Title: Read 'Bibtex' Files and Convert Between Bibliography Formats
Description: Read and write 'Bibtex' files. Convert between bibliography
formats, including 'Bibtex', 'Biblatex', 'Endnote', and 'Bibentry'.
Includes a port of the 'bibutils' utilities by Chris Putnam
<https://sourceforge.net/projects/bibutils/>. Supports all
bibliography formats and character encodings implemented in
'bibutils'.
Author: Georgi N. Boshnakov [aut, cre] (R port, R code, new C code and
modifications to bibutils' C code, conversion to Bibentry (R and C
code)),
Chris Putman [aut] (src/*, author of the bibutils libraries,
https://sourceforge.net/projects/bibutils/),
Richard Mathar [ctb] (src/addsout.c),
Johannes Wilm [ctb] (src/biblatexin.c, src/bltypes.c)
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between rbibutils versions 2.2.1 dated 2021-06-17 and 2.2.2 dated 2021-07-31
DESCRIPTION | 8 +++---- MD5 | 11 +++++----- NEWS.md | 10 +++++++++ build/partial.rdb |binary inst/bib/easyPubMedvig_no_new_lines.xml |only src/medin.c | 33 ++++++++++++++++++++++++++++++-- tests/testthat/test-convert.R | 11 ++++++++++ 7 files changed, 62 insertions(+), 11 deletions(-)
Title: Latin Hypercube Designs (LHDs)
Description: Contains different algorithms and construction methods for optimal Latin hypercube designs (LHDs) with flexible sizes. Our package is comprehensive since it is capable of generating maximin distance LHDs, maximum projection LHDs, and orthogonal and nearly orthogonal LHDs. Detailed comparisons and summary of all the algorithms and construction methods in this package can be found at Hongzhi Wang, Qian Xiao and Abhyuday Mandal (2021) <arXiv:2010.09154>. This package is particularly useful in the area of Design and Analysis of Experiments (DAE). More specifically, design of computer experiments.
Author: Hongzhi Wang [aut, cre],
Qian Xiao [aut],
Abhyuday Mandal [aut]
Maintainer: Hongzhi Wang <hw34508@uga.edu>
Diff between LHD versions 1.3.2 dated 2021-04-05 and 1.3.3 dated 2021-07-31
DESCRIPTION | 20 MD5 | 18 NEWS.md | 4 R/GA.R | 28 - R/LaPSO.R | 48 -- R/OASA.R | 32 - R/SA.R | 32 - R/SA2008.R | 32 - R/SLHD.R | 48 -- inst/doc/Vignette_for_LHD.html | 869 ++++++++++++++++++++++++++++++----------- 10 files changed, 782 insertions(+), 349 deletions(-)
Title: Setting the Critical Path
Description: Solving the problem of project management using CPM (Critical Path Method), PERT (Program Evaluation and Review Technique)
and LESS (Least Cost Estimating and Scheduling) methods. The package sets the critical path,
schedule and Gantt chart. In addition, it allows you to draw a graph with marked critical activities. For more information about
project management, see: Taha H. A. (2017, ISBN:978-1-292-16554-7), Konarzewska I., Jewczak M., Kucharski A. (2020, ISBN:978-83-8220-112-3),
Rama Murthy P. (2007, ISBN:978-81-224-2944-2).
Author: Adam Kucharski
Maintainer: Adam Kucharski <aqcharski@interia.pl>
Diff between critpath versions 0.1.3 dated 2021-06-27 and 0.1.4 dated 2021-07-31
DESCRIPTION | 8 +- MD5 | 22 +++-- NAMESPACE | 2 NEWS | 4 + R/criticalpath_methodsAOE.R | 130 ++++++++++++++++++++++++++++++++++ build/vignette.rds |binary inst/doc/CPMandPERT.R | 18 ++++ inst/doc/CPMandPERT.Rmd | 47 ++++++++++-- inst/doc/CPMandPERT.html | 164 ++++++++++++++++++++++++++++++-------------- inst/doc/LESS.html | 5 - man/plot_alap.Rd |only man/plot_asap.Rd |only vignettes/CPMandPERT.Rmd | 47 ++++++++++-- 13 files changed, 362 insertions(+), 85 deletions(-)
Title: Explore 'Wikidata' Through Tidy Data Frames
Description: Query 'Wikidata' API <https://www.wikidata.org/wiki/Wikidata:Main_Page> with ease, get tidy data frames in response, and cache data in a local 'SQLite' database.
Author: Giorgio Comai [aut, cre, cph] (<https://orcid.org/0000-0002-0515-9542>),
EDJNet [fnd]
Maintainer: Giorgio Comai <g@giorgiocomai.eu>
Diff between tidywikidatar versions 0.3.0 dated 2021-06-07 and 0.4.0 dated 2021-07-31
DESCRIPTION | 8 - MD5 | 28 +++--- NAMESPACE | 3 NEWS.md | 6 + R/tw_get_cached_search.R | 2 R/tw_get_others.R | 30 +++++- R/tw_get_property.R | 133 ++++++++++++++++++++++++++++- R/tw_get_property_with_details.R |only R/tw_query.R | 13 +- README.md | 5 + man/tw_get_label.Rd | 10 ++ man/tw_get_property.Rd | 8 + man/tw_get_property_same_length.Rd |only man/tw_get_property_with_details.Rd |only man/tw_get_property_with_details_single.Rd |only man/tw_query.Rd | 13 +- tests/testthat/test-cache.R | 2 17 files changed, 223 insertions(+), 38 deletions(-)
Title: Supplementary Tools for R Packages Developers
Description: Supplementary utils for CRAN maintainers and R packages developers.
Validating the library or packages.
Exploring a complexity of a specific package like evaluating sizes in bytes of all its dependencies.
Assessing the life duration of a specific package version.
Checking a package CRAN check page status for any errors and warnings.
Retrieving a DESCRIPTION file for any package version.
Getting a list of all releases for a specific package.
Author: Maciej Nasinski [aut, cre]
Maintainer: Maciej Nasinski <nasinski.maciej@gmail.com>
Diff between pacs versions 0.2.5 dated 2021-07-29 and 0.2.8 dated 2021-07-31
pacs-0.2.5/pacs/man/pacs_checkred.Rd |only pacs-0.2.5/pacs/man/pacs_deps.Rd |only pacs-0.2.5/pacs/man/pacs_description.Rd |only pacs-0.2.5/pacs/man/pacs_health.Rd |only pacs-0.2.5/pacs/man/pacs_lifeduration.Rd |only pacs-0.2.5/pacs/man/pacs_size.Rd |only pacs-0.2.5/pacs/man/pacs_timemachine.Rd |only pacs-0.2.5/pacs/man/pacs_validate.Rd |only pacs-0.2.8/pacs/DESCRIPTION | 14 +- pacs-0.2.8/pacs/MD5 | 62 +++++------- pacs-0.2.8/pacs/NAMESPACE | 14 +- pacs-0.2.8/pacs/NEWS.md | 23 ++++ pacs-0.2.8/pacs/R/comapre.R | 12 ++ pacs-0.2.8/pacs/R/deps.R | 74 +-------------- pacs-0.2.8/pacs/R/deps_timemachine.R | 5 - pacs-0.2.8/pacs/R/description.R | 71 ++++---------- pacs-0.2.8/pacs/R/lifeduration.R | 124 +++++++++---------------- pacs-0.2.8/pacs/R/pacs.R |only pacs-0.2.8/pacs/R/size.R | 43 +------- pacs-0.2.8/pacs/R/timemachine.R | 46 +++------ pacs-0.2.8/pacs/R/utils.R | 125 ++++++++++++-------------- pacs-0.2.8/pacs/R/valid.R | 134 +++++++++------------------- pacs-0.2.8/pacs/README.md | 131 ++++++++++++--------------- pacs-0.2.8/pacs/man/lib_validate.Rd | 21 ++-- pacs-0.2.8/pacs/man/pac_checkred.Rd | 10 +- pacs-0.2.8/pacs/man/pac_compare_versions.Rd | 9 + pacs-0.2.8/pacs/man/pac_deps.Rd | 4 pacs-0.2.8/pacs/man/pac_deps_timemachine.Rd | 4 pacs-0.2.8/pacs/man/pac_description.Rd | 15 ++- pacs-0.2.8/pacs/man/pac_health.Rd | 15 ++- pacs-0.2.8/pacs/man/pac_last.Rd |only pacs-0.2.8/pacs/man/pac_lifeduration.Rd | 17 ++- pacs-0.2.8/pacs/man/pac_size.Rd | 2 pacs-0.2.8/pacs/man/pac_timemachine.Rd | 11 ++ pacs-0.2.8/pacs/man/pac_true_size.Rd | 7 - pacs-0.2.8/pacs/man/pac_validate.Rd | 15 ++- pacs-0.2.8/pacs/tests/testthat/test-base.R | 98 +++++--------------- 37 files changed, 474 insertions(+), 632 deletions(-)
Title: Adaptive Best Subset Selection in Polynomial Time
Description: Extremely efficient toolkit for solving the best subset selection problem in linear regression, logistic regression, Poisson regression, Cox proportional hazard model, multiple-response regression, multinomial logistic regression, and (sequential) principal component analysis. It implements and generalizes algorithms designed in <doi:10.1073/pnas.2014241117> that exploits a novel sequencing-and-splicing technique to guarantee exact support recovery and globally optimal solution in polynomial times.
Author: Jin Zhu [aut, cre] (<https://orcid.org/0000-0001-8550-5822>),
Kangkang Jiang [aut],
Yanhang Zhang [aut],
Liyuan Hu [aut],
Junhao Huang [aut],
Junxian Zhu [aut],
Canhong Wen [aut],
Heping Zhang [aut] (<https://orcid.org/0000-0002-0688-4076>),
Xueqin Wang [aut] (<https://orcid.org/0000-0001-5205-9950>),
spectra contributors [cph] (Spectra implementation)
Maintainer: Jin Zhu <zhuj37@mail2.sysu.edu.cn>
Diff between abess versions 0.1.0 dated 2021-04-21 and 0.2.0 dated 2021-07-31
abess-0.1.0/abess/inst/doc/abess-guide.R |only abess-0.1.0/abess/inst/doc/abess-guide.Rmd |only abess-0.1.0/abess/inst/doc/abess-guide.html |only abess-0.1.0/abess/src/powell.cpp |only abess-0.1.0/abess/src/tmp |only abess-0.1.0/abess/vignettes/abess-guide.Rmd |only abess-0.1.0/abess/vignettes/crime.jpg |only abess-0.2.0/abess/DESCRIPTION | 23 abess-0.2.0/abess/LICENSE |only abess-0.2.0/abess/MD5 | 170 - abess-0.2.0/abess/NAMESPACE | 65 abess-0.2.0/abess/NEWS.md | 20 abess-0.2.0/abess/R/RcppExports.R | 14 abess-0.2.0/abess/R/abess-package.R | 94 abess-0.2.0/abess/R/abess.R | 1856 ++++++----- abess-0.2.0/abess/R/abesspca.R |only abess-0.2.0/abess/R/coef.abess.R | 138 abess-0.2.0/abess/R/coef.abesspca.R |only abess-0.2.0/abess/R/deviance.abess.R | 98 abess-0.2.0/abess/R/extract.abess.R | 198 - abess-0.2.0/abess/R/omit |only abess-0.2.0/abess/R/plot.abess.R | 307 - abess-0.2.0/abess/R/predict.abess.R | 193 - abess-0.2.0/abess/R/print.abess.R | 64 abess-0.2.0/abess/R/print.abesspca.R |only abess-0.2.0/abess/R/tmp |only abess-0.2.0/abess/R/utility.R | 774 ++-- abess-0.2.0/abess/README.md | 93 abess-0.2.0/abess/build/vignette.rds |binary abess-0.2.0/abess/inst/CITATION | 32 abess-0.2.0/abess/inst/doc/v01-abess-guide.R |only abess-0.2.0/abess/inst/doc/v01-abess-guide.Rmd |only abess-0.2.0/abess/inst/doc/v01-abess-guide.html |only abess-0.2.0/abess/inst/include |only abess-0.2.0/abess/man/abess-package.Rd | 77 abess-0.2.0/abess/man/abess.Rd | 586 +-- abess-0.2.0/abess/man/abesspca.Rd |only abess-0.2.0/abess/man/coef.abess.Rd | 76 abess-0.2.0/abess/man/coef.abesspca.Rd |only abess-0.2.0/abess/man/deviance.abess.Rd | 66 abess-0.2.0/abess/man/extract.abess.Rd | 94 abess-0.2.0/abess/man/generate.data.Rd | 267 - abess-0.2.0/abess/man/plot.abess.Rd | 114 abess-0.2.0/abess/man/predict.abess.Rd | 88 abess-0.2.0/abess/man/print.abess.Rd | 70 abess-0.2.0/abess/man/print.abesspca.Rd |only abess-0.2.0/abess/man/trim32.Rd | 52 abess-0.2.0/abess/src/Algorithm.cpp | 10 abess-0.2.0/abess/src/Algorithm.h | 3260 ++++++-------------- abess-0.2.0/abess/src/Data.h | 22 abess-0.2.0/abess/src/Makevars | 2 abess-0.2.0/abess/src/Makevars.win | 2 abess-0.2.0/abess/src/Metric.h | 817 ----- abess-0.2.0/abess/src/RcppExports.cpp | 13 abess-0.2.0/abess/src/abess.cpp | 608 ++- abess-0.2.0/abess/src/abess.h | 22 abess-0.2.0/abess/src/model_fit.cpp | 944 ----- abess-0.2.0/abess/src/model_fit.h | 865 +++++ abess-0.2.0/abess/src/normalize.cpp | 12 abess-0.2.0/abess/src/normalize.h | 5 abess-0.2.0/abess/src/path.cpp | 814 +--- abess-0.2.0/abess/src/path.h | 461 ++ abess-0.2.0/abess/src/screening.cpp | 210 - abess-0.2.0/abess/src/screening.h | 211 + abess-0.2.0/abess/src/utilities.cpp | 514 +-- abess-0.2.0/abess/src/utilities.h | 133 abess-0.2.0/abess/tests/testthat/Rplots.pdf |only abess-0.2.0/abess/tests/testthat/test-abess-group.R |only abess-0.2.0/abess/tests/testthat/test-abess.R | 662 ++-- abess-0.2.0/abess/tests/testthat/test-abesspca.R |only abess-0.2.0/abess/tests/testthat/test-exception.R |only abess-0.2.0/abess/tests/testthat/test-generic.R | 225 - abess-0.2.0/abess/tests/testthat/test-screening.R | 304 - abess-0.2.0/abess/tests/testthat/test-sparse.R |only abess-0.2.0/abess/tests/testthat/utility.R |only abess-0.2.0/abess/vignettes/Hitters.csv |only abess-0.2.0/abess/vignettes/communities.data |only abess-0.2.0/abess/vignettes/lung.csv |only abess-0.2.0/abess/vignettes/readmeTiming.png |only abess-0.2.0/abess/vignettes/sgsplicing.png |only abess-0.2.0/abess/vignettes/train.csv |only abess-0.2.0/abess/vignettes/v01-abess-guide.Rmd |only 82 files changed, 7461 insertions(+), 8284 deletions(-)
Title: Utilities for the Forest Research Institute of the State
Baden-Wuerttemberg
Description: Miscellaneous utilities, tools and helper
functions for finding and searching files on disk, searching for and
removing R objects from the workspace.
These are utilities for packages
<https://CRAN.R-project.org/package=cleanr>,
<https://CRAN.R-project.org/package=document>,
<https://CRAN.R-project.org/package=fakemake>,
<https://CRAN.R-project.org/package=packager> and
<https://CRAN.R-project.org/package=rasciidoc>.
Does not import or depend on any third party package, but on core R
only (i.e. it may depend on packages with priority 'base').
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between fritools versions 2.2.0 dated 2021-07-26 and 2.2.1 dated 2021-07-31
DESCRIPTION | 12 ++++++------ MD5 | 23 +++++++++++++---------- NEWS.md | 5 +++++ R/convert_umlauts_to_tex.R | 6 +----- R/paths.R | 9 +++++++-- inst/NEWS.rd | 7 +++++++ inst/runit_tests/runit-csv.R | 7 ++----- inst/runit_tests/runit-memory_hogs.R | 10 +++++----- inst/runit_tests/runit-paths.R | 3 +-- inst/runit_tests/runit-with_dir.R | 5 ++--- inst/tinytest |only tests/testthat/test-csv.R |only tests/testthat/test-throw.R | 1 - tests/tinytest.R |only 14 files changed, 49 insertions(+), 39 deletions(-)
Title: Automates the Creation of New Statistical Analysis Projects
Description: Provides functions to
automatically build a directory structure for a new R
project. Using this structure, 'ProjectTemplate'
automates data loading, preprocessing, library
importing and unit testing.
Author: Aleksandar Blagotic [ctb],
Diego Valle-Jones [ctb],
Jeffrey Breen [ctb],
Joakim Lundborg [ctb],
John Myles White [aut, cph],
Josh Bode [ctb],
Kenton White [ctb, cre],
Kirill Mueller [ctb],
Matteo Redaelli [ctb],
Noah Lorang [ctb],
Patrick Schalk [ctb],
Dominik Schneider [ctb],
Gerold Hepp [ctb],
Zunaira Jamile [ctb]
Maintainer: Kenton White <jkentonwhite@gmail.com>
Diff between ProjectTemplate versions 0.10.1 dated 2021-02-08 and 0.10.2 dated 2021-07-31
DESCRIPTION | 19 - MD5 | 28 - NAMESPACE | 2 NEWS.md | 13 R/cache.R | 10 R/load.project.R | 2 build/partial.rdb |binary inst/defaults/templates/full/config/global.dcf | 2 inst/defaults/templates/minimal/config/global.dcf | 2 man/cache.Rd | 2 tests/testthat/test-cache.R | 318 +++++++++++----------- tests/testthat/test-list.R | 2 tests/testthat/test-load.R | 40 +- tests/testthat/test-qs.R | 26 + tests/testthat/test-readers.R | 34 ++ 15 files changed, 297 insertions(+), 203 deletions(-)
More information about ProjectTemplate at CRAN
Permanent link
Title: Create Beautiful, Simple Personal Websites
Description: A collection of R Markdown templates for creating simple and easy
to personalize single page websites.
Author: Sean Kross [aut, cre] (<https://orcid.org/0000-0001-5215-0316>)
Maintainer: Sean Kross <sean@seankross.com>
Diff between postcards versions 0.2.1 dated 2021-07-30 and 0.2.2 dated 2021-07-31
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ inst/pandoc_templates/solana.html | 4 ++-- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Linear Group Fixed Effects
Description: Transforms away factors with many levels prior to doing an OLS.
Useful for estimating linear models with multiple group fixed effects, and for
estimating linear models which uses factors with many levels as pure control variables. See Gaure (2013) <doi:10.1016/j.csda.2013.03.024>
Includes support for instrumental variables, conditional F statistics for weak instruments,
robust and multi-way clustered standard errors, as well as limited mobility bias correction (Gaure 2014 <doi:10.1002/sta4.68>).
WARNING: This package is NOT under active development anymore, no further improvements are to be expected, and the package is at risk of being removed from CRAN.
Author: Simen Gaure [aut] (<https://orcid.org/0000-0001-7251-8747>),
Grant McDermott [ctb],
Karl Dunkle Werner [ctb],
Matthieu Stigler [ctb, cre] (<https://orcid.org/0000-0002-6802-4290>),
Daniel Lüdecke [ctb]
Maintainer: Matthieu Stigler <Matthieu.Stigler@gmail.com>
Diff between lfe versions 2.8-6 dated 2021-01-11 and 2.8-7 dated 2021-07-31
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 7 ++++++- inst/devtools_internal.R | 6 ++++++ inst/doc/biascorrection.pdf |binary inst/doc/identification.pdf |binary inst/doc/lfehow.pdf |binary inst/doc/speed.pdf |binary src/utils.c | 11 +---------- tests/degenerate.Rout.save | 8 ++++---- 12 files changed, 32 insertions(+), 30 deletions(-)
Title: Isotope Calculations in R
Description: Perform common calculations based on published stable isotope theory, such as calculating carbon isotope discrimination and intrinsic water use efficiency from wood or leaf carbon isotope composition. See Farquhar, O'Leary, and Berry (1982) <doi:10.1071/PP9820121>.
Author: Justin Mathias
Maintainer: Justin Mathias <justin.m.mathias@gmail.com>
Diff between isocalcR versions 0.0.1 dated 2021-07-08 and 0.0.2 dated 2021-07-31
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ R/CO2data.R | 2 +- R/d13C.to.Ci.R | 2 +- R/d13C.to.CiCa.R | 2 +- R/d13C.to.diffCaCi.R | 2 +- R/d13C.to.iWUE.R | 2 +- README.md | 40 ++++++++++++++++++++++++++++++++++++++-- data/CO2data.rda |binary man/CO2data.Rd | 2 +- 11 files changed, 62 insertions(+), 22 deletions(-)
Title: Work with Datasets in the Ecological Community Design Pattern
Description: Tools to create, use, and convert 'ecocomDP' datasets. 'ecocomDP' is a dataset design pattern for harmonizing ecological community surveys in a research question agnostic format, from source datasets published across multiple repositories, and with methods that keep the derived datasets up-to-date as the underlying sources change. Described in O'Brien et al. (2021), <doi:10.1016/j.ecoinf.2021.101374>.
Author: Colin Smith [aut, cre, cph] (<https://orcid.org/0000-0003-2261-9931>),
Eric Sokol [aut] (<https://orcid.org/0000-0001-5923-0917>),
Margaret O'Brien [aut] (<https://orcid.org/0000-0002-1693-8322>),
Matt Bitters [ctb],
Melissa Chen [ctb],
Savannah Gonzales [ctb],
Matt Helmus [ctb],
Brendan Hobart [ctb],
Ruvi Jaimes [ctb],
Lara Janson [ctb],
Marta Jarzyna [ctb],
Michael Just [ctb],
Daijiang Li [ctb],
Wynne Moss [ctb],
Kari Norman [ctb],
Stephanie Parker [ctb],
Natalie Robinson [ctb],
Thilina Surasinghe [ctb]
Maintainer: Colin Smith <colin.smith@wisc.edu>
Diff between ecocomDP versions 1.0.0 dated 2021-06-10 and 1.1.0 dated 2021-07-31
DESCRIPTION | 21 LICENSE | 2 MD5 | 284 NAMESPACE | 66 NEWS.md | 32 R/EAL_make_eml.R | 2796 +++--- R/EAL_template_arguments.R | 896 +- R/EAL_validate.R | 1680 ++-- R/convert_to_dwca.R | 1491 +-- R/create_dataset_summary.R | 320 R/create_eml.R | 1377 +-- R/create_location.R | 376 R/create_location_ancillary.R | 125 R/create_observation.R | 138 R/create_observation_ancillary.R | 114 R/create_taxon.R | 126 R/create_taxon_ancillary.R | 145 R/create_variable_mapping.R | 258 R/data.R | 153 R/flatten_data.R | 806 + R/map_neon.ecocomdp.10003.001.001.R | 384 R/map_neon.ecocomdp.10022.001.001.R | 662 - R/map_neon.ecocomdp.10022.001.002.R | 758 - R/map_neon.ecocomdp.10043.001.001.R | 710 - R/map_neon.ecocomdp.10058.001.001.R | 472 - R/map_neon.ecocomdp.10072.001.001.R | 560 - R/map_neon.ecocomdp.10092.001.001.R | 730 - R/map_neon.ecocomdp.10093.001.001.R | 1368 +-- R/map_neon.ecocomdp.20107.001.001.R | 794 - R/map_neon.ecocomdp.20120.001.001.R | 484 - R/map_neon.ecocomdp.20166.001.001.R | 554 - R/map_neon.ecocomdp.20219.001.001.R | 374 R/map_neon_data_to_ecocomDP.r | 390 R/neon_helper_functions.r | 358 R/plot_taxa.R | 848 +- R/read_data.R | 981 +- R/save_data.R | 150 R/search_data.R | 812 +- R/taxonomyCleanr.R | 2856 +++---- R/utilities.R | 4048 +++++----- R/validate_arguments.R | 981 +- R/validate_data.R | 1620 ++-- R/zzz.R | 120 README.md | 122 build/vignette.rds |binary data/ants_L0_flat.rda |binary data/ants_L1.rda |binary inst/doc/convert.R | 142 inst/doc/convert.Rmd | 178 inst/doc/convert.html | 647 - inst/doc/create.R | 1155 +- inst/doc/create.Rmd | 1201 +- inst/doc/create.html | 1670 +--- inst/doc/use.R | 487 - inst/doc/use.Rmd | 632 - inst/doc/use.html | 1149 +- inst/extdata/L1_versions.txt | 26 inst/extdata/create_ecocomDP.R | 869 +- inst/extdata/dwca_event_core/annotations.txt | 58 inst/extdata/dwca_event_core/attributes_event.txt | 18 inst/extdata/dwca_event_core/attributes_extendedmeasurementorfact.txt | 16 inst/extdata/dwca_event_core/attributes_occurrence.txt | 18 inst/extdata/dwca_event_core/keywords.txt | 18 inst/extdata/dwca_event_core/meta.xml | 102 inst/extdata/eal_templates/annotation_defaults.txt | 14 inst/extdata/eal_templates/annotations.txt | 2 inst/extdata/eal_templates/arguments.txt | 88 inst/extdata/eal_templates/bounding_boxes.txt | 2 inst/extdata/eal_templates/custom_units.txt | 2 inst/extdata/eal_templates/geographic_coverage.txt | 2 inst/extdata/eal_templates/intellectual_rights_cc0.txt | 2 inst/extdata/eal_templates/intellectual_rights_ccby4.0.txt | 2 inst/extdata/eal_templates/keywords.txt | 2 inst/extdata/eal_templates/personnel.txt | 2 inst/extdata/eal_templates/provenance.txt | 2 inst/extdata/eal_templates/taxonomic_coverage.txt | 2 inst/extdata/eal_templates/template_characteristics.txt | 32 inst/extdata/ecocomDP/annotations.txt | 124 inst/extdata/ecocomDP/attributes_dataset_summary.txt | 16 inst/extdata/ecocomDP/attributes_location.txt | 14 inst/extdata/ecocomDP/attributes_location_ancillary.txt | 14 inst/extdata/ecocomDP/attributes_observation.txt | 20 inst/extdata/ecocomDP/attributes_observation_ancillary.txt | 12 inst/extdata/ecocomDP/attributes_taxon.txt | 12 inst/extdata/ecocomDP/attributes_taxon_ancillary.txt | 16 inst/extdata/ecocomDP/attributes_variable_mapping.txt | 14 inst/extdata/ecocomDP/keywords.txt | 18 inst/extdata/neon-field-sites.csv | 164 inst/extdata/neon_data_products_for_ecocomDP.txt | 26 inst/extdata/table_descriptions.txt | 18 inst/extdata/template_characteristics.txt | 32 inst/extdata/validation_criteria.txt | 120 man/ants_L0_flat.Rd | 133 man/ants_L1.Rd | 54 man/calc_geo_extent_bounding_box_m2.Rd | 46 man/calc_length_of_survey_years.Rd | 34 man/calc_number_of_years_sampled.Rd | 34 man/calc_std_dev_interval_betw_years.Rd | 34 man/convert_to_dwca.Rd | 124 man/create_dataset_summary.Rd | 122 man/create_eml.Rd | 242 man/create_location.Rd | 115 man/create_location_ancillary.Rd | 94 man/create_observation.Rd | 138 man/create_observation_ancillary.Rd | 88 man/create_taxon.Rd | 110 man/create_taxon_ancillary.Rd | 110 man/create_variable_mapping.Rd | 158 man/flatten_data.Rd | 64 man/plot_taxa_accum_sites.Rd | 56 man/plot_taxa_accum_time.Rd | 56 man/plot_taxa_diversity.Rd | 56 man/plot_taxa_sample_time.Rd | 56 man/plot_taxa_shared_sites.Rd | 52 man/read_data.Rd | 274 man/save_data.Rd | 104 man/search_data.Rd | 150 man/validate_data.Rd | 124 man/view_descriptions.Rd | 40 man/view_diagram.Rd | 40 man/write_tables.Rd | 170 tests/testthat.R | 8 tests/testthat/test_convert_to_dwca.R | 68 tests/testthat/test_create_dataset_summary.R | 216 tests/testthat/test_create_eml.R | 108 tests/testthat/test_create_location.R | 94 tests/testthat/test_create_location_ancillary.R | 60 tests/testthat/test_create_observation.R | 74 tests/testthat/test_create_observation_ancillary.R | 60 tests/testthat/test_create_taxon.R | 66 tests/testthat/test_create_taxon_ancillary.R | 70 tests/testthat/test_create_variable_mapping.R | 122 tests/testthat/test_flatten_data.R | 308 tests/testthat/test_plot_taxa.R | 60 tests/testthat/test_read_data.R | 360 tests/testthat/test_save_data.R | 104 tests/testthat/test_search_data.R | 396 tests/testthat/test_utilities.R | 191 tests/testthat/test_validate_arguments.R | 1002 +- tests/testthat/test_validate_data.R | 1020 +- vignettes/convert.Rmd | 178 vignettes/create.Rmd | 1201 +- vignettes/use.Rmd | 632 - 143 files changed, 25463 insertions(+), 25315 deletions(-)
Title: Testing 'DBI' 'Backends'
Description: A helper that tests 'DBI' back ends for conformity
to the interface.
Author: Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
RStudio [cph],
R Consortium [fnd]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between DBItest versions 1.7.0 dated 2019-12-16 and 1.7.1 dated 2021-07-31
DESCRIPTION | 19 MD5 | 160 ++-- NAMESPACE | 1 NEWS.md | 31 R/context.R | 2 R/expectations.R | 9 R/import-testthat.R | 2 R/run.R | 88 +- R/s4.R | 9 R/spec-compliance-methods.R | 32 R/spec-compliance.R | 2 R/spec-connection-data-type.R | 8 R/spec-connection-disconnect.R | 16 R/spec-connection-get-info.R | 63 - R/spec-driver-connect.R | 67 - R/spec-driver-constructor.R | 11 R/spec-driver-data-type.R | 31 R/spec-driver-get-info.R | 5 R/spec-getting-started.R | 7 R/spec-meta-bind-.R | 36 - R/spec-meta-bind-runner.R | 22 R/spec-meta-bind-tester-extra.R | 2 R/spec-meta-bind.R | 336 ++++----- R/spec-meta-column-info.R | 194 ++--- R/spec-meta-get-info-result.R | 63 - R/spec-meta-get-row-count.R | 172 ++-- R/spec-meta-get-rows-affected.R | 104 +- R/spec-meta-get-statement.R | 76 -- R/spec-meta-has-completed.R | 126 +-- R/spec-meta-is-valid.R | 68 - R/spec-result-clear-result.R | 47 - R/spec-result-create-table-with-data-type.R | 48 - R/spec-result-execute.R | 95 +- R/spec-result-fetch.R | 373 ++++------ R/spec-result-get-query.R | 235 ++---- R/spec-result-roundtrip.R | 312 +++----- R/spec-result-send-query.R | 141 +-- R/spec-result-send-statement.R | 160 +--- R/spec-result.R | 4 R/spec-sql-append-table.R | 676 ++++++++---------- R/spec-sql-create-table.R | 320 +++----- R/spec-sql-exists-table.R | 140 +-- R/spec-sql-list-fields.R | 139 +-- R/spec-sql-list-objects.R | 242 +++--- R/spec-sql-list-tables.R | 117 +-- R/spec-sql-quote-identifier.R | 276 +++---- R/spec-sql-quote-literal.R | 240 +++--- R/spec-sql-quote-string.R | 274 +++---- R/spec-sql-read-table.R | 361 ++++------ R/spec-sql-remove-table.R | 221 ++---- R/spec-sql-unquote-identifier.R | 254 +++---- R/spec-sql-write-table.R | 1006 ++++++++++++---------------- R/spec-transaction-begin-commit-rollback.R | 234 ++---- R/spec-transaction-with-transaction.R | 145 +--- R/spec-transaction.R | 2 R/test-all.R | 19 R/tweaks.R | 39 - R/utils.R | 134 +-- R/zzz.R | 2 README.md | 7 build/vignette.rds |binary inst/WORDLIST |only inst/doc/DBItest.R | 10 inst/doc/DBItest.Rmd | 37 - inst/doc/DBItest.html | 380 ++-------- man/context.Rd | 2 man/spec_compliance_methods.Rd |only man/spec_driver_constructor.Rd |only man/spec_getting_started.Rd |only man/spec_meta_bind.Rd | 7 man/spec_result_roundtrip.Rd | 2 man/spec_sql_append_table.Rd | 3 man/spec_sql_create_table.Rd | 3 man/spec_sql_exists_table.Rd | 1 man/spec_sql_list_objects.Rd | 5 man/spec_sql_list_tables.Rd | 5 man/spec_sql_read_table.Rd | 2 man/spec_sql_write_table.Rd | 1 man/test_all.Rd | 8 man/tweaks.Rd | 8 tests/testthat/test-consistency.R | 15 tests/testthat/test-lint.R | 2 vignettes/DBItest.Rmd | 37 - 83 files changed, 3908 insertions(+), 4645 deletions(-)
Title: Tools for Choice Model Estimation and Application
Description: The Choice Modelling Centre (CMC) at the University of Leeds
has developed flexible code for the estimation and application
of choice models in R. Users are able to write their own
model functions or use a mix of already available ones. Random heterogeneity,
both continuous and discrete and at the level of individuals and
choices, can be incorporated for all models. There is support for both standalone
models and hybrid model structures. Both classical
and Bayesian estimation is available, and multiple discrete
continuous models are covered in addition to discrete choice.
Multi-threading processing is supported for estimation and a large
number of pre and post-estimation routines, including for computing posterior
(individual-level) distributions are available.
For examples, a manual, and a support forum, visit
<http://www.ApolloChoiceModelling.com>. For more information on choice
models see Train, K. (2009) <isbn:978-0-521-74738-7> and Hess,
S. & Daly, A.J. (2014) <isbn:978-1-781-00314-5> for an overview
of the field.
Author: Stephane Hess [aut],
David Palma [aut, cre],
Thomas Hancock [ctb]
Maintainer: David Palma <D.Palma@leeds.ac.uk>
Diff between apollo versions 0.2.4 dated 2021-02-25 and 0.2.5 dated 2021-07-31
apollo-0.2.4/apollo/R/apollo_cppScript.R |only apollo-0.2.4/apollo/R/apollo_lcUnconditionals.r |only apollo-0.2.4/apollo/man/apollo_cppScript.Rd |only apollo-0.2.5/apollo/DESCRIPTION | 14 apollo-0.2.5/apollo/MD5 | 134 +- apollo-0.2.5/apollo/NAMESPACE | 9 apollo-0.2.5/apollo/R/apollo_attach.R | 13 apollo-0.2.5/apollo/R/apollo_avgInterDraws.R | 8 apollo-0.2.5/apollo/R/apollo_avgIntraDraws.R | 8 apollo-0.2.5/apollo/R/apollo_basTest.R | 27 apollo-0.2.5/apollo/R/apollo_bootstrap.R | 21 apollo-0.2.5/apollo/R/apollo_choiceAnalysis.R | 23 apollo-0.2.5/apollo/R/apollo_classAlloc.R |only apollo-0.2.5/apollo/R/apollo_combineModels.R | 2 apollo-0.2.5/apollo/R/apollo_combineResults.R | 147 +- apollo-0.2.5/apollo/R/apollo_compareInputs.R | 8 apollo-0.2.5/apollo/R/apollo_dVdB.R | 53 apollo-0.2.5/apollo/R/apollo_estimate.R | 156 +- apollo-0.2.5/apollo/R/apollo_estimateHB.R | 35 apollo-0.2.5/apollo/R/apollo_expandLoop.R |only apollo-0.2.5/apollo/R/apollo_fmnl.R |only apollo-0.2.5/apollo/R/apollo_insertFunc.R | 244 ++- apollo-0.2.5/apollo/R/apollo_lc.R | 60 apollo-0.2.5/apollo/R/apollo_lcUnconditionals.R |only apollo-0.2.5/apollo/R/apollo_lrTest.R | 31 apollo-0.2.5/apollo/R/apollo_makeCluster.R | 2 apollo-0.2.5/apollo/R/apollo_makeDraws.R | 4 apollo-0.2.5/apollo/R/apollo_makeGrad.R | 28 apollo-0.2.5/apollo/R/apollo_makeLogLike.R | 74 - apollo-0.2.5/apollo/R/apollo_mdcev.R | 73 - apollo-0.2.5/apollo/R/apollo_mdcev2.R |only apollo-0.2.5/apollo/R/apollo_mdcnev.R | 3 apollo-0.2.5/apollo/R/apollo_mnl.R | 28 apollo-0.2.5/apollo/R/apollo_modelOutput.R | 21 apollo-0.2.5/apollo/R/apollo_nl.R | 6 apollo-0.2.5/apollo/R/apollo_normalDensity.R | 6 apollo-0.2.5/apollo/R/apollo_ol.R | 2 apollo-0.2.5/apollo/R/apollo_outOfSample.R | 9 apollo-0.2.5/apollo/R/apollo_panelProd.R | 12 apollo-0.2.5/apollo/R/apollo_prediction.R | 529 ++++---- apollo-0.2.5/apollo/R/apollo_prepareProb.R | 303 ++-- apollo-0.2.5/apollo/R/apollo_preprocess.R | 133 +- apollo-0.2.5/apollo/R/apollo_readBeta.R | 24 apollo-0.2.5/apollo/R/apollo_saveOutput.R | 44 apollo-0.2.5/apollo/R/apollo_searchStart.R | 3 apollo-0.2.5/apollo/R/apollo_validate.R | 109 + apollo-0.2.5/apollo/R/apollo_validateControl.R | 12 apollo-0.2.5/apollo/R/apollo_validateInputs.R | 5 apollo-0.2.5/apollo/R/apollo_varList.R | 312 ++-- apollo-0.2.5/apollo/R/apollo_varcov.R | 14 apollo-0.2.5/apollo/R/apollo_writeF12.R | 4 apollo-0.2.5/apollo/R/apollo_writeTheta.R | 20 apollo-0.2.5/apollo/inst/doc/apollofirstexample.R | 12 apollo-0.2.5/apollo/inst/doc/apollofirstexample.Rmd | 812 ++++++------ apollo-0.2.5/apollo/inst/doc/apollofirstexample.html | 1240 ++++++++----------- apollo-0.2.5/apollo/man/apollo_bootstrap.Rd | 9 apollo-0.2.5/apollo/man/apollo_choiceAnalysis.Rd | 1 apollo-0.2.5/apollo/man/apollo_classAlloc.Rd |only apollo-0.2.5/apollo/man/apollo_combineResults.Rd | 2 apollo-0.2.5/apollo/man/apollo_estimate.Rd | 4 apollo-0.2.5/apollo/man/apollo_expandLoop.Rd |only apollo-0.2.5/apollo/man/apollo_fmnl.Rd |only apollo-0.2.5/apollo/man/apollo_insertFunc.Rd | 4 apollo-0.2.5/apollo/man/apollo_lcUnconditionals.Rd | 2 apollo-0.2.5/apollo/man/apollo_makeLogLike.Rd | 2 apollo-0.2.5/apollo/man/apollo_mdcev.Rd | 3 apollo-0.2.5/apollo/man/apollo_mdcev2.Rd |only apollo-0.2.5/apollo/man/apollo_nl.Rd | 2 apollo-0.2.5/apollo/man/apollo_prediction.Rd | 1 apollo-0.2.5/apollo/man/apollo_saveOutput.Rd | 4 apollo-0.2.5/apollo/man/apollo_validateControl.Rd | 1 apollo-0.2.5/apollo/man/apollo_varList.Rd | 28 apollo-0.2.5/apollo/man/apollo_varcov.Rd | 2 apollo-0.2.5/apollo/vignettes/apollofirstexample.Rmd | 812 ++++++------ 74 files changed, 3079 insertions(+), 2635 deletions(-)
Title: Pretty Notifications for 'Shiny'
Description: This is a wrapper of the 'React' library 'React-Toastify'. It allows to show some notifications (toasts) in 'Shiny' applications. There are options for the style, the position, the transition effect, and more.
Author: Stéphane Laurent [aut, cre],
Fadi Khadra [cph] ('React-Toastify' library
(https://fkhadra.github.io/react-toastify/introduction))
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between shinyToastify versions 1.0.0 dated 2021-07-15 and 2.0.0 dated 2021-07-31
DESCRIPTION | 8 MD5 | 21 +- NAMESPACE | 3 NEWS.md | 17 ++ R/toastify.R | 197 ++++++++++++++++++++++-- README.md | 4 inst/examples/icons |only inst/examples/toastUpdate |only inst/www/shinyToastify/toastify/toastify.js | 49 +++++ inst/www/shinyToastify/toastify/toastify.js.map | 2 man/showToast.Rd | 23 ++ man/toastUpdate.Rd |only 12 files changed, 294 insertions(+), 30 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-29 1.2
2019-07-02 1.1
2019-06-30 1.0
2019-02-04 0.4
2018-06-16 0.3
2018-04-09 0.2
2018-02-21 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-03 0.5.3
2014-02-13 0.5.2
2013-12-11 0.5.1
2012-01-02 0.5.0
2011-10-03 0.4.4
2011-07-25 0.4.3
2011-07-23 0.4.2
2011-03-21 0.4.1
2011-03-17 0.4
2010-11-02 0.3.7
2010-10-19 0.3.6
2010-10-16 0.3.5
2010-08-22 0.3.4
2010-08-18 0.3.3
2010-08-17 0.3.2
2010-08-16 0.3.1
2010-08-10 0.3
2010-06-08 0.2
2009-12-01 0.1.2
2009-09-03 0.1.1
2009-08-13 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-26 0.3.2
2021-06-02 0.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-14 1.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-10 0.2.4
2018-12-10 0.1.9
2018-10-12 0.1.6
Title: Tidy Interface to 'data.table'
Description: A tidy interface to 'data.table' that is 'rlang' compatible,
giving users the speed of 'data.table' with the clean syntax of the tidyverse.
Author: Mark Fairbanks [aut, cre],
Abdessabour Moutik [ctb],
Matt Carlson [ctb],
Ivan Leung [ctb],
Ross Kennedy [ctb]
Maintainer: Mark Fairbanks <mark.t.fairbanks@gmail.com>
Diff between tidytable versions 0.6.3 dated 2021-06-22 and 0.6.4 dated 2021-07-31
tidytable-0.6.3/tidytable/tests/testthat/test-arrange_across.R |only tidytable-0.6.3/tidytable/tests/testthat/test-mutate_across.R |only tidytable-0.6.3/tidytable/tests/testthat/test-summarize_across.R |only tidytable-0.6.4/tidytable/DESCRIPTION | 6 tidytable-0.6.4/tidytable/MD5 | 94 +++++----- tidytable-0.6.4/tidytable/NAMESPACE | 11 - tidytable-0.6.4/tidytable/NEWS.md | 22 ++ tidytable-0.6.4/tidytable/R/arrange_across.R | 2 tidytable-0.6.4/tidytable/R/between.R | 15 - tidytable-0.6.4/tidytable/R/bind.R | 4 tidytable-0.6.4/tidytable/R/case_when.R | 2 tidytable-0.6.4/tidytable/R/fill.R | 24 -- tidytable-0.6.4/tidytable/R/filter.R | 21 ++ tidytable-0.6.4/tidytable/R/get_dummies.R | 19 -- tidytable-0.6.4/tidytable/R/mutate.R | 16 + tidytable-0.6.4/tidytable/R/mutate_across.R | 2 tidytable-0.6.4/tidytable/R/n_distinct.R | 20 +- tidytable-0.6.4/tidytable/R/pivot_longer.R | 23 -- tidytable-0.6.4/tidytable/R/pivot_wider.R | 48 ++--- tidytable-0.6.4/tidytable/R/pull.R | 16 + tidytable-0.6.4/tidytable/R/separate.R | 17 + tidytable-0.6.4/tidytable/R/separate_rows.R | 8 tidytable-0.6.4/tidytable/R/summarize_across.R | 2 tidytable-0.6.4/tidytable/R/tidytable-package.R | 7 tidytable-0.6.4/tidytable/R/tidytable.R | 11 - tidytable-0.6.4/tidytable/R/unite.R | 4 tidytable-0.6.4/tidytable/R/unnest.R | 70 +++++-- tidytable-0.6.4/tidytable/R/unnest_longer.R |only tidytable-0.6.4/tidytable/R/unnest_wider.R |only tidytable-0.6.4/tidytable/R/utils-general.R | 52 +++++ tidytable-0.6.4/tidytable/R/utils-prep_exprs.R | 42 +++- tidytable-0.6.4/tidytable/man/between..Rd | 15 - tidytable-0.6.4/tidytable/man/mutate..Rd | 9 tidytable-0.6.4/tidytable/man/pivot_wider..Rd | 11 - tidytable-0.6.4/tidytable/man/pull..Rd | 4 tidytable-0.6.4/tidytable/man/reexports.Rd | 3 tidytable-0.6.4/tidytable/man/separate..Rd | 3 tidytable-0.6.4/tidytable/man/unnest..Rd | 17 + tidytable-0.6.4/tidytable/man/unnest_longer..Rd |only tidytable-0.6.4/tidytable/man/unnest_wider..Rd |only tidytable-0.6.4/tidytable/tests/testthat/test-bind.R | 28 ++ tidytable-0.6.4/tidytable/tests/testthat/test-deprec-across.R |only tidytable-0.6.4/tidytable/tests/testthat/test-filter.R | 6 tidytable-0.6.4/tidytable/tests/testthat/test-mutate.R | 9 tidytable-0.6.4/tidytable/tests/testthat/test-n_distinct.R | 14 - tidytable-0.6.4/tidytable/tests/testthat/test-pivot_longer.R | 4 tidytable-0.6.4/tidytable/tests/testthat/test-pivot_wider.R | 2 tidytable-0.6.4/tidytable/tests/testthat/test-pull.R | 11 + tidytable-0.6.4/tidytable/tests/testthat/test-separate.R | 10 + tidytable-0.6.4/tidytable/tests/testthat/test-tidytable.R | 9 tidytable-0.6.4/tidytable/tests/testthat/test-unnest.R | 20 ++ tidytable-0.6.4/tidytable/tests/testthat/test-unnest_longer.R |only tidytable-0.6.4/tidytable/tests/testthat/test-unnest_wider.R |only 53 files changed, 499 insertions(+), 234 deletions(-)
Title: Monotonic Optimal Binning
Description: Generate the monotonic binning and
perform the woe (weight of evidence) transformation for the logistic regression
used in the consumer credit scorecard development. The woe transformation is a piecewise
transformation that is linear to the log odds. For a numeric variable, all of its monotonic
functional transformations will converge to the same woe transformation.
Author: WenSui Liu
Maintainer: WenSui Liu <liuwensui@gmail.com>
Diff between mob versions 0.4.1 dated 2021-04-05 and 0.4.2 dated 2021-07-31
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/pool_bin.R | 11 ++++++++--- man/pool_bin.Rd | 6 ++++-- 4 files changed, 18 insertions(+), 11 deletions(-)
Title: Grammar Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Geomas: geom_table(), geom_plot() and geom_grob() add insets to
plots using native data coordinates, while geom_table_npc(), geom_plot_npc()
and geom_grob_npc() do the same using "npc" coordinates through new
aesthetics "npcx" and "npcy". Statistics: select observations based on 2D
density. Positions: radial nudging away from a center point and nudging away
from a line or curve.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Kamil Slowikowski [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpp versions 0.4.1 dated 2021-07-14 and 0.4.2 dated 2021-07-31
DESCRIPTION | 10 MD5 | 48 +-- NAMESPACE | 4 NEWS.md | 46 ++- R/geom-text-linked.r | 23 + R/geom-text-npc.r | 1 R/stat-apply.R | 531 ++++++++++++++++++++++++++------------- R/stat-dens1d-filter.r | 20 - R/stat-dens1d-labels.r | 85 +++--- R/stat-dens2d-filter.r | 20 - R/stat-dens2d-labels.r | 61 ++-- R/stat-quadrant-counts.R | 20 - inst/doc/grammar-extensions.R | 91 +++--- inst/doc/grammar-extensions.Rmd | 132 ++++----- inst/doc/grammar-extensions.html | 34 +- man/geom_text_linked.Rd | 2 man/geom_text_npc.Rd | 1 man/ggpp-ggproto.Rd | 148 +++++----- man/stat_apply.Rd | 448 ++++++++++++++++++-------------- man/stat_dens1d_filter.Rd | 20 - man/stat_dens1d_labels.Rd | 85 +++--- man/stat_dens2d_filter.Rd | 20 - man/stat_dens2d_labels.Rd | 61 ++-- man/stat_quadrant_counts.Rd | 20 - vignettes/grammar-extensions.Rmd | 132 ++++----- 25 files changed, 1218 insertions(+), 845 deletions(-)