Title: Simulate Spatial Bernoulli Networks
Description: Social network analysis is becoming commonplace in many social
science disciplines, but access to useful network data, especially
among marginalized populations, still remains a formidable challenge.
This package mitigates that problem by providing tools to simulate spatial
Bernoulli networks as proposed in Carter T. Butts
(2002, ISBN:978-0-493-72676-2), "Spatial models of large-scale interpersonal networks. Using this package, network analysts can simulate a spatial point
process or sequence with a given number of nodes inside a geographical
boundary and estimate the probability of a tie formation between all node
pairs. When simulating a network, an analyst can choose between five spatial
interaction functions. The package also enables quick comparison of summary statistics for simulated networks and provides simple to use plotting
methods for its classes that return plots which can be further refined with
the 'ggplot2' package.
Author: Darren Colby [aut, cre] (<https://orcid.org/0000-0001-8468-2755>)
Maintainer: Darren Colby <dscolby17@gmail.com>
Diff between spacejamr versions 0.1 dated 2021-09-09 and 0.1.1 dated 2021-09-12
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 11 ++++++++--- R/NetSim.R | 4 ++-- README.md | 2 +- tests/testthat/test-spacejamr.R | 2 ++ 6 files changed, 21 insertions(+), 14 deletions(-)
Title: Convert R Graphics to Flash Animations
Description: Using the 'Ming' library
<http://www.libming.org/> to create Flash animations.
Users can either use the 'SWF' device swf() to generate 'SWF' file
directly through plotting functions like plot() and lines(),
or convert images of other formats ('SVG', 'PNG', 'JPEG') into 'SWF'.
Author: Yixuan Qiu, Yihui Xie, Cameron Bracken and authors of included
software. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between R2SWF versions 0.9-5 dated 2021-01-12 and 0.9-6 dated 2021-09-12
DESCRIPTION | 8 +- MD5 | 102 +++++++++++++------------- NAMESPACE | 2 R/svg2swf.R | 6 - R/swfDevice.R | 4 - R/xx2swf.R | 3 R/zzz.R | 6 - configure | 72 ++++++++++++++++++ configure.ac | 18 ++++ inst/NEWS.Rd | 10 ++ man/svg2swf.Rd | 3 src/R2SWF-win.def | 1 src/image2swf.c | 8 +- src/init.c | 8 +- src/libming/actioncompiler/compile.c | 46 +++++------ src/libming/actioncompiler/compile.h | 8 +- src/libming/actioncompiler/lex.swf4.c | 40 +++++----- src/libming/actioncompiler/lex.swf5.c | 42 +++++----- src/libming/actioncompiler/listaction.c | 18 ++-- src/libming/actioncompiler/swf4compiler.tab.c | 2 src/libming/actioncompiler/swf5compiler.tab.c | 10 +- src/libming/blocks/bitmap.c | 2 src/libming/blocks/browserfont.c | 2 src/libming/blocks/button.c | 2 src/libming/blocks/dbl.c | 2 src/libming/blocks/fdbfont.c | 42 +++++----- src/libming/blocks/fileattrs.c | 2 src/libming/blocks/flv.c | 14 +-- src/libming/blocks/font.c | 10 +- src/libming/blocks/fromswf.c | 94 +++++++++++------------ src/libming/blocks/gradient.c | 8 +- src/libming/blocks/imports.c | 4 - src/libming/blocks/input.c | 36 ++++----- src/libming/blocks/morph.c | 5 - src/libming/blocks/mp3.c | 4 - src/libming/blocks/output.c | 10 +- src/libming/blocks/outputblock.c | 4 - src/libming/blocks/pngdbl.c | 20 ++--- src/libming/blocks/shape.c | 26 +++--- src/libming/blocks/sound.c | 2 src/libming/blocks/soundstream.c | 4 - src/libming/blocks/text.c | 18 ++-- src/libming/blocks/textfield.c | 22 ++--- src/libming/blocks/ttffont.c | 8 +- src/libming/blocks/utf8.c | 8 +- src/libming/blocks/videostream.c | 4 - src/libming/ming.h | 10 +- src/libming/movie.c | 8 +- src/libming/shape_util.c | 6 - src/rsvg-path.c | 5 - src/svg2swf.c | 8 +- src/swfDevice.c | 12 +-- 52 files changed, 459 insertions(+), 360 deletions(-)
Title: Calculation of Slope-Dependant Accumulated Cost Surface,
Least-Cost Paths, Least-Cost Corridors, Least-Cost Networks
Related to Human Movement Across the Landscape
Description: Provides the facility to calculate non-isotropic accumulated cost surface, least-cost paths, least-cost corridors, least-cost networks using a number of human-movement-related cost functions that can be selected by the user. It just requires a Digital Terrain Model, a start location and (optionally) destination locations. See Alberti (2019) <doi:10.1016/j.softx.2019.100331>.
Author: Gianmarco Alberti [aut, cre]
Maintainer: Gianmarco Alberti <gianmarcoalberti@gmail.com>
Diff between movecost versions 1.3 dated 2021-08-05 and 1.4 dated 2021-09-12
DESCRIPTION | 17 ++- MD5 | 28 +++--- NAMESPACE | 10 ++ NEWS.md | 11 +- R/movealloc.R | 60 ++++++++++++- R/movebound.R | 178 ++++++++++++++++++++++++++++++++++------ R/movecomp.R |only R/movecorr.R | 69 +++++++++++++-- R/movecost.R | 242 +++++++++++++++++++++++++++++++++++++++++++------------ R/movenetw.R |only README.md | 9 +- man/movealloc.Rd | 24 ++++- man/movebound.Rd | 78 +++++++++++++---- man/movecomp.Rd |only man/movecorr.Rd | 28 ++++-- man/movecost.Rd | 142 +++++++++++++++++++++++--------- man/movenetw.Rd |only 17 files changed, 708 insertions(+), 188 deletions(-)
Title: Extended Agglomerative Hierarchical Clustering
Description: A comprehensive collection of linkage methods for agglomerative
hierarchical clustering on a matrix of proximity data (distances or
similarities), returning a multifurcated dendrogram or multidendrogram.
Multidendrograms can group more than two clusters when ties in proximity data
occur, and therefore they do not depend on the order of the input data.
Descriptive measures to analyze the resulting dendrogram are additionally
provided.
Author: Alberto Fern<e1>ndez [aut, cre] (<https://orcid.org/0000-0002-1241-1646>),
Sergio G<f3>mez [aut] (<https://orcid.org/0000-0003-1820-0062>)
Maintainer: Alberto Fern<e1>ndez <alberto.fernandez@urv.cat>
Diff between mdendro versions 2.0 dated 2021-05-28 and 2.1.0 dated 2021-09-12
DESCRIPTION | 18 ++++++------- MD5 | 30 +++++++++++------------ R/linkage.R | 42 +++++++++++++++++--------------- build/vignette.rds |binary inst/doc/mdendro-vignette.R | 3 ++ inst/doc/mdendro-vignette.Rmd | 16 +++++++++--- inst/doc/mdendro-vignette.html | 31 +++++++++++++++++------ man/linkage.Rd | 17 ++++++++----- src/Matrix.cpp | 53 +++++++++++++++++------------------------ src/Matrix.h | 12 +++------ src/RcppExports.cpp | 5 +++ src/RcppLinkage.cpp | 13 +++++----- src/Sahn.cpp | 4 +-- src/Ultrametricity.cpp | 24 ++++++++---------- src/Ultrametricity.h | 7 ++--- vignettes/mdendro-vignette.Rmd | 16 +++++++++--- 16 files changed, 163 insertions(+), 128 deletions(-)
Title: Cumulative Percent Decay Curve Generator
Description: Calculates and visualises cumulative percent 'decay' curves,
which are typically calculated from metagenomic taxonomic profiles.
These can be used to estimate the level of expected 'endogenous' taxa
at different abundance levels retrieved from metagenomic samples, when
comparing to samples of known sampling site or source. Method
described in Fellows Yates, J. A. et. al. (2021) Proceedings of the
National Academy of Sciences USA <doi:10.1073/pnas.2021655118>.
Author: James A. Fellows Yates [aut, cre]
(<https://orcid.org/0000-0001-5585-6277>)
Maintainer: James A. Fellows Yates <jfy133@gmail.com>
Diff between cuperdec versions 1.0.0 dated 2021-04-07 and 1.1.0 dated 2021-09-12
DESCRIPTION | 14 - MD5 | 28 +-- NEWS.md | 16 + R/calculations.R | 4 R/plotting.R | 39 ++-- R/validators.R | 8 README.md | 16 + build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 71 ++++++- inst/doc/cuperdec-intro.R | 56 +++++- inst/doc/cuperdec-intro.Rmd | 134 +++++++++++---- inst/doc/cuperdec-intro.html | 384 +++++++++++-------------------------------- man/plot_cuperdec.Rd | 20 +- vignettes/cuperdec-intro.Rmd | 134 +++++++++++---- 15 files changed, 521 insertions(+), 403 deletions(-)
Title: Bayesian Quantile Regression for Ordinal Models
Description: Provides an estimation technique for Bayesian quantile
regression in ordinal models. Two algorithms are considered - one
for an ordinal model with three outcomes and the other for an ordinal
model with more than 3 outcomes. It further provides model performance
criteria and trace plots for Markov chain Monte Carlo (MCMC) draws.
Rahman, M. A. (2016) <doi:10.1214/15-BA939>.
Greenberg, E. (2012) <doi:10.1017/CBO9781139058414>.
Spiegelhalter, D. J., Best, N. G., Carlin B. P. and Linde A. (2002) <doi:10.1111/1467-9868.00353>.
Author: Prof. Mohammad Arshad Rahman Developer [aut],
Prajual Maheshwari [cre]
Maintainer: Prajual Maheshwari <prajual1391@gmail.com>
Diff between bqror versions 0.1.6 dated 2021-07-23 and 1.1.0 dated 2021-09-12
bqror-0.1.6/bqror/man/alcdfstdg3.Rd |only bqror-0.1.6/bqror/man/covariate_effect.Rd |only bqror-0.1.6/bqror/man/deviance3.Rd |only bqror-0.1.6/bqror/man/devianceg3.Rd |only bqror-0.1.6/bqror/man/drawbeta3.Rd |only bqror-0.1.6/bqror/man/drawbetag3.Rd |only bqror-0.1.6/bqror/man/drawdeltag3.Rd |only bqror-0.1.6/bqror/man/drawlatent3.Rd |only bqror-0.1.6/bqror/man/drawlatentg3.Rd |only bqror-0.1.6/bqror/man/drawnu3.Rd |only bqror-0.1.6/bqror/man/drawsigma3.Rd |only bqror-0.1.6/bqror/man/drawwg3.Rd |only bqror-0.1.6/bqror/man/inefficiency_factor3.Rd |only bqror-0.1.6/bqror/man/inefficiency_factorg3.Rd |only bqror-0.1.6/bqror/man/quan_reg3.Rd |only bqror-0.1.6/bqror/man/quan_regg3.Rd |only bqror-0.1.6/bqror/man/trace_plot3.Rd |only bqror-0.1.6/bqror/man/trace_plotg3.Rd |only bqror-1.1.0/bqror/DESCRIPTION | 14 bqror-1.1.0/bqror/MD5 | 92 - bqror-1.1.0/bqror/NAMESPACE | 46 bqror-1.1.0/bqror/R/Covariate_effect.R | 102 - bqror-1.1.0/bqror/R/ODRI.R | 1197 ++++++++++++-------- bqror-1.1.0/bqror/R/ODRII.R | 962 ++++++++++------ bqror-1.1.0/bqror/R/bqror.R | 30 bqror-1.1.0/bqror/R/data.R | 86 - bqror-1.1.0/bqror/data/Educational_Attainment.RData |binary bqror-1.1.0/bqror/data/data25j3.RData |binary bqror-1.1.0/bqror/data/data25j4.RData |binary bqror-1.1.0/bqror/data/data50j3.RData |binary bqror-1.1.0/bqror/data/data50j4.RData |binary bqror-1.1.0/bqror/data/data75j3.RData |binary bqror-1.1.0/bqror/data/data75j4.RData |binary bqror-1.1.0/bqror/man/Educational_Attainment.Rd | 20 bqror-1.1.0/bqror/man/alcdf.Rd | 6 bqror-1.1.0/bqror/man/alcdfstd.Rd |only bqror-1.1.0/bqror/man/bqror.Rd | 30 bqror-1.1.0/bqror/man/covariateEffect_or1.Rd |only bqror-1.1.0/bqror/man/data25j3.Rd | 13 bqror-1.1.0/bqror/man/data25j4.Rd | 13 bqror-1.1.0/bqror/man/data50j3.Rd | 13 bqror-1.1.0/bqror/man/data50j4.Rd | 13 bqror-1.1.0/bqror/man/data75j3.Rd | 13 bqror-1.1.0/bqror/man/data75j4.Rd | 13 bqror-1.1.0/bqror/man/deviance_or1.Rd |only bqror-1.1.0/bqror/man/deviance_or2.Rd |only bqror-1.1.0/bqror/man/drawbeta_or1.Rd |only bqror-1.1.0/bqror/man/drawbeta_or2.Rd |only bqror-1.1.0/bqror/man/drawdelta_or1.Rd |only bqror-1.1.0/bqror/man/drawlatent_or1.Rd |only bqror-1.1.0/bqror/man/drawlatent_or2.Rd |only bqror-1.1.0/bqror/man/drawnu_or2.Rd |only bqror-1.1.0/bqror/man/drawsigma_or2.Rd |only bqror-1.1.0/bqror/man/draww_or1.Rd |only bqror-1.1.0/bqror/man/infactor_or1.Rd |only bqror-1.1.0/bqror/man/infactor_or2.Rd |only bqror-1.1.0/bqror/man/logmargLikelihood_or1.Rd |only bqror-1.1.0/bqror/man/logmargLikelihood_or2.Rd |only bqror-1.1.0/bqror/man/negLoglikelihood.Rd | 20 bqror-1.1.0/bqror/man/qrminfundtheorem.Rd | 73 - bqror-1.1.0/bqror/man/qrnegloglikensum.Rd | 45 bqror-1.1.0/bqror/man/quantreg_or1.Rd |only bqror-1.1.0/bqror/man/quantreg_or2.Rd |only bqror-1.1.0/bqror/man/rndald.Rd | 4 bqror-1.1.0/bqror/man/traceplot_or1.Rd |only bqror-1.1.0/bqror/man/traceplot_or2.Rd |only 66 files changed, 1684 insertions(+), 1121 deletions(-)
Title: Data Manipulation Functions Implemented in C
Description: Basic functions, implemented in C, for large data manipulation. Fast vectorised ifelse()/nested if()/switch() functions, psum()/pprod() functions equivalent to pmin()/pmax() plus others which are missing from base R. Most of these functions are callable at C level.
Author: Morgan Jacob [aut, cre, cph]
Maintainer: Morgan Jacob <morgan.emailbox@gmail.com>
Diff between kit versions 0.0.8 dated 2021-08-17 and 0.0.9 dated 2021-09-12
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/call.R | 2 +- inst/NEWS.Rd | 8 ++++++++ src/kit.h | 23 ++++++++++++----------- tests/test_kit.Rout.save | 2 +- 6 files changed, 31 insertions(+), 22 deletions(-)
Title: Access USPTO Bulk Data in Tidy Rectangular Format
Description: Converts TXT and XML data curated by the United States Patent and
Trademark Office (USPTO). Allows conversion of bulk data after downloading
directly from the USPTO bulk data website, eliminating need for users to
wrangle multiple data formats to get large patent databases in tidy,
rectangular format. Data details can be found on the USPTO website
<https://bulkdata.uspto.gov/>. Currently, all 3 formats: 1. TXT data
(1976-2001); 2. XML format 1 data (2002-2004); and 3. XML format 2 data
(2005-current) can be converted to rectangular, CSV format.
Relevant literature that uses data from USPTO includes Wada (2020)
<doi:10.1007/s11192-020-03674-4> and Plaza & Albert (2008)
<doi:10.1007/s11192-007-1763-3>.
Author: Raoul Wadhwa [aut, cre] (<https://orcid.org/0000-0003-0503-9580>),
James Yu [aut],
Hayley Beltz [aut],
Milind Desai [aut],
Jacob Scott [aut],
Peter Erdi [aut]
Maintainer: Raoul Wadhwa <raoulwadhwa@gmail.com>
Diff between patentr versions 0.1.2 dated 2021-07-17 and 0.1.4 dated 2021-09-12
DESCRIPTION | 6 +++--- MD5 | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Title: "Eating the Liver of Data Science"
Description: Provides a collection of helper functions that make various techniques from data science more user-friendly for non-experts. In this way, our aim is to allow non-experts to become familiar with the techniques with only a minimal level of coding knowledge. Indeed, following an ancient Persian idiom, we refer to this as "eating the liver of data science" which could be interpreted as "getting intimately close with data science". Examples of procedures we include are: data partitioning for out-of-sample testing, computing Mean Squared Error (MSE) for quantifying prediction accuracy, and data transformation (z-score and min-max). Besides such helper functions, the package also includes several interesting datasets that are useful for multivariate analysis.
Author: Reza Mohammadi [aut, cre] (<https://orcid.org/0000-0001-9538-0648>),
Kevin Burke [aut]
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between liver versions 1.8 dated 2021-08-16 and 1.9 dated 2021-09-12
DESCRIPTION | 6 +++--- MD5 | 18 ++++++++++-------- NAMESPACE | 11 ----------- NEWS.md | 4 ++++ R/mae.R | 2 +- R/mse.R | 2 +- R/skewness.R | 4 ++-- R/zscore.R | 2 +- data/corona.RData |only data/datalist | 1 + man/corona.Rd |only 11 files changed, 23 insertions(+), 27 deletions(-)
Title: Retrieving, Managing and Analysing Air Quality and Weather Data
for Lombardy (Italy) using ARPA Lombardia Open Database
Description: Contains functions for retrieving, managing and analysing air quality and weather data from Regione Lombardia open database (<https://www.dati.lombardia.it/>).
Data are collected by ARPA Lombardia (Lombardia Environmental Protection Agency), Italy, through its ground monitoring network.
See the webpage <https://www.arpalombardia.it/Pages/ARPA_Home_Page.aspx> for further information on ARPA Lombardia's activities and history.
Data quality (e.g. missing values, exported values, graphical mapping) has been checked involving members of the ARPA Lombardia's office for air quality control.
The package makes available observations since 1989 (for weather) and 1996 (for air quality) and are updated with daily frequency by the regional agency.
Author: Paolo Maranzano [aut, cre, cph]
(<https://orcid.org/0000-0002-9228-2759>),
Andrea Algieri [aut, cph]
Maintainer: Paolo Maranzano <pmaranzano.ricercastatistica@gmail.com>
Diff between ARPALData versions 1.0.2 dated 2021-08-20 and 1.2.0 dated 2021-09-12
DESCRIPTION | 24 +++++++++++++++----- MD5 | 22 +++++++++++------- NAMESPACE | 3 +- R/W_metadata_reshape.R | 2 - R/get_ARPA_Lombardia_AQ_data.R | 3 +- R/get_ARPA_Lombardia_AQ_data_1y.R | 31 ++++++++++++++++++++++++-- R/get_ARPA_Lombardia_AQ_municipal_data_1y.R | 9 +++++++ R/get_ARPA_Lombardia_W_data_1y.R | 33 ++++++++++++++++++++++++++-- R/k_min_vals_vec.R |only R/k_min_vals_vec_idx.R |only R/quantilep.R | 22 ------------------ R/registry_KNN_dist.R |only R/url_dataset_year.R | 12 ++++++++-- man/registry_KNN_dist.Rd |only 14 files changed, 115 insertions(+), 46 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-23 0.6.9
2021-08-09 0.6.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-19 1.0.9
Title: Easily Process a Batch of Cox Models
Description: A tool to operate a batch of univariate or multivariate Cox
models and return tidy result.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>)
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between ezcox versions 0.8.1 dated 2021-03-16 and 1.0.0 dated 2021-09-12
ezcox-0.8.1/ezcox/inst/CITATION |only ezcox-0.8.1/ezcox/inst/test.R |only ezcox-0.8.1/ezcox/tests/testthat/test-test_ezcox.R |only ezcox-1.0.0/ezcox/DESCRIPTION | 23 - ezcox-1.0.0/ezcox/MD5 | 84 ++- ezcox-1.0.0/ezcox/NAMESPACE | 1 ezcox-1.0.0/ezcox/NEWS.md | 20 ezcox-1.0.0/ezcox/R/clean_model_dir.R | 6 ezcox-1.0.0/ezcox/R/cox_panel.R | 14 ezcox-1.0.0/ezcox/R/ezcox.R | 17 ezcox-1.0.0/ezcox/R/ezcox_parallel.R | 8 ezcox-1.0.0/ezcox/R/ezgrp.R | 57 +- ezcox-1.0.0/ezcox/R/filter_ezcox.R | 5 ezcox-1.0.0/ezcox/R/forester.R |only ezcox-1.0.0/ezcox/R/get_models.R | 2 ezcox-1.0.0/ezcox/R/show_forest.R | 13 ezcox-1.0.0/ezcox/R/show_models.R | 8 ezcox-1.0.0/ezcox/R/zzz.R | 4 ezcox-1.0.0/ezcox/README.md | 29 - ezcox-1.0.0/ezcox/build/vignette.rds |binary ezcox-1.0.0/ezcox/inst/doc/ezcox.R | 2 ezcox-1.0.0/ezcox/inst/doc/ezcox.Rmd | 16 ezcox-1.0.0/ezcox/inst/doc/ezcox.html | 230 +++++----- ezcox-1.0.0/ezcox/inst/doc/ezforest.R | 13 ezcox-1.0.0/ezcox/inst/doc/ezforest.Rmd | 35 + ezcox-1.0.0/ezcox/inst/doc/ezforest.html | 197 +++++--- ezcox-1.0.0/ezcox/inst/doc/ezgroup.Rmd | 11 ezcox-1.0.0/ezcox/inst/doc/ezgroup.html | 125 ++--- ezcox-1.0.0/ezcox/man/clean_model_dir.Rd | 4 ezcox-1.0.0/ezcox/man/ezcox.Rd | 12 ezcox-1.0.0/ezcox/man/ezcox_group.Rd | 5 ezcox-1.0.0/ezcox/man/ezcox_parallel.Rd | 4 ezcox-1.0.0/ezcox/man/figures/README-unnamed-chunk-2-1.png |binary ezcox-1.0.0/ezcox/man/filter_ezcox.Rd | 3 ezcox-1.0.0/ezcox/man/forester.Rd |only ezcox-1.0.0/ezcox/man/pipe.Rd | 24 - ezcox-1.0.0/ezcox/man/show_forest.Rd | 3 ezcox-1.0.0/ezcox/man/show_models.Rd | 3 ezcox-1.0.0/ezcox/tests/testthat/test-roxytest-testexamples-clean_model_dir.R |only ezcox-1.0.0/ezcox/tests/testthat/test-roxytest-testexamples-ezcox.R |only ezcox-1.0.0/ezcox/tests/testthat/test-roxytest-testexamples-ezcox_parallel.R |only ezcox-1.0.0/ezcox/tests/testthat/test-roxytest-testexamples-ezgrp.R |only ezcox-1.0.0/ezcox/tests/testthat/test-roxytest-testexamples-filter_ezcox.R |only ezcox-1.0.0/ezcox/tests/testthat/test-roxytest-testexamples-forester.R |only ezcox-1.0.0/ezcox/tests/testthat/test-roxytest-testexamples-get_models.R |only ezcox-1.0.0/ezcox/tests/testthat/test-roxytest-testexamples-show_forest.R |only ezcox-1.0.0/ezcox/tests/testthat/test-roxytest-testexamples-show_models.R |only ezcox-1.0.0/ezcox/vignettes/ezcox.Rmd | 16 ezcox-1.0.0/ezcox/vignettes/ezforest.Rmd | 35 + ezcox-1.0.0/ezcox/vignettes/ezgroup.Rmd | 11 50 files changed, 639 insertions(+), 401 deletions(-)
Title: Tools for Identifying Important Nodes in Networks
Description: Includes assorted tools for network analysis. Bridge centrality; goldbricker; MDS, PCA, & eigenmodel network plotting.
Author: Payton Jones [aut, cre]
Maintainer: Payton Jones <paytonjjones@gmail.com>
Diff between networktools versions 1.2.3 dated 2020-04-20 and 1.3.0 dated 2021-09-12
DESCRIPTION | 16 MD5 | 82 +-- NAMESPACE | 102 +-- NEWS.md | 94 +-- R/EIGENnet.R | 94 +-- R/MDSnet.R | 270 +++++----- R/PCAnet.R | 112 ++-- R/assumptionCheck.R | 246 ++++----- R/bridge.R | 615 ++++++++++++----------- R/data_documentation.R | 72 +- R/expectedInf.R | 136 ++--- R/goldbricker.R | 218 ++++---- R/hidden_functions.R | 404 +++++++-------- R/impact.R | 416 ++++++++-------- R/impact_NCT.R | 244 ++++----- R/impact_boot.R | 254 ++++----- R/imports.R | 26 - R/net_reduce.R | 182 +++---- R/networktools-package.r | 38 - R/summary_print_plot.R | 1106 +++++++++++++++++++++---------------------- man/EIGENnet.Rd | 90 +-- man/MDSnet.Rd | 87 +-- man/PCAnet.Rd | 81 +-- man/PROCRUSTESnet.Rd | 126 ++-- man/assumptionCheck.Rd | 108 ++-- man/bridge.Rd | 198 +++---- man/coerce_to_adjacency.Rd | 34 - man/depression.Rd | 40 - man/expectedInf.Rd | 112 ++-- man/goldbricker.Rd | 138 ++--- man/impact.NCT.Rd | 140 ++--- man/impact.Rd | 137 ++--- man/impact.boot.Rd | 109 ++-- man/net_reduce.Rd | 94 +-- man/networktools.Rd | 45 - man/plot.all.impact.Rd | 65 +- man/plot.bridge.Rd | 97 ++- man/plot.edge.impact.Rd | 83 +-- man/plot.expectedInf.Rd | 69 +- man/plot.global.impact.Rd | 63 +- man/plot.structure.impact.Rd | 63 +- man/social.Rd | 40 - 42 files changed, 3427 insertions(+), 3319 deletions(-)