'implicit features' (Rendle, Zhang,
Koren, (2019) <arXiv:1905.01395>), with or without side information. Can use gradient-based
procedures or alternating-least squares procedures (Koren, Bell, Volinsky, (2009)
<doi:10.1109/MC.2009.263>), with either a Cholesky solver, a faster conjugate gradient solver
(Takacs, Pilaszy, Tikk, (2011) <doi:10.1145/2043932.2043987>), or a non-negative
coordinate descent solver (Franc, Hlavac, Navara, (2005) <doi:10.1007/11556121_50>),
providing efficient methods for sparse and dense data, and mixtures thereof.
Supports L1 and L2 regularization in the main models,
offers alternative most-popular and content-based models, and implements functionality
for cold-start recommendations and imputation of 2D data.
Author: David Cortes [aut, cre, cph],
Jorge Nocedal [cph] (Copyright holder of included LBFGS library),
Naoaki Okazaki [cph] (Copyright holder of included LBFGS library),
David Blackman [cph] (Copyright holder of original Xoshiro code),
Sebastiano Vigna [cph] (Copyright holder of original Xoshiro code)
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between cmfrec versions 3.1.2 dated 2021-06-28 and 3.2.1 dated 2021-07-29
DESCRIPTION | 25 + LICENSE | 2 MD5 | 55 +- R/factors.R | 3 R/factors_single.R | 2 R/fit.R | 117 ++++- R/helpers.R | 170 +++++--- R/impute.R | 17 R/items.R | 11 R/other.R | 2 R/predict.R | 20 - R/predict_new.R | 8 R/topN.R | 10 inst/COPYRIGHTS |only inst/doc/cmfrec_vignette.R | 12 inst/doc/cmfrec_vignette.Rmd | 12 inst/doc/cmfrec_vignette.html | 51 +- man/factors.Rd | 3 man/factors_single.Rd | 4 man/fit.Rd | 34 + man/imputeX.Rd | 13 src/Rwrapper.c | 60 ++- src/arithmetic_ansi.h | 2 src/cmfrec.h | 120 +++--- src/collective.c | 826 ++++++++++++++++++++++++++++-------------- src/common.c | 292 ++++++++++---- src/helpers.c | 551 +++++++++++++++++++++++----- src/offsets.c | 137 +++++- vignettes/cmfrec_vignette.Rmd | 12 29 files changed, 1801 insertions(+), 770 deletions(-)
Title: Solving Mixed Model Equations in R
Description: Structural multivariate-univariate linear mixed model solver for estimation of multiple random effects and unknown variance-covariance structures (i.e. heterogeneous and unstructured variance models) (Covarrubias-Pazaran, 2016 <doi:10.1371/journal.pone.0156744>; Maier et al., 2015 <doi:10.1016/j.ajhg.2014.12.006>). REML estimates can be obtained using the Direct-Inversion Newton-Raphson and Direct-Inversion Average Information algorithms. Designed for genomic prediction and genome wide association studies (GWAS), particularly focused in the p > n problem (more coefficients than observations) and dense known covariance structures for levels of random effects. Spatial models can also be fitted using the two-dimensional spline functionality available in sommer.
Author: Giovanny Covarrubias-Pazaran
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between sommer versions 4.1.3 dated 2021-04-05 and 4.1.4 dated 2021-07-29
CHANGELOG | 25 +++ DESCRIPTION | 10 - MD5 | 68 +++++----- R/FUN_utils.R | 28 ++-- R/FUN_vsgvs.R | 29 +++- R/GWAS.R | 5 R/RcppExports.R | 4 R/mmer.R | 17 ++ R/vpredict.R | 8 - inst/doc/v1.sommer.quick.start.R | 4 inst/doc/v1.sommer.quick.start.Rmd | 92 +++++++------- inst/doc/v1.sommer.quick.start.pdf |binary inst/doc/v2.sommer.changes.and.faqs.R | 2 inst/doc/v2.sommer.changes.and.faqs.Rmd | 118 +++++++++--------- inst/doc/v2.sommer.changes.and.faqs.pdf |binary inst/doc/v3.sommer.qg.R | 10 - inst/doc/v3.sommer.qg.Rmd | 90 +++++++------- inst/doc/v3.sommer.qg.pdf |binary inst/doc/v4.sommer.gxe.pdf |binary inst/doc/v5.sommer.vs.lme4.pdf |binary man/DT_cpdata.Rd | 31 +++- man/GWAS.Rd | 5 man/build.HMM.Rd | 10 - man/mmer.Rd | 8 - man/vs.Rd | 19 ++ src/MNR.cpp | 191 ++++++++++++++++++++---------- src/RcppExports.cpp | 10 - vignettes/v1.sommer.quick.start.Rmd | 92 +++++++------- vignettes/v1.sommer.quick.start.html | 97 ++++++++------- vignettes/v2.sommer.changes.and.faqs.Rmd | 118 +++++++++--------- vignettes/v2.sommer.changes.and.faqs.html | 117 ++++++++++-------- vignettes/v3.sommer.qg.Rmd | 90 +++++++------- vignettes/v3.sommer.qg.html | 168 +++++++++----------------- vignettes/v4.sommer.gxe.html | 4 vignettes/v5.sommer.vs.lme4.html | 4 35 files changed, 807 insertions(+), 667 deletions(-)
Title: Quantitative Analysis of Mass Spectrometry Data
Description: A complete analysis pipeline for matrix-assisted laser
desorption/ionization-time-of-flight (MALDI-TOF) and other
two-dimensional mass spectrometry data. In addition to commonly
used plotting and processing methods it includes distinctive
features, namely baseline subtraction methods such as
morphological filters (TopHat) or the statistics-sensitive
non-linear iterative peak-clipping algorithm (SNIP), peak
alignment using warping functions, handling of replicated
measurements as well as allowing spectra with different
resolutions.
Author: Sebastian Gibb [aut, cre] (<https://orcid.org/0000-0001-7406-4443>),
Korbinian Strimmer [ths] (<https://orcid.org/0000-0001-7917-2056>)
Maintainer: Sebastian Gibb <mail@sebastiangibb.de>
Diff between MALDIquant versions 1.19.3 dated 2019-05-12 and 1.20 dated 2021-07-29
DESCRIPTION | 14 ++-- MD5 | 92 ++++++++++++++--------------- NAMESPACE | 3 NEWS | 35 ++++++++++- R/binPeaks-functions.R | 13 ++-- R/determineWarpingFunctions-functions.R | 2 R/grouper-functions.R | 17 +++-- R/referencePeaks-functions.R | 2 build/vignette.rds |binary inst/CITATION | 4 - inst/doc/MALDIquant-intro.R | 50 +++++++-------- inst/doc/MALDIquant-intro.pdf |binary man/AbstractMassObject-class.Rd | 2 man/MALDIquant-package.Rd | 8 +- man/MALDIquant-parallel.Rd | 3 man/MassPeaks-class.Rd | 2 man/MassSpectrum-class.Rd | 2 man/alignSpectra-functions.Rd | 2 man/averageMassSpectra-functions.Rd | 2 man/binPeaks-functions.Rd | 27 ++++++-- man/calibrateIntensity-methods.Rd | 2 man/createMassPeaks-functions.Rd | 2 man/createMassSpectrum-functions.Rd | 2 man/detectPeaks-methods.Rd | 2 man/determineWarpingFunctions-functions.Rd | 2 man/estimateBaseline-methods.Rd | 2 man/estimateNoise-methods.Rd | 2 man/fiedler2009subset.Rd | 6 - man/filterPeaks-functions.Rd | 2 man/findEmptyMassObjects-functions.Rd | 2 man/intensityMatrix-functions.Rd | 2 man/isMassObject-functions.Rd | 2 man/isMassObjectList-functions.Rd | 2 man/labelPeaks-methods.Rd | 2 man/mergeMassPeaks-functions.Rd | 2 man/monoisotopicPeaks-methods.Rd | 2 man/msiSlices-functions.Rd | 2 man/plot-methods.Rd | 2 man/plotMsiSlice-methods.Rd | 2 man/referencePeaks-functions.Rd | 2 man/removeBaseline-methods.Rd | 2 man/smoothIntensity-methods.Rd | 2 man/transformIntensity-methods.Rd | 2 man/trim-methods.Rd | 2 man/warp-functions.Rd | 2 tests/testthat/test_binPeaks-functions.R | 9 ++ tests/testthat/test_grouper-functions.R | 11 ++- 47 files changed, 214 insertions(+), 140 deletions(-)
Title: Maps, Data and Methods Related to Guerry (1833) "Moral
Statistics of France"
Description: Maps of France in 1830, multivariate datasets from A.-M. Guerry and others, and statistical and
graphic methods related to Guerry's "Moral Statistics of France". The goal is to facilitate the exploration and
development of statistical and graphic methods for multivariate data in a geo-spatial context of historical interest.
Author: Michael Friendly [aut, cre],
Stephane Dray [aut]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between Guerry versions 1.7.0 dated 2020-01-29 and 1.7.1 dated 2021-07-29
DESCRIPTION | 13 +++++++---- MD5 | 22 ++++++++++++++----- build/partial.rdb |binary build/vignette.rds |only inst |only man/Guerry-package.Rd | 4 +-- man/Guerry.Rd | 57 ++++++++++++++++++++++++++++++++++++++++++-------- man/gfrance.Rd | 3 +- vignettes |only 9 files changed, 77 insertions(+), 22 deletions(-)
Title: Analyzing the Opinions in a Big Text Document
Description: Designed for performing impact analysis of
opinions in a digital text document (DTD). The
package allows a user to assess the extent to which a theme
or subject within a document impacts the overall opinion
expressed in the document. The package can be applied to a wide
range of opinion-based DTD, including commentaries on social media
platforms (such as 'Facebook', 'Twitter' and 'Youtube'),
online products reviews, and so on.
The utility of 'opitools' was originally demonstrated
in Adepeju and Jimoh (2021) <doi:10.31235/osf.io/c32qh> in the
assessment of COVID-19 impacts on neighbourhood policing using
Twitter data. Further examples can be found in the vignette of
the package.
Author: Monsuru Adepeju [cre, aut],
Maintainer: Monsuru Adepeju <monsuur2010@yahoo.com>
Diff between opitools versions 1.0.2 dated 2021-03-05 and 1.8.0 dated 2021-07-29
opitools-1.0.2/opitools/R/covid_keys.R |only opitools-1.0.2/opitools/R/osd_data.R |only opitools-1.0.2/opitools/R/policing_otd.R |only opitools-1.0.2/opitools/R/tweets.R |only opitools-1.0.2/opitools/data/covid_keys.rda |only opitools-1.0.2/opitools/data/policing_otd.rda |only opitools-1.0.2/opitools/man/covid_keys.Rd |only opitools-1.0.2/opitools/man/policing_otd.Rd |only opitools-1.8.0/opitools/DESCRIPTION | 34 opitools-1.8.0/opitools/MD5 | 67 - opitools-1.8.0/opitools/NAMESPACE | 123 + opitools-1.8.0/opitools/NEWS.md | 16 opitools-1.8.0/opitools/R/data.R |only opitools-1.8.0/opitools/R/opi_impact.R | 78 - opitools-1.8.0/opitools/R/opi_score.R | 24 opitools-1.8.0/opitools/R/opi_sim.R | 16 opitools-1.8.0/opitools/R/word_distrib.R | 4 opitools-1.8.0/opitools/R/word_imp.R |only opitools-1.8.0/opitools/README.md | 98 - opitools-1.8.0/opitools/build/vignette.rds |binary opitools-1.8.0/opitools/data/covid_theme.rda |only opitools-1.8.0/opitools/data/debate_dtd.rda |only opitools-1.8.0/opitools/data/policing_dtd.rda |only opitools-1.8.0/opitools/data/refreshment_theme.rda |only opitools-1.8.0/opitools/data/reviews_dtd.rda |only opitools-1.8.0/opitools/data/signage_theme.rda |only opitools-1.8.0/opitools/inst/doc/opitools-vignette.R | 309 ++--- opitools-1.8.0/opitools/inst/doc/opitools-vignette.Rmd | 401 +++--- opitools-1.8.0/opitools/inst/doc/opitools-vignette.html | 986 ++++++++++++---- opitools-1.8.0/opitools/man/covid_theme.Rd |only opitools-1.8.0/opitools/man/debate_dtd.Rd |only opitools-1.8.0/opitools/man/opi_impact.Rd | 53 opitools-1.8.0/opitools/man/opi_score.Rd | 24 opitools-1.8.0/opitools/man/opi_sim.Rd | 16 opitools-1.8.0/opitools/man/osd_data.Rd | 23 opitools-1.8.0/opitools/man/policing_dtd.Rd |only opitools-1.8.0/opitools/man/refreshment_theme.Rd |only opitools-1.8.0/opitools/man/reviews_dtd.Rd |only opitools-1.8.0/opitools/man/signage_theme.Rd |only opitools-1.8.0/opitools/man/tweets.Rd | 20 opitools-1.8.0/opitools/man/word_distrib.Rd | 4 opitools-1.8.0/opitools/man/word_imp.Rd |only opitools-1.8.0/opitools/vignettes/likert.png |binary opitools-1.8.0/opitools/vignettes/opitools-vignette.Rmd | 401 +++--- opitools-1.8.0/opitools/vignettes/references.bib | 19 opitools-1.8.0/opitools/vignettes/wordcloud.png |binary 46 files changed, 1640 insertions(+), 1076 deletions(-)
Title: Locally Stationary Time Series
Description: A set of functions that allow stationary analysis and locally stationary time series analysis.
Author: Ricardo Olea [aut, cph],
Wilfredo Palma [aut, cph],
Pilar Rubio [aut],
Mauricio Vargas [aut, cre] (<https://orcid.org/0000-0003-1017-7574>)
Maintainer: Mauricio Vargas <mavargas11@uc.cl>
Diff between LSTS versions 2.0 dated 2021-04-18 and 2.1 dated 2021-07-29
DESCRIPTION | 25 ++++++----------------- MD5 | 36 +++++++++++++++++----------------- NAMESPACE | 1 NEWS.md | 6 +++++ R/box_ljung_test.R | 2 - R/ls_kalman.R | 8 +++---- R/ls_whittle.R | 18 ++++++++--------- R/ls_whittle_loglik.R | 1 R/ls_whittle_loglik_sd.R | 1 R/ls_whittle_loglik_theta.R | 1 R/ts_diag.R | 12 +++++++---- build/partial.rdb |binary inst/REFERENCES.bib | 43 +++++++++++++++++------------------------ man/LS.kalman.Rd | 8 +++---- man/LS.whittle.Rd | 18 ++++++++--------- man/LS.whittle.loglik.Rd | 3 -- man/LS.whittle.loglik.sd.Rd | 3 -- man/LS.whittle.loglik.theta.Rd | 3 -- man/ts.diag.Rd | 6 ++++- 19 files changed, 90 insertions(+), 105 deletions(-)
Title: A Functionally Oriented Interface for Integrating 'Julia' with R
Description: Allows to import functions and whole packages from 'Julia' in R.
Imported 'Julia' functions can directly be called as R functions.
Data structures can be translated between 'Julia' and R.
Author: Stefan Lenz [aut, cre] (<https://orcid.org/0000-0001-9135-1743>),
Harald Binder [aut] (<https://orcid.org/0000-0002-5666-8662>)
Maintainer: Stefan Lenz <stefan-m-lenz@web.de>
Diff between JuliaConnectoR versions 0.6.3 dated 2021-03-27 and 1.0.0 dated 2021-07-29
JuliaConnectoR-0.6.3/JuliaConnectoR/inst/examples/iris-example/project_1_0 |only JuliaConnectoR-0.6.3/JuliaConnectoR/inst/examples/iris-example/project_1_4 |only JuliaConnectoR-1.0.0/JuliaConnectoR/DESCRIPTION | 8 JuliaConnectoR-1.0.0/JuliaConnectoR/MD5 | 44 JuliaConnectoR-1.0.0/JuliaConnectoR/NAMESPACE | 2 JuliaConnectoR-1.0.0/JuliaConnectoR/R/JuliaConnectoR-package.R | 38 JuliaConnectoR-1.0.0/JuliaConnectoR/R/connecting.R | 136 ++ JuliaConnectoR-1.0.0/JuliaConnectoR/R/handling_dataframes.R | 5 JuliaConnectoR-1.0.0/JuliaConnectoR/R/main.R | 11 JuliaConnectoR-1.0.0/JuliaConnectoR/R/reading.R | 626 +++++----- JuliaConnectoR-1.0.0/JuliaConnectoR/inst/CITATION |only JuliaConnectoR-1.0.0/JuliaConnectoR/inst/Julia/RConnector.jl | 2 JuliaConnectoR-1.0.0/JuliaConnectoR/inst/Julia/communicating.jl | 113 + JuliaConnectoR-1.0.0/JuliaConnectoR/inst/Julia/evaluating.jl | 28 JuliaConnectoR-1.0.0/JuliaConnectoR/inst/Julia/main.jl | 13 JuliaConnectoR-1.0.0/JuliaConnectoR/inst/Julia/sharing.jl | 88 - JuliaConnectoR-1.0.0/JuliaConnectoR/inst/Julia/writing.jl | 35 JuliaConnectoR-1.0.0/JuliaConnectoR/inst/examples/iris-example/iris-example.R | 3 JuliaConnectoR-1.0.0/JuliaConnectoR/inst/examples/iris-example/iris-example.jl | 7 JuliaConnectoR-1.0.0/JuliaConnectoR/inst/examples/iris-example/project_1_6 |only JuliaConnectoR-1.0.0/JuliaConnectoR/man/EnvVars-JuliaConnectoR.Rd |only JuliaConnectoR-1.0.0/JuliaConnectoR/man/startJuliaServer.Rd |only JuliaConnectoR-1.0.0/JuliaConnectoR/man/stopJulia.Rd |only JuliaConnectoR-1.0.0/JuliaConnectoR/tests/testthat.R | 3 JuliaConnectoR-1.0.0/JuliaConnectoR/tests/testthat/test.R | 100 + 25 files changed, 791 insertions(+), 471 deletions(-)
More information about JuliaConnectoR at CRAN
Permanent link
Title: Excel Connector for R
Description: Provides comprehensive functionality to read, write and format Excel data.
Author: Mirai Solutions GmbH [aut],
Martin Studer [cre],
The Apache Software Foundation [ctb, cph] (Apache POI),
Graph Builder [ctb, cph] (Curvesapi Java library),
Brett Woolridge [ctb, cph] (SparseBitSet Java library)
Maintainer: Martin Studer <martin.studer@mirai-solutions.com>
Diff between XLConnect versions 1.0.3 dated 2021-04-11 and 1.0.4 dated 2021-07-29
DESCRIPTION | 15 ++-- MD5 | 23 +++---- NEWS | 6 + R/onLoad.R | 37 ++++++++---- build/vignette.rds |binary inst/COPYRIGHTS | 8 ++ inst/doc/XLConnect.pdf |binary inst/doc/XLConnectImpatient.pdf |binary inst/unitTests/resources/testReadWorksheetSparseBitSet.xlsx |only inst/unitTests/runit.workbook.readWorksheet.R | 4 + java/README | 5 + man/setDataFormat-methods.Rd | 2 man/setDataFormatForType-methods.Rd | 2 13 files changed, 73 insertions(+), 29 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects and adjusted predictions from statistical
models and returns the result as tidy data frames. These data frames are
ready to use with the 'ggplot2'-package. Effects and predictions can be
calculated for many different models. Interaction terms, splines and
polynomial terms are also supported. The main functions are ggpredict(),
ggemmeans() and ggeffect(). There is a generic plot()-method to plot the
results using 'ggplot2'.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Sam Crawley [ctb] (<https://orcid.org/0000-0002-7847-0411>),
Mattan S. Ben-Shachar [ctb] (<https://orcid.org/0000-0002-4287-4801>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between ggeffects versions 1.1.0 dated 2021-04-30 and 1.1.1 dated 2021-07-29
ggeffects-1.1.0/ggeffects/inst/doc/ggeffects.R |only ggeffects-1.1.0/ggeffects/inst/doc/ggeffects.Rmd |only ggeffects-1.1.0/ggeffects/inst/doc/ggeffects.html |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_effectsatvalues.R |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_effectsatvalues.Rmd |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_effectsatvalues.html |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_marginal_effects.R |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_marginal_effects.Rmd |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_marginal_effects.html |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_partial_residuals.R |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_partial_residuals.Rmd |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_partial_residuals.html |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_plotcustomize.R |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_plotcustomize.Rmd |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_plotcustomize.html |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_plotmethod.R |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_plotmethod.Rmd |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_plotmethod.html |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_randomeffects.R |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_randomeffects.Rmd |only ggeffects-1.1.0/ggeffects/inst/doc/introduction_randomeffects.html |only ggeffects-1.1.0/ggeffects/inst/doc/practical_logisticmixedmodel.R |only ggeffects-1.1.0/ggeffects/inst/doc/practical_logisticmixedmodel.Rmd |only ggeffects-1.1.0/ggeffects/inst/doc/practical_logisticmixedmodel.html |only ggeffects-1.1.0/ggeffects/inst/doc/practical_robustestimation.R |only ggeffects-1.1.0/ggeffects/inst/doc/practical_robustestimation.Rmd |only ggeffects-1.1.0/ggeffects/inst/doc/practical_robustestimation.html |only ggeffects-1.1.0/ggeffects/inst/doc/technical_differencepredictemmeans.R |only ggeffects-1.1.0/ggeffects/inst/doc/technical_differencepredictemmeans.Rmd |only ggeffects-1.1.0/ggeffects/inst/doc/technical_differencepredictemmeans.html |only ggeffects-1.1.0/ggeffects/inst/doc/technical_stata.R |only ggeffects-1.1.0/ggeffects/inst/doc/technical_stata.Rmd |only ggeffects-1.1.0/ggeffects/inst/doc/technical_stata.html |only ggeffects-1.1.0/ggeffects/vignettes/ggeffects.Rmd |only ggeffects-1.1.0/ggeffects/vignettes/introduction_effectsatvalues.Rmd |only ggeffects-1.1.0/ggeffects/vignettes/introduction_marginal_effects.Rmd |only ggeffects-1.1.0/ggeffects/vignettes/introduction_partial_residuals.Rmd |only ggeffects-1.1.0/ggeffects/vignettes/introduction_plotcustomize.Rmd |only ggeffects-1.1.0/ggeffects/vignettes/introduction_plotmethod.Rmd |only ggeffects-1.1.0/ggeffects/vignettes/introduction_randomeffects.Rmd |only ggeffects-1.1.0/ggeffects/vignettes/practical_logisticmixedmodel.Rmd |only ggeffects-1.1.0/ggeffects/vignettes/practical_robustestimation.Rmd |only ggeffects-1.1.0/ggeffects/vignettes/technical_differencepredictemmeans.Rmd |only ggeffects-1.1.0/ggeffects/vignettes/technical_stata.Rmd |only ggeffects-1.1.0/ggeffects/vignettes/vignette-stata-1.png |only ggeffects-1.1.1/ggeffects/DESCRIPTION | 6 ggeffects-1.1.1/ggeffects/MD5 | 87 +----- ggeffects-1.1.1/ggeffects/NEWS.md | 15 + ggeffects-1.1.1/ggeffects/R/ggpredict.R | 4 ggeffects-1.1.1/ggeffects/R/plot.R | 8 ggeffects-1.1.1/ggeffects/R/utils.R | 4 ggeffects-1.1.1/ggeffects/R/utils_get_data_grid.R | 26 + ggeffects-1.1.1/ggeffects/R/utils_is_empty.R | 42 +-- ggeffects-1.1.1/ggeffects/build/partial.rdb |binary ggeffects-1.1.1/ggeffects/build/vignette.rds |binary ggeffects-1.1.1/ggeffects/inst/doc/content.R |only ggeffects-1.1.1/ggeffects/inst/doc/content.Rmd |only ggeffects-1.1.1/ggeffects/inst/doc/content.html |only ggeffects-1.1.1/ggeffects/man/collapse_by_group.Rd | 86 +++--- ggeffects-1.1.1/ggeffects/man/efc.Rd | 42 +-- ggeffects-1.1.1/ggeffects/man/fish.Rd | 20 - ggeffects-1.1.1/ggeffects/man/ggpredict.Rd | 4 ggeffects-1.1.1/ggeffects/man/lung2.Rd | 24 - ggeffects-1.1.1/ggeffects/man/new_data.Rd | 104 +++---- ggeffects-1.1.1/ggeffects/man/pool_predictions.Rd | 78 ++--- ggeffects-1.1.1/ggeffects/man/vcov.Rd | 132 +++++----- ggeffects-1.1.1/ggeffects/tests/testthat.R | 34 ++ ggeffects-1.1.1/ggeffects/tests/testthat/test-linear-models.R | 2 ggeffects-1.1.1/ggeffects/vignettes/content.Rmd |only 69 files changed, 378 insertions(+), 340 deletions(-)
Title: Breeding Program Simulations
Description: The successor to the 'AlphaSim' software for breeding program
simulation [Faux et al. (2016) <doi:10.3835/plantgenome2016.02.0013>].
Used for stochastic simulations of breeding programs to the level of DNA
sequence for every individual. Contained is a wide range of functions for
modeling common tasks in a breeding program, such as selection and crossing.
These functions allow for constructing simulations of highly complex plant and
animal breeding programs via scripting in the R software environment. Such
simulations can be used to evaluate overall breeding program performance and
conduct research into breeding program design, such as implementation of
genomic selection. Included is the 'Markovian Coalescent Simulator' ('MaCS')
for fast simulation of biallelic sequences according to a population
demographic history [Chen et al. (2009) <doi:10.1101/gr.083634.108>].
Author: Chris Gaynor [aut, cre] (<https://orcid.org/0000-0003-0558-6656>),
Gregor Gorjanc [ctb] (<https://orcid.org/0000-0001-8008-2787>),
John Hickey [ctb] (<https://orcid.org/0000-0001-5675-3974>),
Daniel Money [ctb] (<https://orcid.org/0000-0001-5151-3648>),
David Wilson [ctb]
Maintainer: Chris Gaynor <gaynor.robert@hotmail.com>
Diff between AlphaSimR versions 1.0.2 dated 2021-07-28 and 1.0.3 dated 2021-07-29
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 5 +++++ R/founderPop.R | 2 +- inst/doc/intro.html | 6 +++--- inst/doc/traits.pdf |binary 6 files changed, 18 insertions(+), 13 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-20 0.7.0
2020-08-28 0.6.1
2020-05-04 0.5.0
2020-02-13 0.4.0
2019-05-23 0.3.1
2019-05-16 0.3.0
2019-04-04 0.2.0
2018-10-26 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-12 0.4.1
2021-04-02 0.4.0
2020-07-14 0.3.1
2019-12-09 0.2.0
2019-03-05 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-15 0.3.0
2020-03-23 0.2.0
2019-11-30 0.1.2
2019-10-01 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-11 0.7.0
2020-09-13 0.6.0
2020-02-26 0.5.0
2019-05-24 0.4.1
2019-02-27 0.3.1
2018-12-10 0.3.0
2018-09-18 0.2.2
2018-09-11 0.1.6
2018-08-16 0.1.5
Title: Regional Vulnerability Index
Description: The Regional Vulnerability Index (RVI), a statistical measure of brain structural abnormality, quantifies an individual's similarity to the expected pattern of deficits in schizophrenia (Kochunov P, Fan F, Ryan MC, et al. (2020) <doi:10.1002/hbm.25045>).
Author: Peter Kochunov [aut],
Si Gao [aut, cre],
Fatima Talib [aut]
Maintainer: Si Gao <sgao@som.umaryland.edu>
Diff between RVIpkg versions 0.2.5 dated 2021-07-20 and 0.2.6 dated 2021-07-29
DESCRIPTION | 6 - MD5 | 24 ++--- R/EP.GM.R | 29 +++--- R/EP.Subcortical.R | 29 +++--- R/RVI_func.R | 214 ++++++++++++++++++++++++------------------------ R/sysdata.rda |binary build/partial.rdb |binary data/EP.GM.rda |binary data/EP.Subcortical.rda |binary data/EP.WM.rda |binary man/EP.GM.Rd | 1 man/EP.Subcortical.Rd | 1 man/RVI_func.Rd | 6 - 13 files changed, 157 insertions(+), 153 deletions(-)
Title: Find Free Versions of Scholarly Publications via Unpaywall
Description: This web client interfaces Unpaywall <https://unpaywall.org/products/api>, formerly
oaDOI, a service finding free full-texts of academic papers by linking DOIs with
open access journals and repositories. It provides unified access to various data sources
for open access full-text links including Crossref and the Directory of Open Access
Journals (DOAJ). API usage is free and no registration is required.
Author: Najko Jahn [aut, cre],
Tuija Sonkkila [rev] (Tuija Sonkkila reviewed the package for rOpenSci,
see https://github.com/ropensci/onboarding/issues/115,
<https://orcid.org/0000-0002-6892-9305>),
Ross Mounce [rev] (Ross Mounce reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/115,
<https://orcid.org/0000-0002-3520-2046>),
Anne Hobert [ctb] (<https://orcid.org/0000-0003-2429-2995>),
Delwen Franzen [ctb]
Maintainer: Najko Jahn <najko.jahn@gmail.com>
Diff between roadoi versions 0.7 dated 2021-01-20 and 0.7.1 dated 2021-07-29
DESCRIPTION | 10 MD5 | 16 - README.md | 344 ++++---------------------------- build/vignette.rds |binary inst/doc/intro.R | 30 -- inst/doc/intro.Rmd | 70 ------ inst/doc/intro.html | 404 +++++--------------------------------- tests/testthat/test_oadoi_fetch.r | 2 vignettes/intro.Rmd | 70 ------ 9 files changed, 120 insertions(+), 826 deletions(-)
Title: Earth Observation Data Cubes from Satellite Image Collections
Description: Processing collections of Earth observation images as on-demand multispectral, multitemporal raster data cubes. Users
define cubes by spatiotemporal extent, resolution, and spatial reference system and let 'gdalcubes' automatically apply cropping, reprojection, and
resampling using the 'Geospatial Data Abstraction Library' ('GDAL'). Implemented functions on data cubes include reduction over space and time,
applying arithmetic expressions on pixel band values, moving window aggregates over time, filtering by space, time, bands, and predicates on pixel values,
exporting data cubes as 'netCDF' or 'GeoTIFF' files, and plotting. The package implements lazy evaluation and
multithreading. All computational parts are implemented in C++, linking to the 'GDAL', 'netCDF', 'CURL', and 'SQLite' libraries.
See Appel and Pebesma (2019) <doi:10.3390/data4030092> for further details.
Author: Marius Appel [aut, cre] (<https://orcid.org/0000-0001-5281-3896>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>),
Roger Bivand [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Lewis Van Winkle [cph],
Ole Christian Eidheim [cph],
Howard Hinnant [cph],
Adrian Colomitchi [cph],
Florian Dang [cph],
Paul Thompson [cph],
Tomasz Kamiński [cph],
Dropbox, Inc. [cph]
Maintainer: Marius Appel <marius.appel@uni-muenster.de>
Diff between gdalcubes versions 0.4.0 dated 2021-07-13 and 0.4.1 dated 2021-07-29
DESCRIPTION | 13 +++++++++---- MD5 | 17 +++++++++-------- NEWS.md | 5 +++++ configure | 21 ++++++++++----------- configure.ac | 5 ++--- inst/doc/MODIS.html | 12 ++++++------ src/Makevars.ucrt |only src/Makevars.win | 22 ++++++++++++---------- src/RcppExports.cpp | 5 +++++ tools/winlibs.R | 3 +-- 10 files changed, 59 insertions(+), 44 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut, cre],
Ian Cook [aut],
Nic Crane [aut],
Jonathan Keane [aut],
Romain François [aut] (<https://orcid.org/0000-0002-2444-4226>),
Jeroen Ooms [aut],
Javier Luraschi [ctb],
Jeffrey Wong [ctb],
Apache Arrow [aut, cph]
Maintainer: Neal Richardson <neal@ursalabs.org>
Diff between arrow versions 4.0.1 dated 2021-05-28 and 5.0.0 dated 2021-07-29
arrow-4.0.1/arrow/src/runtimeinfo.cpp |only arrow-5.0.0/arrow/DESCRIPTION | 33 arrow-5.0.0/arrow/MD5 | 305 +-- arrow-5.0.0/arrow/NAMESPACE | 33 arrow-5.0.0/arrow/NEWS.md | 39 arrow-5.0.0/arrow/R/array-data.R | 10 arrow-5.0.0/arrow/R/array.R | 32 arrow-5.0.0/arrow/R/arrow-datum.R | 121 + arrow-5.0.0/arrow/R/arrow-package.R | 41 arrow-5.0.0/arrow/R/arrow-tabular.R | 23 arrow-5.0.0/arrow/R/arrowExports.R | 180 + arrow-5.0.0/arrow/R/buffer.R | 14 arrow-5.0.0/arrow/R/chunked-array.R | 32 arrow-5.0.0/arrow/R/compression.R | 6 arrow-5.0.0/arrow/R/compute.R | 114 - arrow-5.0.0/arrow/R/config.R | 14 arrow-5.0.0/arrow/R/csv.R | 66 arrow-5.0.0/arrow/R/dataset-format.R | 19 arrow-5.0.0/arrow/R/dataset-partition.R | 30 arrow-5.0.0/arrow/R/dataset-scan.R | 34 arrow-5.0.0/arrow/R/dataset-write.R | 10 arrow-5.0.0/arrow/R/dataset.R | 90 arrow-5.0.0/arrow/R/dplyr-arrange.R |only arrow-5.0.0/arrow/R/dplyr-collect.R |only arrow-5.0.0/arrow/R/dplyr-eval.R |only arrow-5.0.0/arrow/R/dplyr-filter.R |only arrow-5.0.0/arrow/R/dplyr-functions.R |only arrow-5.0.0/arrow/R/dplyr-group-by.R |only arrow-5.0.0/arrow/R/dplyr-mutate.R |only arrow-5.0.0/arrow/R/dplyr-select.R |only arrow-5.0.0/arrow/R/dplyr-summarize.R |only arrow-5.0.0/arrow/R/dplyr.R | 945 ---------- arrow-5.0.0/arrow/R/enums.R | 12 arrow-5.0.0/arrow/R/expression.R | 305 +-- arrow-5.0.0/arrow/R/feather.R | 11 arrow-5.0.0/arrow/R/field.R | 9 arrow-5.0.0/arrow/R/filesystem.R | 12 arrow-5.0.0/arrow/R/flight.R | 2 arrow-5.0.0/arrow/R/ipc_stream.R | 9 arrow-5.0.0/arrow/R/json.R | 4 arrow-5.0.0/arrow/R/metadata.R | 47 arrow-5.0.0/arrow/R/parquet.R | 21 arrow-5.0.0/arrow/R/python.R | 77 arrow-5.0.0/arrow/R/record-batch-reader.R | 22 arrow-5.0.0/arrow/R/record-batch-writer.R | 4 arrow-5.0.0/arrow/R/record-batch.R | 21 arrow-5.0.0/arrow/R/scalar.R | 30 arrow-5.0.0/arrow/R/schema.R | 17 arrow-5.0.0/arrow/R/table.R | 20 arrow-5.0.0/arrow/R/type.R | 66 arrow-5.0.0/arrow/R/util.R | 74 arrow-5.0.0/arrow/README.md | 8 arrow-5.0.0/arrow/configure | 7 arrow-5.0.0/arrow/inst/build_arrow_static.sh | 2 arrow-5.0.0/arrow/inst/doc/arrow.html | 648 +++--- arrow-5.0.0/arrow/inst/doc/dataset.html | 704 ++----- arrow-5.0.0/arrow/inst/doc/developing.R | 5 arrow-5.0.0/arrow/inst/doc/developing.Rmd | 16 arrow-5.0.0/arrow/inst/doc/developing.html | 812 +++----- arrow-5.0.0/arrow/inst/doc/flight.html | 392 +--- arrow-5.0.0/arrow/inst/doc/fs.html | 423 +--- arrow-5.0.0/arrow/inst/doc/install.html | 689 ++----- arrow-5.0.0/arrow/inst/doc/python.html | 460 +--- arrow-5.0.0/arrow/man/ArrayData.Rd | 10 arrow-5.0.0/arrow/man/ChunkedArray.Rd | 30 arrow-5.0.0/arrow/man/CsvReadOptions.Rd | 7 arrow-5.0.0/arrow/man/Field.Rd | 4 arrow-5.0.0/arrow/man/FileFormat.Rd | 15 arrow-5.0.0/arrow/man/ParquetFileReader.Rd | 4 arrow-5.0.0/arrow/man/RecordBatch.Rd | 4 arrow-5.0.0/arrow/man/RecordBatchReader.Rd | 6 arrow-5.0.0/arrow/man/RecordBatchWriter.Rd | 4 arrow-5.0.0/arrow/man/Scalar.Rd | 29 arrow-5.0.0/arrow/man/Scanner.Rd | 3 arrow-5.0.0/arrow/man/Schema.Rd | 4 arrow-5.0.0/arrow/man/Table.Rd | 4 arrow-5.0.0/arrow/man/array.Rd | 29 arrow-5.0.0/arrow/man/arrow-package.Rd | 1 arrow-5.0.0/arrow/man/buffer.Rd | 17 arrow-5.0.0/arrow/man/call_function.Rd | 8 arrow-5.0.0/arrow/man/codec_is_available.Rd | 5 arrow-5.0.0/arrow/man/contains_regex.Rd |only arrow-5.0.0/arrow/man/copy_files.Rd | 4 arrow-5.0.0/arrow/man/data-type.Rd | 4 arrow-5.0.0/arrow/man/enums.Rd | 5 arrow-5.0.0/arrow/man/get_stringr_pattern_options.Rd |only arrow-5.0.0/arrow/man/hive_partition.Rd | 9 arrow-5.0.0/arrow/man/io_thread_count.Rd |only arrow-5.0.0/arrow/man/list_compute_functions.Rd | 7 arrow-5.0.0/arrow/man/load_flight_server.Rd | 5 arrow-5.0.0/arrow/man/match_arrow.Rd | 35 arrow-5.0.0/arrow/man/open_dataset.Rd | 65 arrow-5.0.0/arrow/man/read_delim_arrow.Rd | 4 arrow-5.0.0/arrow/man/read_feather.Rd | 4 arrow-5.0.0/arrow/man/read_json_arrow.Rd | 4 arrow-5.0.0/arrow/man/read_parquet.Rd | 4 arrow-5.0.0/arrow/man/recycle_scalars.Rd |only arrow-5.0.0/arrow/man/repeat_value_as_array.Rd |only arrow-5.0.0/arrow/man/s3_bucket.Rd | 6 arrow-5.0.0/arrow/man/type.Rd | 10 arrow-5.0.0/arrow/man/unify_schemas.Rd | 7 arrow-5.0.0/arrow/man/value_counts.Rd | 6 arrow-5.0.0/arrow/man/write_csv_arrow.Rd |only arrow-5.0.0/arrow/man/write_dataset.Rd | 2 arrow-5.0.0/arrow/man/write_feather.Rd | 4 arrow-5.0.0/arrow/man/write_ipc_stream.Rd | 7 arrow-5.0.0/arrow/man/write_parquet.Rd | 4 arrow-5.0.0/arrow/man/write_to_raw.Rd | 7 arrow-5.0.0/arrow/src/RTasks.cpp |only arrow-5.0.0/arrow/src/altrep.cpp |only arrow-5.0.0/arrow/src/array_to_vector.cpp | 401 +--- arrow-5.0.0/arrow/src/arrowExports.cpp | 695 +++++-- arrow-5.0.0/arrow/src/arrow_cpp11.h | 1 arrow-5.0.0/arrow/src/arrow_types.h | 24 arrow-5.0.0/arrow/src/compute.cpp | 124 + arrow-5.0.0/arrow/src/config.cpp |only arrow-5.0.0/arrow/src/csv.cpp | 30 arrow-5.0.0/arrow/src/dataset.cpp | 71 arrow-5.0.0/arrow/src/expression.cpp | 71 arrow-5.0.0/arrow/src/py-to-r.cpp | 48 arrow-5.0.0/arrow/src/r_task_group.h |only arrow-5.0.0/arrow/src/r_to_arrow.cpp | 804 ++++++-- arrow-5.0.0/arrow/src/recordbatch.cpp | 21 arrow-5.0.0/arrow/src/recordbatchreader.cpp | 40 arrow-5.0.0/arrow/src/scalar.cpp | 4 arrow-5.0.0/arrow/src/symbols.cpp | 9 arrow-5.0.0/arrow/src/table.cpp | 64 arrow-5.0.0/arrow/src/threadpool.cpp | 8 arrow-5.0.0/arrow/src/type_infer.cpp | 2 arrow-5.0.0/arrow/tests/testthat/helper-arrow.R | 8 arrow-5.0.0/arrow/tests/testthat/helper-data.R | 2 arrow-5.0.0/arrow/tests/testthat/helper-expectation.R | 143 + arrow-5.0.0/arrow/tests/testthat/test-Array.R | 85 arrow-5.0.0/arrow/tests/testthat/test-RecordBatch.R | 154 + arrow-5.0.0/arrow/tests/testthat/test-Table.R | 106 - arrow-5.0.0/arrow/tests/testthat/test-altrep.R |only arrow-5.0.0/arrow/tests/testthat/test-chunked-array.R | 54 arrow-5.0.0/arrow/tests/testthat/test-compute-aggregate.R | 91 arrow-5.0.0/arrow/tests/testthat/test-compute-arith.R | 5 arrow-5.0.0/arrow/tests/testthat/test-compute-sort.R | 18 arrow-5.0.0/arrow/tests/testthat/test-csv.R | 77 arrow-5.0.0/arrow/tests/testthat/test-data-type.R | 15 arrow-5.0.0/arrow/tests/testthat/test-dataset.R | 566 ++--- arrow-5.0.0/arrow/tests/testthat/test-dplyr-arrange.R | 23 arrow-5.0.0/arrow/tests/testthat/test-dplyr-filter.R | 67 arrow-5.0.0/arrow/tests/testthat/test-dplyr-group-by.R | 2 arrow-5.0.0/arrow/tests/testthat/test-dplyr-lubridate.R |only arrow-5.0.0/arrow/tests/testthat/test-dplyr-mutate.R | 176 + arrow-5.0.0/arrow/tests/testthat/test-dplyr-string-functions.R | 782 +++++++- arrow-5.0.0/arrow/tests/testthat/test-dplyr.R | 942 +++++++++ arrow-5.0.0/arrow/tests/testthat/test-expression.R | 115 - arrow-5.0.0/arrow/tests/testthat/test-feather.R | 8 arrow-5.0.0/arrow/tests/testthat/test-field.R | 15 arrow-5.0.0/arrow/tests/testthat/test-filesystem.R | 4 arrow-5.0.0/arrow/tests/testthat/test-metadata.R | 42 arrow-5.0.0/arrow/tests/testthat/test-na-omit.R |only arrow-5.0.0/arrow/tests/testthat/test-parquet.R | 8 arrow-5.0.0/arrow/tests/testthat/test-python.R | 57 arrow-5.0.0/arrow/tests/testthat/test-scalar.R | 2 arrow-5.0.0/arrow/tests/testthat/test-schema.R | 28 arrow-5.0.0/arrow/tests/testthat/test-thread-pool.R | 8 arrow-5.0.0/arrow/tests/testthat/test-type.R | 107 + arrow-5.0.0/arrow/tools/nixlibs.R | 46 arrow-5.0.0/arrow/tools/winlibs.R | 6 arrow-5.0.0/arrow/vignettes/developing.Rmd | 16 165 files changed, 8035 insertions(+), 5667 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-27 0.6.0
2020-03-30 0.5.1
2019-12-16 0.5.0
2019-09-02 0.4.0
2018-12-05 0.3.0
2018-09-10 0.2.0
2018-05-30 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-14 0.1.0
Title: Class-Agnostic Time Series
Description: Time series toolkit with identical behavior for all
time series classes: 'ts','xts', 'data.frame', 'data.table', 'tibble', 'zoo',
'timeSeries', 'tsibble', 'tis' or 'irts'. Also converts reliably between these classes.
Author: Christoph Sax [aut, cre] (<https://orcid.org/0000-0002-7192-7044>)
Maintainer: Christoph Sax <christoph.sax@gmail.com>
Diff between tsbox versions 0.2.1 dated 2020-04-29 and 0.3.0 dated 2021-07-29
tsbox-0.2.1/tsbox/tests/testthat/test_arithmetic.R |only tsbox-0.2.1/tsbox/tests/testthat/test_auto.R |only tsbox-0.2.1/tsbox/tests/testthat/test_date_utils.R |only tsbox-0.2.1/tsbox/tests/testthat/test_defects.R |only tsbox-0.2.1/tsbox/tests/testthat/test_dirty.R |only tsbox-0.2.1/tsbox/tests/testthat/test_non_heuristic.R |only tsbox-0.2.1/tsbox/tests/testthat/test_nonstandard_cnames.R |only tsbox-0.2.1/tsbox/tests/testthat/test_nyc_flights.R |only tsbox-0.2.1/tsbox/tests/testthat/test_object_conversion.R |only tsbox-0.2.1/tsbox/tests/testthat/test_readme.R |only tsbox-0.2.1/tsbox/tests/testthat/test_subannual.R |only tsbox-0.2.1/tsbox/tests/testthat/test_time_conversion.R |only tsbox-0.2.1/tsbox/tests/testthat/test_tricky.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_bind.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_chain.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_default.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_frequency.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_high_freq.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_index.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_irregular.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_lag.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_long_wide.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_low_freq.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_pc.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_pick.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_plot.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_regular.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_scale.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_span.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_summary.R |only tsbox-0.2.1/tsbox/tests/testthat/test_ts_tzone.R |only tsbox-0.2.1/tsbox/tests/testthat/test_tsibble.R |only tsbox-0.2.1/tsbox/tests/testthat/test_tslist.R |only tsbox-0.3.0/tsbox/DESCRIPTION | 15 tsbox-0.3.0/tsbox/MD5 | 227 ++++----- tsbox-0.3.0/tsbox/NAMESPACE | 17 tsbox-0.3.0/tsbox/NEWS.md | 37 + tsbox-0.3.0/tsbox/R/0_convert_data.R | 104 +--- tsbox-0.3.0/tsbox/R/convert_exact.R | 4 tsbox-0.3.0/tsbox/R/convert_heuristic.R | 18 tsbox-0.3.0/tsbox/R/date_helpers.R | 5 tsbox-0.3.0/tsbox/R/date_utils.R | 18 tsbox-0.3.0/tsbox/R/dts.R | 4 tsbox-0.3.0/tsbox/R/dts_helpers.R | 27 - tsbox-0.3.0/tsbox/R/guess_dts.R | 9 tsbox-0.3.0/tsbox/R/guess_time_var_value.R | 12 tsbox-0.3.0/tsbox/R/sysdata.rda |only tsbox-0.3.0/tsbox/R/to_from_all.R | 18 tsbox-0.3.0/tsbox/R/to_from_ts.R | 47 + tsbox-0.3.0/tsbox/R/to_from_tsibble.R | 18 tsbox-0.3.0/tsbox/R/to_from_tslist.R | 7 tsbox-0.3.0/tsbox/R/to_from_xts.R | 8 tsbox-0.3.0/tsbox/R/ts_.R | 16 tsbox-0.3.0/tsbox/R/ts_apply.R | 1 tsbox-0.3.0/tsbox/R/ts_arithmetic.R | 8 tsbox-0.3.0/tsbox/R/ts_bind.R | 13 tsbox-0.3.0/tsbox/R/ts_c.R | 25 tsbox-0.3.0/tsbox/R/ts_chain.R | 6 tsbox-0.3.0/tsbox/R/ts_default.R | 4 tsbox-0.3.0/tsbox/R/ts_examples.R | 24 tsbox-0.3.0/tsbox/R/ts_first_of_period.R | 34 - tsbox-0.3.0/tsbox/R/ts_frequency.R | 121 +++- tsbox-0.3.0/tsbox/R/ts_ggplot.R | 82 ++- tsbox-0.3.0/tsbox/R/ts_index.R | 69 +- tsbox-0.3.0/tsbox/R/ts_lag.R | 3 tsbox-0.3.0/tsbox/R/ts_long_wide.R | 25 tsbox-0.3.0/tsbox/R/ts_na_omit.R | 3 tsbox-0.3.0/tsbox/R/ts_pc.R | 5 tsbox-0.3.0/tsbox/R/ts_pick.R | 10 tsbox-0.3.0/tsbox/R/ts_plot.R | 23 tsbox-0.3.0/tsbox/R/ts_regular.R | 12 tsbox-0.3.0/tsbox/R/ts_span.R | 36 + tsbox-0.3.0/tsbox/R/ts_summary.R | 22 tsbox-0.3.0/tsbox/R/ts_trend.R | 6 tsbox-0.3.0/tsbox/R/tsbox-package.R | 26 - tsbox-0.3.0/tsbox/README.md | 72 +- tsbox-0.3.0/tsbox/build/vignette.rds |binary tsbox-0.3.0/tsbox/inst/CITATION |only tsbox-0.3.0/tsbox/inst/WORDLIST | 22 tsbox-0.3.0/tsbox/inst/doc/convert.Rmd | 2 tsbox-0.3.0/tsbox/inst/doc/convert.html | 310 ++---------- tsbox-0.3.0/tsbox/inst/doc/ts-functions.Rmd | 2 tsbox-0.3.0/tsbox/inst/doc/ts-functions.html | 298 ++--------- tsbox-0.3.0/tsbox/inst/doc/tsbox.html | 326 +++---------- tsbox-0.3.0/tsbox/inst/upd_meta_freq_data.R |only tsbox-0.3.0/tsbox/man/copy_class.Rd | 17 tsbox-0.3.0/tsbox/man/relevant_class.Rd | 4 tsbox-0.3.0/tsbox/man/ts_.Rd | 15 tsbox-0.3.0/tsbox/man/ts_arithmetic.Rd | 8 tsbox-0.3.0/tsbox/man/ts_bind.Rd | 4 tsbox-0.3.0/tsbox/man/ts_boxable.Rd | 4 tsbox-0.3.0/tsbox/man/ts_c.Rd | 4 tsbox-0.3.0/tsbox/man/ts_default.Rd | 4 tsbox-0.3.0/tsbox/man/ts_dts.Rd | 4 tsbox-0.3.0/tsbox/man/ts_examples.Rd | 15 tsbox-0.3.0/tsbox/man/ts_first_of_period.Rd |only tsbox-0.3.0/tsbox/man/ts_frequency.Rd | 19 tsbox-0.3.0/tsbox/man/ts_ggplot.Rd | 14 tsbox-0.3.0/tsbox/man/ts_index.Rd | 18 tsbox-0.3.0/tsbox/man/ts_lag.Rd | 6 tsbox-0.3.0/tsbox/man/ts_long.Rd | 8 tsbox-0.3.0/tsbox/man/ts_na_omit.Rd | 7 tsbox-0.3.0/tsbox/man/ts_pc.Rd | 4 tsbox-0.3.0/tsbox/man/ts_pick.Rd | 8 tsbox-0.3.0/tsbox/man/ts_plot.Rd | 15 tsbox-0.3.0/tsbox/man/ts_regular.Rd | 4 tsbox-0.3.0/tsbox/man/ts_span.Rd | 11 tsbox-0.3.0/tsbox/man/ts_summary.Rd | 8 tsbox-0.3.0/tsbox/man/ts_trend.Rd | 7 tsbox-0.3.0/tsbox/man/ts_ts.Rd | 34 - tsbox-0.3.0/tsbox/man/tsbox-deprecated.Rd | 4 tsbox-0.3.0/tsbox/man/tsbox-package.Rd | 26 - tsbox-0.3.0/tsbox/tests/spelling.R |only tsbox-0.3.0/tsbox/tests/testthat/test-arithmetic.R |only tsbox-0.3.0/tsbox/tests/testthat/test-auto.R |only tsbox-0.3.0/tsbox/tests/testthat/test-date_utils.R |only tsbox-0.3.0/tsbox/tests/testthat/test-defects.R |only tsbox-0.3.0/tsbox/tests/testthat/test-dirty.R |only tsbox-0.3.0/tsbox/tests/testthat/test-issues.R |only tsbox-0.3.0/tsbox/tests/testthat/test-non_heuristic.R |only tsbox-0.3.0/tsbox/tests/testthat/test-nonstandard_cnames.R |only tsbox-0.3.0/tsbox/tests/testthat/test-nyc_flights.R |only tsbox-0.3.0/tsbox/tests/testthat/test-object_conversion.R |only tsbox-0.3.0/tsbox/tests/testthat/test-readme.R |only tsbox-0.3.0/tsbox/tests/testthat/test-subannual.R |only tsbox-0.3.0/tsbox/tests/testthat/test-time_conversion.R |only tsbox-0.3.0/tsbox/tests/testthat/test-tricky.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_bind.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_chain.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_default.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_first_of_period.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_frequency.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_high_freq.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_index.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_irregular.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_lag.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_long_wide.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_low_freq.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_pc.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_pick.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_plot.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_regular.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_scale.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_span.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_summary.R |only tsbox-0.3.0/tsbox/tests/testthat/test-ts_tzone.R |only tsbox-0.3.0/tsbox/tests/testthat/test-tsibble.R |only tsbox-0.3.0/tsbox/tests/testthat/test-tslist.R |only tsbox-0.3.0/tsbox/vignettes/convert.Rmd | 2 tsbox-0.3.0/tsbox/vignettes/ts-functions.Rmd | 2 152 files changed, 1215 insertions(+), 1262 deletions(-)
Title: Genome Wide Association Studies
Description: Fast single trait Genome Wide Association Studies (GWAS) following
the method described in Kang et al. (2010), <doi:10.1038/ng.548>.
One of a series of statistical genetic packages for streamlining the
analysis of typical plant breeding experiments developed by Biometris.
Author: Bart-Jan van Rossum [aut, cre]
(<https://orcid.org/0000-0002-8673-2514>),
Willem Kruijer [aut] (<https://orcid.org/0000-0001-7179-1733>),
Fred van Eeuwijk [ctb] (<https://orcid.org/0000-0003-3672-2921>),
Martin Boer [ctb],
Marcos Malosetti [ctb] (<https://orcid.org/0000-0002-8150-1397>),
Daniela Bustos-Korts [ctb] (<https://orcid.org/0000-0003-3827-6726>),
Emilie Millet [ctb] (<https://orcid.org/0000-0002-2913-4892>),
Joao Paulo [ctb] (<https://orcid.org/0000-0002-4180-0763>),
Maikel Verouden [ctb] (<https://orcid.org/0000-0002-4893-3323>),
Ron Wehrens [ctb] (<https://orcid.org/0000-0002-8798-5599>),
Choazhi Zheng [ctb] (<https://orcid.org/0000-0001-6030-3933>)
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenGWAS versions 1.0.6 dated 2021-07-26 and 1.0.7 dated 2021-07-29
statgenGWAS-1.0.6/statgenGWAS/R/sysdata.rda |only statgenGWAS-1.0.7/statgenGWAS/DESCRIPTION | 8 statgenGWAS-1.0.7/statgenGWAS/MD5 | 33 +- statgenGWAS-1.0.7/statgenGWAS/NEWS.md | 4 statgenGWAS-1.0.7/statgenGWAS/build/partial.rdb |binary statgenGWAS-1.0.7/statgenGWAS/inst/doc/GWAS.html | 40 +- statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/result1_GWARes_ph1 |only statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/result2_GWARes_ph1 |only statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/result3_GWARes_ph1 |only statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/resultM1_GWARes_ph1 |only statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/resultM2_GWARes_ph1 |only statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/resultM3_GWARes_ph1 |only statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/stg0_GWARes_ph1 |only statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/stg1_GWARes_ph2 |only statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/stgM0_GWARes_ph1 |only statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/stgM1_GWARes_ph2 |only statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/test_GWAS.R | 16 statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/test_STG.R | 163 +--------- statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/test_STGHelper.R | 27 - statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/test_STGoptions.R | 20 - statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/test_plots.R | 8 statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/test_utils.R | 5 statgenGWAS-1.0.7/statgenGWAS/inst/tinytest/testdata.rda |binary 23 files changed, 118 insertions(+), 206 deletions(-)
Title: Coloured Formatting for Columns
Description: Provides 'pillar' and 'colonnade' generics designed
for formatting columns of data using the full range of colours
provided by modern terminals.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between pillar versions 1.6.1 dated 2021-05-16 and 1.6.2 dated 2021-07-29
pillar-1.6.1/pillar/R/tibble-opt.R |only pillar-1.6.1/pillar/tests/testthat/test-tibble-opt.R |only pillar-1.6.2/pillar/DESCRIPTION | 10 pillar-1.6.2/pillar/MD5 | 182 ++-- pillar-1.6.2/pillar/NAMESPACE | 3 pillar-1.6.2/pillar/NEWS.md | 38 pillar-1.6.2/pillar/R/aaa-options.R |only pillar-1.6.2/pillar/R/char.R | 8 pillar-1.6.2/pillar/R/continuation-data.R | 4 pillar-1.6.2/pillar/R/ctl_colonnade.R | 123 +- pillar-1.6.2/pillar/R/ctl_new_pillar.R | 2 pillar-1.6.2/pillar/R/ctl_pillar.R | 2 pillar-1.6.2/pillar/R/ctl_pillar_component.R | 19 pillar-1.6.2/pillar/R/deprecated.R | 16 pillar-1.6.2/pillar/R/extent.R | 4 pillar-1.6.2/pillar/R/glimpse.R | 11 pillar-1.6.2/pillar/R/multi.R | 137 ++- pillar-1.6.2/pillar/R/num.R | 54 - pillar-1.6.2/pillar/R/options.R |only pillar-1.6.2/pillar/R/ornament.R | 3 pillar-1.6.2/pillar/R/pillar-package.R | 31 pillar-1.6.2/pillar/R/pillar.R | 2 pillar-1.6.2/pillar/R/shaft-.R | 33 pillar-1.6.2/pillar/R/shaft-simple.R | 8 pillar-1.6.2/pillar/R/sigfig.R | 16 pillar-1.6.2/pillar/R/styles.R | 22 pillar-1.6.2/pillar/R/tbl-format-body.R | 2 pillar-1.6.2/pillar/R/tbl-format-footer.R | 88 + pillar-1.6.2/pillar/R/tbl-format-header.R | 2 pillar-1.6.2/pillar/R/tbl-format-setup.R | 35 pillar-1.6.2/pillar/R/tbl-format.R | 72 + pillar-1.6.2/pillar/R/title.R | 2 pillar-1.6.2/pillar/R/type-sum.R | 10 pillar-1.6.2/pillar/R/type.R | 6 pillar-1.6.2/pillar/R/utils.R | 12 pillar-1.6.2/pillar/R/vctr.R | 2 pillar-1.6.2/pillar/R/vctrs.R | 2 pillar-1.6.2/pillar/R/width.R | 4 pillar-1.6.2/pillar/R/zzz.R | 9 pillar-1.6.2/pillar/build/vignette.rds |binary pillar-1.6.2/pillar/inst/doc/debugme.html | 1 pillar-1.6.2/pillar/inst/doc/digits.Rmd | 14 pillar-1.6.2/pillar/inst/doc/digits.html | 22 pillar-1.6.2/pillar/inst/doc/extending.html | 1 pillar-1.6.2/pillar/inst/doc/numbers.R | 14 pillar-1.6.2/pillar/inst/doc/numbers.Rmd | 17 pillar-1.6.2/pillar/inst/doc/numbers.html | 191 ++-- pillar-1.6.2/pillar/inst/doc/printing.R | 38 pillar-1.6.2/pillar/inst/doc/printing.html | 75 - pillar-1.6.2/pillar/man/colonnade.Rd | 22 pillar-1.6.2/pillar/man/ctl_new_pillar.Rd | 2 pillar-1.6.2/pillar/man/deprecated.Rd | 10 pillar-1.6.2/pillar/man/format_tbl.Rd | 38 pillar-1.6.2/pillar/man/format_type_sum.Rd | 1 pillar-1.6.2/pillar/man/glimpse.Rd | 7 pillar-1.6.2/pillar/man/new_tbl_format_setup.Rd | 5 pillar-1.6.2/pillar/man/num.Rd | 23 pillar-1.6.2/pillar/man/pillar-package.Rd | 39 pillar-1.6.2/pillar/man/pillar_options.Rd |only pillar-1.6.2/pillar/man/style_subtle.Rd | 12 pillar-1.6.2/pillar/man/tbl_format_body.Rd | 2 pillar-1.6.2/pillar/man/tbl_format_footer.Rd | 2 pillar-1.6.2/pillar/man/tbl_format_header.Rd | 2 pillar-1.6.2/pillar/man/tbl_format_setup.Rd | 23 pillar-1.6.2/pillar/man/type_sum.Rd | 7 pillar-1.6.2/pillar/tests/testthat.R | 10 pillar-1.6.2/pillar/tests/testthat/_snaps/ctl_colonnade.md | 21 pillar-1.6.2/pillar/tests/testthat/_snaps/ctl_colonnade_1.md | 442 +++++----- pillar-1.6.2/pillar/tests/testthat/_snaps/ctl_colonnade_2.md | 442 +++++----- pillar-1.6.2/pillar/tests/testthat/_snaps/format_character.md | 12 pillar-1.6.2/pillar/tests/testthat/_snaps/format_integer64.md | 36 pillar-1.6.2/pillar/tests/testthat/_snaps/format_list_of.md | 10 pillar-1.6.2/pillar/tests/testthat/_snaps/format_multi.md | 31 pillar-1.6.2/pillar/tests/testthat/_snaps/format_multi_fuzz.md | 352 +++---- pillar-1.6.2/pillar/tests/testthat/_snaps/format_multi_fuzz_2.md | 352 +++---- pillar-1.6.2/pillar/tests/testthat/_snaps/format_survival.md | 28 pillar-1.6.2/pillar/tests/testthat/_snaps/format_unspecified.md | 8 pillar-1.6.2/pillar/tests/testthat/_snaps/multi.md |only pillar-1.6.2/pillar/tests/testthat/_snaps/num.md | 11 pillar-1.6.2/pillar/tests/testthat/_snaps/tbl-format-footer.md | 152 +++ pillar-1.6.2/pillar/tests/testthat/_snaps/tbl-format-setup.md | 56 - pillar-1.6.2/pillar/tests/testthat/_snaps/tbl-format.md | 58 + pillar-1.6.2/pillar/tests/testthat/_snaps/type_sum.md | 10 pillar-1.6.2/pillar/tests/testthat/setup.R | 2 pillar-1.6.2/pillar/tests/testthat/test-ctl_colonnade.R | 43 pillar-1.6.2/pillar/tests/testthat/test-ctl_colonnade_1.R | 63 - pillar-1.6.2/pillar/tests/testthat/test-ctl_colonnade_2.R | 59 - pillar-1.6.2/pillar/tests/testthat/test-format_integer64.R | 3 pillar-1.6.2/pillar/tests/testthat/test-format_multi.R | 1 pillar-1.6.2/pillar/tests/testthat/test-multi.R |only pillar-1.6.2/pillar/tests/testthat/test-num.R | 8 pillar-1.6.2/pillar/tests/testthat/test-options.R |only pillar-1.6.2/pillar/tests/testthat/test-tbl-format-footer.R | 59 + pillar-1.6.2/pillar/tests/testthat/test-tbl-format.R | 6 pillar-1.6.2/pillar/vignettes/digits.Rmd | 14 pillar-1.6.2/pillar/vignettes/numbers.Rmd | 17 96 files changed, 2302 insertions(+), 1546 deletions(-)
Title: A Fast and Lightweight R6 Parameter Interface
Description: By making use of 'set6', alongside the S3 and R6 paradigms, this package provides a fast and lightweight R6 interface for parameters and parameter sets.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>)
Maintainer: Raphael Sonabend <raphaelsonabend@gmail.com>
Diff between param6 versions 0.2.0 dated 2021-07-26 and 0.2.1 dated 2021-07-29
DESCRIPTION | 6 LICENSE | 2 MD5 | 70 - NAMESPACE | 55 - NEWS.md | 52 - R/ParameterSet.R | 871 ++++++++++---------- R/ParameterSet_S3methods.R | 417 ++++----- R/ParameterSet_helpers.R | 680 +++++++-------- R/ParameterSet_methods.R | 975 +++++++++++----------- R/cnd.R | 188 ++-- R/helpers.R | 258 +++--- R/prm.R | 250 ++--- R/support_dictionary.R | 116 +- R/tools.R | 67 + R/zzz.R | 30 README.md | 434 +++++----- man/ParameterSet.Rd | 1340 +++++++++++++++---------------- man/as.ParameterSet.Rd | 52 - man/as.data.table.ParameterSet.Rd | 42 man/as.prm.Rd | 44 - man/c.ParameterSet.Rd | 44 - man/cnd.Rd | 114 +- man/cpset.Rd | 50 - man/expect_equal_ps.Rd | 28 man/length.ParameterSet.Rd | 28 man/param6-package.Rd | 50 - man/prm.Rd | 122 +- man/pset.Rd | 106 +- man/rep.ParameterSet.Rd | 68 - man/sub-.ParameterSet.Rd | 34 man/support_dictionary.Rd | 32 tests/testthat.R | 4 tests/testthat/helpers.R | 6 tests/testthat/test-helpers.R | 218 ++--- tests/testthat/test-paramset.R | 1631 ++++++++++++++++++++------------------ tests/testthat/test-prm.R | 164 +-- 36 files changed, 4406 insertions(+), 4242 deletions(-)
Title: Fit Repeated Linear Regressions
Description: When fitting a set of linear regressions which have some same variables, we can separate the matrix and reduce the computation cost. This package aims to fit a set of repeated linear regressions faster. More details can be found in this blog Lijun Wang (2017) <https://stats.hohoweiya.xyz/regression/2017/09/26/An-R-Package-Fit-Repeated-Linear-Regressions/>.
Author: Lijun Wang [aut, cre, cph]
Maintainer: Lijun Wang <szcfweiya@gmail.com>
Diff between fRLR versions 1.2 dated 2021-07-28 and 1.2.1 dated 2021-07-29
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- inst/doc/fRLR.html | 24 ++++++++++++------------ src/Makevars.in | 7 +------ 4 files changed, 21 insertions(+), 26 deletions(-)
Title: Automated Analysis of Multiplex Digital PCR Data
Description: The automated clustering and quantification of the digital PCR
data is based on the combination of 'DBSCAN' (Hahsler et al. (2019)
<doi:10.18637/jss.v091.i01>) and 'c-means' (Bezdek et al. (1981)
<doi:10.1007/978-1-4757-0450-1>) algorithms.
The analysis is independent of multiplexing geometry, dPCR system,
and input amount.
The details about input data and parameters are available in the
vignette.
Author: Alfonso De Falco [aut, cre] (<https://orcid.org/0000-0001-9985-9920>),
Michel Mittelbronn [ctb],
Christophe Olinger [ctb],
Daniel Stieber [ctb],
Laboratoire national de santé [cph]
Maintainer: Alfonso De Falco <alfonsodefalco90@gmail.com>
Diff between dPCP versions 1.0.3 dated 2020-09-25 and 1.0.4 dated 2021-07-29
DESCRIPTION | 13 - MD5 | 10 - build/vignette.rds |binary inst/doc/dPCP_vignette.Rmd | 4 inst/doc/dPCP_vignette.html | 340 +++++++++++--------------------------------- vignettes/dPCP_vignette.Rmd | 4 6 files changed, 105 insertions(+), 266 deletions(-)
Title: Income Concentration Analysis with Complex Survey Samples
Description: Variance estimation on indicators of income concentration and
poverty using complex sample survey designs. Wrapper around the
'survey' package.
Author: Djalma Pessoa [aut],
Anthony Damico [aut, cre],
Guilherme Jacob [aut]
Maintainer: Anthony Damico <ajdamico@gmail.com>
Diff between convey versions 0.2.3 dated 2021-03-18 and 0.2.4 dated 2021-07-29
convey-0.2.3/convey/R/svyafc.R |only convey-0.2.3/convey/R/svyafcdec.R |only convey-0.2.3/convey/R/svyamato.R |only convey-0.2.3/convey/R/svybcc.R |only convey-0.2.3/convey/R/svybmi.R |only convey-0.2.3/convey/R/svyrenyi.R |only convey-0.2.3/convey/R/svysen.R |only convey-0.2.3/convey/R/svysst.R |only convey-0.2.3/convey/R/svyzenga.R |only convey-0.2.3/convey/R/svyzengacurve.R |only convey-0.2.3/convey/man/svyafc.Rd |only convey-0.2.3/convey/man/svyafcdec.Rd |only convey-0.2.3/convey/man/svyamato.Rd |only convey-0.2.3/convey/man/svybcc.Rd |only convey-0.2.3/convey/man/svybmi.Rd |only convey-0.2.3/convey/man/svyrenyi.Rd |only convey-0.2.3/convey/man/svysen.Rd |only convey-0.2.3/convey/man/svysst.Rd |only convey-0.2.3/convey/man/svyzenga.Rd |only convey-0.2.3/convey/man/svyzengacurve.Rd |only convey-0.2.3/convey/tests/testthat/test-extract_renyi-pos.R |only convey-0.2.3/convey/tests/testthat/test-extract_svyafc.R |only convey-0.2.3/convey/tests/testthat/test-extract_svyafcdec.R |only convey-0.2.3/convey/tests/testthat/test-extract_svyamato-pos.R |only convey-0.2.3/convey/tests/testthat/test-extract_svybcc.R |only convey-0.2.3/convey/tests/testthat/test-extract_svybmi.R |only convey-0.2.3/convey/tests/testthat/test-extract_svysen.R |only convey-0.2.3/convey/tests/testthat/test-extract_svysst.R |only convey-0.2.3/convey/tests/testthat/test-extract_svyzenga-pos.R |only convey-0.2.3/convey/tests/testthat/test-extract_svyzengacurve.R |only convey-0.2.4/convey/DESCRIPTION | 11 convey-0.2.4/convey/MD5 | 64 -- convey-0.2.4/convey/NAMESPACE | 40 - convey-0.2.4/convey/R/svyarpt.R | 4 convey-0.2.4/convey/R/svyiqalpha.R | 4 convey-0.2.4/convey/R/svyisq.R | 4 convey-0.2.4/convey/R/svylorenz.R | 14 convey-0.2.4/convey/R/svypoormed.R | 4 convey-0.2.4/convey/R/svyrmir.R | 6 convey-0.2.4/convey/man/svyarpt.Rd | 2 convey-0.2.4/convey/man/svyiqalpha.Rd | 2 convey-0.2.4/convey/man/svyisq.Rd | 2 convey-0.2.4/convey/man/svylorenz.Rd | 4 convey-0.2.4/convey/man/svypoormed.Rd | 2 convey-0.2.4/convey/man/svyrmir.Rd | 2 convey-0.2.4/convey/tests/testthat/Rplots.pdf |binary convey-0.2.4/convey/tests/testthat/test-matrix.R | 248 +++------ convey-0.2.4/convey/tests/testthat/test-skewed_distributions.R | 249 ++++------ 48 files changed, 232 insertions(+), 430 deletions(-)
Title: Binary Classification Using Extensions of Discriminant Analysis
Description: Implements methods for sample size
reduction within Linear and Quadratic Discriminant Analysis in Lapanowski and Gaynanova (2020) <arXiv:2005.03858>.
Also includes methods for non-linear discriminant analysis with simultaneous sparse feature selection in Lapanowski and Gaynanova (2019) PMLR 89:1704-1713.
Author: Alexander F. Lapanowski [aut, cre],
Irina Gaynanova [aut]
Maintainer: Alexander F. Lapanowski <aflapan@gmail.com>
Diff between biClassify versions 1.1 dated 2021-07-27 and 1.2 dated 2021-07-29
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/RcppExports.R | 4 ---- inst/doc/biClassify.pdf |binary src/RcppExports.cpp | 16 ---------------- src/sparseKOS.cpp | 14 -------------- 6 files changed, 9 insertions(+), 43 deletions(-)
Title: ILO Open Data via Ilostat Bulk Download Facility or SDMX Web
Service
Description: Tools to download data from the ilostat database
<https://ilostat.ilo.org> together with search and
manipulation utilities.
Author: ILO Department of Statistics [cph, fnd],
David Bescond [aut, cre] (<https://orcid.org/0000-0002-1642-0304>),
Mabelin Villarreal-Fuentes [ctb]
(<https://orcid.org/0000-0001-5644-5760>)
Maintainer: David Bescond <bescond@ilo.org>
Diff between Rilostat versions 1.1.7 dated 2021-03-16 and 1.1.8 dated 2021-07-29
DESCRIPTION | 14 +++++----- MD5 | 16 ++++++------ NAMESPACE | 6 ++++ NEWS.md | 4 +++ R/Rilostat.R | 5 +++ R/distribution_ilostat.r |only R/get_ilostat.R | 58 +++++++++++++++++++++++++++++++++++++------- README.md | 2 - man/distribution_ilostat.Rd |only man/get_ilostat.Rd | 20 +++++++++++++++ 10 files changed, 101 insertions(+), 24 deletions(-)
Title: Disease-Drived Differential Proteins Co-Expression Network
Analysis
Description: Functions designed to connect disease-related differential proteins and
co-expression network. It provides the basic statics analysis included t test, ANOVA analysis.
The network construction is not offered by the package, you can used 'WGCNA' package which you
can learn in Peter et al. (2008) <doi:10.1186/1471-2105-9-559>. It also provides module analysis
included PCA analysis, two enrichment analysis, Planner maximally filtered graph extraction and
hub analysis.
Author: Kefu Liu [aut, cre]
Maintainer: Kefu Liu <liukefu19@163.com>
Diff between DDPNA versions 0.2.7 dated 2021-04-28 and 0.3.0 dated 2021-07-29
DDPNA-0.2.7/DDPNA/data/datalist |only DDPNA-0.3.0/DDPNA/DESCRIPTION | 8 - DDPNA-0.3.0/DDPNA/MD5 | 9 - DDPNA-0.3.0/DDPNA/R/MaxquantDataconvert.R | 12 - DDPNA-0.3.0/DDPNA/R/missing_value_impute.R | 178 +++++++++----------------- DDPNA-0.3.0/DDPNA/man/missing_value_impute.Rd | 9 + 6 files changed, 82 insertions(+), 134 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-06 1.1.1
2020-01-12 1.1.0
2019-10-04 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-09 4.0.2
2020-07-13 4.0.1
2019-04-30 3.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-22 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-27 0.4.0
2020-04-07 0.3.2
2020-03-13 0.3.0
2018-10-15 0.2.0
2017-08-12 0.1.4
2017-05-15 0.1.2
2017-04-27 0.1.0