Title: Interactive R Unit Tests
Description: Simplifies regression tests by comparing objects produced by test
code with earlier versions of those same objects. If objects are unchanged
the tests pass, otherwise execution stops with error details. If in
interactive mode, tests can be reviewed through the provided interactive
environment.
Author: Brodie Gaslam [aut, cre],
R Core Team [cph] (Traceback function sources.)
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between unitizer versions 1.4.14 dated 2021-04-30 and 1.4.15 dated 2021-08-01
unitizer-1.4.14/unitizer/tests/aunitizer.R |only unitizer-1.4.14/unitizer/tests/interactive |only unitizer-1.4.14/unitizer/tests/runtt.R |only unitizer-1.4.14/unitizer/tests/test_pkgs |only unitizer-1.4.14/unitizer/tests/testpkg1.R |only unitizer-1.4.14/unitizer/tests/testthat/helper |only unitizer-1.4.14/unitizer/tests/testthat/testthat.browse.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.capture.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.change.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.demo.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.error.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.exec.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.get.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.global.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.handledruns.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.inpkg.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.ischecks.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.item.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.list.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.misc.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.options.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.parse.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.prompt.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.random.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.rrename.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.rrepairenvs.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.search.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.section.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.shim.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.state.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.text.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.translate.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.upgrade.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.utz1.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.utz2.R |only unitizer-1.4.14/unitizer/tests/testthat/testthat.zzrunlast.R |only unitizer-1.4.14/unitizer/tests/unitizer |only unitizer-1.4.15/unitizer/DESCRIPTION | 10 unitizer-1.4.15/unitizer/MD5 | 395 +++------- unitizer-1.4.15/unitizer/NEWS.md | 18 unitizer-1.4.15/unitizer/R/browse.R | 92 +- unitizer-1.4.15/unitizer/R/browse.struct.R | 19 unitizer-1.4.15/unitizer/R/exec.R | 11 unitizer-1.4.15/unitizer/R/faux_prompt.R | 55 + unitizer-1.4.15/unitizer/R/get.R | 5 unitizer-1.4.15/unitizer/R/load.R | 162 ---- unitizer-1.4.15/unitizer/R/misc.R | 4 unitizer-1.4.15/unitizer/R/options.R | 28 unitizer-1.4.15/unitizer/R/prompt.R | 31 unitizer-1.4.15/unitizer/R/rename.R | 10 unitizer-1.4.15/unitizer/R/repairenvs.R | 5 unitizer-1.4.15/unitizer/R/translate.R | 174 ++-- unitizer-1.4.15/unitizer/R/unitize.R | 25 unitizer-1.4.15/unitizer/R/unitize.core.R | 287 +++---- unitizer-1.4.15/unitizer/R/unitizer.R | 20 unitizer-1.4.15/unitizer/R/unitizer.add.R | 6 unitizer-1.4.15/unitizer/R/upgrade.R | 46 + unitizer-1.4.15/unitizer/README.md | 7 unitizer-1.4.15/unitizer/build/vignette.rds |binary unitizer-1.4.15/unitizer/demo/unitizer.R | 2 unitizer-1.4.15/unitizer/inst/doc/u0_unitizer_index.html | 40 - unitizer-1.4.15/unitizer/inst/doc/u1_intro.html | 49 - unitizer-1.4.15/unitizer/inst/doc/u2_tests.html | 40 - unitizer-1.4.15/unitizer/inst/doc/u3_interactive-env.Rmd | 6 unitizer-1.4.15/unitizer/inst/doc/u3_interactive-env.html | 42 - unitizer-1.4.15/unitizer/inst/doc/u4_reproducible-tests.html | 40 - unitizer-1.4.15/unitizer/inst/doc/u5_miscellaneous.html | 40 - unitizer-1.4.15/unitizer/man/editCalls.Rd | 13 unitizer-1.4.15/unitizer/man/infer_unitizer_location.Rd | 5 unitizer-1.4.15/unitizer/man/repair_environments.Rd | 6 unitizer-1.4.15/unitizer/man/testthat_transcribe_file.Rd | 5 unitizer-1.4.15/unitizer/man/testthat_translate_file.Rd | 58 - unitizer-1.4.15/unitizer/man/unitize.Rd | 16 unitizer-1.4.15/unitizer/man/unitizer.opts.Rd | 3 unitizer-1.4.15/unitizer/man/unitizer_prompt.Rd | 6 unitizer-1.4.15/unitizer/tests/_helper |only unitizer-1.4.15/unitizer/tests/aammrtf |only unitizer-1.4.15/unitizer/tests/t-browser.R |only unitizer-1.4.15/unitizer/tests/t-browser.Rout.save |only unitizer-1.4.15/unitizer/tests/t-capture.R |only unitizer-1.4.15/unitizer/tests/t-capture.Rout.save |only unitizer-1.4.15/unitizer/tests/t-change.R |only unitizer-1.4.15/unitizer/tests/t-change.Rout.save |only unitizer-1.4.15/unitizer/tests/t-demo.R |only unitizer-1.4.15/unitizer/tests/t-demo.Rout.save |only unitizer-1.4.15/unitizer/tests/t-error.R |only unitizer-1.4.15/unitizer/tests/t-error.Rout.save |only unitizer-1.4.15/unitizer/tests/t-exec.R |only unitizer-1.4.15/unitizer/tests/t-exec.Rout.save |only unitizer-1.4.15/unitizer/tests/t-get.R |only unitizer-1.4.15/unitizer/tests/t-get.Rout.save |only unitizer-1.4.15/unitizer/tests/t-global.R |only unitizer-1.4.15/unitizer/tests/t-global.Rout.save |only unitizer-1.4.15/unitizer/tests/t-handledruns.R |only unitizer-1.4.15/unitizer/tests/t-handledruns.Rout.save |only unitizer-1.4.15/unitizer/tests/t-ischecks.R |only unitizer-1.4.15/unitizer/tests/t-ischecks.Rout.save |only unitizer-1.4.15/unitizer/tests/t-item.R |only unitizer-1.4.15/unitizer/tests/t-item.Rout.save |only unitizer-1.4.15/unitizer/tests/t-list.R |only unitizer-1.4.15/unitizer/tests/t-list.Rout.save |only unitizer-1.4.15/unitizer/tests/t-misc.R |only unitizer-1.4.15/unitizer/tests/t-misc.Rout.save |only unitizer-1.4.15/unitizer/tests/t-nav.R |only unitizer-1.4.15/unitizer/tests/t-nav.Rout.save |only unitizer-1.4.15/unitizer/tests/t-parse.R |only unitizer-1.4.15/unitizer/tests/t-parse.Rout.save |only unitizer-1.4.15/unitizer/tests/t-prompt.R |only unitizer-1.4.15/unitizer/tests/t-prompt.Rout.save |only unitizer-1.4.15/unitizer/tests/t-random.R |only unitizer-1.4.15/unitizer/tests/t-random.Rout.save |only unitizer-1.4.15/unitizer/tests/t-rename.R |only unitizer-1.4.15/unitizer/tests/t-rename.Rout.save |only unitizer-1.4.15/unitizer/tests/t-repairenvs.R |only unitizer-1.4.15/unitizer/tests/t-repairenvs.Rout.save |only unitizer-1.4.15/unitizer/tests/t-search.R |only unitizer-1.4.15/unitizer/tests/t-search.Rout.save |only unitizer-1.4.15/unitizer/tests/t-section.R |only unitizer-1.4.15/unitizer/tests/t-section.Rout.save |only unitizer-1.4.15/unitizer/tests/t-shim.R |only unitizer-1.4.15/unitizer/tests/t-shim.Rout.save |only unitizer-1.4.15/unitizer/tests/t-state.R |only unitizer-1.4.15/unitizer/tests/t-state.Rout.save |only unitizer-1.4.15/unitizer/tests/t-text.R |only unitizer-1.4.15/unitizer/tests/t-text.Rout.save |only unitizer-1.4.15/unitizer/tests/t-translate.R |only unitizer-1.4.15/unitizer/tests/t-translate.Rout.save |only unitizer-1.4.15/unitizer/tests/t-upgrade.R |only unitizer-1.4.15/unitizer/tests/t-upgrade.Rout.save |only unitizer-1.4.15/unitizer/tests/t-utz1.R |only unitizer-1.4.15/unitizer/tests/t-utz1.Rout.save |only unitizer-1.4.15/unitizer/tests/t-utz2.R |only unitizer-1.4.15/unitizer/tests/t-utz2.Rout.save |only unitizer-1.4.15/unitizer/tests/testthat/README |only unitizer-1.4.15/unitizer/tests/zz-check.R |only unitizer-1.4.15/unitizer/vignettes/u3_interactive-env.Rmd | 6 136 files changed, 795 insertions(+), 992 deletions(-)
Title: Processing various types of data on GEO and TCGA
Description: Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA)
provide us with a wealth of data, such as RNA-seq, DNA Methylation, SNP
and Copy number variation data. It's easy to download data from TCGA using the
gdc tool, but processing these data into a format suitable for bioinformatics
analysis requires more work. This R package was developed to handle these data.
Author: Erqiang Hu [aut, cre]
Maintainer: Erqiang Hu <13766876214@163.com>
Diff between GeoTcgaData versions 1.0.0.1 dated 2021-07-26 and 1.0.1 dated 2021-08-01
DESCRIPTION | 6 ++--- MD5 | 20 +++++++++--------- R/Merge_methylation.R | 14 +++++++++++- R/RNA_seq.R | 31 ++++++++++++++++++++++------ R/zzz.R | 9 +++++++- README.md | 8 +++---- inst/doc/GeoTcgaData.R | 33 ++++++++++++++++++++++++------ inst/doc/GeoTcgaData.Rmd | 38 ++++++++++++++++++++++++++-------- inst/doc/GeoTcgaData.html | 50 ++++++++++++++++++++++++++++++++++------------ man/diff_RNA.Rd | 31 ++++++++++++++++++++++------ vignettes/GeoTcgaData.Rmd | 38 ++++++++++++++++++++++++++-------- 11 files changed, 207 insertions(+), 71 deletions(-)
Title: Fast Wild Cluster Bootstrap Inference for Linear Regression
Models
Description: Implementation of the fast algorithm for wild cluster bootstrap
inference developed in Roodman et al (2019, STATA Journal) for
linear regression models
<https://journals.sagepub.com/doi/full/10.1177/1536867X19830877>,
which makes it feasible to quickly calculate bootstrap test
statistics based on a large number of bootstrap draws even for
large samples - as long as the number of bootstrapping clusters
is not too large. Multiway clustering, regression weights,
bootstrap weights, fixed effects and subcluster bootstrapping
are supported. Further, both restricted (WCR) and unrestricted
(WCU) bootstrap are supported. Methods are provided for a variety
of fitted models, including 'lm()', 'feols()'
(from package 'fixest') and 'felm()' (from package 'lfe').
Author: Alexander Fischer [aut, cre],
David Roodman [aut],
Achim Zeileis [ctb] (Author of included sandwich fragments),
Nathaniel Graham [ctb] (Contributor to included sandwich fragments),
Susanne Koell [ctb] (Contributor to included sandwich fragments),
Laurent Berge [ctb] (Author of included fixest fragments),
Sebastian Krantz [ctb]
Maintainer: Alexander Fischer <alexander-fischer1801@t-online.de>
Diff between fwildclusterboot versions 0.3.5 dated 2021-06-20 and 0.3.6 dated 2021-08-01
DESCRIPTION | 8 MD5 | 54 +++--- NEWS.md | 8 R/boottest_felm.R | 3 R/boottest_fixest.R | 2 README.md | 1 inst/doc/fwildclusterboot.R | 82 ++++------ inst/doc/fwildclusterboot.Rmd | 84 ++++------ inst/doc/fwildclusterboot.html | 202 +++++++++++-------------- inst/tinytest/test_bootcluster.R | 52 +++--- inst/tinytest/test_crosstab.R | 35 ++-- inst/tinytest/test_deterministic_alpha_beta0.R | 12 - inst/tinytest/test_deterministic_default.R | 52 +++--- inst/tinytest/test_deterministic_weights.R | 52 +++--- inst/tinytest/test_error_warning.R | 20 +- inst/tinytest/test_impose_null.R | 36 ++-- inst/tinytest/test_nthreads.R | 12 - inst/tinytest/test_p_val_type.R | 8 inst/tinytest/test_small_n_cluster.R | 2 inst/tinytest/test_stata.R | 4 inst/tinytest/test_tidy.R | 14 - inst/tinytest/test_tol_maxiter.R | 12 - inst/tinytest/test_type.R | 12 - man/boottest.felm.Rd | 3 man/boottest.fixest.Rd | 2 src/RcppExports.cpp | 5 tests/tinytest.R | 7 vignettes/fwildclusterboot.Rmd | 84 ++++------ 28 files changed, 424 insertions(+), 444 deletions(-)
More information about fwildclusterboot at CRAN
Permanent link
Title: Colour Vision Models
Description: Colour vision models, colour spaces and colour thresholds. Provides flexibility to build user-defined colour vision models for n number of photoreceptor types. Also includes Vorobyev & Osorio (1998) Receptor Noise Limited models <doi:10.1098/rspb.1998.0302>, Chittka (1992) colour hexagon <doi:10.1007/BF00199331>, and Endler & Mielke (2005) model <doi:10.1111/j.1095-8312.2005.00540.x>. Models have been extended to accept any number of photoreceptor types.
Author: Felipe M. Gawryszewski
Maintainer: Felipe Malheiros Gawrysewski <f.gawry@gmail.com>
Diff between colourvision versions 2.0.3 dated 2021-01-31 and 2.0.4 dated 2021-08-01
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 6 ++++++ R/colourvision_package.R | 6 +++--- build/partial.rdb |binary inst/doc/colourvision-vignette.html | 33 +++++++++++++++++++++++++-------- man/EMtetrahedron.Rd | 4 +--- 7 files changed, 45 insertions(+), 24 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-27 1.0.0
Title: A Wrapper of the JavaScript Library 'jsTree'
Description: Creates interactive trees that can be included in 'Shiny' apps and R markdown documents. A tree allows to represent hierarchical data (e.g. the contents of a directory). Similar to the 'shinyTree' package but offers more features and options, such as the grid extension, restricting the drag-and-drop behavior, and settings for the search functionality. It is possible to attach some data to the nodes of a tree and then to get these data in 'Shiny' when a node is selected. Also provides a 'Shiny' gadget allowing to manipulate one or more folders.
Author: Stéphane Laurent [aut, cre],
jQuery contributors [ctb, cph] (jQuery),
Ivan Bozhanov [ctb, cph] (jsTree),
Vedran Opacic [ctb, cph] (jsTree bootstrap theme),
Avi Deitcher [ctb, cph] (jsTreeGrid),
Philip Hutchison [ctb, cph] (PDFObject),
Terence Eden [ctb, cph] (SuperTinyIcons)
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between jsTreeR versions 1.2.0 dated 2021-01-16 and 1.3.0 dated 2021-08-01
jsTreeR-1.2.0/jsTreeR/inst/htmlwidgets/jstree.js |only jsTreeR-1.2.0/jsTreeR/inst/htmlwidgets/jstree.yaml |only jsTreeR-1.2.0/jsTreeR/inst/htmlwidgets/lib/bootstrap-theme/style.css |only jsTreeR-1.2.0/jsTreeR/inst/htmlwidgets/lib/jquery |only jsTreeR-1.2.0/jsTreeR/inst/htmlwidgets/lib/jstree/dist/themes/default-dark/style.css |only jsTreeR-1.2.0/jsTreeR/inst/htmlwidgets/lib/jstree/dist/themes/default/style.css |only jsTreeR-1.3.0/jsTreeR/DESCRIPTION | 8 jsTreeR-1.3.0/jsTreeR/MD5 | 51 jsTreeR-1.3.0/jsTreeR/NAMESPACE | 6 jsTreeR-1.3.0/jsTreeR/NEWS.md | 80 jsTreeR-1.3.0/jsTreeR/R/folderGadget.R | 1548 +++++----- jsTreeR-1.3.0/jsTreeR/R/internal.R |only jsTreeR-1.3.0/jsTreeR/R/jstree-shiny.R |only jsTreeR-1.3.0/jsTreeR/R/jstree.R | 1339 ++------ jsTreeR-1.3.0/jsTreeR/R/jstreeExamples.R |only jsTreeR-1.3.0/jsTreeR/inst/examples |only jsTreeR-1.3.0/jsTreeR/inst/htmlwidgets/jstreer.js |only jsTreeR-1.3.0/jsTreeR/inst/htmlwidgets/jstreer.yaml |only jsTreeR-1.3.0/jsTreeR/inst/htmlwidgets/lib/jstree/dist/jstree.min.js | 12 jsTreeR-1.3.0/jsTreeR/man/folderGadget.Rd | 3 jsTreeR-1.3.0/jsTreeR/man/jsTreeR-imports.Rd | 2 jsTreeR-1.3.0/jsTreeR/man/jstree-shiny.Rd | 543 --- jsTreeR-1.3.0/jsTreeR/man/jstree.Rd | 22 jsTreeR-1.3.0/jsTreeR/man/jstreeExample.Rd |only jsTreeR-1.3.0/jsTreeR/man/jstreeExamples.Rd |only 25 files changed, 1302 insertions(+), 2312 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-19 1.7.3-1
2018-06-30 1.7.2-4
2018-06-18 1.7.2-3
2017-12-07 1.7.2-1
2016-12-11 1.7.2-0
2015-06-07 1.6.0-2
2015-04-11 1.5.0-1
2014-11-18 1.3-3
2014-10-22 1.3-2
2014-10-21 1.3-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-19 0.6.0
2019-07-09 0.5.3
2017-10-30 0.5.2
2016-12-29 0.5.0
2016-08-03 0.4.1
2016-02-06 0.4.0
2015-12-21 0.3.0
2015-11-17 0.2.1
2015-11-11 0.2.0
2015-07-17 0.1.1
2015-07-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-10 1.2.2
2020-03-05 1.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-21 0.5.3
Title: A Minimal Tool Set for Gathering USDA Quick Stat Data for
Analysis and Visualization
Description: Provides a consistent API to pull United States Department of
Agriculture census and survey data from the National Agricultural
Statistics Service (NASS) QuickStats service.
Author: Brad Lindblad [aut, cre],
Michael Thomas [ctb],
Alex Mindeman [ctb]
Maintainer: Brad Lindblad <me@bradlindblad.com>
Diff between tidyUSDA versions 0.3.1 dated 2021-03-12 and 0.3.2 dated 2021-08-01
DESCRIPTION | 20 - LICENSE | 4 MD5 | 16 NEWS.md | 7 R/getQuickstat.R | 115 +++++- README.md | 3 build/vignette.rds |binary inst/doc/using_tidyusda.html | 722 ++++++++++++++++++++++++------------------- man/tidyUSDA.Rd | 2 9 files changed, 526 insertions(+), 363 deletions(-)