Title: Stock Assessment Methods Toolkit
Description: Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries.
'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting,
model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
Author: Quang Huynh [aut, cre],
Tom Carruthers [aut],
Adrian Hordyk [aut]
Maintainer: Quang Huynh <quang@bluematterscience.com>
Diff between SAMtool versions 1.2.1 dated 2021-08-12 and 1.2.2 dated 2021-09-16
DESCRIPTION | 8 MD5 | 34 ++- NAMESPACE | 1 NEWS.md | 8 R/HCRs.R | 14 + R/Misc_fun.R | 2 R/assess_shortcut.R | 10 - R/define_S4_class_RCModel.R | 12 + R/define_S4_class_assess_RCMdata.R | 14 + R/diagnostic.R | 62 ++++--- R/interim_MP.R |only R/z_MPs.R | 78 +++------ build/partial.rdb |only build/vignette.rds |binary inst/doc/SAMtool.html | 315 +++++++++++++++++++++++++++++-------- inst/include/ns/ns_SP.hpp | 8 man/Model-based-MP.Rd | 29 +-- man/Shortcut.Rd | 6 man/make_MP.Rd | 79 ++++++++- 19 files changed, 491 insertions(+), 189 deletions(-)
Title: Stepwise Elimination and Term Reordering for Mixed-Effects
Regression
Description: Finds the largest possible regression model that will still converge
for various types of regression analyses (including mixed models and generalized
additive models) and then optionally performs stepwise elimination similar to the
forward and backward effect-selection methods in SAS, based on the change in
log-likelihood or its significance, Akaike's Information Criterion, the Bayesian
Information Criterion, the explained deviance, or the F-test of the change in R².
Author: Cesko C. Voeten [aut, cre] (<https://orcid.org/0000-0003-4687-9973>)
Maintainer: Cesko C. Voeten <cvoeten@gmail.com>
Diff between buildmer versions 2.0 dated 2021-08-19 and 2.1 dated 2021-09-16
ChangeLog | 21 DESCRIPTION | 8 MD5 | 37 - NAMESPACE | 1 R/buildmer-S4.R | 6 R/buildmer.R | 20 R/control.R | 20 R/elim.R | 24 R/fitters.R | 2 R/utility.R | 9 build/vignette.rds |binary inst/doc/buildmer.R | 432 ++++++++--------- inst/doc/buildmer.html | 1132 ++++++++++++++++++++++----------------------- man/LRTalpha.Rd |only man/buildbam.Rd | 2 man/buildgam.Rd | 2 man/buildmer-class.Rd | 4 man/buildmerControl.Rd | 2 man/buildmertree.Rd | 4 man/diag-formula-method.Rd | 2 20 files changed, 887 insertions(+), 841 deletions(-)
Title: ODBC Database Access
Description: An ODBC database interface.
Author: Brian Ripley [aut, cre],
Michael Lapsley [aut] (1999 to Oct 2002)
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between RODBC versions 1.3-18 dated 2021-08-30 and 1.3-19 dated 2021-09-16
ChangeLog | 4 DESCRIPTION | 10 MD5 | 12 configure | 2658 +++++++++++++++++++++++++++-------------------------- configure.ac | 11 inst/doc/RODBC.pdf |binary src/config.h.in | 10 7 files changed, 1401 insertions(+), 1304 deletions(-)
Title: Serialize R Objects to JSON, JavaScript Object Notation
Description: This is a package that allows conversion to and from
data in Javascript object notation (JSON) format.
This allows R objects to be inserted into Javascript/ECMAScript/ActionScript code
and allows R programmers to read and convert JSON content to R objects.
This is an alternative to rjson package. Originally, that was too slow for converting large R objects to JSON
and was not extensible. rjson's performance is now similar to this package, and perhaps slightly faster in some cases.
This package uses methods and is readily extensible by defining methods for different classes,
vectorized operations, and C code and callbacks to R functions for deserializing JSON objects to R.
The two packages intentionally share the same basic interface. This package (RJSONIO) has many additional
options to allow customizing the generation and processing of JSON content.
This package uses libjson rather than implementing yet another JSON parser. The aim is to support
other general projects by building on their work, providing feedback and benefit from their ongoing development.
Author: CRAN Team [ctb, cre] (de facto maintainer since 2014),
Duncan Temple Lang [aut] (<https://orcid.org/0000-0003-0159-1546>),
Jonathan Wallace [aut] (aka ninja9578, author of included libjson
sources)
Maintainer: CRAN Team <CRAN@r-project.org>
Diff between RJSONIO versions 1.3-1.5 dated 2021-08-17 and 1.3-1.6 dated 2021-09-16
DESCRIPTION | 6 MD5 | 10 configure | 1753 ++++++++++++++++++++++++++++++++----------------- configure.ac | 21 inst/doc/Changes.html | 4 inst/doc/overview.html | 32 6 files changed, 1196 insertions(+), 630 deletions(-)
Title: Recurrent Event Regression
Description: A comprehensive collection of practical and easy-to-use tools for regression analysis of recurrent events, with or without the presence of a (possibly) informative terminal event. The modeling framework is based on a joint frailty scale-change model, that includes models described in Wang et al. (2001) <doi:10.1198/016214501753209031>, Huang and Wang (2004) <doi:10.1198/016214504000001033>, Xu et al. (2017) <doi:10.1080/01621459.2016.1173557>, and Xu et al. (2019) <doi:10.5705/SS.202018.0224> as special cases. The implemented estimating procedure does not require any parametric assumption on the frailty distribution. The package also allows the users to specify different model forms for both the recurrent event process and the terminal event.
Author: Sy Han (Steven) Chiou [aut, cre],
Chiung-Yu Huang [aut]
Maintainer: Sy Han (Steven) Chiou <schiou@utdallas.edu>
Diff between reReg versions 1.4.0 dated 2021-04-14 and 1.4.1 dated 2021-09-16
DESCRIPTION | 10 - MD5 | 40 +++--- NAMESPACE | 9 + NEWS.md | 6 R/RcppExports.R | 5 R/mcf.R | 2 R/npFit.R | 1 R/plot.R | 92 ++++++++------- R/reReg.R | 281 ++++++++++++++++++++++++++++++++++------------ R/reReg_pkg.R | 4 R/regGeneral.R | 67 +++++++--- R/simu.R | 14 +- R/summary.R | 137 ++++++++++++++++------ R/util.R | 42 ++++++ man/mcf.Rd | 2 man/plotEvents.control.Rd |only man/reReg-package.Rd | 4 man/reReg.Rd | 26 ++-- man/reReg.control.Rd |only src/RcppExports.cpp | 23 +++ src/init.c | 2 src/regRec.cpp | 36 +++++ 22 files changed, 588 insertions(+), 215 deletions(-)
More information about frequentistSSD at CRAN
Permanent link
Title: Weibull Analysis for Reliability Engineering
Description: Life data analysis in the graphical tradition of Waloddi Weibull. Methods derived from Robert B. Abernethy (2008, ISBN 0-965306-3-2), Wayne Nelson (1982, ISBN: 9780471094586) <DOI:10.1002/0471725234>, William Q. Meeker and Lois A. Escobar (1998, ISBN: 1-471-14328-6), John I. McCool, (2012, ISBN: 9781118217986) <DOI:10.1002/9781118351994>.
Author: David Silkworth [aut],
Jurgen Symynck [aut],
Jacob Ormerod [cre],
OpenReliability.org [cph]
Maintainer: Jacob Ormerod <jake@openreliability.org>
Diff between WeibullR versions 1.0.12 dated 2019-11-25 and 1.1 dated 2021-09-16
WeibullR-1.0.12/WeibullR/R/pivotal3pw.r |only WeibullR-1.0.12/WeibullR/man/pivotal3pw.Rd |only WeibullR-1.1/WeibullR/DESCRIPTION | 8 WeibullR-1.1/WeibullR/MD5 | 84 WeibullR-1.1/WeibullR/NAMESPACE | 5 WeibullR-1.1/WeibullR/R/FMbounds.r | 194 +- WeibullR-1.1/WeibullR/R/LRbounds.r | 568 ++++- WeibullR-1.1/WeibullR/R/MLEcontour.r | 6 WeibullR-1.1/WeibullR/R/MLEln3p.r | 18 WeibullR-1.1/WeibullR/R/MLEw3p.r | 18 WeibullR-1.1/WeibullR/R/MRRln3p.r | 18 WeibullR-1.1/WeibullR/R/MRRw3p.r | 18 WeibullR-1.1/WeibullR/R/getPercentilePlottingPositions.r | 4 WeibullR-1.1/WeibullR/R/loglikelihood.r | 2 WeibullR-1.1/WeibullR/R/lslr.r | 129 - WeibullR-1.1/WeibullR/R/mlefit.r | 373 +-- WeibullR-1.1/WeibullR/R/mleframe.r | 2 WeibullR-1.1/WeibullR/R/options.wblr.R | 14 WeibullR-1.1/WeibullR/R/p2y.r | 8 WeibullR-1.1/WeibullR/R/pivotal.rr.r | 45 WeibullR-1.1/WeibullR/R/plot.wblr.R | 3 WeibullR-1.1/WeibullR/R/simplex.r |only WeibullR-1.1/WeibullR/R/wblr.R | 6 WeibullR-1.1/WeibullR/R/wblr.conf.R | 421 ++-- WeibullR-1.1/WeibullR/R/wblrLoglike.r | 12 WeibullR-1.1/WeibullR/R/xbounds.r |only WeibullR-1.1/WeibullR/README.md |only WeibullR-1.1/WeibullR/man/FMbounds.Rd | 4 WeibullR-1.1/WeibullR/man/LRbounds.Rd | 35 WeibullR-1.1/WeibullR/man/MLEcontour.Rd | 2 WeibullR-1.1/WeibullR/man/MLEln3p.Rd | 2 WeibullR-1.1/WeibullR/man/lslr.Rd | 3 WeibullR-1.1/WeibullR/man/mlefit.Rd | 6 WeibullR-1.1/WeibullR/man/pivotal.rr.Rd | 5 WeibullR-1.1/WeibullR/man/plot.wblr.Rd | 2 WeibullR-1.1/WeibullR/man/xbounds.Rd |only WeibullR-1.1/WeibullR/src/LSLR.cpp | 445 ---- WeibullR-1.1/WeibullR/src/LSLRmodel.cpp |only WeibullR-1.1/WeibullR/src/LSLRmodel.h |only WeibullR-1.1/WeibullR/src/MLEcontour.cpp | 37 WeibullR-1.1/WeibullR/src/MLEcontour.h | 9 WeibullR-1.1/WeibullR/src/MLEmodel.cpp | 466 ++++ WeibullR-1.1/WeibullR/src/MLEmodel.h | 52 WeibullR-1.1/WeibullR/src/Pivotal.cpp |only WeibullR-1.1/WeibullR/src/Pivotal.h |only WeibullR-1.1/WeibullR/src/WeibullR.h | 16 WeibullR-1.1/WeibullR/src/init.c | 34 WeibullR-1.1/WeibullR/src/pivotalMC.cpp | 1449 --------------- 48 files changed, 1681 insertions(+), 2842 deletions(-)
Title: Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Description: Tools to analyze the embryo growth and the sexualisation thermal reaction norms. See <doi:10.7717/peerj.8451> for tsd functions; see <doi:10.1016/j.jtherbio.2014.08.005> for thermal reaction norm of embryo growth.
Author: Marc Girondot <marc.girondot@gmail.com>
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between embryogrowth versions 8.1 dated 2021-06-04 and 8.2 dated 2021-09-16
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NEWS | 10 ++++++++-- R/MovingIncubation.R | 6 ++++-- R/embryogrowth-package.R | 4 ++-- R/tsd.R | 2 ++ data/DatabaseNestingArea.rda |binary data/DatabaseTSD.rda |binary data/TSP.list.rda |binary data/stages.rda |binary inst/shiny/ui.R | 4 ++-- man/embryogrowth-package.Rd | 4 ++-- 12 files changed, 36 insertions(+), 26 deletions(-)
Title: Misc Functions of the Department of Statistics, Probability
Theory Group (Formerly: E1071), TU Wien
Description: Functions for latent class analysis, short time Fourier
transform, fuzzy clustering, support vector machines,
shortest path computation, bagged clustering, naive Bayes
classifier, generalized k-nearest neighbour ...
Author: David Meyer [aut, cre],
Evgenia Dimitriadou [aut, cph],
Kurt Hornik [aut],
Andreas Weingessel [aut],
Friedrich Leisch [aut],
Chih-Chung Chang [ctb, cph] (libsvm C++-code),
Chih-Chen Lin [ctb, cph] (libsvm C++-code)
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between e1071 versions 1.7-8 dated 2021-07-28 and 1.7-9 dated 2021-09-16
e1071-1.7-8/e1071/cleanup |only e1071-1.7-8/e1071/configure |only e1071-1.7-8/e1071/configure.ac |only e1071-1.7-9/e1071/DESCRIPTION | 6 +++--- e1071-1.7-9/e1071/MD5 | 13 +++++-------- e1071-1.7-9/e1071/build/vignette.rds |binary e1071-1.7-9/e1071/inst/NEWS.Rd | 6 ++++++ e1071-1.7-9/e1071/inst/doc/svmdoc.pdf |binary e1071-1.7-9/e1071/inst/doc/svminternals.pdf |binary 9 files changed, 14 insertions(+), 11 deletions(-)
Title: Analyze Experimental High-Throughput (Omics) Data
Description: The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions.
Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc.
Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM) for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates).
Other functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc.
Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of large data-sets by combining very close values.
Many times large experimental datasets need some additional filtering, adequate functions are provided.
Batch reading (or writing) of sets of files and combining data to arrays is supported, too.
Convenient data normalization is supported in various different modes, parameter estimation via permutations or boot-strap as well as flexible testing of multiple pair-wise combinations using the framework of 'limma' is provided, too.
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrMisc versions 1.6.1 dated 2021-08-11 and 1.6.2 dated 2021-09-16
DESCRIPTION | 13 MD5 | 48 - R/asSepList.R | 113 ++-- R/convToNum.R | 148 +++-- R/extrColsDeX.R | 15 R/partUnlist.R | 20 R/readCsvBatch.R | 132 ++--- R/readVarColumns.R | 70 +- R/readXlsxBatch.R | 160 +++--- R/rnormW.R | 2 R/stableMode.R | 30 + R/sysDate.R | 40 - build/vignette.rds |binary inst/doc/wrMiscVignette1.R | 127 +++- inst/doc/wrMiscVignette1.Rmd | 156 ++++-- inst/doc/wrMiscVignette1.html | 1077 ++++++++++++++++++++++-------------------- man/asSepList.Rd | 21 man/convToNum.Rd | 26 - man/extrColsDeX.Rd | 6 man/partUnlist.Rd | 10 man/readCsvBatch.Rd | 8 man/readXlsxBatch.Rd | 6 man/stableMode.Rd | 10 man/sysDate.Rd | 12 vignettes/wrMiscVignette1.Rmd | 156 ++++-- 25 files changed, 1379 insertions(+), 1027 deletions(-)
Title: Transformation Models
Description: Formula-based user-interfaces to specific transformation models
implemented in package 'mlt'. Available models include Cox models, some parametric
survival models (Weibull, etc.), models for ordered categorical variables,
normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression
(Lohse et al., 2017, <DOI:10.12688/f1000research.12934.1>). The underlying theory
is described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>. An extension to
transformation models for clustered data is provided (Hothorn, 2019, <arxiv:1910.09219>).
Multivariate conditional transformation models (<arxiv:1906.03151>) can be fitted as well.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>),
Luisa Barbanti [aut],
Brian Ripley [ctb],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Nadja Klein [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between tram versions 0.6-0 dated 2021-03-10 and 0.6-1 dated 2021-09-16
tram-0.6-0/tram/tests/Rplots.pdf |only tram-0.6-1/tram/DESCRIPTION | 8 tram-0.6-1/tram/MD5 | 27 - tram-0.6-1/tram/NAMESPACE | 2 tram-0.6-1/tram/R/methods.R | 311 +++++++++++++ tram-0.6-1/tram/R/mmlt.R | 832 +++++++++++++++++++++++-------------- tram-0.6-1/tram/build/partial.rdb |binary tram-0.6-1/tram/build/vignette.rds |binary tram-0.6-1/tram/inst/NEWS.Rd | 10 tram-0.6-1/tram/inst/doc/mtram.pdf |binary tram-0.6-1/tram/inst/doc/tram.Rnw | 4 tram-0.6-1/tram/inst/doc/tram.pdf |binary tram-0.6-1/tram/man/mmlt.Rd | 13 tram-0.6-1/tram/man/tram.Rd | 2 tram-0.6-1/tram/vignettes/tram.Rnw | 4 15 files changed, 885 insertions(+), 328 deletions(-)
Title: Functions for Analyzing and Plotting Estuary Monitoring Data
Description: Tools for performing routine analysis and plotting tasks with environmental
data from the System Wide Monitoring Program of the National Estuarine
Research Reserve System <http://cdmo.baruch.sc.edu/>. This package builds
on the functionality of the SWMPr package <https://cran.r-project.org/package=SWMPr>,
which is used to retrieve and organize the data. The combined set of tools
address common challenges associated with continuous time series data
for environmental decision making, and are intended for use in annual reporting activities.
References:
Beck, Marcus W. (2016) <ISSN 2073-4859><https://journal.r-project.org/archive/2016-1/beck.pdf>
Rudis, Bob (2014) <https://rud.is/b/2014/11/16/moving-the-earth-well-alaska-hawaii-with-r/>.
United States Environmental Protection Agency (2015) <https://cfpub.epa.gov/si/si_public_record_Report.cfm?Lab=OWOW&dirEntryId=327030>.
United States Environmental Protection Agency (2012) <http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.646.1973&rep=rep1&type=pdf>.
Author: Julie Padilla [aut, ctb],
Marcus Beck [ctb],
Kimberly Cressman [ctb],
Dave Eslinger [cre, ctb],
Bob Rudis [ctb]
Maintainer: Dave Eslinger <dave.eslinger@noaa.gov>
Diff between SWMPrExtension versions 1.1.6 dated 2020-08-30 and 1.1.7 dated 2021-09-16
DESCRIPTION | 12 +- MD5 | 108 +++++++++++----------- NAMESPACE | 3 NEWS.md | 19 +++ R/annual_range.R | 2 R/historical_range.R | 2 R/lm_p_labs.R | 9 + R/res_local_map.R | 4 R/res_sk_map.R | 4 R/sampling_stations.R | 2 R/sampling_stations_backup.R |only R/seasonal_dot.R | 18 +++ R/summarise_handoff_files.R | 11 +- R/threshold_identification.R | 2 R/threshold_percentile_plot.R | 16 ++- R/threshold_summary.R | 5 - R/update_sampling_stations.R |only R/y_labeler.R | 6 - data/cbm_spatial.rda |binary data/elk_spatial.rda |binary data/elknmnut.rda |binary data/elksmwq.rda |binary data/sampling_stations.rda |binary data/sampling_stations_backup.rda |only data/us_laea.rda |binary inst/extdata/sampling_stations.csv |only man/annual_range.Rd | 166 +++++++++++++++++----------------- man/assign_season.Rd | 146 ++++++++++++++--------------- man/create_sk_flextable_list.Rd | 130 +++++++++++++------------- man/create_sk_national_ft_reserves.Rd | 76 +++++++-------- man/ft_col_names.Rd | 48 ++++----- man/generate_results_table.Rd | 56 +++++------ man/generate_station_table.Rd | 52 +++++----- man/geographic_unique_stations.Rd | 62 ++++++------ man/get_reserve.Rd | 48 ++++----- man/get_shp_name.Rd | 48 ++++----- man/get_site_code.Rd | 48 ++++----- man/get_site_coordinates.Rd | 52 +++++----- man/get_sites.Rd | 70 +++++++------- man/import_local_nut.Rd | 84 ++++++++--------- man/raw_boxplot.Rd | 152 +++++++++++++++---------------- man/remove_inf_and_nan.Rd | 48 ++++----- man/res_custom_map.Rd | 150 +++++++++++++++--------------- man/res_local_map.Rd | 4 man/res_sk_map.Rd | 4 man/sampling_stations.Rd | 2 man/sampling_stations_backup.Rd |only man/set_date_break_labs.Rd | 54 +++++------ man/set_date_breaks.Rd | 54 +++++------ man/sk_seasonal.Rd | 130 +++++++++++++------------- man/sk_tidy.Rd | 64 ++++++------- man/std_param_check.Rd | 66 ++++++------- man/summarise_handoff_files.Rd | 56 +++++------ man/threshold_percentile_plot.Rd | 8 - man/title_labeler.Rd | 56 +++++------ man/update_sampling_stations.Rd |only man/y_count_labeler.Rd | 86 ++++++++--------- man/y_labeler.Rd | 64 ++++++------- 58 files changed, 1178 insertions(+), 1129 deletions(-)
More information about SWMPrExtension at CRAN
Permanent link
Title: Efficient Estimation of Covariance and (Partial) Correlation
Description: Implements a James-Stein-type shrinkage estimator for
the covariance matrix, with separate shrinkage for variances and correlations.
The details of the method are explained in Schafer and Strimmer (2005)
<DOI:10.2202/1544-6115.1175> and Opgen-Rhein and Strimmer (2007)
<DOI:10.2202/1544-6115.1252>. The approach is both computationally as well
as statistically very efficient, it is applicable to "small n, large p" data,
and always returns a positive definite and well-conditioned covariance matrix.
In addition to inferring the covariance matrix the package also provides
shrinkage estimators for partial correlations and partial variances.
The inverse of the covariance and correlation matrix
can be efficiently computed, as well as any arbitrary power of the
shrinkage correlation matrix. Furthermore, functions are available for fast
singular value decomposition, for computing the pseudoinverse, and for
checking the rank and positive definiteness of a matrix.
Author: Juliane Schafer, Rainer Opgen-Rhein, Verena Zuber, Miika Ahdesmaki,
A. Pedro Duarte Silva, and Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between corpcor versions 1.6.9 dated 2017-04-01 and 1.6.10 dated 2021-09-16
DESCRIPTION | 10 +++++----- MD5 | 32 ++++++++++++++++---------------- NEWS | 3 +++ man/cor2pcor.Rd | 2 +- man/corpcor.package.Rd | 4 ++-- man/cov.shrink.Rd | 2 +- man/fast.svd.Rd | 2 +- man/invcov.shrink.Rd | 2 +- man/mpower.Rd | 2 +- man/pcor.shrink.Rd | 2 +- man/powcor.shrink.Rd | 2 +- man/pseudoinverse.Rd | 2 +- man/rank.condition.Rd | 2 +- man/rebuild.cov.Rd | 2 +- man/shrink.intensity.Rd | 2 +- man/smtools.Rd | 2 +- man/wt.scale.Rd | 2 +- 17 files changed, 39 insertions(+), 36 deletions(-)
Title: Key and Secret Management in 'Azure'
Description: Manage keys, certificates, secrets, and storage accounts in Microsoft's 'Key Vault' service: <https://azure.microsoft.com/services/key-vault/>. Provides facilities to store and retrieve secrets, use keys to encrypt, decrypt, sign and verify data, and manage certificates. Integrates with the 'AzureAuth' package to enable authentication with a certificate, and with the 'openssl' package for importing and exporting cryptographic objects. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between AzureKeyVault versions 1.0.4 dated 2020-10-12 and 1.0.5 dated 2021-09-16
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 5 +++++ R/AzureKeyVault.R | 2 +- R/vault_endpoint.R | 25 ++++++++++++++++++++----- man/AzureKeyVault.Rd | 7 +------ man/az_key_vault.Rd | 9 ++------- man/certificate.Rd | 2 +- man/create_key_vault.Rd | 2 +- man/helpers.Rd | 37 ++++++++++++++++++++++++------------- man/key_vault.Rd | 29 ++++++++++++++++++++++++----- man/vault_access_policy.Rd | 11 ++++++++--- 12 files changed, 102 insertions(+), 57 deletions(-)
Title: eBird Data Extraction and Processing in R
Description: Extract and process bird sightings records from
eBird (<http://ebird.org>), an online tool for recording bird
observations. Public access to the full eBird database is via the
eBird Basic Dataset (EBD; see <http://ebird.org/ebird/data/download>
for access), a downloadable text file. This package is an interface to
AWK for extracting data from the EBD based on taxonomic, spatial, or
temporal filters, to produce a manageable file size that can be
imported into R.
Author: Matthew Strimas-Mackey [aut, cre]
(<https://orcid.org/0000-0001-8929-7776>),
Eliot Miller [aut],
Wesley Hochachka [aut],
Cornell Lab of Ornithology [cph]
Maintainer: Matthew Strimas-Mackey <mes335@cornell.edu>
Diff between auk versions 0.4.4 dated 2021-07-21 and 0.5.0 dated 2021-09-16
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/auk-version.r | 6 +++--- build/vignette.rds |binary data/ebird_taxonomy.rda |binary inst/doc/auk.html | 34 ++++++++++++++++------------------ 7 files changed, 32 insertions(+), 30 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general
engine for big data processing, see <http://spark.apache.org>. This
package supports connecting to local and remote Apache Spark clusters,
provides a 'dplyr' compatible back-end, and provides an interface to
Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
Hossein Falaki [aut],
Lu Wang [aut],
Andy Zhang [aut],
Yitao Li [aut, cre] (<https://orcid.org/0000-0002-1261-905X>),
Jozef Hajnala [ctb],
Maciej Szymkiewicz [ctb] (<https://orcid.org/0000-0003-1469-9396>),
Wil Davis [ctb],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Yitao Li <yitao@rstudio.com>
Diff between sparklyr versions 1.7.1 dated 2021-06-17 and 1.7.2 dated 2021-09-16
sparklyr-1.7.1/sparklyr/R/logs |only sparklyr-1.7.2/sparklyr/DESCRIPTION | 10 - sparklyr-1.7.2/sparklyr/MD5 | 67 +++++----- sparklyr-1.7.2/sparklyr/NAMESPACE | 4 sparklyr-1.7.2/sparklyr/NEWS.md | 57 ++++++++ sparklyr-1.7.2/sparklyr/R/config_spark.R | 7 - sparklyr-1.7.2/sparklyr/R/connection_spark.R | 2 sparklyr-1.7.2/sparklyr/R/core_deserialize.R | 4 sparklyr-1.7.2/sparklyr/R/data_interface.R | 21 ++- sparklyr-1.7.2/sparklyr/R/databricks_connection.R | 8 - sparklyr-1.7.2/sparklyr/R/dplyr_spark.R | 4 sparklyr-1.7.2/sparklyr/R/dplyr_spark_connection.R | 45 ++++++ sparklyr-1.7.2/sparklyr/R/java.R | 4 sparklyr-1.7.2/sparklyr/R/livy_connection.R | 6 sparklyr-1.7.2/sparklyr/R/ml_fpm_prefixspan.R | 27 ++++ sparklyr-1.7.2/sparklyr/R/na_actions.R | 12 + sparklyr-1.7.2/sparklyr/R/reexports.R | 9 + sparklyr-1.7.2/sparklyr/README.md | 2 sparklyr-1.7.2/sparklyr/build/partial.rdb |binary sparklyr-1.7.2/sparklyr/inst/java/sparklyr-1.5-2.10.jar |binary sparklyr-1.7.2/sparklyr/inst/java/sparklyr-1.6-2.10.jar |binary sparklyr-1.7.2/sparklyr/inst/java/sparklyr-2.0-2.11.jar |binary sparklyr-1.7.2/sparklyr/inst/java/sparklyr-2.3-2.11.jar |binary sparklyr-1.7.2/sparklyr/inst/java/sparklyr-2.4-2.11.jar |binary sparklyr-1.7.2/sparklyr/inst/java/sparklyr-2.4-2.12.jar |binary sparklyr-1.7.2/sparklyr/inst/java/sparklyr-master-2.12.jar |binary sparklyr-1.7.2/sparklyr/java/embedded_sources.R | 4 sparklyr-1.7.2/sparklyr/java/spark-1.5.2/backend.scala | 46 +++++- sparklyr-1.7.2/sparklyr/java/spark-1.5.2/backendconf.scala |only sparklyr-1.7.2/sparklyr/java/spark-1.5.2/backendconfconstants.scala |only sparklyr-1.7.2/sparklyr/java/spark-1.5.2/channel.scala | 10 - sparklyr-1.7.2/sparklyr/java/spark-1.5.2/handler.scala | 5 sparklyr-1.7.2/sparklyr/java/spark-1.5.2/shell.scala | 20 ++ sparklyr-1.7.2/sparklyr/java/spark-1.5.2/stream.scala | 5 sparklyr-1.7.2/sparklyr/java/spark-2.0.0/backendconf.scala |only sparklyr-1.7.2/sparklyr/man/ml_prefixspan.Rd | 27 ++++ sparklyr-1.7.2/sparklyr/man/replace_na.Rd |only 37 files changed, 318 insertions(+), 88 deletions(-)
Title: Interactively Explore Dimension-Reduced Embeddings
Description: A tool to interactively explore the
embeddings created by dimension reduction methods such as
Principal Components Analysis (PCA), Multidimensional Scaling (MDS),
T-distributed Stochastic Neighbour Embedding (t-SNE),
Uniform Manifold Approximation and Projection (UMAP) or any other.
Author: Svetlana Ovchinnikova [aut, cre],
Simon Anders [aut]
Maintainer: Svetlana Ovchinnikova <s.ovchinnikova@zmbh.uni-heidelberg.de>
Diff between sleepwalk versions 0.3.1 dated 2020-09-29 and 0.3.2 dated 2021-09-16
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- NEWS.md | 4 ++++ R/sleepwalk.R | 4 ++-- build |only man/dot-slw.Rd | 4 +++- man/sleepwalk.Rd | 2 +- 7 files changed, 22 insertions(+), 15 deletions(-)
Title: Bhavcopy and Live Market Data from National Stock Exchange (NSE)
India for Equities and Equity Derivatives (F&O)
Description: Download Historical Bhavcopy and get Live Market data from NSE India of Equities and Derivatives(F&O) segment. Data source <https://www.nseindia.com/>.
Author: Nandan Patil [cre, aut]
Maintainer: Nandan Patil <tryanother609@gmail.com>
Diff between nser versions 1.3.1 dated 2021-09-13 and 1.3.2 dated 2021-09-16
nser-1.3.1/nser/inst/doc/optbanknifty.R |only nser-1.3.1/nser/inst/doc/optbanknifty.Rmd |only nser-1.3.1/nser/inst/doc/optbanknifty.html |only nser-1.3.1/nser/inst/doc/optnifty.R |only nser-1.3.1/nser/inst/doc/optnifty.Rmd |only nser-1.3.1/nser/inst/doc/optnifty.html |only nser-1.3.1/nser/man/optbanknifty.Rd |only nser-1.3.1/nser/man/optnifty.Rd |only nser-1.3.1/nser/vignettes/optbanknifty.Rmd |only nser-1.3.1/nser/vignettes/optnifty.Rmd |only nser-1.3.2/nser/DESCRIPTION | 8 - nser-1.3.2/nser/MD5 | 32 ++----- nser-1.3.2/nser/NAMESPACE | 6 - nser-1.3.2/nser/R/optbanknifty.R | 132 ----------------------------- nser-1.3.2/nser/R/optnifty.R | 132 ----------------------------- nser-1.3.2/nser/R/zzz.R | 8 + nser-1.3.2/nser/build/vignette.rds |binary nser-1.3.2/nser/inst/doc/bhav.html | 2 nser-1.3.2/nser/inst/doc/bhavpr.html | 2 nser-1.3.2/nser/inst/doc/fobhav.html | 79 +++++------------ nser-1.3.2/nser/inst/doc/nseindex.html | 114 ++++++++++++------------- nser-1.3.2/nser/inst/doc/nseipo.html | 18 ++- 22 files changed, 120 insertions(+), 413 deletions(-)
Title: Simple Git Client for R
Description: Simple git client for R based on 'libgit2' with support for SSH and
HTTPS remotes. All functions in 'gert' use basic R data types (such as vectors
and data-frames) for their arguments and return values. User credentials are
shared with command line 'git' through the git-credential store and ssh keys
stored on disk or ssh-agent.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
Jennifer Bryan [ctb] (<https://orcid.org/0000-0002-6983-2759>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between gert versions 1.4.0 dated 2021-09-15 and 1.4.1 dated 2021-09-16
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 4 ++++ configure | 2 +- inst/doc/gert.html | 10 +++++----- src/utils.c | 4 ---- src/utils.h | 4 ++++ 7 files changed, 23 insertions(+), 19 deletions(-)
Title: An Automated Cleaning Tool for Semantic and Linguistic Data
Description: Implements several functions that automates the cleaning and spell-checking of text data. Also converges, finalizes, removes plurals and continuous strings, and puts text data in binary format for semantic network analysis. Uses the 'SemNetDictionaries' package to make the cleaning process more accurate, efficient, and reproducible.
Author: Alexander P. Christensen [aut, cre]
(<https://orcid.org/0000-0002-9798-7037>)
Maintainer: Alexander P. Christensen <alexpaulchristensen@gmail.com>
Diff between SemNetCleaner versions 1.3.3 dated 2021-08-16 and 1.3.4 dated 2021-09-16
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NAMESPACE | 1 + NEWS | 5 +++++ R/correct.changes.R | 9 +++++++-- inst/Shiny/app.R | 5 ++++- inst/doc/Estimating.html | 2 +- inst/doc/Preprocessing.html | 2 +- 8 files changed, 31 insertions(+), 17 deletions(-)
Title: Automatic Shift Detection using a Phylogenetic EM
Description: Implementation of the automatic shift detection method for
Brownian Motion (BM) or Ornstein–Uhlenbeck (OU) models of trait evolution on
phylogenies. Some tools to handle equivalent shifts configurations are also
available. See Bastide et al. (2017) <doi:10.1111/rssb.12206> and
Bastide et al. (2018) <doi:10.1093/sysbio/syy005>.
Author: Paul Bastide [aut, cre],
Mahendra Mariadassou [ctb]
Maintainer: Paul Bastide <paul.bastide@m4x.org>
Diff between PhylogeneticEM versions 1.4.0 dated 2020-02-11 and 1.5.0 dated 2021-09-16
DESCRIPTION | 10 MD5 | 46 +- NEWS.md | 10 R/estimateEM.R | 50 ++ build/vignette.rds |binary inst/CITATION | 2 inst/doc/monkeys.R | 199 +++++++-- inst/doc/monkeys.Rmd | 126 +++++- inst/doc/monkeys.html | 416 ++++++-------------- inst/doc/tutorial.R | 68 ++- inst/doc/tutorial.Rmd | 46 ++ inst/doc/tutorial.html | 341 ++++------------ man/PhyloEM.Rd | 3 man/check_data.Rd | 2 man/estimateEM.Rd | 9 man/monkeys.Rd | 6 man/simulate_internal.Rd | 4 src/RcppExports.cpp | 5 src/upward_downward.cpp | 2 tests/testthat/test-utilities-handling_parameters.R | 12 tests/testthat/test-utilities-rotations.R | 116 +++++ tests/testthat/test-utilities-simulate.R | 106 ++--- vignettes/monkeys.Rmd | 126 +++++- vignettes/tutorial.Rmd | 46 ++ 24 files changed, 1052 insertions(+), 699 deletions(-)
More information about PhylogeneticEM at CRAN
Permanent link
Title: Sentiment Analysis Scorer
Description: Sentiment analysis is a popular technique in text mining that
attempts to determine the emotional state of some text. We provide a new
implementation of a common method for computing sentiment, whereby words are
scored as positive or negative according to a dictionary lookup. Then the
sum of those scores is returned for the document. We use the 'Hu' and 'Liu'
sentiment dictionary ('Hu' and 'Liu', 2004) <doi:10.1145/1014052.1014073>
for determining sentiment. The scoring function is 'vectorized' by document,
and scores for multiple documents are computed in parallel via 'OpenMP'.
Author: Drew Schmidt [aut, cre]
Maintainer: Drew Schmidt <wrathematics@gmail.com>
Diff between meanr versions 0.1-2 dated 2019-07-19 and 0.1-3 dated 2021-09-16
ChangeLog | 3 DESCRIPTION | 7 -- MD5 | 14 ++-- README.md | 4 - configure | 178 --------------------------------------------------- configure.ac | 8 +- src/meanr_nthreads.c | 8 +- src/score.c | 2 8 files changed, 26 insertions(+), 198 deletions(-)
Title: Access Data from the 'Hlídač Státu' API
Description: Provides access to datasets published by 'Hlídač státu' <https://www.hlidacstatu.cz/>,
a Czech watchdog, via their API.
Author: Michael Škvrňák [aut, cre] (<https://orcid.org/0000-0003-4647-4095>)
Maintainer: Michael Škvrňák <michael.skvrnak@protonmail.com>
Diff between hlidacr versions 0.1.3 dated 2021-03-04 and 0.2.0 dated 2021-09-16
DESCRIPTION | 9 MD5 | 78 - NAMESPACE | 1 NEWS.md | 8 R/api.R | 188 ++- R/helpers.R | 5 README.md | 157 +-- inst/doc/ministers.html | 270 ----- man/get_company.Rd | 8 man/get_contract.Rd | 2 man/get_contract_text.Rd | 2 man/get_dataset_data.Rd | 10 man/get_dataset_metadata.Rd | 2 man/get_dataset_record_detail.Rd | 2 man/get_datasets.Rd | 8 man/get_person.Rd | 23 man/get_person_social.Rd | 17 man/get_subsidy.Rd | 2 man/get_website_detail.Rd | 6 man/get_websites.Rd | 2 man/search_contracts.Rd | 4 man/search_person.Rd | 28 man/search_person_by_parameters.Rd |only man/search_subsidies.Rd | 10 tests/fixtures/get_company.yml | 18 tests/fixtures/get_contract.yml | 31 tests/fixtures/get_contract_text.yml | 16 tests/fixtures/get_dataset_data.yml | 34 tests/fixtures/get_dataset_metadata.yml | 36 tests/fixtures/get_dataset_record_detail.yml | 16 tests/fixtures/get_datasets.yml | 1193 +++++++++---------------- tests/fixtures/get_person.yml | 198 ++-- tests/fixtures/get_person_social.yml | 189 ++- tests/fixtures/get_subsidy.yml | 24 tests/fixtures/get_website_detail.yml | 22 tests/fixtures/get_websites.yml | 31 tests/fixtures/search_contracts.yml | 434 ++++----- tests/fixtures/search_person.yml | 22 tests/fixtures/search_person_by_parameters.yml |only tests/fixtures/search_subsidies.yml | 194 ++-- tests/testthat/test-vcr.R | 66 - 41 files changed, 1520 insertions(+), 1846 deletions(-)
Title: Flexible Inference via Permutations in R
Description: A flexible permutation framework for making
inference such as point estimation, confidence
intervals or hypothesis testing, on any kind of data,
be it univariate, multivariate, or more complex such
as network-valued data, topological data, functional
data or density-valued data.
Author: Alessia Pini [aut],
Aymeric Stamm [aut, cre] (<https://orcid.org/0000-0002-8725-3654>),
Simone Vantini [aut],
Juliette Chiapello [ctb]
Maintainer: Aymeric Stamm <aymeric.stamm@math.cnrs.fr>
Diff between flipr versions 0.3.0 dated 2021-09-01 and 0.3.1 dated 2021-09-16
DESCRIPTION | 8 +- MD5 | 45 ++++++++-------- NEWS.md | 7 ++ R/grid-biregular.R |only R/one-sample-stats.R | 3 - R/one-sample-test.R | 8 +- R/plausibility-class.R | 40 +++++++++++--- R/pvalue.R | 41 +++++++++++---- R/two-sample-stats.R | 27 +++++----- R/two-sample-test.R | 15 ++--- R/utils.R | 118 ++++++-------------------------------------- R/viz.R | 2 build/vignette.rds |binary inst/doc/exactness.html | 2 inst/doc/flipr.R | 6 +- inst/doc/flipr.Rmd | 6 +- inst/doc/flipr.html | 6 +- man/PlausibilityFunction.Rd | 17 +++++- man/grid_biregular.Rd | 10 +-- man/one-sample-stats.Rd | 4 + man/one_sample_test.Rd | 5 + man/two-sample-stats.Rd | 36 +++++++------ man/two_sample_test.Rd | 5 + vignettes/flipr.Rmd | 6 +- 24 files changed, 206 insertions(+), 211 deletions(-)
Title: Climate AEMET Tools
Description: Tools to download the climatic data of the Spanish
Meteorological Agency (AEMET) directly from R using their API and
create scientific graphs (climate charts, trend analysis of climate
time series, temperature and precipitation anomalies maps, warming
stripes graphics, climatograms, etc.).
Author: Manuel Pizarro [aut, cph] (<https://orcid.org/0000-0002-6981-0154>),
Diego Hernangómez [aut, cre] (<https://orcid.org/0000-0001-8457-4658>,
rOpenSpain),
Gema Fernández-Avilés [aut] (<https://orcid.org/0000-0001-5934-1916>)
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>
Diff between climaemet versions 0.2.0 dated 2020-07-17 and 1.0.0 dated 2021-09-16
climaemet-0.2.0/climaemet/R/aemet_tools.R |only climaemet-0.2.0/climaemet/R/climaemet_main.R |only climaemet-0.2.0/climaemet/R/plot_tools.R |only climaemet-0.2.0/climaemet/R/utils-pipe.R |only climaemet-0.2.0/climaemet/man/aemet_daily_clim.Rd |only climaemet-0.2.0/climaemet/man/aemet_daily_period.Rd |only climaemet-0.2.0/climaemet/man/aemet_daily_period_all.Rd |only climaemet-0.2.0/climaemet/man/aemet_monthly_clim.Rd |only climaemet-0.2.0/climaemet/man/aemet_monthly_period.Rd |only climaemet-0.2.0/climaemet/man/aemet_monthly_period_all.Rd |only climaemet-0.2.0/climaemet/man/aemet_normal_clim.Rd |only climaemet-0.2.0/climaemet/man/aemet_normal_clim_all.Rd |only climaemet-0.2.0/climaemet/man/figures/climatogram.jpeg |only climaemet-0.2.0/climaemet/man/figures/stripes.jpeg |only climaemet-0.2.0/climaemet/man/figures/windrose.jpeg |only climaemet-0.2.0/climaemet/man/first_day_of_year.Rd |only climaemet-0.2.0/climaemet/man/last_day_of_year.Rd |only climaemet-0.2.0/climaemet/man/pipe.Rd |only climaemet-1.0.0/climaemet/DESCRIPTION | 62 - climaemet-1.0.0/climaemet/MD5 | 104 + climaemet-1.0.0/climaemet/NAMESPACE | 55 - climaemet-1.0.0/climaemet/NEWS.md | 66 - climaemet-1.0.0/climaemet/R/aemet_api_key.R |only climaemet-1.0.0/climaemet/R/aemet_api_query.R |only climaemet-1.0.0/climaemet/R/aemet_daily.R |only climaemet-1.0.0/climaemet/R/aemet_extremes.R |only climaemet-1.0.0/climaemet/R/aemet_last_obs.R |only climaemet-1.0.0/climaemet/R/aemet_monthly.R |only climaemet-1.0.0/climaemet/R/aemet_normal.R |only climaemet-1.0.0/climaemet/R/aemet_stations.R |only climaemet-1.0.0/climaemet/R/climaemet-package.R | 16 climaemet-1.0.0/climaemet/R/climaemet_news.R |only climaemet-1.0.0/climaemet/R/climatogram.R |only climaemet-1.0.0/climaemet/R/data.R |only climaemet-1.0.0/climaemet/R/helpers.R |only climaemet-1.0.0/climaemet/R/stripes.R |only climaemet-1.0.0/climaemet/R/utils.R |only climaemet-1.0.0/climaemet/R/windrose.R |only climaemet-1.0.0/climaemet/R/zzz.R |only climaemet-1.0.0/climaemet/README.md | 529 ++++++---- climaemet-1.0.0/climaemet/build |only climaemet-1.0.0/climaemet/data |only climaemet-1.0.0/climaemet/inst/CITATION | 30 climaemet-1.0.0/climaemet/inst/WORDLIST |only climaemet-1.0.0/climaemet/inst/doc |only climaemet-1.0.0/climaemet/inst/examples |only climaemet-1.0.0/climaemet/man/aemet_api_key.Rd |only climaemet-1.0.0/climaemet/man/aemet_daily.Rd |only climaemet-1.0.0/climaemet/man/aemet_detect_api_key.Rd |only climaemet-1.0.0/climaemet/man/aemet_extremes_clim.Rd | 86 + climaemet-1.0.0/climaemet/man/aemet_last_obs.Rd | 74 - climaemet-1.0.0/climaemet/man/aemet_monthly.Rd |only climaemet-1.0.0/climaemet/man/aemet_normal.Rd |only climaemet-1.0.0/climaemet/man/aemet_stations.Rd | 74 - climaemet-1.0.0/climaemet/man/climaemet-package.Rd | 58 - climaemet-1.0.0/climaemet/man/climaemet_9434_climatogram.Rd |only climaemet-1.0.0/climaemet/man/climaemet_9434_temp.Rd |only climaemet-1.0.0/climaemet/man/climaemet_9434_wind.Rd |only climaemet-1.0.0/climaemet/man/climaemet_news.Rd |only climaemet-1.0.0/climaemet/man/climatestripes_station.Rd | 112 +- climaemet-1.0.0/climaemet/man/climatogram_normal.Rd | 105 + climaemet-1.0.0/climaemet/man/climatogram_period.Rd | 121 +- climaemet-1.0.0/climaemet/man/day_of_year.Rd |only climaemet-1.0.0/climaemet/man/dms2decdegrees.Rd | 55 - climaemet-1.0.0/climaemet/man/figures/README-climatestripes-1.png |only climaemet-1.0.0/climaemet/man/figures/README-climatogram-1.png |only climaemet-1.0.0/climaemet/man/figures/README-spatial-1.png |only climaemet-1.0.0/climaemet/man/figures/README-windrose-1.png |only climaemet-1.0.0/climaemet/man/figures/lifecycle-experimental.svg |only climaemet-1.0.0/climaemet/man/figures/logo.png |binary climaemet-1.0.0/climaemet/man/get_data_aemet.Rd | 67 - climaemet-1.0.0/climaemet/man/ggclimat_walter_lieth.Rd |only climaemet-1.0.0/climaemet/man/ggstripes.Rd | 118 +- climaemet-1.0.0/climaemet/man/ggwindrose.Rd | 169 +-- climaemet-1.0.0/climaemet/man/windrose_days.Rd | 138 +- climaemet-1.0.0/climaemet/man/windrose_period.Rd | 137 +- climaemet-1.0.0/climaemet/vignettes |only 77 files changed, 1377 insertions(+), 799 deletions(-)
Title: Simple Imputation
Description: Easy to use interfaces to a number of imputation methods
that fit in the not-a-pipe operator of the 'magrittr' package.
Author: Mark van der Loo [aut, cre]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between simputation versions 0.2.6 dated 2021-01-25 and 0.2.7 dated 2021-09-16
DESCRIPTION | 7 -- MD5 | 18 +++-- NAMESPACE | 3 NEWS | 5 + R/utils.R | 150 ++++++++++++++++++++++++++++++++++++++++++++++++ build/vignette.rds |binary inst/doc/intro.html | 25 +++++--- man/glimpse_na.Rd |only man/na_status.Rd |only src/R_register_native.c | 8 ++ src/pmm.c | 5 - 11 files changed, 194 insertions(+), 27 deletions(-)
Title: Assemble Data Frames from HTML Tables
Description: HTML tables are a valuable data source but extracting and recasting
these data into a useful format can be tedious. This package allows to collect
structured information from HTML tables. It is similar to `readHTMLTable()`
of the XML package but provides three major advantages. First, the function
automatically expands row and column spans in the header and body cells.
Second, users are given more control over the identification of header and body
rows which will end up in the R table, including semantic header information
that appear throughout the body. Third, the function preprocesses table code,
corrects common types of malformations, removes unneeded parts and so helps to
alleviate the need for tedious post-processing.
Author: Christian Rubba [aut],
Gerhard Burger [ctb, cre] (<https://orcid.org/0000-0003-1062-5576>),
Roman Cheplyaka [ctb]
Maintainer: Gerhard Burger <burger.ga@gmail.com>
Diff between htmltab versions 0.8.1 dated 2021-03-08 and 0.8.2 dated 2021-09-16
DESCRIPTION | 7 +++---- MD5 | 16 ++++++++-------- NEWS.md | 6 ++++++ README.md | 4 +++- build/vignette.rds |binary inst/doc/htmltab.R | 2 +- inst/doc/htmltab.Rmd | 2 +- inst/doc/htmltab.html | 16 ++++++++++++---- vignettes/htmltab.Rmd | 2 +- 9 files changed, 35 insertions(+), 20 deletions(-)
Title: An S4 Lattice-Based Package for the Representation of
Multivariate Data
Description: Graphical functionalities for the representation of multivariate data. It is a complete re-implementation of the functions available in the 'ade4' package.
Author: Stéphane Dray <stephane.dray@univ-lyon1.fr> and Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>, with contributions from Jean Thioulouse. Based on earlier work by Alice Julien-Laferrière.
Maintainer: Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between adegraphics versions 1.0-15 dated 2018-12-18 and 1.0-16 dated 2021-09-16
adegraphics-1.0-15/adegraphics/tests/scatter.R |only adegraphics-1.0-16/adegraphics/DESCRIPTION | 14 adegraphics-1.0-16/adegraphics/MD5 | 65 adegraphics-1.0-16/adegraphics/NAMESPACE | 2 adegraphics-1.0-16/adegraphics/R/ADEg.S2.R | 2 adegraphics-1.0-16/adegraphics/R/ADEgS.R | 1020 +++++++------- adegraphics-1.0-16/adegraphics/R/C1.barchart.R | 15 adegraphics-1.0-16/adegraphics/R/S2.value.R | 4 adegraphics-1.0-16/adegraphics/R/T.value.R | 4 adegraphics-1.0-16/adegraphics/R/addtext.R | 44 adegraphics-1.0-16/adegraphics/R/ade4-kplot.R | 8 adegraphics-1.0-16/adegraphics/R/ade4-plot.R | 127 + adegraphics-1.0-16/adegraphics/R/ade4-scatter.R | 16 adegraphics-1.0-16/adegraphics/R/ade4-score.R | 20 adegraphics-1.0-16/adegraphics/R/panelfunctions.R | 6 adegraphics-1.0-16/adegraphics/R/parameter.R | 2 adegraphics-1.0-16/adegraphics/R/s.Spatial.R | 10 adegraphics-1.0-16/adegraphics/R/utilskey.R | 4 adegraphics-1.0-16/adegraphics/build/vignette.rds |binary adegraphics-1.0-16/adegraphics/inst/CITATION | 20 adegraphics-1.0-16/adegraphics/inst/doc/adegraphics.R | 116 - adegraphics-1.0-16/adegraphics/inst/doc/adegraphics.Rmd | 2 adegraphics-1.0-16/adegraphics/inst/doc/adegraphics.html | 920 ++++++++---- adegraphics-1.0-16/adegraphics/man/C1.barchart-class.Rd | 5 adegraphics-1.0-16/adegraphics/man/addtext.Rd | 4 adegraphics-1.0-16/adegraphics/man/plot.Rd | 4 adegraphics-1.0-16/adegraphics/man/s.Spatial.Rd | 4 adegraphics-1.0-16/adegraphics/man/s1d.barchart.Rd | 6 adegraphics-1.0-16/adegraphics/man/s1d.label.Rd | 2 adegraphics-1.0-16/adegraphics/tests/ade4-functions.R |only adegraphics-1.0-16/adegraphics/tests/panelSpatial.R | 4 adegraphics-1.0-16/adegraphics/tests/s1d.barchart.R |only adegraphics-1.0-16/adegraphics/vignettes/adegraphics.Rmd | 2 adegraphics-1.0-16/adegraphics/vignettes/adegraphics.bib | 2 adegraphics-1.0-16/adegraphics/vignettes/gargsVSclass.csv | 2 35 files changed, 1441 insertions(+), 1015 deletions(-)
Title: Analysis of Ecological Data: Exploratory and Euclidean Methods
in Environmental Sciences
Description: Tools for multivariate data analysis. Several methods are provided for the analysis (i.e., ordination) of one-table (e.g., principal component analysis, correspondence analysis), two-table (e.g., coinertia analysis, redundancy analysis), three-table (e.g., RLQ analysis) and K-table (e.g., STATIS, multiple coinertia analysis). The philosophy of the package is described in Dray and Dufour (2007) <doi:10.18637/jss.v022.i04>.
Author: Stéphane Dray <stephane.dray@univ-lyon1.fr>, Anne-Béatrice Dufour <anne-beatrice.dufour@univ-lyon1.fr>, and Jean Thioulouse <jean.thioulouse@univ-lyon1.fr>, with contributions from Thibaut Jombart, Sandrine Pavoine, Jean R. Lobry, Sébastien Ollier, Daniel Borcard, Pierre Legendre, Stéphanie Bougeard and Aurélie Siberchicot. Based on earlier work by Daniel Chessel.
Maintainer: Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between ade4 versions 1.7-17 dated 2021-06-17 and 1.7-18 dated 2021-09-16
ChangeLog | 36 ++++++++++++++ DESCRIPTION | 6 +- MD5 | 16 +++--- NAMESPACE | 4 + R/loocv.R | 125 +++++++++++++++++++++++++++++++++++++++++++++++++ build/partial.rdb |binary man/loocv.bca.Rd | 15 ++++- man/loocv.discrimin.Rd | 7 ++ man/pcw.Rd | 2 9 files changed, 196 insertions(+), 15 deletions(-)
Title: Bindings for the 'Geospatial' Data Abstraction Library
Description: Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4) and access to projection/transformation operations from the 'PROJ' library. Please note that 'rgdal' will be retired by the end of 2023, plan transition to sf/stars/'terra' functions using 'GDAL' and 'PROJ' at your earliest convenience. Use is made of classes defined in the 'sp' package. Raster and vector map data can be imported into R, and raster and vector 'sp' objects exported. The 'GDAL' and 'PROJ' libraries are external to the package, and, when installing the package from source, must be correctly installed first; it is important that 'GDAL' < 3 be matched with 'PROJ' < 6. From 'rgdal' 1.5-8, installed with to 'GDAL' >=3, 'PROJ' >=6 and 'sp' >= 1.4, coordinate reference systems use 'WKT2_2019' strings, not 'PROJ' strings. 'Windows' and 'macOS' binaries (including 'GDAL', 'PROJ' and their dependencies) are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Daniel Baston [ctb],
Even Rouault [cph, ctb],
Frank Warmerdam [cph, ctb],
Jeroen Ooms [ctb],
Colin Rundel [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.5-26 dated 2021-09-15 and 1.5-27 dated 2021-09-16
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 7 ++++++- configure | 18 +++++++++--------- inst/doc/CRS_projections_transformations.R | 2 +- inst/doc/CRS_projections_transformations.Rmd | 2 +- inst/doc/CRS_projections_transformations.html | 14 +++++++------- inst/doc/OGR_shape_encoding.pdf |binary inst/doc/PROJ6_GDAL3.html | 14 +++++++------- vignettes/CRS_projections_transformations.Rmd | 2 +- 10 files changed, 45 insertions(+), 40 deletions(-)
Title: A Fully Featured Logging Framework
Description: A flexible, feature-rich yet light-weight logging
framework based on 'R6' classes. It supports hierarchical loggers,
custom log levels, arbitrary data fields in log events, logging to
plaintext, 'JSON', (rotating) files, memory buffers. For extra
appenders that support logging to databases, email and push
notifications see the the package lgr.app.
Author: Stefan Fleck [aut, cre] (<https://orcid.org/0000-0003-3344-9851>)
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Diff between lgr versions 0.4.2 dated 2021-01-10 and 0.4.3 dated 2021-09-16
DESCRIPTION | 14 +- MD5 | 52 +++++---- NAMESPACE | 6 + NEWS.md | 16 ++ R/Appender.R | 8 - R/Filter.R | 2 R/Filterable.R | 2 R/LogEvent.R | 12 -- R/Logger.R | 25 ++++ R/logger_index.R |only R/logger_tree.R | 4 R/string_repr.R |only R/utils-rd.R | 2 R/utils-rotor.R | 2 R/utils.R | 4 README.md | 107 +++++++++---------- inst/doc/lgr.Rmd | 2 inst/doc/lgr.html | 198 +++++++++++++++++-------------------- man/logger_index.Rd |only man/logger_tree.Rd | 4 man/print.Appender.Rd | 2 man/print.Logger.Rd | 2 man/string_repr.Rd |only tests/testthat/test_Appender.R | 2 tests/testthat/test_Filter.R | 2 tests/testthat/test_Layout.R | 5 tests/testthat/test_Logger.R | 20 +++ tests/testthat/test_logger_index.R |only tests/testthat/test_string_repr.R |only vignettes/lgr.Rmd | 2 30 files changed, 277 insertions(+), 218 deletions(-)
Title: Exchange Commands Between R and 'JavaScript'
Description: An 'httpuv' based bridge between R and 'JavaScript'. Provides an easy way to exchange commands and data between a web page and a currently running R session.
Author: Svetlana Ovchinnikova [aut, cre],
Simon Anders [aut]
Maintainer: Svetlana Ovchinnikova <s.ovchinnikova@zmbh.uni-heidelberg.de>
Diff between jrc versions 0.4.0 dated 2020-09-25 and 0.5.0 dated 2021-09-16
jrc-0.4.0/jrc/man/limitStorage.Rd |only jrc-0.5.0/jrc/DESCRIPTION | 8 jrc-0.5.0/jrc/MD5 | 27 +- jrc-0.5.0/jrc/NAMESPACE | 3 jrc-0.5.0/jrc/NEWS.md | 12 + jrc-0.5.0/jrc/R/jrc.R | 377 +++++++++++++++++++++------------- jrc-0.5.0/jrc/inst/http_root/jrc.js | 11 jrc-0.5.0/jrc/man/App.Rd | 14 - jrc-0.5.0/jrc/man/Session.Rd | 43 +-- jrc-0.5.0/jrc/man/allowDirectories.Rd | 2 jrc-0.5.0/jrc/man/authorize.Rd | 2 jrc-0.5.0/jrc/man/closeSession.Rd | 2 jrc-0.5.0/jrc/man/getPort.Rd |only jrc-0.5.0/jrc/man/openPage.Rd | 15 - jrc-0.5.0/jrc/man/sendCommand.Rd | 2 jrc-0.5.0/jrc/man/setLimits.Rd |only 16 files changed, 322 insertions(+), 196 deletions(-)
Title: Tools to Easily Download Data from INSEE BDM Database
Description: Using embedded sdmx queries, get the data of more than 150 000 insee series from bdm database. Have a look at the detailed sdmx web service page with the following link : <https://www.insee.fr/en/information/2868055>.
Author: Hadrien Leclerc [aut, cre],
INSEE [cph]
Maintainer: Hadrien Leclerc <leclerc.hadrien@gmail.com>
Diff between insee versions 1.1.0 dated 2021-06-04 and 1.1.1 dated 2021-09-16
DESCRIPTION | 18 +++++++++--------- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/zzz.R | 11 ++++------- README.md | 20 ++++++++++---------- inst/doc/insee.Rmd | 15 ++++++++------- inst/doc/insee.html | 14 +++++++------- tests/testthat/test_all.R | 7 +++++-- vignettes/insee.Rmd | 15 ++++++++------- 9 files changed, 64 insertions(+), 57 deletions(-)
Title: Managing and Visualizing Brain Surface Data
Description: Provides high-level access to neuroimaging data from standard software packages like 'FreeSurfer' <http://freesurfer.net/> on the level of subjects and groups. Load morphometry data, surfaces and brain parcellations based on atlases. Mask data using labels, load data for specific atlas regions only, and visualize data and statistical results directly in 'R'.
Author: Tim Schäfer [aut, cre] (<https://orcid.org/0000-0002-3683-8070>)
Maintainer: Tim Schäfer <ts+code@rcmd.org>
Diff between fsbrain versions 0.4.3 dated 2021-05-12 and 0.5.0 dated 2021-09-16
fsbrain-0.4.3/fsbrain/man/makecmakeopts.merge.Rd |only fsbrain-0.5.0/fsbrain/DESCRIPTION | 11 fsbrain-0.5.0/fsbrain/LICENSE | 2 fsbrain-0.5.0/fsbrain/MD5 | 243 +++++--- fsbrain-0.5.0/fsbrain/NAMESPACE | 30 + fsbrain-0.5.0/fsbrain/R/brain_igraph.R |only fsbrain-0.5.0/fsbrain/R/brainview_magick.R | 68 ++ fsbrain-0.5.0/fsbrain/R/cbar.R | 5 fsbrain-0.5.0/fsbrain/R/coloredmesh.R | 80 +- fsbrain-0.5.0/fsbrain/R/curvature.R | 26 fsbrain-0.5.0/fsbrain/R/fsdir_abstraction_group.R | 160 +++++ fsbrain-0.5.0/fsbrain/R/fsdir_abstraction_subject.R | 47 + fsbrain-0.5.0/fsbrain/R/geodesic.R |only fsbrain-0.5.0/fsbrain/R/helpers.R | 220 +++++-- fsbrain-0.5.0/fsbrain/R/hemilist.R | 32 + fsbrain-0.5.0/fsbrain/R/highlight.R |only fsbrain-0.5.0/fsbrain/R/metadata_io.R | 85 ++ fsbrain-0.5.0/fsbrain/R/morph_atlas_agg.R | 2 fsbrain-0.5.0/fsbrain/R/optdata.R | 42 + fsbrain-0.5.0/fsbrain/R/rglactions.R | 81 +- fsbrain-0.5.0/fsbrain/R/smooth.R |only fsbrain-0.5.0/fsbrain/R/spatial.R |only fsbrain-0.5.0/fsbrain/R/vis.R | 288 ++++++---- fsbrain-0.5.0/fsbrain/R/vis_group.R | 18 fsbrain-0.5.0/fsbrain/R/vis_meshes.R | 38 + fsbrain-0.5.0/fsbrain/R/vis_multiview.R | 120 +++- fsbrain-0.5.0/fsbrain/R/vis_surface_background.R | 64 +- fsbrain-0.5.0/fsbrain/R/vis_volume.R | 191 ++++++ fsbrain-0.5.0/fsbrain/inst/doc/fsbrain.R | 2 fsbrain-0.5.0/fsbrain/inst/doc/fsbrain.Rmd | 4 fsbrain-0.5.0/fsbrain/inst/doc/fsbrain.html | 4 fsbrain-0.5.0/fsbrain/inst/doc/fsbrain_faq.R | 22 fsbrain-0.5.0/fsbrain/inst/doc/fsbrain_faq.Rmd | 48 + fsbrain-0.5.0/fsbrain/inst/doc/fsbrain_faq.html | 211 ++++--- fsbrain-0.5.0/fsbrain/inst/doc/fsbrain_vol.R | 21 fsbrain-0.5.0/fsbrain/inst/doc/fsbrain_vol.Rmd | 58 +- fsbrain-0.5.0/fsbrain/inst/doc/fsbrain_vol.html | 55 + fsbrain-0.5.0/fsbrain/man/collayers.merge.Rd | 2 fsbrain-0.5.0/fsbrain/man/coloredmesh.from.color.Rd | 4 fsbrain-0.5.0/fsbrain/man/coloredmesh.from.label.Rd | 3 fsbrain-0.5.0/fsbrain/man/coloredmesh.from.mask.Rd | 3 fsbrain-0.5.0/fsbrain/man/coloredmesh.from.morph.native.Rd | 3 fsbrain-0.5.0/fsbrain/man/coloredmesh.from.morph.standard.Rd | 3 fsbrain-0.5.0/fsbrain/man/coloredmesh.from.morphdata.Rd | 3 fsbrain-0.5.0/fsbrain/man/colors.are.grayscale.Rd |only fsbrain-0.5.0/fsbrain/man/colors.have.transparency.Rd |only fsbrain-0.5.0/fsbrain/man/constant.pervertexdata.Rd |only fsbrain-0.5.0/fsbrain/man/demo.Rd |only fsbrain-0.5.0/fsbrain/man/demographics.to.qdec.table.dat.Rd |only fsbrain-0.5.0/fsbrain/man/ensure.fs.surface.Rd |only fsbrain-0.5.0/fsbrain/man/ensure.tmesh3d.Rd |only fsbrain-0.5.0/fsbrain/man/export.Rd |only fsbrain-0.5.0/fsbrain/man/extend_neighbors.Rd |only fsbrain-0.5.0/fsbrain/man/extract.volume.3D.Rd |only fsbrain-0.5.0/fsbrain/man/fs.surface.as.adjacencylist.Rd |only fsbrain-0.5.0/fsbrain/man/fs.surface.to.igraph.Rd |only fsbrain-0.5.0/fsbrain/man/fs.surface.to.tmesh3d.Rd |only fsbrain-0.5.0/fsbrain/man/fs.surface.vertex.neighbors.Rd |only fsbrain-0.5.0/fsbrain/man/fsaverage.path.Rd | 7 fsbrain-0.5.0/fsbrain/man/geod.patches.color.overlay.Rd |only fsbrain-0.5.0/fsbrain/man/geod.patches.color.overlay.singlehemi.Rd |only fsbrain-0.5.0/fsbrain/man/geod.patches.pervertexdata.Rd |only fsbrain-0.5.0/fsbrain/man/geod.patches.pervertexdata.singlehemi.Rd |only fsbrain-0.5.0/fsbrain/man/geod.vert.neighborhood.Rd |only fsbrain-0.5.0/fsbrain/man/geodesic.average.distance.Rd |only fsbrain-0.5.0/fsbrain/man/geodesic.ballstats.Rd |only fsbrain-0.5.0/fsbrain/man/geodesic.circles.Rd |only fsbrain-0.5.0/fsbrain/man/geodesic.dists.to.vertex.Rd |only fsbrain-0.5.0/fsbrain/man/geodesic.path.Rd |only fsbrain-0.5.0/fsbrain/man/get.rglstyle.Rd | 2 fsbrain-0.5.0/fsbrain/man/get.rglstyle.edges.Rd | 2 fsbrain-0.5.0/fsbrain/man/get.rglstyle.glass.Rd |only fsbrain-0.5.0/fsbrain/man/get.rglstyle.glass2.Rd |only fsbrain-0.5.0/fsbrain/man/get.rglstyle.semitransparent.Rd | 2 fsbrain-0.5.0/fsbrain/man/group.morph.standard.Rd | 5 fsbrain-0.5.0/fsbrain/man/group.morph.standard.sf.Rd | 2 fsbrain-0.5.0/fsbrain/man/groupmorph.split.hemilist.Rd |only fsbrain-0.5.0/fsbrain/man/handle.rglactions.highlight.points.Rd |only fsbrain-0.5.0/fsbrain/man/hemilist.Rd |only fsbrain-0.5.0/fsbrain/man/hemilist.derive.hemi.Rd | 9 fsbrain-0.5.0/fsbrain/man/hemilist.get.combined.data.Rd | 9 fsbrain-0.5.0/fsbrain/man/hemilist.unwrap.Rd | 9 fsbrain-0.5.0/fsbrain/man/hemilist.wrap.Rd | 9 fsbrain-0.5.0/fsbrain/man/hemlist.ensure.contains.Rd |only fsbrain-0.5.0/fsbrain/man/highlight.points.spheres.Rd |only fsbrain-0.5.0/fsbrain/man/highlight.vertices.on.subject.Rd | 22 fsbrain-0.5.0/fsbrain/man/highlight.vertices.on.subject.spheres.Rd |only fsbrain-0.5.0/fsbrain/man/highlight.vertices.spheres.Rd |only fsbrain-0.5.0/fsbrain/man/is.hemilist.Rd | 9 fsbrain-0.5.0/fsbrain/man/numverts.lh.Rd |only fsbrain-0.5.0/fsbrain/man/numverts.rh.Rd |only fsbrain-0.5.0/fsbrain/man/per.hemi.vertex.indices.Rd |only fsbrain-0.5.0/fsbrain/man/perform.rglactions.Rd | 4 fsbrain-0.5.0/fsbrain/man/pervertexdata.smoothgaussian.Rd |only fsbrain-0.5.0/fsbrain/man/pervertexdata.smoothnn.Rd |only fsbrain-0.5.0/fsbrain/man/pervertexdata.smoothnn.compute.fwhm.Rd |only fsbrain-0.5.0/fsbrain/man/pervertexdata.smoothnn.compute.numiter.Rd |only fsbrain-0.5.0/fsbrain/man/principal.curvatures.Rd | 3 fsbrain-0.5.0/fsbrain/man/rotation.matrix.for.axis.rot.Rd |only fsbrain-0.5.0/fsbrain/man/scale01.Rd |only fsbrain-0.5.0/fsbrain/man/sjd.demo.Rd |only fsbrain-0.5.0/fsbrain/man/subject.descriptor.geodesic.average.distance.Rd |only fsbrain-0.5.0/fsbrain/man/subject.filepath.any.Rd | 13 fsbrain-0.5.0/fsbrain/man/subject.filepath.morph.standard.Rd | 4 fsbrain-0.5.0/fsbrain/man/subject.surface.Rd | 9 fsbrain-0.5.0/fsbrain/man/surf.avg.vertexradius.Rd |only fsbrain-0.5.0/fsbrain/man/surf.metric.properties.Rd |only fsbrain-0.5.0/fsbrain/man/surf.sphere.dist.Rd |only fsbrain-0.5.0/fsbrain/man/surf.sphere.gaussianweights.Rd |only fsbrain-0.5.0/fsbrain/man/surf.sphere.spatialfilter.Rd |only fsbrain-0.5.0/fsbrain/man/surface.curvatures.Rd |only fsbrain-0.5.0/fsbrain/man/tmesh3d.to.fs.surface.Rd |only fsbrain-0.5.0/fsbrain/man/vdata.split.by.hemi.Rd | 2 fsbrain-0.5.0/fsbrain/man/vertex.coords.Rd |only fsbrain-0.5.0/fsbrain/man/vertex.hemis.Rd |only fsbrain-0.5.0/fsbrain/man/vis.color.on.subject.Rd | 10 fsbrain-0.5.0/fsbrain/man/vis.coloredmeshes.Rd | 2 fsbrain-0.5.0/fsbrain/man/vis.data.on.fsaverage.Rd | 10 fsbrain-0.5.0/fsbrain/man/vis.data.on.subject.Rd | 10 fsbrain-0.5.0/fsbrain/man/vis.export.from.coloredmeshes.Rd | 16 fsbrain-0.5.0/fsbrain/man/vis.fs.surface.Rd | 2 fsbrain-0.5.0/fsbrain/man/vis.labeldata.on.subject.Rd | 8 fsbrain-0.5.0/fsbrain/man/vis.mask.on.subject.Rd | 10 fsbrain-0.5.0/fsbrain/man/vis.path.along.verts.Rd | 29 - fsbrain-0.5.0/fsbrain/man/vis.paths.along.verts.Rd |only fsbrain-0.5.0/fsbrain/man/vis.region.values.on.subject.Rd | 10 fsbrain-0.5.0/fsbrain/man/vis.subject.annot.Rd | 7 fsbrain-0.5.0/fsbrain/man/vis.subject.label.Rd | 10 fsbrain-0.5.0/fsbrain/man/vis.subject.morph.native.Rd | 5 fsbrain-0.5.0/fsbrain/man/vis.subject.morph.standard.Rd | 5 fsbrain-0.5.0/fsbrain/man/vis.subject.pre.Rd |only fsbrain-0.5.0/fsbrain/man/vis.symmetric.data.on.subject.Rd | 10 fsbrain-0.5.0/fsbrain/man/vislayout.from.coloredmeshes.Rd | 2 fsbrain-0.5.0/fsbrain/man/vol.merge.Rd | 2 fsbrain-0.5.0/fsbrain/man/vol.overlay.colors.from.activation.Rd | 2 fsbrain-0.5.0/fsbrain/man/vol.overlay.colors.from.colortable.Rd | 2 fsbrain-0.5.0/fsbrain/man/volvis.lb.Rd |only fsbrain-0.5.0/fsbrain/man/volvis.lightbox.Rd | 9 fsbrain-0.5.0/fsbrain/man/write.group.morph.standard.Rd |only fsbrain-0.5.0/fsbrain/man/write.group.morph.standard.mf.Rd |only fsbrain-0.5.0/fsbrain/man/write.group.morph.standard.singlehemi.Rd |only fsbrain-0.5.0/fsbrain/tests/testthat/test-brain_igraph.R |only fsbrain-0.5.0/fsbrain/tests/testthat/test-brainview_magic.R | 2 fsbrain-0.5.0/fsbrain/tests/testthat/test-curvature.R | 25 fsbrain-0.5.0/fsbrain/tests/testthat/test-geodesic.R |only fsbrain-0.5.0/fsbrain/tests/testthat/test-highlight.R |only fsbrain-0.5.0/fsbrain/tests/testthat/test-r_vis_volume.R | 8 fsbrain-0.5.0/fsbrain/tests/testthat/test-rglactions.R | 23 fsbrain-0.5.0/fsbrain/tests/testthat/test-smooth.R |only fsbrain-0.5.0/fsbrain/tests/testthat/test-spatial.R |only fsbrain-0.5.0/fsbrain/tests/testthat/test-u_vis_volume_3d.R | 6 fsbrain-0.5.0/fsbrain/tests/testthat/test-vis.R | 4 fsbrain-0.5.0/fsbrain/tests/testthat/test-w_vis_group.R | 15 fsbrain-0.5.0/fsbrain/vignettes/fsbrain.Rmd | 4 fsbrain-0.5.0/fsbrain/vignettes/fsbrain_aseg_background.jpg |only fsbrain-0.5.0/fsbrain/vignettes/fsbrain_faq.Rmd | 48 + fsbrain-0.5.0/fsbrain/vignettes/fsbrain_lb.jpg |only fsbrain-0.5.0/fsbrain/vignettes/fsbrain_lb_background.jpg |only fsbrain-0.5.0/fsbrain/vignettes/fsbrain_vol.Rmd | 58 +- 159 files changed, 2133 insertions(+), 642 deletions(-)
Title: Composite Indicator Construction and Analysis
Description: A comprehensive high-level package for composite indicator construction and analysis. It is a "development environment"
for composite indicators and scoreboards, which includes utilities for construction (indicator selection, denomination, imputation,
data treatment, normalisation, weighting and aggregation) and analysis (multivariate analysis, correlation plotting, short cuts for
principal component analysis, global sensitivity analysis, and more). A composite indicator is completely encapsulated inside a single
hierarchical list called a "COIN". This allows a fast and efficient work flow, as well as making quick copies, testing methodological variations and making comparisons.
It also includes many plotting options, both statistical (scatter plots, distribution plots) as well as for presenting results (maps,
bar charts, radar charts, and more).
Finally, three Shiny apps are available which enable fast data exploration, results presentation, and checking the effects of
altering weights.
Full documentation is found in the online book at <https://bluefoxr.github.io/COINrDoc/>, as well as the vignette.
Author: William Becker [aut, cre, cph]
(<https://orcid.org/0000-0002-6467-4472>)
Maintainer: William Becker <william.becker@bluefoxdata.eu>
Diff between COINr versions 0.5.4 dated 2021-09-09 and 0.5.5 dated 2021-09-16
DESCRIPTION | 19 ++++++-------- MD5 | 23 +++++++++-------- NAMESPACE | 2 + NEWS.md | 7 +++++ R/coin_aggregate.R | 17 +++++++++++- R/coin_assemble.R | 66 ++++++++++++++++++++++++++++++++++++++++++++++++++ R/coin_audit_tools.R |only R/coin_compare.R | 2 - R/coin_resultstable.R | 2 - README.md | 2 + build/partial.rdb |binary man/aggregate.Rd | 15 +++++++++-- man/removeElements.Rd |only man/replaceDF.Rd |only 14 files changed, 129 insertions(+), 26 deletions(-)
Title: Optimal Design and Statistical Power of Multilevel Randomized
Trials
Description: Calculate the optimal sample allocation that produces the highest statistical power
for experimental studies under a budget constraint,
perform power analyses with and without accommodating cost structures of sampling, and calculate
the relative efficiency between two sample allocations.
The references
for the proposed methods are:
(1) Shen, Z., & Kelcey, B. (2020).
Optimal sample allocation under unequal costs in
cluster-randomized trials.
Journal of Educational and Behavioral Statistics, 45(4): 446-474.
<doi:10.3102/1076998620912418>
(2) Shen, Z., & Kelcey, B. (in press). Optimal sample
allocation in multisite randomized trials. The Journal of Experimental Education.
<doi:10.1080/00220973.2020.1830361>
(3) Shen, Z., & Kelcey, B. (in press). Optimal sampling ratios in three-level
multisite experiments. Journal of Research on Educational Effectiveness.
<doi:10.1080/19345747.2021.1953200>
(4) Champely, S. (2020). pwr: Basic functions for power analysis
(Version 1.3-0) [Software]. Available from
<https://CRAN.R-project.org/package=pwr>.
Author: Zuchao Shen [aut, cre],
Benjamin Kelcey [aut]
Maintainer: Zuchao Shen <zuchao.shen@gmail.com>
Diff between odr versions 1.0.2 dated 2020-03-13 and 1.2.1 dated 2021-09-16
odr-1.0.2/odr/inst/NEWS.Rmd |only odr-1.2.1/odr/DESCRIPTION | 40 +- odr-1.2.1/odr/MD5 | 88 +++--- odr-1.2.1/odr/NAMESPACE | 3 odr-1.2.1/odr/R/gen.design.pars.R |only odr-1.2.1/odr/R/od.1.R | 37 +- odr-1.2.1/odr/R/od.2.221.R |only odr-1.2.1/odr/R/od.2.R | 54 +-- odr-1.2.1/odr/R/od.2m.R | 47 +-- odr-1.2.1/odr/R/od.3.R | 59 +--- odr-1.2.1/odr/R/od.3m.R | 52 +-- odr-1.2.1/odr/R/od.4.R | 69 ++-- odr-1.2.1/odr/R/od.4m.R | 44 +-- odr-1.2.1/odr/R/odr.R | 10 odr-1.2.1/odr/R/power.1.R | 51 +-- odr-1.2.1/odr/R/power.2.221.R |only odr-1.2.1/odr/R/power.2.R | 59 +--- odr-1.2.1/odr/R/power.2m.R | 106 +++---- odr-1.2.1/odr/R/power.3.R | 62 +--- odr-1.2.1/odr/R/power.3m.R | 117 +++----- odr-1.2.1/odr/R/power.4.R | 92 +++--- odr-1.2.1/odr/R/power.4m.R | 105 +++---- odr-1.2.1/odr/R/re.R | 62 ++-- odr-1.2.1/odr/R/rpe.R | 60 +--- odr-1.2.1/odr/build/vignette.rds |binary odr-1.2.1/odr/inst/doc/odr.Rmd | 4 odr-1.2.1/odr/inst/doc/odr.html | 510 ++++++++++++----------------------- odr-1.2.1/odr/man/gen.design.pars.Rd |only odr-1.2.1/odr/man/od.1.Rd | 72 ++-- odr-1.2.1/odr/man/od.2.221.Rd |only odr-1.2.1/odr/man/od.2.Rd | 113 ++++--- odr-1.2.1/odr/man/od.2m.Rd | 108 ++++--- odr-1.2.1/odr/man/od.3.Rd | 137 +++++---- odr-1.2.1/odr/man/od.3m.Rd | 130 +++++--- odr-1.2.1/odr/man/od.4.Rd | 152 ++++++---- odr-1.2.1/odr/man/od.4m.Rd | 152 ++++++---- odr-1.2.1/odr/man/odr-package.Rd | 10 odr-1.2.1/odr/man/power.1.Rd | 93 +++--- odr-1.2.1/odr/man/power.2.221.Rd |only odr-1.2.1/odr/man/power.2.Rd | 121 ++++---- odr-1.2.1/odr/man/power.2m.Rd | 141 +++++---- odr-1.2.1/odr/man/power.3.Rd | 131 +++++--- odr-1.2.1/odr/man/power.3m.Rd | 158 ++++++---- odr-1.2.1/odr/man/power.4.Rd | 136 +++++---- odr-1.2.1/odr/man/power.4m.Rd | 168 ++++++----- odr-1.2.1/odr/man/re.Rd | 62 ++-- odr-1.2.1/odr/man/rpe.Rd | 60 +--- odr-1.2.1/odr/vignettes/odr.Rmd | 4 odr-1.2.1/odr/vignettes/odr.md |only 49 files changed, 1867 insertions(+), 1812 deletions(-)
More information about MazamaSpatialPlots at CRAN
Permanent link
Title: Hierarchical Shrinkage Stan Models for Biomarker Selection
Description: Linear and logistic regression models penalized with hierarchical
shrinkage priors for selection of biomarkers (or more general variable
selection), which can be fitted using Stan (Carpenter et al. (2017)
<doi:10.18637/jss.v076.i01>). It implements the horseshoe and regularized
horseshoe priors (Piironen and Vehtari (2017) <doi:10.1214/17-EJS1337SI>),
as well as the projection predictive selection approach to recover a sparse
set of predictive biomarkers (Piironen, Paasiniemi and Vehtari (2020)
<doi:10.1214/20-EJS1711>).
Author: Marco Colombo [aut, cre] (<https://orcid.org/0000-0001-6672-0623>),
Paul McKeigue [aut] (<https://orcid.org/0000-0002-5217-1034>),
Athina Spiliopoulou [ctb] (<https://orcid.org/0000-0002-5929-6585>)
Maintainer: Marco Colombo <mar.colombo13@gmail.com>
Diff between hsstan versions 0.8 dated 2020-06-29 and 0.8.1 dated 2021-09-16
hsstan-0.8.1/hsstan/DESCRIPTION | 16 +++++++----- hsstan-0.8.1/hsstan/MD5 | 31 ++++++++++++------------ hsstan-0.8.1/hsstan/NEWS.md | 32 ++++++++++++++++++++----- hsstan-0.8.1/hsstan/R/diabetes.R | 4 +-- hsstan-0.8.1/hsstan/R/hsstan-package.R | 16 ++++++++---- hsstan-0.8.1/hsstan/R/misc.R | 26 ++++++++++++++++++++ hsstan-0.8.1/hsstan/R/postestimation.R | 6 ++-- hsstan-0.8.1/hsstan/R/projection.R | 9 ++++++- hsstan-0.8.1/hsstan/R/stan.R | 7 ++++- hsstan-0.8.1/hsstan/R/stanmodels.R | 6 ++-- hsstan-0.8.1/hsstan/README.md | 11 +++++--- hsstan-0.8.1/hsstan/build |only hsstan-0.8.1/hsstan/inst/stan/base0.stan |only hsstan-0.8.1/hsstan/inst/stan/base0_logit.stan |only hsstan-0.8.1/hsstan/man/bayes_R2.hsstan.Rd | 2 - hsstan-0.8.1/hsstan/man/diabetes.Rd | 4 +-- hsstan-0.8.1/hsstan/man/hsstan-package.Rd | 16 ++++++++---- hsstan-0.8/hsstan/inst/stan/base.stan |only hsstan-0.8/hsstan/inst/stan/base_logit.stan |only 19 files changed, 131 insertions(+), 55 deletions(-)
Title: Tools for Reading and Writing ISO/OGC Geographic Metadata
Description: Provides facilities to handle reading and writing of geographic metadata
defined with OGC/ISO 19115, 11119 and 19110 geographic information metadata standards,
and encoded using the ISO 19139 (XML) standard. It includes also a facility to check
the validity of ISO 19139 XML encoded metadata.
Author: Emmanuel Blondel [aut, cre] (<https://orcid.org/0000-0002-5870-5762>)
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geometa versions 0.6-3 dated 2020-08-04 and 0.6-4 dated 2021-09-16
DESCRIPTION | 8 MD5 | 414 ++++++++-------- NAMESPACE | 2 R/GMLTimeInstant.R | 2 R/GMLTimePeriod.R | 4 R/IANAMimeTypes.R |only R/INSPIREMetadataValidator.R | 4 R/ISOAbstractObject.R | 20 R/ISOConformanceResult.R | 2 R/ISOCoverageDescription.R | 2 R/ISODataQuality.R | 2 R/ISODataQualityCompleteness.R | 4 R/ISODataQualityLogicalConsistency.R | 8 R/ISODataQualityPositionalAccuracy.R | 6 R/ISODataQualityTemporalAccuracy.R | 6 R/ISODataQualityThematicAccuracy.R | 6 R/ISODigitalTransferOptions.R | 34 + R/ISODimension.R | 2 R/ISOFormat.R | 26 - R/ISOImageryMetadata.R | 2 R/ISOMetadata.R | 2 R/ISOMetadataNamespace.R | 2 R/ISOMimeFileType.R | 38 + R/geometa.R | 4 R/profile.R | 4 README.md | 4 inst/extdata/schemas/smil |only inst/extdata/schemas/xlink |only man/INSPIREMetadataValidator.Rd | 2 man/ISOAbsoluteExternalPositionalAccuracy.Rd | 2 man/ISOAccuracyOfATimeMeasurement.Rd | 2 man/ISOCompletenessCommission.Rd | 2 man/ISOCompletenessOmission.Rd | 2 man/ISOConceptualConsistency.Rd | 2 man/ISOConformanceResult.Rd | 2 man/ISODataQuality.Rd | 2 man/ISODigitalTransferOptions.Rd | 9 man/ISODomainConsistency.Rd | 2 man/ISOFormatConsistency.Rd | 2 man/ISOGriddedDataPositionalAccuracy.Rd | 2 man/ISOImageryMetadata.Rd | 2 man/ISOMetadata.Rd | 2 man/ISOMimeFileType.Rd | 6 man/ISONonQuantitativeAttributeAccuracy.Rd | 2 man/ISOQuantitativeAttributeAccuracy.Rd | 2 man/ISORelativeInternalPositionalAccuracy.Rd | 2 man/ISOTemporalConsistency.Rd | 2 man/ISOTemporalValidity.Rd | 2 man/ISOThematicClassificationCorrectness.Rd | 2 man/ISOTopologicalConsistency.Rd | 2 man/geometa.Rd | 4 man/getIANAMimeTypes.Rd |only man/setIANAMimeTypes.Rd |only tests/testthat/test_GMLAbstractCRS.R | 1 tests/testthat/test_GMLAbstractFeature.R | 1 tests/testthat/test_GMLAbstractGeneralDerivedCRS.R | 1 tests/testthat/test_GMLAbstractGeometricAggregate.R | 3 tests/testthat/test_GMLAbstractGeometricPrimitive.R | 3 tests/testthat/test_GMLAbstractRing.R | 1 tests/testthat/test_GMLAbstractSingleCRS.R | 1 tests/testthat/test_GMLCompoundCRS.R | 1 tests/testthat/test_GMLConversion.R | 1 tests/testthat/test_GMLCoordinateSystem.R | 13 tests/testthat/test_GMLCoordinateSystemAxis.R | 1 tests/testthat/test_GMLCoverages.R | 8 tests/testthat/test_GMLDefinition.R | 1 tests/testthat/test_GMLDerivedCRS.R | 1 tests/testthat/test_GMLElement.R | 1 tests/testthat/test_GMLEnvelope.R | 2 tests/testthat/test_GMLEnvelopeWithTimePeriod.R | 1 tests/testthat/test_GMLGeneralGridAxis.R | 1 tests/testthat/test_GMLGrid.R | 2 tests/testthat/test_GMLGridFunction.R | 1 tests/testthat/test_GMLOperationMethod.R | 1 tests/testthat/test_GMLOperationParameter.R | 3 tests/testthat/test_GMLParameterValue.R | 5 tests/testthat/test_GMLParameterValueGroup.R | 1 tests/testthat/test_GMLProjectedCRS.R | 1 tests/testthat/test_GMLRectifiedGrid.R | 1 tests/testthat/test_GMLReferenceableGrid.R | 2 tests/testthat/test_GMLTimeInstant.R | 3 tests/testthat/test_GMLTimePeriod.R | 4 tests/testthat/test_GMLUnitDefinition.R | 4 tests/testthat/test_INSPIREMetadataValidator.R | 5 tests/testthat/test_ISOAddress.R | 2 tests/testthat/test_ISOAggregateInformation.R | 1 tests/testthat/test_ISOAnchor.R | 1 tests/testthat/test_ISOApplicationSchemaInformation.R | 1 tests/testthat/test_ISOAssociationRole.R | 1 tests/testthat/test_ISOBand.R | 1 tests/testthat/test_ISOBinary.R | 1 tests/testthat/test_ISOBinding.R | 2 tests/testthat/test_ISOBoundAssociationRole.R | 2 tests/testthat/test_ISOBoundFeatureAttribute.R | 2 tests/testthat/test_ISOBoundingPolygon.R | 1 tests/testthat/test_ISOBrowseGraphic.R | 2 tests/testthat/test_ISOCarrierOfCharacteristics.R | 1 tests/testthat/test_ISOCitation.R | 2 tests/testthat/test_ISOCitationSeries.R | 2 tests/testthat/test_ISOConformanceResult.R | 2 tests/testthat/test_ISOConstraint.R | 2 tests/testthat/test_ISOConstraints.R | 2 tests/testthat/test_ISOContact.R | 2 tests/testthat/test_ISOCoupledResource.R | 2 tests/testthat/test_ISOCoverageDescription.R | 1 tests/testthat/test_ISODataFile.R | 1 tests/testthat/test_ISODataIdentification.R | 2 tests/testthat/test_ISODataQuality.R | 4 tests/testthat/test_ISODataQualityAbstractElement.R | 4 tests/testthat/test_ISODataQualityCompleteness.R | 11 tests/testthat/test_ISODataQualityLogicalConsistency.R | 15 tests/testthat/test_ISODataQualityPositionalAccuracy.R | 12 tests/testthat/test_ISODataQualityTemporalAccuracy.R | 12 tests/testthat/test_ISODataQualityThematicAccuracy.R | 12 tests/testthat/test_ISODefinitionReference.R | 3 tests/testthat/test_ISODefinitionSource.R | 3 tests/testthat/test_ISODigitalTransferOptions.R | 2 tests/testthat/test_ISODimension.R | 1 tests/testthat/test_ISODistribution.R | 1 tests/testthat/test_ISODistributor.R | 2 tests/testthat/test_ISOExtendedElementInformation.R | 2 tests/testthat/test_ISOExtent.R | 1 tests/testthat/test_ISOFeatureAssociation.R | 1 tests/testthat/test_ISOFeatureAttribute.R | 2 tests/testthat/test_ISOFeatureCatalogue.R | 4 tests/testthat/test_ISOFeatureCatalogueDescription.R | 1 tests/testthat/test_ISOFeatureOperation.R | 2 tests/testthat/test_ISOFeatureType.R | 2 tests/testthat/test_ISOFormat.R | 2 tests/testthat/test_ISOFreeText.R | 1 tests/testthat/test_ISOGeographicBoundingBox.R | 1 tests/testthat/test_ISOGeographicDescription.R | 1 tests/testthat/test_ISOGeometricObjects.R | 1 tests/testthat/test_ISOGeorectified.R | 1 tests/testthat/test_ISOGeoreferenceable.R | 3 tests/testthat/test_ISOGridSpatialRepresentation.R | 1 tests/testthat/test_ISOIdentifier.R | 1 tests/testthat/test_ISOImageDescription.R | 1 tests/testthat/test_ISOImageryAlgorithm.R | 1 tests/testthat/test_ISOImageryBand.R | 1 tests/testthat/test_ISOImageryCoverageDescription.R | 1 tests/testthat/test_ISOImageryEnvironmentalRecord.R | 1 tests/testthat/test_ISOImageryEvent.R | 1 tests/testthat/test_ISOImageryGCP.R | 1 tests/testthat/test_ISOImageryGCPCollection.R | 1 tests/testthat/test_ISOImageryGeorectified.R | 1 tests/testthat/test_ISOImageryGeoreferenceable.R | 3 tests/testthat/test_ISOImageryImageDescription.R | 1 tests/testthat/test_ISOImageryInstrument.R | 1 tests/testthat/test_ISOImageryMetadata.R | 6 tests/testthat/test_ISOImageryNominalResolution.R | 1 tests/testthat/test_ISOImageryObjective.R | 1 tests/testthat/test_ISOImageryPlan.R | 1 tests/testthat/test_ISOImageryPlatform.R | 1 tests/testthat/test_ISOImageryPlatformPass.R | 1 tests/testthat/test_ISOImageryProcessStep.R | 1 tests/testthat/test_ISOImageryProcessing.R | 1 tests/testthat/test_ISOImageryRangeElementDescription.R | 2 tests/testthat/test_ISOImageryRequestedDate.R | 1 tests/testthat/test_ISOImageryRequirement.R | 1 tests/testthat/test_ISOImagerySource.R | 1 tests/testthat/test_ISOImageryUsability.R | 4 tests/testthat/test_ISOInheritanceRelation.R | 1 tests/testthat/test_ISOKeywords.R | 12 tests/testthat/test_ISOLegalConstraints.R | 2 tests/testthat/test_ISOLineage.R | 4 tests/testthat/test_ISOListedValue.R | 2 tests/testthat/test_ISOLocalName.R | 1 tests/testthat/test_ISOLocaleContainer.R | 1 tests/testthat/test_ISOLocalisedCharacterString.R | 6 tests/testthat/test_ISOMaintenanceInformation.R | 1 tests/testthat/test_ISOMeasure.R | 5 tests/testthat/test_ISOMedium.R | 2 tests/testthat/test_ISOMemberName.R | 2 tests/testthat/test_ISOMetaIdentifier.R | 1 tests/testthat/test_ISOMetadata.R | 20 tests/testthat/test_ISOMetadataExtensionInformation.R | 2 tests/testthat/test_ISOMimeFileType.R | 19 tests/testthat/test_ISOMultiplicity.R | 1 tests/testthat/test_ISOMultiplicityRange.R | 1 tests/testthat/test_ISOOnlineResource.R | 2 tests/testthat/test_ISOOperationMetadata.R | 1 tests/testthat/test_ISOParameter.R | 2 tests/testthat/test_ISOPortrayalCatalogueReference.R | 2 tests/testthat/test_ISOProcessStep.R | 6 tests/testthat/test_ISOPropertyType.R | 2 tests/testthat/test_ISOQuantitativeResult.R | 1 tests/testthat/test_ISORangeDimension.R | 2 tests/testthat/test_ISORecord.R | 1 tests/testthat/test_ISORecordType.R | 1 tests/testthat/test_ISOReferenceIdentifier.R | 1 tests/testthat/test_ISOReferenceSystem.R | 1 tests/testthat/test_ISORepresentativeFraction.R | 1 tests/testthat/test_ISOResolution.R | 1 tests/testthat/test_ISOResponsibleParty.R | 2 tests/testthat/test_ISOScope.R | 1 tests/testthat/test_ISOSecurityConstraints.R | 2 tests/testthat/test_ISOServiceIdentification.R | 28 - tests/testthat/test_ISOSource.R | 4 tests/testthat/test_ISOSpatialTemporalExtent.R | 1 tests/testthat/test_ISOStandardOrderProcess.R | 2 tests/testthat/test_ISOTelephone.R | 2 tests/testthat/test_ISOTemporalExtent.R | 2 tests/testthat/test_ISOTypeName.R | 2 tests/testthat/test_ISOURL.R | 1 tests/testthat/test_ISOUnlimitedInteger.R | 2 tests/testthat/test_ISOUsage.R | 1 tests/testthat/test_ISOVectorSpatialRepresentation.R | 1 tests/testthat/test_ISOVerticalExtent.R | 1 tests/testthat/test_geometa_mapping.R | 7 210 files changed, 481 insertions(+), 608 deletions(-)
Title: Tools for Reading, Writing, Viewing and Manipulating CIFTI Files
Description: CIFTI files contain brain imaging data in "grayordinates," which
represent the gray matter as cortical surface vertices (left and right) and
subcortical voxels (cerebellum, basal ganglia, and other deep gray matter).
'ciftiTools' provides a unified environment for reading, writing,
visualizing and manipulating CIFTI-format data. It supports the "dscalar,"
"dlabel," and "dtseries" intents. Grayordinate data is read in as a "xifti"
object, which is structured for convenient access to the data and metadata,
and includes support for surface geometry files to enable
spatially-dependent functionality such as static or interactive
visualizations and smoothing.
Author: Amanda Mejia [aut, cre],
Damon Pham [aut] (<https://orcid.org/0000-0001-7563-4727>),
John Muschelli [ctb] (<https://orcid.org/0000-0001-6469-1750>)
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>
Diff between ciftiTools versions 0.4.3 dated 2021-08-19 and 0.6.1 dated 2021-09-16
ciftiTools-0.4.3/ciftiTools/R/concat_xifti.R |only ciftiTools-0.4.3/ciftiTools/man/view_xifti_surface.cleg.Rd |only ciftiTools-0.6.1/ciftiTools/DESCRIPTION | 8 ciftiTools-0.6.1/ciftiTools/MD5 | 115 - ciftiTools-0.6.1/ciftiTools/NAMESPACE | 4 ciftiTools-0.6.1/ciftiTools/NEWS.md | 12 ciftiTools-0.6.1/ciftiTools/R/ciftiTools-package.R | 33 ciftiTools-0.6.1/ciftiTools/R/combine_xifti.R | 2 ciftiTools-0.6.1/ciftiTools/R/is.xifti.R | 2 ciftiTools-0.6.1/ciftiTools/R/make_xifti.R | 8 ciftiTools-0.6.1/ciftiTools/R/make_xifti_components.R | 17 ciftiTools-0.6.1/ciftiTools/R/merge_xifti.R |only ciftiTools-0.6.1/ciftiTools/R/newdata_xifti.R | 4 ciftiTools-0.6.1/ciftiTools/R/parc_borders.R | 11 ciftiTools-0.6.1/ciftiTools/R/read_cifti.R | 10 ciftiTools-0.6.1/ciftiTools/R/read_cifti_flat.R | 9 ciftiTools-0.6.1/ciftiTools/R/read_cifti_separate.R | 9 ciftiTools-0.6.1/ciftiTools/R/read_xifti2.R | 8 ciftiTools-0.6.1/ciftiTools/R/resample_cifti_components.R | 2 ciftiTools-0.6.1/ciftiTools/R/rox_args_docs.R | 14 ciftiTools-0.6.1/ciftiTools/R/transform_xifti.R | 4 ciftiTools-0.6.1/ciftiTools/R/utils_color.R | 2 ciftiTools-0.6.1/ciftiTools/R/utils_surf.R | 4 ciftiTools-0.6.1/ciftiTools/R/utils_xifti.R | 188 +- ciftiTools-0.6.1/ciftiTools/R/view_xifti.R | 335 +++ ciftiTools-0.6.1/ciftiTools/R/view_xifti_surface.R | 194 -- ciftiTools-0.6.1/ciftiTools/R/view_xifti_volume.R | 903 ++++++++-- ciftiTools-0.6.1/ciftiTools/R/wb_cmd.R | 10 ciftiTools-0.6.1/ciftiTools/R/write_cifti.R | 2 ciftiTools-0.6.1/ciftiTools/README.md | 2 ciftiTools-0.6.1/ciftiTools/inst/extdata/MNI152_T1_2mm_crop.nii.gz |only ciftiTools-0.6.1/ciftiTools/man/as.xifti.Rd | 4 ciftiTools-0.6.1/ciftiTools/man/ciftiTools.Rd | 33 ciftiTools-0.6.1/ciftiTools/man/combine_xifti.Rd | 74 ciftiTools-0.6.1/ciftiTools/man/info_cifti.Rd | 2 ciftiTools-0.6.1/ciftiTools/man/is.xifti_data.Rd | 2 ciftiTools-0.6.1/ciftiTools/man/load_parc.Rd | 104 - ciftiTools-0.6.1/ciftiTools/man/load_surf.Rd | 92 - ciftiTools-0.6.1/ciftiTools/man/make_cortex.Rd | 17 ciftiTools-0.6.1/ciftiTools/man/make_xifti.Rd | 8 ciftiTools-0.6.1/ciftiTools/man/merge_xifti.Rd | 68 ciftiTools-0.6.1/ciftiTools/man/newdata_xifti.Rd | 2 ciftiTools-0.6.1/ciftiTools/man/read_cifti.Rd | 12 ciftiTools-0.6.1/ciftiTools/man/read_cifti_flat.Rd | 9 ciftiTools-0.6.1/ciftiTools/man/read_surf.Rd | 106 - ciftiTools-0.6.1/ciftiTools/man/read_xifti2.Rd | 218 +- ciftiTools-0.6.1/ciftiTools/man/resample_cifti_components.Rd | 2 ciftiTools-0.6.1/ciftiTools/man/roxygen/meta.R | 4 ciftiTools-0.6.1/ciftiTools/man/separate_cifti.Rd | 2 ciftiTools-0.6.1/ciftiTools/man/surface_plot_Params.Rd | 13 ciftiTools-0.6.1/ciftiTools/man/view_surf.Rd | 16 ciftiTools-0.6.1/ciftiTools/man/view_xifti.Rd | 19 ciftiTools-0.6.1/ciftiTools/man/view_xifti.cleg.Rd |only ciftiTools-0.6.1/ciftiTools/man/view_xifti.title.Rd |only ciftiTools-0.6.1/ciftiTools/man/view_xifti_surface.Rd | 37 ciftiTools-0.6.1/ciftiTools/man/view_xifti_volume.Rd | 284 ++- ciftiTools-0.6.1/ciftiTools/man/write_cifti.Rd | 2 ciftiTools-0.6.1/ciftiTools/man/write_cifti_components.Rd | 2 ciftiTools-0.6.1/ciftiTools/man/write_metric_gifti.Rd | 2 ciftiTools-0.6.1/ciftiTools/man/write_subcort_nifti.Rd | 2 ciftiTools-0.6.1/ciftiTools/man/write_surf_gifti.Rd | 2 ciftiTools-0.6.1/ciftiTools/tests/testthat/test-plotting_sub.R |only 62 files changed, 2175 insertions(+), 875 deletions(-)
Title: Class-Agnostic Time Series
Description: Time series toolkit with identical behavior for all
time series classes: 'ts','xts', 'data.frame', 'data.table', 'tibble', 'zoo',
'timeSeries', 'tsibble', 'tis' or 'irts'. Also converts reliably between these classes.
Author: Christoph Sax [aut, cre] (<https://orcid.org/0000-0002-7192-7044>)
Maintainer: Christoph Sax <christoph.sax@gmail.com>
Diff between tsbox versions 0.3.0 dated 2021-07-29 and 0.3.1 dated 2021-09-16
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 7 +++++++ R/ts_first_of_period.R | 2 ++ R/ts_frequency.R | 5 ++--- build/vignette.rds |binary man/ts_first_of_period.Rd | 2 ++ man/ts_frequency.Rd | 6 ++---- tests/testthat/test-ts_frequency.R | 2 ++ 9 files changed, 29 insertions(+), 19 deletions(-)
Title: Empirical Dynamic Modeling ('EDM')
Description: An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Author: Joseph Park [aut, cre] (<https://orcid.org/0000-0001-5411-1409>),
Cameron Smith [aut] (<https://orcid.org/0000-0003-0020-5607>),
George Sugihara [aut, ccp] (<https://orcid.org/0000-0002-2863-6946>),
Ethan Deyle [aut] (<https://orcid.org/0000-0001-8704-8434>),
Erik Saberski [ctb] (<https://orcid.org/0000-0002-6475-6187>),
Hao Ye [ctb] (<https://orcid.org/0000-0002-8630-1458>),
The Regents of the University of California [cph]
Maintainer: Joseph Park <JosephPark@IEEE.org>
Diff between rEDM versions 1.9.1 dated 2021-08-08 and 1.9.2 dated 2021-09-16
DESCRIPTION | 12 ++--- MD5 | 14 +++--- NEWS | 4 - build/vignette.rds |binary src/cppEDM/src/CCM.cc | 37 ++++++++++------ src/cppEDM/src/Parameter.cc | 2 vignettes/ParameterTable.csv | 30 +++++++------ vignettes/rEDM-tutorial.html | 94 +++++++++++++++++++------------------------ 8 files changed, 98 insertions(+), 95 deletions(-)
Title: Interface to Open Collaboration Services (OCS) REST API
Description: Provides an Interface to Open Collaboration Services 'OCS' (<https://www.open-collaboration-services.org/>) REST API.
Author: Emmanuel Blondel [aut, cre] (<https://orcid.org/0000-0002-5870-5762>)
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between ocs4R versions 0.2 dated 2021-07-05 and 0.2-1 dated 2021-09-16
DESCRIPTION | 8 +-- MD5 | 30 +++++++------- NEWS.md | 15 ++++++- R/ocs4R.R | 4 - R/ocsApiSharingManager.R | 23 +++++++--- R/ocsApiUserProvisioningManager.R | 59 ++++++++++++++++++---------- R/ocsApiWebdavManager.R | 29 +++++++++---- R/ocsManager.R | 49 +++++++++++++++++------ R/ocsRequest.R | 4 - README.md | 4 - man/ocs4R.Rd | 4 - man/ocsApiSharingManager.Rd | 12 +++-- man/ocsApiUserProvisioningManager.Rd | 12 +++-- man/ocsApiWebdavManager.Rd | 12 +++-- man/ocsManager.Rd | 13 ++++-- tests/testthat/test_api_user_provisioning.R | 2 16 files changed, 184 insertions(+), 96 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-15 1.2.1
2021-09-02 1.2.0
2021-03-31 1.1.0
2021-03-01 1.0.0
Title: Mobile Ready 'shiny' Apps with Standalone Capabilities
Description: Develop outstanding 'shiny' apps for 'iOS', 'Android', desktop as well as beautiful 'shiny' gadgets.
'shinyMobile' is built on top of the latest 'Framework7' template <https://framework7.io>.
Discover 14 new input widgets (sliders, vertical sliders, stepper,
grouped action buttons, toggles, picker, smart select, ...), 2 themes (light and dark),
12 new widgets (expandable cards, badges, chips, timelines, gauges, progress bars, ...)
combined with the power of server-side notifications such as alerts, modals, toasts,
action sheets, sheets (and more) as well as 3 layouts (single, tabs and split).
Author: David Granjon [aut, cre],
Victor Perrier [aut],
John Coene [ctb],
Isabelle Rudolf [aut],
Dieter Menne [ctb],
Marvelapp [ctb, cph] (device.css wrappers),
Vladimir Kharlampidi [ctb, cph] (Framework7 HTML template)
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between shinyMobile versions 0.9.0 dated 2021-07-22 and 0.9.1 dated 2021-09-16
shinyMobile-0.9.0/shinyMobile/inst/shinyMobile-0.9.0 |only shinyMobile-0.9.1/shinyMobile/DESCRIPTION | 8 +- shinyMobile-0.9.1/shinyMobile/MD5 | 36 +++++----- shinyMobile-0.9.1/shinyMobile/NEWS.md | 4 + shinyMobile-0.9.1/shinyMobile/R/f7Preloader.R | 23 +++--- shinyMobile-0.9.1/shinyMobile/R/manifest.R | 2 shinyMobile-0.9.1/shinyMobile/R/pwa-dependencies.R | 2 shinyMobile-0.9.1/shinyMobile/R/shinyMobile-dependencies.R | 2 shinyMobile-0.9.1/shinyMobile/R/typography.R | 8 +- shinyMobile-0.9.1/shinyMobile/inst/doc/Gadgets.html | 4 - shinyMobile-0.9.1/shinyMobile/inst/doc/Single-Layout.html | 4 - shinyMobile-0.9.1/shinyMobile/inst/doc/Split-Layout.html | 4 - shinyMobile-0.9.1/shinyMobile/inst/doc/Tabs-Layout.html | 4 - shinyMobile-0.9.1/shinyMobile/inst/doc/shinyMobile.html | 4 - shinyMobile-0.9.1/shinyMobile/inst/examples/gallery/app.R | 6 - shinyMobile-0.9.1/shinyMobile/inst/shinyMobile-0.9.1 |only shinyMobile-0.9.1/shinyMobile/tests/testthat/test-preview_mobile.R | 2 17 files changed, 59 insertions(+), 54 deletions(-)
Title: Scalable Robust Estimators with High Breakdown Point
Description: Robust Location and Scatter Estimation and Robust
Multivariate Analysis with High Breakdown Point:
principal component analysis (Filzmoser and Todorov (2013), <doi:10.1016/j.ins.2012.10.017>),
linear and quadratic discriminant analysis (Todorov and Pires (2007)),
multivariate tests (Todorov and Filzmoser (2010) <doi:10.1016/j.csda.2009.08.015>),
outlier detection (Todorov et al. (2010) <doi:10.1007/s11634-010-0075-2>).
See also Todorov and Filzmoser (2009) <ISBN-13:978-3838108148>,
Todorov and Filzmoser (2010) <doi:10.18637/jss.v032.i03> and
Boudt et al. (2019) <doi:10.1007/s11222-019-09869-x>.
Author: Valentin Todorov [aut, cre] (<https://orcid.org/0000-0003-4215-0245>)
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between rrcov versions 1.5-5 dated 2020-08-03 and 1.6-0 dated 2021-09-16
ChangeLog | 14 + DESCRIPTION | 13 - MD5 | 181 ++++++++++++----------- NAMESPACE | 2 R/AllClasses.R | 4 R/Pca.R | 74 ++++++--- R/PcaHubert.R | 329 +++++++++++++++++++++++++++--------------- R/adjoutlyingness.R |only R/datadoc.R |only R/detmrcd.R | 2 R/plot-utils.R | 10 - README.md |only build/vignette.rds |binary data/machines.rda |only data/wolves.rda |only inst/Citation | 6 inst/NEWS.Rd | 13 + inst/doc/rrcov.pdf |binary man/Cov-class.Rd | 2 man/CovClassic-class.Rd | 2 man/CovClassic.Rd | 2 man/CovControl-class.Rd | 2 man/CovControlMMest-class.Rd | 2 man/CovControlMMest.Rd | 2 man/CovControlMcd-class.Rd | 2 man/CovControlMcd.Rd | 2 man/CovControlMest-class.Rd | 2 man/CovControlMest.Rd | 2 man/CovControlMrcd-class.Rd | 2 man/CovControlMrcd.Rd | 2 man/CovControlMve-class.Rd | 2 man/CovControlMve.Rd | 2 man/CovControlOgk-class.Rd | 2 man/CovControlOgk.Rd | 2 man/CovControlSde-class.Rd | 2 man/CovControlSde.Rd | 2 man/CovControlSest-class.Rd | 2 man/CovControlSest.Rd | 2 man/CovMMest-class.Rd | 2 man/CovMMest.Rd | 2 man/CovMcd-class.Rd | 2 man/CovMcd.Rd | 2 man/CovMest-class.Rd | 2 man/CovMest.Rd | 2 man/CovMrcd-class.Rd | 2 man/CovMrcd.Rd | 2 man/CovMve-class.Rd | 2 man/CovMve.Rd | 2 man/CovOgk-class.Rd | 2 man/CovOgk.Rd | 2 man/CovRobust-class.Rd | 2 man/CovRobust.Rd | 2 man/CovSde-class.Rd | 2 man/CovSde.Rd | 2 man/CovSest-class.Rd | 2 man/CovSest.Rd | 2 man/Lda-class.Rd | 2 man/LdaClassic-class.Rd | 2 man/LdaClassic.Rd | 2 man/LdaPP-class.Rd | 2 man/LdaRobust-class.Rd | 2 man/Linda-class.Rd | 2 man/Linda.Rd | 3 man/Pca-class.Rd | 2 man/PcaClassic-class.Rd | 2 man/PcaClassic.Rd | 2 man/PcaCov-class.Rd | 2 man/PcaCov.Rd | 2 man/PcaGrid-class.Rd | 2 man/PcaGrid.Rd | 2 man/PcaHubert-class.Rd | 6 man/PcaHubert.Rd | 19 +- man/PcaLocantore-class.Rd | 2 man/PcaLocantore.Rd | 4 man/PcaProj-class.Rd | 2 man/PcaProj.Rd | 2 man/PcaRobust-class.Rd | 2 man/PredictLda-class.Rd | 2 man/PredictQda-class.Rd | 2 man/Qda-class.Rd | 2 man/QdaClassic-class.Rd | 2 man/QdaClassic.Rd | 2 man/QdaCov-class.Rd | 2 man/QdaCov.Rd | 2 man/QdaRobust-class.Rd | 2 man/SummaryCov-class.Rd | 2 man/SummaryCovRobust-class.Rd | 2 man/SummaryLda-class.Rd | 2 man/SummaryPca-class.Rd | 2 man/SummaryQda-class.Rd | 2 man/covMest-deprecated.Rd | 2 man/machines.Rd |only man/pca.distances.Rd | 2 man/wolves.Rd |only vignettes/mybiblio.bib | 2 95 files changed, 496 insertions(+), 326 deletions(-)
Title: Adding Progress Bar to '*apply' Functions
Description: A lightweight package that adds
progress bar to vectorized R functions
('*apply'). The implementation can easily be added
to functions where showing the progress is
useful (e.g. bootstrap). The type and style of the
progress bar (with percentages or remaining time)
can be set through options.
Supports several parallel processing backends.
Author: Peter Solymos [aut, cre], Zygmunt Zawadzki [aut]
Maintainer: Peter Solymos <solymos@ualberta.ca>
Diff between pbapply versions 1.4-3 dated 2020-08-18 and 1.5-0 dated 2021-09-16
DESCRIPTION | 9 +++++---- MD5 | 27 ++++++++++++++------------- NAMESPACE | 2 +- R/closepb.R | 11 +++++++++-- R/doshiny.R |only R/pbapply.R | 33 ++++++++++++++++++--------------- R/pbtypes.R | 2 +- R/unix/getpb.R | 2 ++ R/unix/setpb.R | 4 ++++ R/unix/startpb.R | 2 ++ R/windows/getpb.R | 2 ++ R/windows/setpb.R | 4 ++++ R/windows/startpb.R | 2 ++ man/pbapply.Rd | 11 +++++++++-- man/pboptions.Rd | 7 +++++++ 15 files changed, 80 insertions(+), 38 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson <mark.stevenson1@unimelb.edu.au> and Evan Sergeant <evansergeant@gmail.com> with contributions from Telmo Nunes, Cord Heuer, Jonathon Marshall, Javier Sanchez, Ron Thornton, Jeno Reiczigel, Jim Robison-Cox, Paola Sebastiani, Peter Solymos, Kazuki Yoshida, Geoff Jones, Sarah Pirikahu, Simon Firestone, Ryan Kyle, Johann Popp, Mathew Jay, Charles Reynard, Allison Cheung, Nagendra Singanallur and Aniko Szabo.
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.33 dated 2021-07-30 and 2.0.35 dated 2021-09-16
DESCRIPTION | 10 +- MD5 | 70 +++++++++-------- NAMESPACE | 1 NEWS | 17 ++++ R/epi.ssdxsesp.R |only R/epi.ssequb.R | 29 ++++--- R/epi.ssequc.R | 54 +++++++------ R/epi.ssninfb.R | 119 +++++++++++++++-------------- R/epi.ssninfc.R | 84 ++++++++++++-------- R/epi.sssupb.R | 83 ++++++++++---------- R/epi.sssupc.R | 32 ++++--- inst/doc/epiR_RSurveillance.html | 4 inst/doc/epiR_descriptive.html | 56 ++++++------- inst/doc/epiR_measures_of_association.Rmd | 2 inst/doc/epiR_measures_of_association.html | 22 ++--- inst/doc/epiR_sample_size.R | 2 inst/doc/epiR_sample_size.Rmd | 6 - inst/doc/epiR_sample_size.html | 16 +-- inst/doc/epiR_surveillance.Rmd | 4 inst/doc/epiR_surveillance.html | 20 ++-- man/epi.2by2.Rd | 64 +++++++++++---- man/epi.about.Rd | 5 - man/epi.ssdxsesp.Rd |only man/epi.ssequb.Rd | 53 ++++++++---- man/epi.ssequc.Rd | 37 ++++++--- man/epi.ssninfb.Rd | 59 +++++++++++--- man/epi.ssninfc.Rd | 27 ++++-- man/epi.sssupb.Rd | 19 ++-- man/epi.sssupc.Rd | 20 ++-- vignettes/epiR-manual.pdf |only vignettes/epiR_descriptive.bib | 62 +++------------ vignettes/epiR_measures_of_association.Rmd | 2 vignettes/epiR_measures_of_association.bib | 102 +++++++++++------------- vignettes/epiR_sample_size.Rmd | 6 - vignettes/epiR_sample_size.bib | 35 ++------ vignettes/epiR_surveillance.Rmd | 4 vignettes/epiR_surveillance.bib | 76 +++--------------- vignettes/index.html |only 38 files changed, 634 insertions(+), 568 deletions(-)
Title: A 'Bootstrap 4' Version of 'shinydashboard'
Description: Make 'Bootstrap 4' Shiny dashboards. Use the full power
of 'AdminLTE3', a dashboard template built on top of 'Bootstrap 4'
<https://github.com/ColorlibHQ/AdminLTE>.
Author: David Granjon [aut, cre],
RinteRface [cph],
Almasaeed Studio [ctb, cph] (AdminLTE3 theme for Bootstrap 4),
Winston Chang [ctb, cph] (Utils functions from shinydashboard),
Thomas Park [ctb, cph] (Bootswatch Sketchy theme CSS)
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between bs4Dash versions 2.0.2 dated 2021-07-23 and 2.0.3 dated 2021-09-16
bs4Dash-2.0.2/bs4Dash/inst/bs4Dash-2.0.2 |only bs4Dash-2.0.3/bs4Dash/DESCRIPTION | 12 ++-- bs4Dash-2.0.3/bs4Dash/MD5 | 58 ++++++++++----------- bs4Dash-2.0.3/bs4Dash/NEWS.md | 7 ++ bs4Dash-2.0.3/bs4Dash/R/auto-color.R | 5 - bs4Dash-2.0.3/bs4Dash/R/cards.R | 8 +- bs4Dash-2.0.3/bs4Dash/R/dashboardControlbar.R | 9 ++- bs4Dash-2.0.3/bs4Dash/R/dashboardHeader.R | 8 ++ bs4Dash-2.0.3/bs4Dash/R/dashboardPage.R | 6 +- bs4Dash-2.0.3/bs4Dash/R/dashboardSidebar.R | 5 + bs4Dash-2.0.3/bs4Dash/R/inputs.R | 2 bs4Dash-2.0.3/bs4Dash/R/render-functions.R | 8 ++ bs4Dash-2.0.3/bs4Dash/R/tabs.R | 4 - bs4Dash-2.0.3/bs4Dash/R/utils.R | 40 ++------------ bs4Dash-2.0.3/bs4Dash/build/bs4Dash.pdf |binary bs4Dash-2.0.3/bs4Dash/inst/bs4Dash-2.0.3 |only bs4Dash-2.0.3/bs4Dash/inst/doc/bs4Dash.html | 11 +++ bs4Dash-2.0.3/bs4Dash/inst/doc/css-preloader.Rmd | 2 bs4Dash-2.0.3/bs4Dash/inst/doc/css-preloader.html | 15 ++++- bs4Dash-2.0.3/bs4Dash/inst/doc/extra-elements.html | 20 ++++++- bs4Dash-2.0.3/bs4Dash/inst/doc/improved-boxes.html | 41 ++++++++++++++ bs4Dash-2.0.3/bs4Dash/inst/doc/more-skins.html | 20 ++++++- bs4Dash-2.0.3/bs4Dash/inst/doc/step-by-step.html | 4 - bs4Dash-2.0.3/bs4Dash/man/dashboardControlbar.Rd | 2 bs4Dash-2.0.3/bs4Dash/man/dashboardPage.Rd | 2 bs4Dash-2.0.3/bs4Dash/man/dashboardSidebar.Rd | 8 ++ bs4Dash-2.0.3/bs4Dash/man/useAutoColor.Rd | 2 bs4Dash-2.0.3/bs4Dash/vignettes/css-preloader.Rmd | 2 28 files changed, 195 insertions(+), 106 deletions(-)
Title: Normalizing Transformation Functions
Description: Estimate a suite of normalizing transformations, including
a new adaptation of a technique based on ranks which can guarantee
normally distributed transformed data if there are no ties: ordered
quantile normalization (ORQ). ORQ normalization combines a rank-mapping
approach with a shifted logit approximation that allows
the transformation to work on data outside the original domain. It is
also able to handle new data within the original domain via linear
interpolation. The package is built to estimate the best normalizing
transformation for a vector consistently and accurately. It implements
the Box-Cox transformation, the Yeo-Johnson transformation, three types
of Lambert WxF transformations, and the ordered quantile normalization
transformation. It estimates the normalization efficacy of other
commonly used transformations, and it allows users to specify
custom transformations or normalization statistics. Finally, functionality
can be integrated into a machine learning workflow via recipes.
Author: Ryan Andrew Peterson [aut, cre]
Maintainer: Ryan Andrew Peterson <ryan.a.peterson@cuanschutz.edu>
Diff between bestNormalize versions 1.8.1 dated 2021-09-02 and 1.8.2 dated 2021-09-16
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/boxcox.R | 17 +++++++---------- R/yeojohnson.R | 18 +++++++++++------- inst/doc/bestNormalize.html | 6 +++--- inst/doc/customization.html | 4 ++-- tests/testthat/test_step_fns.R | 6 ++++-- 8 files changed, 45 insertions(+), 36 deletions(-)
Title: A Bayesian No-Effect- Concentration (NEC) Algorithm
Description: Implementation of No-Effect-Concentration estimation that uses 'brms' (see Burkner (2017)<doi:10.18637/jss.v080.i01>; Burkner (2018)<doi:10.32614/RJ-2018-017>; Carpenter 'et al.' (2017)<doi:10.18637/jss.v076.i01> to fit concentration(dose)-response data using Bayesian methods for the purpose of estimating 'ECX' values, but more particularly 'NEC' (see Fox (2010)<doi:10.1016/j.ecoenv.2009.09.012>. This package expands and supersedes an original version implemented in R2jags, see Fisher, Ricardo and Fox (2020)<doi:10.5281/ZENODO.3966864>.
Author: Rebecca Fisher [aut, cre],
Diego Barneche [aut],
Gerard Ricardo [aut],
David Fox [aut]
Maintainer: Rebecca Fisher <r.fisher@aims.gov.au>
Diff between bayesnec versions 1.0.1 dated 2021-07-02 and 2.0 dated 2021-09-16
bayesnec-1.0.1/bayesnec/R/ggbnec.R |only bayesnec-1.0.1/bayesnec/inst/doc/example1.R |only bayesnec-1.0.1/bayesnec/inst/doc/example2.R |only bayesnec-1.0.1/bayesnec/inst/doc/example2b.R |only bayesnec-1.0.1/bayesnec/inst/doc/example3.R |only bayesnec-1.0.1/bayesnec/inst/doc/example4.R |only bayesnec-1.0.1/bayesnec/man/amend.bayesmanecfit.Rd |only bayesnec-1.0.1/bayesnec/man/amend.default.Rd |only bayesnec-1.0.1/bayesnec/man/bind_ecx.Rd |only bayesnec-1.0.1/bayesnec/man/bind_nec.Rd |only bayesnec-1.0.1/bayesnec/man/check_data.Rd |only bayesnec-1.0.1/bayesnec/man/check_models.Rd |only bayesnec-1.0.1/bayesnec/man/check_priors.bayesmanecfit.Rd |only bayesnec-1.0.1/bayesnec/man/check_priors.bayesnecfit.Rd |only bayesnec-1.0.1/bayesnec/man/check_priors.default.Rd |only bayesnec-1.0.1/bayesnec/man/define_prior.Rd |only bayesnec-1.0.1/bayesnec/man/ecx.bayesmanecfit.Rd |only bayesnec-1.0.1/bayesnec/man/ecx.bayesnecfit.Rd |only bayesnec-1.0.1/bayesnec/man/ecx.default.Rd |only bayesnec-1.0.1/bayesnec/man/extract_simdat.Rd |only bayesnec-1.0.1/bayesnec/man/fit_bayesnec.Rd |only bayesnec-1.0.1/bayesnec/man/ggbnec.Rd |only bayesnec-1.0.1/bayesnec/man/ggbnec.bayesmanecfit.Rd |only bayesnec-1.0.1/bayesnec/man/ggbnec.bayesnecfit.Rd |only bayesnec-1.0.1/bayesnec/man/ggbnec.default.Rd |only bayesnec-1.0.1/bayesnec/man/ggbnec_data.bayesmanecfit.Rd |only bayesnec-1.0.1/bayesnec/man/ggbnec_data.bayesnecfit.Rd |only bayesnec-1.0.1/bayesnec/man/ggbnec_data.default.Rd |only bayesnec-1.0.1/bayesnec/man/is_bayesmanecfit.Rd |only bayesnec-1.0.1/bayesnec/man/is_bayesnecfit.Rd |only bayesnec-1.0.1/bayesnec/man/is_prebayesnecfit.Rd |only bayesnec-1.0.1/bayesnec/man/make_good_inits.Rd |only bayesnec-1.0.1/bayesnec/man/make_inits.Rd |only bayesnec-1.0.1/bayesnec/man/nec.bayesmanecfit.Rd |only bayesnec-1.0.1/bayesnec/man/nec.bayesnecfit.Rd |only bayesnec-1.0.1/bayesnec/man/nec.default.Rd |only bayesnec-1.0.1/bayesnec/man/nsec.bayesmanecfit.Rd |only bayesnec-1.0.1/bayesnec/man/nsec.bayesnecfit.Rd |only bayesnec-1.0.1/bayesnec/man/nsec.default.Rd |only bayesnec-1.0.1/bayesnec/man/prep_raw_data.Rd |only bayesnec-1.0.1/bayesnec/man/set_distribution.Rd |only bayesnec-1.0.1/bayesnec/man/validate_family.Rd |only bayesnec-1.0.1/bayesnec/man/validate_priors.Rd |only bayesnec-1.0.1/bayesnec/vignettes/example1a.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example1b.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example1c.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example1d.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example1e.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example1f.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example1g.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example1h.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example1i.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example1k.png |only bayesnec-1.0.1/bayesnec/vignettes/example2a.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example2b.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example2c.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example2d.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example2e.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example2f.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example3a.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example4a.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example4b.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example4c.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example4d.jpeg |only bayesnec-1.0.1/bayesnec/vignettes/example4e.jpeg |only bayesnec-2.0/bayesnec/DESCRIPTION | 14 bayesnec-2.0/bayesnec/MD5 | 393 ++-- bayesnec-2.0/bayesnec/NAMESPACE | 323 +-- bayesnec-2.0/bayesnec/NEWS.md | 64 bayesnec-2.0/bayesnec/R/add_criteria.R |only bayesnec-2.0/bayesnec/R/amend.R | 323 +-- bayesnec-2.0/bayesnec/R/autoplot.R |only bayesnec-2.0/bayesnec/R/average_endpoints.R | 176 + bayesnec-2.0/bayesnec/R/bayesmanecfit-class.R | 100 - bayesnec-2.0/bayesnec/R/bayesmanecfit-methods.R | 689 ++++--- bayesnec-2.0/bayesnec/R/bayesnec-package.R | 38 bayesnec-2.0/bayesnec/R/bayesnecfit-class.R | 114 - bayesnec-2.0/bayesnec/R/bayesnecfit-methods.R | 565 +++--- bayesnec-2.0/bayesnec/R/bayesnecformula.R |only bayesnec-2.0/bayesnec/R/beta_binomial2.R | 190 +- bayesnec-2.0/bayesnec/R/bnec.R | 492 ++--- bayesnec-2.0/bayesnec/R/bnecfit-class.R |only bayesnec-2.0/bayesnec/R/bnecfit-methods.R |only bayesnec-2.0/bayesnec/R/check_chains.R | 235 +- bayesnec-2.0/bayesnec/R/check_data.R | 222 +- bayesnec-2.0/bayesnec/R/check_models.R | 188 +- bayesnec-2.0/bayesnec/R/check_priors.R | 214 +- bayesnec-2.0/bayesnec/R/compare_endpoints.R | 156 - bayesnec-2.0/bayesnec/R/compare_fitted.R | 140 - bayesnec-2.0/bayesnec/R/compare_posterior.R | 120 - bayesnec-2.0/bayesnec/R/data.R | 76 bayesnec-2.0/bayesnec/R/define_prior.R | 283 +-- bayesnec-2.0/bayesnec/R/dispersion.R | 144 - bayesnec-2.0/bayesnec/R/ecx.R | 484 ++--- bayesnec-2.0/bayesnec/R/expand_classes.R | 306 +-- bayesnec-2.0/bayesnec/R/extract_simdat.R | 19 bayesnec-2.0/bayesnec/R/fit_bayesnec.R | 189 -- bayesnec-2.0/bayesnec/R/helpers.R | 888 ++++++---- bayesnec-2.0/bayesnec/R/inits_functions.R | 239 +- bayesnec-2.0/bayesnec/R/manecsummary-class.R | 113 - bayesnec-2.0/bayesnec/R/models.R | 169 - bayesnec-2.0/bayesnec/R/nec.R | 237 +- bayesnec-2.0/bayesnec/R/necsummary-class.R | 86 bayesnec-2.0/bayesnec/R/nsec.R | 368 ++-- bayesnec-2.0/bayesnec/R/prebayesnecfit-class.R | 105 - bayesnec-2.0/bayesnec/R/pred_equations.R | 260 +- bayesnec-2.0/bayesnec/R/pull_out.R | 166 + bayesnec-2.0/bayesnec/R/pull_prior.R | 60 bayesnec-2.0/bayesnec/R/sample_priors.R | 163 - bayesnec-2.0/bayesnec/R/set_distribution.R | 94 - bayesnec-2.0/bayesnec/R/show_params.R | 77 bayesnec-2.0/bayesnec/R/sysdata.rda |binary bayesnec-2.0/bayesnec/R/validate_family.R | 65 bayesnec-2.0/bayesnec/R/validate_loo_controls.R |only bayesnec-2.0/bayesnec/R/validate_priors.R | 68 bayesnec-2.0/bayesnec/README.md | 138 - bayesnec-2.0/bayesnec/build/vignette.rds |binary bayesnec-2.0/bayesnec/data/beta_binomial2.rda |binary bayesnec-2.0/bayesnec/data/manec_example.rda |binary bayesnec-2.0/bayesnec/inst/doc/example1.Rmd | 806 ++++----- bayesnec-2.0/bayesnec/inst/doc/example1.html | 419 ++-- bayesnec-2.0/bayesnec/inst/doc/example2.Rmd | 545 +++--- bayesnec-2.0/bayesnec/inst/doc/example2.html | 270 +-- bayesnec-2.0/bayesnec/inst/doc/example2b.Rmd | 823 +++++---- bayesnec-2.0/bayesnec/inst/doc/example2b.html | 297 ++- bayesnec-2.0/bayesnec/inst/doc/example3.Rmd | 386 ++-- bayesnec-2.0/bayesnec/inst/doc/example3.html | 196 +- bayesnec-2.0/bayesnec/inst/doc/example4.Rmd | 371 ++-- bayesnec-2.0/bayesnec/inst/doc/example4.html | 158 - bayesnec-2.0/bayesnec/man/amend.Rd | 140 - bayesnec-2.0/bayesnec/man/autoplot.bayesmanecfit.Rd |only bayesnec-2.0/bayesnec/man/autoplot.bayesnecfit.Rd |only bayesnec-2.0/bayesnec/man/average_endpoints.Rd | 184 +- bayesnec-2.0/bayesnec/man/bayesmanecfit-class.Rd | 112 - bayesnec-2.0/bayesnec/man/bayesnec-package.Rd | 38 bayesnec-2.0/bayesnec/man/bayesnecfit-class.Rd | 140 - bayesnec-2.0/bayesnec/man/bayesnecformula.Rd |only bayesnec-2.0/bayesnec/man/beta_binomial2.Rd | 24 bayesnec-2.0/bayesnec/man/beta_binomial2_lpmf.Rd | 46 bayesnec-2.0/bayesnec/man/beta_binomial2_rng.Rd | 42 bayesnec-2.0/bayesnec/man/bnec.Rd | 430 ++-- bayesnec-2.0/bayesnec/man/bnecfit-class.Rd |only bayesnec-2.0/bayesnec/man/c.bnecfit.Rd |only bayesnec-2.0/bayesnec/man/check_chains.Rd | 58 bayesnec-2.0/bayesnec/man/check_chains.bayesmanecfit.Rd | 66 bayesnec-2.0/bayesnec/man/check_chains.bayesnecfit.Rd | 58 bayesnec-2.0/bayesnec/man/check_chains.default.Rd | 58 bayesnec-2.0/bayesnec/man/check_formula.Rd |only bayesnec-2.0/bayesnec/man/check_priors.Rd | 63 bayesnec-2.0/bayesnec/man/compare_endpoints.Rd | 132 - bayesnec-2.0/bayesnec/man/compare_fitted.Rd | 82 bayesnec-2.0/bayesnec/man/compare_posterior.Rd | 132 - bayesnec-2.0/bayesnec/man/dispersion.Rd | 85 bayesnec-2.0/bayesnec/man/ecx.Rd | 165 - bayesnec-2.0/bayesnec/man/expand_manec.Rd | 97 - bayesnec-2.0/bayesnec/man/expand_nec.Rd | 83 bayesnec-2.0/bayesnec/man/figures/logo.png |binary bayesnec-2.0/bayesnec/man/formula.bayesmanecfit.Rd |only bayesnec-2.0/bayesnec/man/formula.bayesnecfit.Rd |only bayesnec-2.0/bayesnec/man/ggbnec_data.Rd | 87 bayesnec-2.0/bayesnec/man/is_manecsummary.Rd | 34 bayesnec-2.0/bayesnec/man/is_necsummary.Rd | 28 bayesnec-2.0/bayesnec/man/log_lik_beta_binomial2.Rd | 38 bayesnec-2.0/bayesnec/man/make_brmsformula.Rd |only bayesnec-2.0/bayesnec/man/manec_example.Rd | 42 bayesnec-2.0/bayesnec/man/manecsummary-class.Rd | 119 - bayesnec-2.0/bayesnec/man/model.frame.bayesmanecfit.Rd |only bayesnec-2.0/bayesnec/man/model.frame.bayesnecfit.Rd |only bayesnec-2.0/bayesnec/man/model.frame.bayesnecformula.Rd |only bayesnec-2.0/bayesnec/man/models.Rd | 129 - bayesnec-2.0/bayesnec/man/nec.Rd | 83 bayesnec-2.0/bayesnec/man/nec_data.Rd | 36 bayesnec-2.0/bayesnec/man/necsummary-class.Rd | 88 bayesnec-2.0/bayesnec/man/nsec.Rd | 143 - bayesnec-2.0/bayesnec/man/plot.bayesmanecfit.Rd | 152 - bayesnec-2.0/bayesnec/man/plot.bayesnecfit.Rd | 142 - bayesnec-2.0/bayesnec/man/plus-.bnecfit.Rd |only bayesnec-2.0/bayesnec/man/posterior_epred_beta_binomial2.Rd | 34 bayesnec-2.0/bayesnec/man/posterior_predict_beta_binomial2.Rd | 42 bayesnec-2.0/bayesnec/man/prebayesnecfit-class.Rd | 77 bayesnec-2.0/bayesnec/man/predict.bayesmanecfit.Rd | 54 bayesnec-2.0/bayesnec/man/predict.bayesnecfit.Rd | 54 bayesnec-2.0/bayesnec/man/print.bayesmanecfit.Rd | 42 bayesnec-2.0/bayesnec/man/print.bayesnecfit.Rd | 42 bayesnec-2.0/bayesnec/man/print.manecsummary.Rd | 40 bayesnec-2.0/bayesnec/man/print.necsummary.Rd | 41 bayesnec-2.0/bayesnec/man/pull_out.Rd | 81 bayesnec-2.0/bayesnec/man/pull_prior.Rd | 50 bayesnec-2.0/bayesnec/man/rhat.bayesmanecfit.Rd | 49 bayesnec-2.0/bayesnec/man/rhat.bayesnecfit.Rd | 43 bayesnec-2.0/bayesnec/man/sample_priors.Rd | 53 bayesnec-2.0/bayesnec/man/show_params.Rd | 58 bayesnec-2.0/bayesnec/man/summary.bayesmanecfit.Rd | 54 bayesnec-2.0/bayesnec/man/summary.bayesnecfit.Rd | 53 bayesnec-2.0/bayesnec/man/update.bnecfit.Rd |only bayesnec-2.0/bayesnec/tests/testthat.R | 8 bayesnec-2.0/bayesnec/tests/testthat/setup.R | 46 bayesnec-2.0/bayesnec/tests/testthat/test-amend.R | 84 bayesnec-2.0/bayesnec/tests/testthat/test-average_endpoints.R | 66 bayesnec-2.0/bayesnec/tests/testthat/test-bayesmanec_methods.R | 92 - bayesnec-2.0/bayesnec/tests/testthat/test-bayesnec_methods.R | 60 bayesnec-2.0/bayesnec/tests/testthat/test-bayesnecformula.R |only bayesnec-2.0/bayesnec/tests/testthat/test-beta_binomial2.R | 40 bayesnec-2.0/bayesnec/tests/testthat/test-bnec.R |only bayesnec-2.0/bayesnec/tests/testthat/test-check_chains.R | 33 bayesnec-2.0/bayesnec/tests/testthat/test-check_formula.R |only bayesnec-2.0/bayesnec/tests/testthat/test-check_models.R | 108 - bayesnec-2.0/bayesnec/tests/testthat/test-check_priors.R | 35 bayesnec-2.0/bayesnec/tests/testthat/test-compare_endpoints.R | 32 bayesnec-2.0/bayesnec/tests/testthat/test-compare_fitted.R | 34 bayesnec-2.0/bayesnec/tests/testthat/test-compare_posterior.R | 40 bayesnec-2.0/bayesnec/tests/testthat/test-data.R | 26 bayesnec-2.0/bayesnec/tests/testthat/test-define_prior.R | 180 +- bayesnec-2.0/bayesnec/tests/testthat/test-dispersion.R | 22 bayesnec-2.0/bayesnec/tests/testthat/test-ecx.R | 179 +- bayesnec-2.0/bayesnec/tests/testthat/test-expand_classes.R | 233 +- bayesnec-2.0/bayesnec/tests/testthat/test-helpers.R | 41 bayesnec-2.0/bayesnec/tests/testthat/test-make_brmsformula.R |only bayesnec-2.0/bayesnec/tests/testthat/test-model.frame.R |only bayesnec-2.0/bayesnec/tests/testthat/test-nec.R | 89 - bayesnec-2.0/bayesnec/tests/testthat/test-nsec.R | 158 - bayesnec-2.0/bayesnec/tests/testthat/test-pull_out.R |only bayesnec-2.0/bayesnec/tests/testthat/test-set_distribution.R | 56 bayesnec-2.0/bayesnec/tests/testthat/test-validate_loo_controls.R |only bayesnec-2.0/bayesnec/tests/testthat/test-wrangle_model_formula.R |only bayesnec-2.0/bayesnec/vignettes/bayesnec.bib | 352 ++- bayesnec-2.0/bayesnec/vignettes/example1.Rmd | 806 ++++----- bayesnec-2.0/bayesnec/vignettes/example1.Rmd.orig |only bayesnec-2.0/bayesnec/vignettes/example2.Rmd | 545 +++--- bayesnec-2.0/bayesnec/vignettes/example2.Rmd.orig |only bayesnec-2.0/bayesnec/vignettes/example2b.Rmd | 823 +++++---- bayesnec-2.0/bayesnec/vignettes/example2b.Rmd.orig |only bayesnec-2.0/bayesnec/vignettes/example3.Rmd | 386 ++-- bayesnec-2.0/bayesnec/vignettes/example3.Rmd.orig |only bayesnec-2.0/bayesnec/vignettes/example4.Rmd | 371 ++-- bayesnec-2.0/bayesnec/vignettes/example4.Rmd.orig |only bayesnec-2.0/bayesnec/vignettes/exmp2b_theoretical_curves.R |only bayesnec-2.0/bayesnec/vignettes/precompile.R |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp1-beta-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp1-binom-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp1-gammabase-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp1-negbinbase-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp1-poisson-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp2-allmods-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp2-checkpriors-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp2-decline-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp2-ecx4param-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp2-goodmod-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp2-pretty-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp2b-theoretical_ecx_curves.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp2b-theoretical_nec_curves.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp3-checkpriors-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp4-differences-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp4-fitted-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp4-fitteddiff-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp4-posterior-1.png |only bayesnec-2.0/bayesnec/vignettes/vignette-fig-exmp4-probplot-1.png |only 257 files changed, 12210 insertions(+), 10782 deletions(-)
Title: Import Professional Baseball Data from 'Retrosheet'
Description: A collection of tools to import and structure the (currently) single-season
event, game-log, roster, and schedule data available from <https://www.retrosheet.org>.
In particular, the event (a.k.a. play-by-play) files can be especially difficult to parse.
This package does the parsing on those files, returning the requested data in the most
practical R structure to use for sabermetric or other analyses.
Author: Colin Douglas [aut, cre, cph],
Richard Scriven [aut, cph]
Maintainer: Colin Douglas <colin@douglas.science>
Diff between retrosheet versions 1.1.3 dated 2020-12-14 and 1.1.4 dated 2021-09-16
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NEWS.md | 3 +++ tests/testthat/test-rmarkdown.R | 5 ++++- 4 files changed, 16 insertions(+), 10 deletions(-)
Title: Authentication, User Administration, and Hosting for 'shiny'
Apps
Description: Easily add modern authentication and user administration to your 'shiny' apps.
Customize user sign in and registration pages to match your brand. Control who can
access one or more of your 'shiny' apps.
Author: Andy Merlino [aut, cre],
Patrick Howard [aut],
Jimmy Briggs [aut]
Maintainer: Andy Merlino <andy.merlino@tychobra.com>
Diff between polished versions 0.3.0 dated 2021-03-09 and 0.4.0 dated 2021-09-16
DESCRIPTION | 16 +-- MD5 | 86 +++++++++++----- NAMESPACE | 31 ++++- NEWS.md | 16 ++- R/Sessions.R | 82 +++++++-------- R/api_00.R |only R/api_01_apps.R |only R/api_02_users.R |only R/api_03_app_users.R |only R/api_04_roles.R |only R/api_05_user_roles.R |only R/deploy_app.R | 142 +++++++++++++++++++++++---- R/global_sessions_config.R | 35 +++--- R/onLoad.R | 5 R/package_deps.R | 48 +++++++-- R/secure_server.R | 6 - R/send_password_reset_email_module.R | 5 R/sign_in_ui_default.R | 13 ++ R/sign_out_from_shiny.R | 2 R/user_access_module.R | 39 +------ R/user_edit_module.R | 11 -- R/utils.R | 9 - R/verify_email_module.R | 6 - build/vignette.rds |binary inst/doc/api_wrappers.R |only inst/doc/api_wrappers.Rmd |only inst/doc/api_wrappers.html |only inst/doc/create_custom_sign_in_pages.html | 10 + inst/examples/polished_example_01/config.yml | 4 man/Sessions.Rd | 2 man/add_app.Rd |only man/add_app_user.Rd |only man/add_role.Rd |only man/add_user.Rd |only man/add_user_role.Rd |only man/api_list_to_df.Rd |only man/delete_app.Rd |only man/delete_app_user.Rd |only man/delete_role.Rd |only man/delete_user.Rd |only man/delete_user_role.Rd |only man/deploy_app.Rd | 12 +- man/get_app_users.Rd |only man/get_apps.Rd |only man/get_dependent_packages.Rd |only man/get_roles.Rd |only man/get_user_roles.Rd |only man/get_users.Rd |only man/global_sessions_config.Rd | 3 man/polished_api_res.Rd |only man/print.polished_api_res.Rd |only man/set_api_key.Rd |only man/sign_in_ui_default.Rd | 7 + man/update_app.Rd |only man/update_app_user.Rd |only tests |only vignettes/api_wrappers.Rmd |only 57 files changed, 397 insertions(+), 193 deletions(-)