Sat, 25 Sep 2021

Package unfoldr (with last version 0.7.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-09-24 0.7.1
2019-05-23 0.7
2018-09-20 0.6.9
2018-09-01 0.6.8.1
2018-08-29 0.6.8
2018-06-30 0.6.5
2017-10-25 0.6.1
2016-10-06 0.6
2016-06-24 0.5.7
2016-06-24 0.5.8
2016-06-22 0.5.6
2016-05-26 0.5.5
2016-05-04 0.5.1
2016-05-01 0.5
2015-07-07 0.3
2015-07-03 0.2

Permanent link
Package robcp (with last version 0.3.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-09-20 0.3.2
2021-09-11 0.3.1

Permanent link
Package aRtsy updated to version 0.1.2 with previous version 0.1.1 dated 2021-09-04

Title: Generative Art with 'ggplot2'
Description: Provides algorithms for creating artworks in the 'ggplot2' language that incorporate some form of randomness.
Author: Koen Derks [aut, cre] (<https://orcid.org/0000-0002-5533-9349>)
Maintainer: Koen Derks <koen-derks@hotmail.com>

Diff between aRtsy versions 0.1.1 dated 2021-09-04 and 0.1.2 dated 2021-09-25

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Package phytools updated to version 0.7-90 with previous version 0.7-80 dated 2021-06-03

Title: Phylogenetic Tools for Comparative Biology (and Other Things)
Description: A wide range of functions for phylogenetic analysis. Functionality is concentrated in phylogenetic comparative biology, but also includes numerous methods for visualizing, manipulating, reading or writing, and even inferring phylogenetic trees. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, simulation of phylogenies and data, and multivariate analysis. There are a broad range of plotting methods for phylogenies and comparative data which include, but are not restricted to, methods for mapping trait evolution on trees, for projecting trees into phenotypic space or a geographic map, and for visualizing correlated speciation between trees. Finally, there are numerous functions for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data not covered by other packages. For instance, there are functions for randomly or non-randomly attaching species or clades to a phylogeny, for computing consensus phylogenies from a set, for simulating trees and phylogenetic data under a range of models, and for a wide variety of other manipulations and analyses that phylogenetic biologists might find useful in their research.
Author: Liam J. Revell
Maintainer: Liam J. Revell <liam.revell@umb.edu>

Diff between phytools versions 0.7-80 dated 2021-06-03 and 0.7-90 dated 2021-09-25

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Package maps updated to version 3.4.0 with previous version 3.3.0 dated 2018-04-03

Title: Draw Geographical Maps
Description: Display of maps. Projection code and larger maps are in separate packages ('mapproj' and 'mapdata').
Author: Original S code by Richard A. Becker and Allan R. Wilks. R version by Ray Brownrigg. Enhancements by Thomas P Minka and Alex Deckmyn.
Maintainer: Alex Deckmyn <alex.deckmyn@meteo.be>

Diff between maps versions 3.3.0 dated 2018-04-03 and 3.4.0 dated 2021-09-25

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Package migraph updated to version 0.7.1 with previous version 0.6.6 dated 2021-05-13

Title: Multimodal and Multilevel Network Analysis
Description: A set of tools that extend common social network analysis packages for analysing multimodal and multilevel networks. It includes functions for one- and two-mode (and sometimes three-mode) centrality, centralization, clustering, and constraint, as well as for one- and two-mode network regression and block-modelling. All functions operate with matrices, edge lists, and 'igraph', 'network'/'sna', and 'tidygraph' objects. The package is released as a complement to 'Multimodal Political Networks' (2021, ISBN:9781108985000), and includes various datasets used in the book.
Author: James Hollway [cph, cre, aut, ctb] (IHEID, <https://orcid.org/0000-0002-8361-9647>)
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>

Diff between migraph versions 0.6.6 dated 2021-05-13 and 0.7.1 dated 2021-09-25

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Package outliertree updated to version 1.7.6 with previous version 1.7.4 dated 2021-08-22

Title: Explainable Outlier Detection Through Decision Tree Conditioning
Description: Outlier detection method that flags suspicious values within observations, constrasting them against the normal values in a user-readable format, potentially describing conditions within the data that make a given outlier more rare. Full procedure is described in Cortes (2020) <arXiv:2001.00636>. Loosely based on the 'GritBot' <https://www.rulequest.com/gritbot-info.html> software.
Author: David Cortes
Maintainer: David Cortes <david.cortes.rivera@gmail.com>

Diff between outliertree versions 1.7.4 dated 2021-08-22 and 1.7.6 dated 2021-09-25

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Package simLife (with last version 0.5.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-04-08 0.5.2
2018-09-27 0.5.1
2018-09-20 0.5
2016-10-07 0.3
2016-06-26 0.2.3
2016-06-25 0.2.1
2016-05-31 0.2

Permanent link
Package ISR3 (with last version 0.98) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-10-13 0.98

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Package MVT (with last version 0.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-10-10 0.3

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Package endogMNP (with last version 0.2-1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2010-04-02 0.2-1
2009-08-28 0.1-2
2009-06-24 0.1-1

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Package selection.index updated to version 1.1.3 with previous version 1.1.2 dated 2021-07-26

Title: Analysis of Selection Index in Plant Breeding
Description: The aim of most plant breeding programmes is simultaneous improvement of several characters. An objective method involving simultaneous selection for several attributes then becomes necessary. It has been recognised that most rapid improvements in the economic value is expected from selection applied simultaneously to all the characters which determine the economic value of a plant, and appropriate assigned weights to each character according to their economic importance, heritability and correlations between characters. So the selection for economic value is a complex matter. If the component characters are combined together into an index in such a way that when selection is applied to the index, as if index is the character to be improved, most rapid improvement of economic value is expected. Such an index was first proposed by Smith (1937 <doi:10.1111/j.1469-1809.1936.tb02143.x>) based on the Fisher's (1936 <doi:10.1111/j.1469-1809.1936.tb02137.x>) "discriminant function" Dabholkar (1999 <https://books.google.co.in/books?id=mlFtumAXQ0oC&lpg=PA4&ots=Xgxp1qLuxS&dq=elements%20of%20biometrical%20genetics&lr&pg=PP1#v=onepage&q&f=false>). In this package selection index is calculated based on the Smith (1937) selection index method.
Author: Zankrut Goyani [aut, cre, cph], Alok Shrivasatva [aut], Yogesh Garde [aut], Arvind Chaudhary [aut], Kaushal Modha [aut]
Maintainer: Zankrut Goyani <zankrut20@gmail.com>

Diff between selection.index versions 1.1.2 dated 2021-07-26 and 1.1.3 dated 2021-09-25

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Package fastICA updated to version 1.2-3 with previous version 1.2-2 dated 2019-07-08

Title: FastICA Algorithms to Perform ICA and Projection Pursuit
Description: Implementation of FastICA algorithm to perform Independent Component Analysis (ICA) and Projection Pursuit.
Author: J L Marchini, C Heaton and B D Ripley <ripley@stats.ox.ac.uk>
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>

Diff between fastICA versions 1.2-2 dated 2019-07-08 and 1.2-3 dated 2021-09-25

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Package pcFactorStan updated to version 1.5.3 with previous version 1.5.2 dated 2020-09-15

Title: Stan Models for the Paired Comparison Factor Model
Description: Provides convenience functions and pre-programmed Stan models related to the paired comparison factor model. Its purpose is to make fitting paired comparison data using Stan easy. This package is described in Pritikin (2020) <doi:10.1016/j.heliyon.2020.e04821>.
Author: Joshua N. Pritikin [aut, cre] (<https://orcid.org/0000-0002-9862-5484>), Daniel C. Furr [ctb], Trustees of Columbia University [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>

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Package RDP updated to version 0.1.8 with previous version 0.1.7 dated 2021-08-16

Title: The Ramer-Douglas-Peucker Algorithm
Description: Pretty fast implementation of the Ramer-Douglas-Peucker algorithm for reducing the number of points on a 2D curve. Urs Ramer (1972), "An iterative procedure for the polygonal approximation of plane curves" <doi:10.1016/S0146-664X(72)80017-0>. David H. Douglas and Thomas K. Peucker (1973), "Algorithms for the Reduction of the Number of Points Required to Represent a Digitized Line or its Caricature" <doi:10.3138/FM57-6770-U75U-7727>.
Author: Robert Dahl Jacobsen [aut, cre]
Maintainer: Robert Dahl Jacobsen <cran@dahl-jacobsen.dk>

Diff between RDP versions 0.1.7 dated 2021-08-16 and 0.1.8 dated 2021-09-25

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Package influenceR updated to version 0.1.0.1 with previous version 0.1.0 dated 2015-09-03

Title: Software Tools to Quantify Structural Importance of Nodes in a Network
Description: Provides functionality to compute various node centrality measures on networks. Included are functions to compute betweenness centrality (by utilizing Madduri and Bader's SNAP library), implementations of Burt's constraint and effective network size (ENS) metrics, Borgatti's algorithm to identify key players, and Valente's bridging metric. On Unix systems, the betweenness, Key Players, and bridging implementations are parallelized with OpenMP, which may run faster on systems which have OpenMP configured.
Author: Jacobs Simon [aut], Khanna Aditya [aut, cre], Madduri Kamesh [ctb], Bader David [ctb]
Maintainer: Khanna Aditya <khanna7@uchicago.edu>

Diff between influenceR versions 0.1.0 dated 2015-09-03 and 0.1.0.1 dated 2021-09-25

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New package nevada with initial version 0.1.0
Package: nevada
Title: Network-Valued Data Analysis
Version: 0.1.0
Description: A flexible statistical framework for network-valued data analysis. It leverages the complexity of the space of distributions on graphs by using the permutation framework for inference as implemented in the 'flipr' package. Currently, only the two-sample testing problem is covered and generalization to k samples and regression will be added in the future as well. It is a 4-step procedure where the user chooses a suitable representation of the networks, a suitable metric to embed the representation into a metric space, one or more test statistics to target specific aspects of the distributions to be compared and a formula to compute the permutation p-value. Two types of inference are provided: a global test answering whether there is a difference between the distributions that generated the two samples and a local test for localizing differences on the network structure. The latter is assumed to be shared by all networks of both samples. References: Lovato, I., Pini, A., Stamm, A., Vantini, S. (2020) "Model-free two-sample test for network-valued data" <doi:10.1016/j.csda.2019.106896>; Lovato, I., Pini, A., Stamm, A., Taquet, M., Vantini, S. (2021) "Multiscale null hypothesis testing for network-valued data: Analysis of brain networks of patients with autism" <doi:10.1111/rssc.12463>.
License: GPL (>= 3)
Encoding: UTF-8
Imports: igraph, Rcpp, tidyr, dplyr, purrr, tibble, forcats, ggplot2, rlang, magrittr, flipr, cli, withr
URL: https://astamm.github.io/nevada/, https://github.com/astamm/nevada/
BugReports: https://github.com/astamm/nevada/issues/
Suggests: knitr, rmarkdown, covr
VignetteBuilder: knitr
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2021-09-20 14:47:29 UTC; stamm-a
Author: Ilenia Lovato [aut], Alessia Pini [aut], Aymeric Stamm [aut, cre] (<https://orcid.org/0000-0002-8725-3654>), Simone Vantini [aut]
Maintainer: Aymeric Stamm <aymeric.stamm@math.cnrs.fr>
Repository: CRAN
Date/Publication: 2021-09-25 06:40:02 UTC

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Package StratigrapheR updated to version 1.2.4 with previous version 1.2.3 dated 2021-05-28

Title: Integrated Stratigraphy
Description: Includes bases for litholog generation: graphical functions based on R base graphics, interval management functions and svg importation functions among others. Also include stereographic projection functions, and other functions made to deal with large datasets while keeping options to get into the details of the data. When using for publication please cite Wouters, S., Da Silva, A.-C., Boulvain, F., and Devleeschouwer, X.. In press. StratigrapheR: Concepts for Litholog Generation in R. The R Journal. The palaeomagnetism functions are based on: Tauxe, L., 2010. Essentials of Paleomagnetism. University of California Press. <https://earthref.org/MagIC/books/Tauxe/Essentials/>; Allmendinger, R. W., Cardozo, N. C., and Fisher, D., 2013, Structural Geology Algorithms: Vectors & Tensors: Cambridge, England, Cambridge University Press, 289 pp.; Cardozo, N., and Allmendinger, R. W., 2013, Spherical projections with OSXStereonet: Computers & Geosciences, v. 51, no. 0, p. 193 - 205, <doi: 10.1016/j.cageo.2012.07.021>.
Author: Sebastien Wouters [aut, cre], Adam D. Smith [ctb]
Maintainer: Sebastien Wouters <wouterseb@gmail.com>

Diff between StratigrapheR versions 1.2.3 dated 2021-05-28 and 1.2.4 dated 2021-09-25

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Package patentsview updated to version 0.3.0 with previous version 0.2.2 dated 2019-01-28

Title: An R Client to the 'PatentsView' API
Description: Provides functions to simplify the 'PatentsView' API (<https://patentsview.org/apis/purpose>) query language, send GET and POST requests to the API's seven endpoints, and parse the data that comes back.
Author: Christopher Baker [aut, cre]
Maintainer: Christopher Baker <chriscrewbaker@gmail.com>

Diff between patentsview versions 0.2.2 dated 2019-01-28 and 0.3.0 dated 2021-09-25

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Package bayesrules updated to version 0.0.2 with previous version 0.0.1 dated 2021-06-24

Title: Datasets and Supplemental Functions from Bayes Rules! Book
Description: Provides datasets and functions used for analysis and visualizations in the Bayes Rules! book (<https://www.bayesrulesbook.com>). The package contains a set of functions that summarize and plot Bayesian models from some conjugate families and another set of functions for evaluation of some Bayesian models.
Author: Mine Dogucu [aut, cre] (<https://orcid.org/0000-0002-8007-934X>), Alicia Johnson [aut], Miles Ott [aut] (<https://orcid.org/0000-0003-4457-6565>)
Maintainer: Mine Dogucu <mdogucu@gmail.com>

Diff between bayesrules versions 0.0.1 dated 2021-06-24 and 0.0.2 dated 2021-09-25

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Package OpenMPController (with last version 0.2-5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-12-10 0.2-5
2017-10-25 0.2-4
2013-05-13 0.1-2
2013-05-10 0.1-1

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Package N2H4 (with last version 0.5.9) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-07-10 0.5.9
2020-03-20 0.5.7
2019-05-16 0.5.4

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Package likeLTD (with last version 6.3.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-02-09 6.3.0
2017-06-11 6.2.1
2017-03-28 6.2.0
2016-10-24 6.1.1
2016-05-30 6.1.0
2016-02-21 6.0.4
2016-02-20 6.0.3
2016-01-05 6.0.2
2015-12-18 6.0.1
2015-12-16 6.0.0
2015-03-12 5.5.0
2014-07-10 5.4.0
2014-05-07 5.3.3
2014-03-27 5.3.2
2014-03-21 5.3.1
2014-03-16 5.3.0
2014-03-05 5.2.1
2014-03-04 5.2.0
2014-02-14 5.1.0
2013-12-09 5.0.3
2013-11-06 5.0.2
2013-10-01 5.0.1
2013-08-27 5.0.0

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Package DNH4 (with last version 0.1.11) was removed from CRAN

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2021-09-06 0.1.11

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Package BNN (with last version 1.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-02-02 1.0.2
2018-01-25 1.0.1
2018-01-13 1.0.0

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Package graphscan (with last version 1.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-10-14 1.1.1
2015-09-21 1.1
2015-02-10 1.0

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