Title: Tools for HLA Data
Description: A streamlined tool for eplet analysis of donor and recipient HLA (human leukocyte antigen) mismatch. Messy, low-resolution HLA typing data is cleaned, and imputed to high-resolution using the NMDP (National Marrow Donor Program) haplotype reference database <https://haplostats.org/haplostats>. High resolution data is analyzed for overall or single antigen eplet mismatch using a reference table (currently supporting 'HLAMatchMaker' <http://www.epitopes.net> versions 2 and 3). Data can enter or exit the workflow at different points depending on the user's aims and initial data quality.
Author: Joan Zhang [aut, cre],
Aileen Johnson [aut],
Christian P Larsen [cph, aut]
Maintainer: Joan Zhang <joan.zhang@emory.edu>
Diff between hlaR versions 0.1.0 dated 2021-04-13 and 0.1.1 dated 2021-09-27
DESCRIPTION | 6 MD5 | 22 - NAMESPACE | 1 R/allele-clean.R | 87 +++---- R/allele-haplotype.R | 111 ++++++--- R/eplet-MHC-I.R | 60 +++- R/eplet-MHC-II.R | 30 +- R/func-for-haplotype.R | 498 +++++++++++++++++++---------------------- R/globals.R | 12 build/vignette.rds |binary inst/doc/allele-haplotype.html | 9 inst/doc/eplet-mm.html | 9 12 files changed, 475 insertions(+), 370 deletions(-)
Title: Starter Kit for New Projects
Description: Get started with new projects by dropping a skeleton of a new
project into a new or existing directory, initialise git repositories,
and create reproducible environments with the 'renv' package. The
package allows for dynamically named files, folders, file content, as
well as the functionality to drop individual template files into
existing projects.
Author: Daniel D. Sjoberg [aut, cre] (<https://orcid.org/0000-0003-0862-2018>)
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between starter versions 0.1.5 dated 2021-07-22 and 0.1.6 dated 2021-09-27
DESCRIPTION | 20 ++-- MD5 | 10 +- NEWS.md | 70 +++++++------- R/create_symlink.R | 211 ++++++++++++++++++++----------------------- README.md | 14 ++ inst/doc/create_project.html | 8 - 6 files changed, 168 insertions(+), 165 deletions(-)
Title: Automatically Print R Objects to Appropriate Formats According
to the 'knitr' Output Format
Description: Extends the S3 generic function knit_print() in 'knitr'
to automatically print some objects using an appropriate format such as
Markdown or LaTeX. For example, data frames are automatically printed as
tables, and the help() pages can also be rendered in 'knitr' documents.
Author: Yihui Xie
Maintainer: Yihui Xie <xie@yihui.name>
Diff between printr versions 0.1.1 dated 2021-01-27 and 0.2 dated 2021-09-27
printr-0.1.1/printr/NEWS |only printr-0.2/printr/DESCRIPTION | 9 ++++----- printr-0.2/printr/MD5 | 10 +++++----- printr-0.2/printr/NEWS.md |only printr-0.2/printr/R/help.R | 5 ++--- printr-0.2/printr/build/vignette.rds |binary printr-0.2/printr/inst/doc/printr.html | 29 ++++++++++++++++------------- 7 files changed, 27 insertions(+), 26 deletions(-)
Title: Automatically Create a 'Shiny' App Based on Interactive 'Loon'
Widgets
Description: Package 'shiny' provides interactive web applications in R. Package 'loon' is an interactive toolkit engaged in open-ended, creative and unscripted data exploration. The 'loon.shiny' package can take 'loon' widgets and display a selfsame 'shiny' app.
Author: Zehao Xu [aut, cre],
R. Wayne Oldford [aut]
Maintainer: Zehao Xu <z267xu@uwaterloo.ca>
Diff between loon.shiny versions 1.0.0 dated 2021-06-10 and 1.0.1 dated 2021-09-27
loon.shiny-1.0.0/loon.shiny/NEWS.md |only loon.shiny-1.0.0/loon.shiny/R/loon_default_size.R |only loon.shiny-1.0.0/loon.shiny/README.md |only loon.shiny-1.0.0/loon.shiny/man/figures/ggplotLoonShiny.PNG |only loon.shiny-1.0.0/loon.shiny/man/figures/loon_shiny_scatterplot.PNG |only loon.shiny-1.0.1/loon.shiny/DESCRIPTION | 9 loon.shiny-1.0.1/loon.shiny/MD5 | 81 +- loon.shiny-1.0.1/loon.shiny/R/S3-vpStack.R |only loon.shiny-1.0.1/loon.shiny/R/adjust_loon.grobs.R | 6 loon.shiny-1.0.1/loon.shiny/R/deprecated_functions.R | 3 loon.shiny-1.0.1/loon.shiny/R/get_brushId.R | 393 ++++------ loon.shiny-1.0.1/loon.shiny/R/get_currentSiderBar.R | 2 loon.shiny-1.0.1/loon.shiny/R/get_itemLabel.R |only loon.shiny-1.0.1/loon.shiny/R/get_layers.R | 2 loon.shiny-1.0.1/loon.shiny/R/get_loonInfo.R | 6 loon.shiny-1.0.1/loon.shiny/R/get_loonWidgetsInfo-l_graph.R | 11 loon.shiny-1.0.1/loon.shiny/R/get_loonWidgetsInfo-l_plot.R | 32 loon.shiny-1.0.1/loon.shiny/R/get_loonWidgetsInfo-l_serialaxes.R | 6 loon.shiny-1.0.1/loon.shiny/R/get_set_viewPort.R | 2 loon.shiny-1.0.1/loon.shiny/R/get_worldViewPort.R | 12 loon.shiny-1.0.1/loon.shiny/R/glyph_pch_convert.R | 12 loon.shiny-1.0.1/loon.shiny/R/loon.server.R | 84 +- loon.shiny-1.0.1/loon.shiny/R/loon.shiny.R | 88 +- loon.shiny-1.0.1/loon.shiny/R/loon.ui.R | 80 +- loon.shiny-1.0.1/loon.shiny/R/loonGrob_positions.R | 149 +++ loon.shiny-1.0.1/loon.shiny/R/loon_reactive_l_graph.R | 93 -- loon.shiny-1.0.1/loon.shiny/R/loon_reactive_l_hist.R | 43 - loon.shiny-1.0.1/loon.shiny/R/loon_reactive_l_plot.R | 145 +-- loon.shiny-1.0.1/loon.shiny/R/loon_reactive_l_serialaxes.R | 70 + loon.shiny-1.0.1/loon.shiny/R/loon_worldView.R | 4 loon.shiny-1.0.1/loon.shiny/R/set_glyph_grob.R | 5 loon.shiny-1.0.1/loon.shiny/R/set_linkingInfo-l_graph.R | 10 loon.shiny-1.0.1/loon.shiny/R/set_linkingInfo-l_plot.R | 54 - loon.shiny-1.0.1/loon.shiny/R/set_size_grob.R | 71 - loon.shiny-1.0.1/loon.shiny/R/set_specifiedGlyph_grob.R | 59 - loon.shiny-1.0.1/loon.shiny/R/tagsDivPlot-l_hist.R | 10 loon.shiny-1.0.1/loon.shiny/R/tagsDivPlot-l_plot.R | 20 loon.shiny-1.0.1/loon.shiny/R/tagsDivPlot-l_serialaxes.R | 4 loon.shiny-1.0.1/loon.shiny/R/unitConversion.R |only loon.shiny-1.0.1/loon.shiny/R/update_layerSelectInput.R | 15 loon.shiny-1.0.1/loon.shiny/R/utils.R | 14 loon.shiny-1.0.1/loon.shiny/inst/doc/introduction.html | 4 loon.shiny-1.0.1/loon.shiny/man/figures/ggplotLoonShiny.gif |only loon.shiny-1.0.1/loon.shiny/man/figures/loonShiny.gif |binary loon.shiny-1.0.1/loon.shiny/man/loon.shiny.Rd | 59 - loon.shiny-1.0.1/loon.shiny/man/shiny.loon-deprecated.Rd | 9 46 files changed, 991 insertions(+), 676 deletions(-)
Title: Consensus Value Constructor
Description: An implementation of the International Bureau of Weights and Measures (BIPM) generalized consensus estimators used to assign the reference value in a key comparison exercise. This can also be applied to any interlaboratory study. Given a set of different sources, primary laboratories or measurement methods this package provides an evaluation of the variance components according to the selected statistical method for consensus building. It also implements the comparison among different consensus builders and evaluates the participating method or sources against the consensus reference value. Based on a diverse set of references, DerSimonian-Laird (1986) <doi:10.1016/0197-2456(86)90046-2>, Vangel-Ruhkin (1999) <doi:10.1111/j.0006-341X.1999.00129.x>, for a complete list of references look at the reference section in the package documentation.
Author: Hugo Gasca-Aragon
Maintainer: Hugo Gasca-Aragon <hugo_gasca_aragon@hotmail.com>
Diff between gconsensus versions 0.3.0 dated 2020-11-03 and 0.3.1 dated 2021-09-27
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/gconsensus-internal.R | 16 +++++++++++----- R/gconsensus.R | 22 ++++++++++++++++------ R/plot.gconsensus.R | 2 +- build/partial.rdb |binary man/gconsensus.Rd | 4 +++- 7 files changed, 41 insertions(+), 23 deletions(-)
Title: Functional Conditional Independence Testing with the GHCM
Description: A statistical hypothesis test for conditional independence.
Given residuals from a sufficiently powerful regression, it tests whether
the covariance of the residuals is vanishing. It can be applied to both
discretely-observed functional data and multivariate data.
Details of the method can be found in Anton Rask Lundborg, Rajen D. Shah and Jonas
Peters (2021) <arXiv:2101.07108>.
Author: Anton Rask Lundborg [aut, cre],
Rajen D. Shah [aut],
Jonas Peters [aut]
Maintainer: Anton Rask Lundborg <a.lundborg@statslab.cam.ac.uk>
Diff between ghcm versions 1.0.0 dated 2021-01-25 and 2.0.0 dated 2021-09-27
ghcm-1.0.0/ghcm/man/plot.ghcm.Rd |only ghcm-2.0.0/ghcm/DESCRIPTION | 10 ghcm-2.0.0/ghcm/LICENSE | 2 ghcm-2.0.0/ghcm/MD5 | 24 - ghcm-2.0.0/ghcm/NAMESPACE | 1 ghcm-2.0.0/ghcm/NEWS.md |only ghcm-2.0.0/ghcm/R/main.R | 182 +--------- ghcm-2.0.0/ghcm/build/vignette.rds |binary ghcm-2.0.0/ghcm/inst/doc/ghcm.R | 15 ghcm-2.0.0/ghcm/inst/doc/ghcm.Rmd | 36 -- ghcm-2.0.0/ghcm/inst/doc/ghcm.html | 406 +++++------------------- ghcm-2.0.0/ghcm/man/ghcm_test.Rd | 41 -- ghcm-2.0.0/ghcm/tests/testthat/test_ghcm_test.R | 39 -- ghcm-2.0.0/ghcm/vignettes/ghcm.Rmd | 36 -- 14 files changed, 166 insertions(+), 626 deletions(-)
Title: Transform Models into 'LaTeX' Equations
Description: The goal of 'equatiomatic' is to reduce the pain
associated with writing 'LaTeX' formulas from fitted models. The
primary function of the package, extract_eq(), takes a fitted model
object as its input and returns the corresponding 'LaTeX' code for the
model.
Author: Daniel Anderson [aut, cre] (<https://orcid.org/0000-0003-4699-4680>),
Andrew Heiss [aut] (<https://orcid.org/0000-0002-3948-3914>),
Jay Sumners [aut],
Joshua Rosenberg [ctb] (<https://orcid.org/0000-0003-2170-0447>),
Jonathan Sidi [ctb] (<https://orcid.org/0000-0002-4222-1819>),
Ellis Hughes [ctb] (<https://orcid.org/0000-0003-0637-4436>),
Thomas Fung [ctb] (<https://orcid.org/0000-0003-2601-0728>),
Reza Norouzian [ctb] (<https://orcid.org/0000-0002-0531-6886>),
Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets)
Maintainer: Daniel Anderson <daniela@uoregon.edu>
Diff between equatiomatic versions 0.2.0 dated 2021-01-30 and 0.3.0 dated 2021-09-27
DESCRIPTION | 119 +++--- MD5 | 141 ++++--- NAMESPACE | 15 NEWS.md | 65 ++- R/arrests.R |only R/create_eq.R | 533 ++++++++++++++++++++-------- R/distribution-wrapping.R |only R/equatiomatic-package.R | 12 R/extract_eq.R | 365 ++++++++++++++----- R/extract_lhs.R | 333 +++++++++++------ R/extract_rhs.R | 477 +++++++++++++++---------- R/helpers_forecast.R | 70 ++- R/hsb.R | 18 R/merMod.R | 276 ++++++++------ R/penguins.R | 23 + R/polls.R |only R/print.R | 39 +- R/shiny.R |only R/sim_longitudinal.R | 19 - R/sysdata.rda |only R/utils.R | 83 +++- build/equatiomatic.pdf |only build/partial.rdb |binary build/vignette.rds |binary data/arrests.rda |only data/polls.rda |only inst/doc/colors.R |only inst/doc/colors.Rmd |only inst/doc/colors.html |only inst/doc/forecast-arima.R | 26 - inst/doc/forecast-arima.Rmd | 28 - inst/doc/forecast-arima.html | 45 +- inst/doc/intro-equatiomatic.R | 85 ++-- inst/doc/intro-equatiomatic.Rmd | 85 ++-- inst/doc/intro-equatiomatic.html | 102 +++-- inst/doc/lme4-lmer.R | 109 +++-- inst/doc/lme4-lmer.Rmd | 109 +++-- inst/doc/lme4-lmer.html | 181 +++++---- inst/doc/plotting-integration.R | 42 +- inst/doc/plotting-integration.Rmd | 42 +- inst/doc/plotting-integration.html | 71 ++- inst/doc/tests_and_coverage.html | 2 inst/doc/usage-shiny.R |only inst/doc/usage-shiny.Rmd |only inst/doc/usage-shiny.html |only man/arrests.Rd |only man/equatiomatic-package.Rd | 17 man/extract_eq.Rd | 91 ++++ man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/hsb.Rd | 16 man/penguins.Rd | 23 + man/polls.Rd |only man/print.equation.Rd | 3 man/renderEq.Rd |only man/sim_longitudinal.Rd | 19 - tests/README.md | 168 +++++--- tests/testthat/_snaps/clm.md | 94 +++++ tests/testthat/_snaps/fontsize.md |only tests/testthat/_snaps/glm.md | 105 +++++ tests/testthat/_snaps/glmerMod.md |only tests/testthat/_snaps/lm.md | 72 +++ tests/testthat/_snaps/lmerMod.md | 563 ++++++++++++++++++++++++++++-- tests/testthat/_snaps/polr.md | 94 +++++ tests/testthat/test-clm.R | 143 ++++++- tests/testthat/test-fontsize.R |only tests/testthat/test-forecast-arima.R | 46 +- tests/testthat/test-glm.R | 275 ++++++++++++-- tests/testthat/test-glmerMod.R |only tests/testthat/test-lm.R | 116 +++++- tests/testthat/test-lmerMod.R | 436 +++++++++++++++++------ tests/testthat/test-polr.R | 131 ++++++ tests/testthat/test-print.R | 28 + tests/testthat/test-utils.R | 41 +- tests/testthat/test-wrapping-formatting.R | 44 +- vignettes/colors.Rmd |only vignettes/forecast-arima.Rmd | 28 - vignettes/intro-equatiomatic.Rmd | 85 ++-- vignettes/lme4-lmer.Rmd | 109 +++-- vignettes/plotting-integration.Rmd | 42 +- vignettes/usage-shiny.Rmd |only 87 files changed, 4566 insertions(+), 1738 deletions(-)
Title: Tidy Messy Data
Description: Tools to help to create tidy data, where each
column is a variable, each row is an observation, and each cell
contains a single value. 'tidyr' contains tools for changing the
shape (pivoting) and hierarchy (nesting and 'unnesting') of a dataset,
turning deeply nested lists into rectangular data frames
('rectangling'), and extracting values out of string columns. It also
includes tools for working with missing values (both implicit and
explicit).
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between tidyr versions 1.1.3 dated 2021-03-03 and 1.1.4 dated 2021-09-27
DESCRIPTION | 9 - MD5 | 46 ++--- NEWS.md | 15 + R/chop.R | 317 +++++++++++++++++++++++--------------- R/expand.R | 8 R/nest.R | 40 ---- R/pack.R | 9 - R/pivot-long.R | 28 +-- R/pivot-wide.R | 8 R/utils.R | 38 ++-- README.md | 14 - build/vignette.rds |binary inst/doc/in-packages.html | 47 ++--- inst/doc/nest.html | 15 - inst/doc/pivot.html | 280 ++++++++++++++++------------------ inst/doc/programming.html | 32 +-- inst/doc/rectangle.html | 318 ++++++++++++++++++--------------------- inst/doc/tidy-data.html | 44 ++--- man/chop.Rd | 6 man/nest.Rd | 6 tests/testthat/_snaps |only tests/testthat/test-chop.R | 154 +++++++++++++++++- tests/testthat/test-nest.R | 37 +++- tests/testthat/test-pivot-long.R | 9 + 24 files changed, 832 insertions(+), 648 deletions(-)
Title: Extended Susceptible-Exposed-Infected-Recovery Model
Description: Extended Susceptible-Exposed-Infected-Recovery Model for
handling high false negative rate and symptom based administration of
diagnostic tests. <doi:10.1101/2020.09.24.20200238>.
Author: Ritwik Bhaduri [aut],
Ritoban Kundu [aut],
Soumik Purkayastha [aut],
Lauren Beesley [aut],
Bhramar Mukherjee [aut],
Michael Kleinsasser [cre]
Maintainer: Michael Kleinsasser <biostat-cran-manager@umich.edu>
Diff between SEIRfansy versions 1.1.0 dated 2020-11-03 and 1.1.1 dated 2021-09-27
DESCRIPTION | 10 MD5 | 40 +- NAMESPACE | 64 ++-- R/R0_calculateR.R | 60 +-- R/SEIRfansy.R | 454 +++++++++++++++--------------- R/data.R | 44 +- R/global_define.R | 10 R/mcmc_performR.R | 232 +++++++-------- R/model_deterministic_simulateR.R | 146 ++++----- R/model_initializeR.R | 208 ++++++------- R/model_plotR.R | 574 +++++++++++++++++++------------------- R/model_stochastic_simulateR.R | 182 ++++++------ R/par_initializeR.R | 196 ++++++------ R/plot.R | 82 ++--- R/predict.R | 474 +++++++++++++++---------------- README.md | 554 ++++++++++++++++++------------------ man/SEIRfansy.Rd | 396 +++++++++++++------------- man/SEIRfansy.predict.Rd | 432 ++++++++++++++-------------- man/covid19.Rd | 64 ++-- man/plot.SEIRfansy.Rd | 38 +- man/plot.SEIRfansyPredict.Rd | 38 +- 21 files changed, 2151 insertions(+), 2147 deletions(-)
Title: Extension of `data.frame`
Description: Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.
Author: Matt Dowle [aut, cre],
Arun Srinivasan [aut],
Jan Gorecki [ctb],
Michael Chirico [ctb],
Pasha Stetsenko [ctb],
Tom Short [ctb],
Steve Lianoglou [ctb],
Eduard Antonyan [ctb],
Markus Bonsch [ctb],
Hugh Parsonage [ctb],
Scott Ritchie [ctb],
Kun Ren [ctb],
Xianying Tan [ctb],
Rick Saporta [ctb],
Otto Seiskari [ctb],
Xianghui Dong [ctb],
Michel Lang [ctb],
Watal Iwasaki [ctb],
Seth Wenchel [ctb],
Karl Broman [ctb],
Tobias Schmidt [ctb],
David Arenburg [ctb],
Ethan Smith [ctb],
Francois Cocquemas [ctb],
Matthieu Gomez [ctb],
Philippe Chataignon [ctb],
Nello Blaser [ctb],
Dmitry Selivanov [ctb],
Andrey Riabushenko [ctb],
Cheng Lee [ctb],
Declan Groves [ctb],
Daniel Possenriede [ctb],
Felipe Parages [ctb],
Denes Toth [ctb],
Mus Yaramaz-David [ctb],
Ayappan Perumal [ctb],
James Sams [ctb],
Martin Morgan [ctb],
Michael Quinn [ctb],
@javrucebo [ctb],
@marc-outins [ctb],
Roy Storey [ctb],
Manish Saraswat [ctb],
Morgan Jacob [ctb],
Michael Schubmehl [ctb],
Davis Vaughan [ctb],
Toby Hocking [ctb],
Leonardo Silvestri [ctb],
Tyson Barrett [ctb],
Jim Hester [ctb],
Anthony Damico [ctb],
Sebastian Freundt [ctb],
David Simons [ctb],
Elliott Sales de Andrade [ctb],
Cole Miller [ctb],
Jens Peder Meldgaard [ctb],
Vaclav Tlapak [ctb],
Kevin Ushey [ctb],
Dirk Eddelbuettel [ctb],
Ben Schwen [ctb]
Maintainer: Matt Dowle <mattjdowle@gmail.com>
Diff between data.table versions 1.14.0 dated 2021-02-21 and 1.14.2 dated 2021-09-27
data.table-1.14.0/data.table/vignettes/Makefile |only data.table-1.14.2/data.table/DESCRIPTION | 6 data.table-1.14.2/data.table/MD5 | 43 ++--- data.table-1.14.2/data.table/NEWS.md | 13 + data.table-1.14.2/data.table/README.md | 2 data.table-1.14.2/data.table/build/vignette.rds |binary data.table-1.14.2/data.table/inst/doc/datatable-benchmarking.html | 76 +-------- data.table-1.14.2/data.table/inst/doc/datatable-faq.Rmd | 2 data.table-1.14.2/data.table/inst/doc/datatable-faq.html | 78 +-------- data.table-1.14.2/data.table/inst/doc/datatable-importing.html | 76 +-------- data.table-1.14.2/data.table/inst/doc/datatable-intro.html | 76 +-------- data.table-1.14.2/data.table/inst/doc/datatable-keys-fast-subset.html | 82 +-------- data.table-1.14.2/data.table/inst/doc/datatable-reference-semantics.html | 76 +-------- data.table-1.14.2/data.table/inst/doc/datatable-reshape.html | 76 +-------- data.table-1.14.2/data.table/inst/doc/datatable-sd-usage.html | 76 +-------- data.table-1.14.2/data.table/inst/doc/datatable-secondary-indices-and-auto-indexing.html | 84 +--------- data.table-1.14.2/data.table/inst/tests/tests.Rraw.bz2 |binary data.table-1.14.2/data.table/man/merge.Rd | 6 data.table-1.14.2/data.table/src/data.table.h | 2 data.table-1.14.2/data.table/src/frollR.c | 2 data.table-1.14.2/data.table/src/init.c | 2 data.table-1.14.2/data.table/src/types.c | 2 data.table-1.14.2/data.table/vignettes/datatable-faq.Rmd | 2 23 files changed, 148 insertions(+), 634 deletions(-)
Title: Hydrologic Modelling System for R Users
Description: Hydrologic modelling system is an object oriented tool for simulation and analysis of hydrologic events. The package proposes functions and methods for construction, simulation, visualization, and calibration of a hydrologic model.
Author: Rezgar Arabzadeh; Shahab Araghinejad
Maintainer: Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>
Diff between RHMS versions 1.6 dated 2019-04-09 and 1.7 dated 2021-09-27
RHMS-1.6/RHMS/R/RHMS-internal.R |only RHMS-1.7/RHMS/DESCRIPTION | 10 - RHMS-1.7/RHMS/MD5 | 61 ++++---- RHMS-1.7/RHMS/NAMESPACE | 2 RHMS-1.7/RHMS/R/transform.base.R | 163 +++++++++++------------- RHMS-1.7/RHMS/man/RHMS-package.Rd | 8 - RHMS-1.7/RHMS/man/abstraction.base.Rd | 2 RHMS-1.7/RHMS/man/addObjectToBasin.Rd | 6 RHMS-1.7/RHMS/man/baseFlowSeparation.Rd | 2 RHMS-1.7/RHMS/man/baseFlowSeparation.base.Rd | 2 RHMS-1.7/RHMS/man/baseFlowSeparation.default.Rd | 2 RHMS-1.7/RHMS/man/createDiversion.Rd | 2 RHMS-1.7/RHMS/man/createDiversion.base.Rd | 2 RHMS-1.7/RHMS/man/createDiversion.default.Rd | 2 RHMS-1.7/RHMS/man/createJunction.Rd | 4 RHMS-1.7/RHMS/man/createJunction.base.Rd | 4 RHMS-1.7/RHMS/man/createJunction.default.Rd | 4 RHMS-1.7/RHMS/man/createReach.Rd | 4 RHMS-1.7/RHMS/man/createReach.base.Rd | 6 RHMS-1.7/RHMS/man/createReach.default.Rd | 4 RHMS-1.7/RHMS/man/createReservoir.Rd | 4 RHMS-1.7/RHMS/man/createReservoir.base.Rd | 4 RHMS-1.7/RHMS/man/createReservoir.default.Rd | 4 RHMS-1.7/RHMS/man/createSubbasin.Rd | 2 RHMS-1.7/RHMS/man/createSubbasin.base.Rd | 4 RHMS-1.7/RHMS/man/createSubbasin.default.Rd | 4 RHMS-1.7/RHMS/man/loss.Rd | 2 RHMS-1.7/RHMS/man/loss.base.Rd | 2 RHMS-1.7/RHMS/man/loss.default.Rd | 2 RHMS-1.7/RHMS/man/reachRouting.base.Rd | 5 RHMS-1.7/RHMS/man/reachRouting.default.Rd | 4 RHMS-1.7/RHMS/man/sim.Rd | 4 32 files changed, 163 insertions(+), 168 deletions(-)
Title: Run 'R CMD check' from 'R' and Capture Results
Description: Run 'R CMD check' from 'R' and capture the results
of the individual checks. Supports running checks in the background,
timeouts, pretty printing and comparing check results.
Author: Gábor Csárdi [cre, aut]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between rcmdcheck versions 1.3.3 dated 2019-05-07 and 1.4.0 dated 2021-09-27
rcmdcheck-1.3.3/rcmdcheck/tests/testthat/comparison-newly-failing.txt |only rcmdcheck-1.3.3/rcmdcheck/tests/testthat/parse-install-fail.txt |only rcmdcheck-1.3.3/rcmdcheck/tests/testthat/parse-test-fail.txt |only rcmdcheck-1.4.0/rcmdcheck/DESCRIPTION | 37 - rcmdcheck-1.4.0/rcmdcheck/MD5 | 125 +++-- rcmdcheck-1.4.0/rcmdcheck/NAMESPACE | 21 rcmdcheck-1.4.0/rcmdcheck/NEWS.md | 54 ++ rcmdcheck-1.4.0/rcmdcheck/R/api.R | 2 rcmdcheck-1.4.0/rcmdcheck/R/background.R | 68 +- rcmdcheck-1.4.0/rcmdcheck/R/build.R | 31 + rcmdcheck-1.4.0/rcmdcheck/R/callback.R | 109 +--- rcmdcheck-1.4.0/rcmdcheck/R/comparison-summary.R | 9 rcmdcheck-1.4.0/rcmdcheck/R/comparison.R | 4 rcmdcheck-1.4.0/rcmdcheck/R/cran.R | 34 - rcmdcheck-1.4.0/rcmdcheck/R/env.R |only rcmdcheck-1.4.0/rcmdcheck/R/error.R | 2 rcmdcheck-1.4.0/rcmdcheck/R/http.R |only rcmdcheck-1.4.0/rcmdcheck/R/options.R |only rcmdcheck-1.4.0/rcmdcheck/R/package.R | 179 +++++-- rcmdcheck-1.4.0/rcmdcheck/R/parse.R | 29 - rcmdcheck-1.4.0/rcmdcheck/R/print.R | 31 - rcmdcheck-1.4.0/rcmdcheck/R/session-info.R | 52 +- rcmdcheck-1.4.0/rcmdcheck/R/styles.R | 53 +- rcmdcheck-1.4.0/rcmdcheck/R/utils.R | 82 ++- rcmdcheck-1.4.0/rcmdcheck/README.md | 238 +++++++--- rcmdcheck-1.4.0/rcmdcheck/man/check_details.Rd | 4 rcmdcheck-1.4.0/rcmdcheck/man/compare_checks.Rd | 3 rcmdcheck-1.4.0/rcmdcheck/man/compare_to_cran.Rd | 3 rcmdcheck-1.4.0/rcmdcheck/man/cran_check_flavours.Rd | 2 rcmdcheck-1.4.0/rcmdcheck/man/cran_check_results.Rd | 7 rcmdcheck-1.4.0/rcmdcheck/man/data_frame.Rd | 2 rcmdcheck-1.4.0/rcmdcheck/man/parse_check.Rd | 2 rcmdcheck-1.4.0/rcmdcheck/man/parse_check_url.Rd | 2 rcmdcheck-1.4.0/rcmdcheck/man/print.rcmdcheck.Rd | 11 rcmdcheck-1.4.0/rcmdcheck/man/rcmdcheck-config.Rd |only rcmdcheck-1.4.0/rcmdcheck/man/rcmdcheck.Rd | 101 +++- rcmdcheck-1.4.0/rcmdcheck/man/rcmdcheck_process.Rd | 8 rcmdcheck-1.4.0/rcmdcheck/tests/testthat.R | 2 rcmdcheck-1.4.0/rcmdcheck/tests/testthat/_snaps |only rcmdcheck-1.4.0/rcmdcheck/tests/testthat/bad1/DESCRIPTION | 3 rcmdcheck-1.4.0/rcmdcheck/tests/testthat/bad1/R/package.R | 5 rcmdcheck-1.4.0/rcmdcheck/tests/testthat/bad1/tools |only rcmdcheck-1.4.0/rcmdcheck/tests/testthat/bad1/vignettes/test.Rmd | 2 rcmdcheck-1.4.0/rcmdcheck/tests/testthat/bad3 |only rcmdcheck-1.4.0/rcmdcheck/tests/testthat/bad4 |only rcmdcheck-1.4.0/rcmdcheck/tests/testthat/fixtures/badenc.fail |only rcmdcheck-1.4.0/rcmdcheck/tests/testthat/fixtures/checks |only rcmdcheck-1.4.0/rcmdcheck/tests/testthat/fixtures/test-error.txt | 28 - rcmdcheck-1.4.0/rcmdcheck/tests/testthat/fixtures/tests-as-cran.txt |only rcmdcheck-1.4.0/rcmdcheck/tests/testthat/fixtures/tests-not-as-cran.txt |only rcmdcheck-1.4.0/rcmdcheck/tests/testthat/helpers.R | 69 +- rcmdcheck-1.4.0/rcmdcheck/tests/testthat/test-auto_clean.R | 1 rcmdcheck-1.4.0/rcmdcheck/tests/testthat/test-build.R | 20 rcmdcheck-1.4.0/rcmdcheck/tests/testthat/test-callback.R |only rcmdcheck-1.4.0/rcmdcheck/tests/testthat/test-color.R |only rcmdcheck-1.4.0/rcmdcheck/tests/testthat/test-comparison.R | 20 rcmdcheck-1.4.0/rcmdcheck/tests/testthat/test-cran.R | 7 rcmdcheck-1.4.0/rcmdcheck/tests/testthat/test-crash.R |only rcmdcheck-1.4.0/rcmdcheck/tests/testthat/test-env.R |only rcmdcheck-1.4.0/rcmdcheck/tests/testthat/test-errors.R | 87 ++- rcmdcheck-1.4.0/rcmdcheck/tests/testthat/test-http.R |only rcmdcheck-1.4.0/rcmdcheck/tests/testthat/test-parse.R | 27 - rcmdcheck-1.4.0/rcmdcheck/tests/testthat/test-rcmdcheck.R | 48 +- rcmdcheck-1.4.0/rcmdcheck/tests/testthat/test-tests.R | 2 rcmdcheck-1.4.0/rcmdcheck/tests/testthat/test-utils.R |only 65 files changed, 1089 insertions(+), 537 deletions(-)
Title: Pacote Para Analise Multivariada
Description: Package with multivariate analysis methodologies for experiment evaluation.
The package estimates dissimilarity measures, builds dendrograms, obtains MANOVA,
principal components, canonical variables, etc. (Pacote com metodologias de analise
multivariada para avaliação de experimentos. O pacote estima medidas de dissimilaridade,
construi de dendogramas, obtem a MANOVA, componentes principais, variáveis canônicas, etc.)
Author: Alcinei Mistico Azevedo [aut, cre]
(<https://orcid.org/0000-0001-5196-0851>)
Maintainer: Alcinei Mistico Azevedo <alcineimistico@hotmail.com>
Diff between MultivariateAnalysis versions 0.4.2 dated 2021-09-19 and 0.4.3 dated 2021-09-27
DESCRIPTION | 6 MD5 | 38 +- NAMESPACE | 1 NEWS.md | 4 R/Dados.Fat3.DBC.R |only R/Dados.Fat3.DIC.R |only R/MANOVA.R | 48 ++ R/VariaveisCanonicas.R | 47 ++ R/VariaveisCanonicas2.R | 386 ++++++++++++++++++++-- data/Dados.Fat3.DBC.txt |only data/Dados.Fat3.DIC.txt |only inst/doc/Exemplo_dados_DBC_Misto.html | 6 inst/doc/Exemplo_dados_binarios.html | 8 inst/doc/Exemplo_dados_misto.html | 12 inst/doc/Exemplo_dados_multicategoricos.html | 4 inst/doc/Exemplo_dados_quantitativos_DBC.html | 6 inst/doc/Exemplo_dados_quantitativos_DIC.html | 8 inst/doc/Exemplo_dados_quantitativos_FAT_DBC.html | 8 inst/doc/Exemplo_dados_quantitativos_Med.html | 6 man/Dados.Fat3.DBC.Rd |only man/Dados.Fat3.DIC.Rd |only man/MANOVA.Rd | 21 - man/VariaveisCanonicas.Rd | 40 +- 23 files changed, 561 insertions(+), 88 deletions(-)
More information about MultivariateAnalysis at CRAN
Permanent link
Title: Interactive Statistical Data Visualization
Description: An extendable toolkit for interactive data visualization and exploration.
Author: Adrian Waddell [aut],
R. Wayne Oldford [aut, cre, ths],
Zehao Xu [ctb],
Martin Gauch [ctb]
Maintainer: R. Wayne Oldford <rwoldford@uwaterloo.ca>
Diff between loon versions 1.3.7 dated 2021-06-14 and 1.3.8 dated 2021-09-27
loon-1.3.7/loon/R/as_r_size.R |only loon-1.3.7/loon/R/l_hexcolor.R |only loon-1.3.7/loon/inst/doc/minorities.R |only loon-1.3.7/loon/inst/doc/minorities.Rmd |only loon-1.3.7/loon/inst/doc/minorities.html |only loon-1.3.7/loon/vignettes/images/loonRmarkdown |only loon-1.3.7/loon/vignettes/minorities.Rmd |only loon-1.3.8/loon/DESCRIPTION | 10 loon-1.3.8/loon/MD5 | 104 ++- loon-1.3.8/loon/NAMESPACE | 12 loon-1.3.8/loon/NEWS.md | 26 loon-1.3.8/loon/R/as_grid_size.R |only loon-1.3.8/loon/R/deprecatedFunction.R |only loon-1.3.8/loon/R/facet_layout.R | 98 +-- loon-1.3.8/loon/R/get_facets.R | 82 -- loon-1.3.8/loon/R/l_ColorList.R | 107 +++ loon-1.3.8/loon/R/loonFacets.R | 12 loon-1.3.8/loon/R/loonGrob.R | 139 +++- loon-1.3.8/loon/R/loonGrobInstantiation.R |only loon-1.3.8/loon/R/loonGrob_l_facet_grid.R | 3 loon-1.3.8/loon/R/loonGrob_l_facet_wrap.R | 13 loon-1.3.8/loon/R/loonGrob_l_layer_scatterplot.R | 191 ++++-- loon-1.3.8/loon/R/loonGrob_l_serialaxes.R | 25 loon-1.3.8/loon/README.md | 2 loon-1.3.8/loon/build/vignette.rds |binary loon-1.3.8/loon/inst/doc/introduction.html | 8 loon-1.3.8/loon/inst/doc/logicalQueries.Rmd | 3 loon-1.3.8/loon/inst/doc/logicalQueries.html | 4 loon-1.3.8/loon/inst/doc/loonPlotsAndGridGraphics.R |only loon-1.3.8/loon/inst/doc/loonPlotsAndGridGraphics.Rmd |only loon-1.3.8/loon/inst/doc/loonPlotsAndGridGraphics.html |only loon-1.3.8/loon/inst/doc/savingLoonPlots.Rmd | 4 loon-1.3.8/loon/inst/doc/savingLoonPlots.html | 20 loon-1.3.8/loon/inst/doc/teaching-example-smoothing.R | 14 loon-1.3.8/loon/inst/doc/teaching-example-smoothing.Rmd | 24 loon-1.3.8/loon/inst/doc/teaching-example-smoothing.html | 291 +++++----- loon-1.3.8/loon/inst/tcl/loon/library/oo_ScalesGuidesVisual.tcl | 8 loon-1.3.8/loon/man/as_grid_size.Rd |only loon-1.3.8/loon/man/as_hex6color.Rd |only loon-1.3.8/loon/man/char2num.data.frame.Rd |only loon-1.3.8/loon/man/color_loon.Rd | 3 loon-1.3.8/loon/man/facet_grid_layout.Rd | 4 loon-1.3.8/loon/man/facet_separate_layout.Rd | 4 loon-1.3.8/loon/man/facet_wrap_layout.Rd | 4 loon-1.3.8/loon/man/get_display_color.Rd |only loon-1.3.8/loon/man/get_font_info_from_tk.Rd |only loon-1.3.8/loon/man/get_layer_states.Rd |only loon-1.3.8/loon/man/get_model_display_order.Rd |only loon-1.3.8/loon/man/glyph_to_pch.Rd |only loon-1.3.8/loon/man/l_colorName.Rd | 45 + loon-1.3.8/loon/man/l_hexcolor.Rd | 6 loon-1.3.8/loon/man/loonGrobInstantiation.Rd |only loon-1.3.8/loon/man/tcl_img_2_r_raster.Rd |only loon-1.3.8/loon/tests/testthat/test_facets.R | 2 loon-1.3.8/loon/vignettes/images/loonPlotsAndGridGraphics |only loon-1.3.8/loon/vignettes/logicalQueries.Rmd | 3 loon-1.3.8/loon/vignettes/loonPlotsAndGridGraphics.Rmd |only loon-1.3.8/loon/vignettes/savingLoonPlots.Rmd | 4 loon-1.3.8/loon/vignettes/teaching-example-smoothing.Rmd | 24 59 files changed, 836 insertions(+), 463 deletions(-)
Title: Analysis of Diversity
Description: Functions, data sets and examples for the calculation of various indices of biodiversity including species, functional and phylogenetic diversity. Part of the indices are expressed in terms of equivalent numbers of species. The package also provides ways to partition biodiversity across spatial or temporal scales (alpha, beta, gamma diversities). In addition to the quantification of biodiversity, ordination approaches are available which rely on diversity indices and allow the detailed identification of species, functional or phylogenetic differences between communities.
Author: Sandrine Pavoine
Maintainer: Sandrine Pavoine <sandrine.pavoine@mnhn.fr>
Diff between adiv versions 2.1 dated 2021-08-21 and 2.1.1 dated 2021-09-27
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/FPdivparam.R | 5 +++-- build/partial.rdb |binary 4 files changed, 10 insertions(+), 9 deletions(-)
Title: Phylogenetic Tree Search Using Custom Optimality Criteria
Description: Search for phylogenetic trees that are optimal using a
user-defined criterion.
Contains a "shiny" user interface for interactive tree search and exploration
of results, including character visualization, rogue taxon detection,
tree space mapping, and cluster consensus trees.
Handles inapplicable data using the algorithm of Brazeau, Guillerme and
Smith (2019) <doi:10.1093/sysbio/syy083> using the "Morphy" library.
Implements Profile Parsimony (Faith and Trueman, 2001)
<doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969)
<doi:10.2307/2412182>.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Martin Brazeau [cph] (<https://orcid.org/0000-0002-0650-1282>)
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeSearch versions 1.0.0 dated 2021-09-22 and 1.0.1 dated 2021-09-27
DESCRIPTION | 6 ++-- MD5 | 40 ++++++++++++++++---------------- NAMESPACE | 2 + NEWS.md | 11 ++++++++ R/MaximizeParsimony.R | 9 ++++--- R/RandomTreeScore.R | 9 +++++-- R/SPR.R | 24 +++++++++++++++++-- R/mpl_morphy_objects.R | 1 build/partial.rdb |binary inst/doc/custom.html | 14 +++++------ inst/doc/getting-started.html | 4 +-- inst/doc/profile-scores.html | 4 +-- inst/doc/profile.html | 4 +-- inst/doc/tree-search.html | 10 ++++---- src/build_postorder.h | 7 ++++- src/rearrange.cpp | 42 +++++++++++++++++----------------- tests/testthat/test-RandomTreeScore.R | 41 ++++++++++++++++++--------------- tests/testthat/test-rearrange.cpp.R | 6 ++-- vignettes/gui_char.png |binary vignettes/gui_rogue.png |binary vignettes/gui_space.png |binary 21 files changed, 141 insertions(+), 93 deletions(-)
Title: Analyze Chess Games with the 'Stockfish' Engine
Description: An implementation of the UCI open communication protocol that ships
with 'Stockfish' <https://stockfishchess.org/>, a very popular, open source,
powerful chess engine written in C++.
Author: Caio Lente [aut, cre],
Tord Romstad [ctb],
Marco Costalba [ctb],
Joona Kiiski [ctb],
Gary Linscott [ctb]
Maintainer: Caio Lente <clente@curso-r.com>
Diff between stockfish versions 0.1.2 dated 2021-05-04 and 0.1.3 dated 2021-09-27
stockfish-0.1.2/stockfish/configure |only stockfish-0.1.2/stockfish/src/Makevars.in |only stockfish-0.1.2/stockfish/src/dummy.cpp |only stockfish-0.1.2/stockfish/tools |only stockfish-0.1.3/stockfish/DESCRIPTION | 13 +++---- stockfish-0.1.3/stockfish/MD5 | 32 ++++++++----------- stockfish-0.1.3/stockfish/NEWS.md | 5 ++ stockfish-0.1.3/stockfish/R/fish.R | 12 +++---- stockfish-0.1.3/stockfish/README.md | 19 ++++------- stockfish-0.1.3/stockfish/cleanup | 2 - stockfish-0.1.3/stockfish/man/fish.Rd | 8 ++-- stockfish-0.1.3/stockfish/man/fish_find.Rd | 4 +- stockfish-0.1.3/stockfish/src/Makevars |only stockfish-0.1.3/stockfish/src/Makevars.win | 1 stockfish-0.1.3/stockfish/src/bitboard.h | 4 +- stockfish-0.1.3/stockfish/src/misc.cpp | 4 +- stockfish-0.1.3/stockfish/src/tbprobe.cpp | 2 - stockfish-0.1.3/stockfish/tests/testthat.R | 13 ------- stockfish-0.1.3/stockfish/tests/testthat/test-fish.R | 3 + 19 files changed, 54 insertions(+), 68 deletions(-)
Title: Test and Item Analysis via Shiny
Description: Package including functions and interactive shiny application
for the psychometric analysis of educational tests, psychological
assessments, health-related and other types of multi-item
measurements, or ratings from multiple raters.
Author: Patricia Martinkova [aut, cre],
Adela Hladka [aut],
Jan Netik [aut],
Ondrej Leder [ctb],
Jakub Houdek [ctb],
Lubomir Stepanek [ctb],
Tomas Jurica [ctb],
Jana Vorlickova [ctb]
Maintainer: Patricia Martinkova <martinkova@cs.cas.cz>
Diff between ShinyItemAnalysis versions 1.3.7 dated 2021-05-31 and 1.4.0 dated 2021-09-27
ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/AIBS.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/BFI2.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/CZmatura.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/CZmaturaS.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/HCI.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/HCIdata.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/HCIgrads.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/HCIkey.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/HCIprepost.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/HCItest.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/HCItestretest.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/LearningToLearn.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/MSclinical.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/NIH.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/R/TestAnxietyCor.R |only ShinyItemAnalysis-1.3.7/ShinyItemAnalysis/inst/shiny-examples |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/DESCRIPTION | 40 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/MD5 | 469 +++++----- ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/NAMESPACE | 45 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/NEWS.md | 77 + ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/DDplot.R | 2 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/DistractorAnalysis.R | 2 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/ICCrestricted.R | 6 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/ItemAnalysis.R | 22 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/Logistik_edited.R | 2 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/ShinyItemAnalysis-package.R | 47 - ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/cronbach_alpha.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/dataMedical.R | 16 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/dataMedicalgraded.R | 16 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/dataMedicalkey.R | 16 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/dataMedicaltest.R | 16 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_AIBS.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_AttitudesExpulsion.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_BFI2.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_CZmatura.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_CZmaturaS.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_HCI.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_HCIdata.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_HCIgrads.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_HCIkey.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_HCIprepost.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_HCItest.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_HCItestretest.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_HeightInventory.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_LearningToLearn.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_MSclinical.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_NIH.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/data_TestAnxietyCor.R |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/difLord_edited.R | 42 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/difMH_edited.R | 1 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/difRaju_edited.R | 1 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/difSIBTEST_edited.R | 1 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/fa_parallel.R | 34 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/gDisrim.R | 16 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/ggWrightMap.R | 32 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/onAttach.R | 4 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/plotAdjacent.R | 6 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/plotCumulative.R | 27 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/plotDIFLogistic.R | 41 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/plotDIFirt.R | 13 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/plotDistractorAnalysis.R | 20 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/plotMultinomial.R | 10 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/plot_corr.R | 19 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/recode_nr.R | 3 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/R/startShinyItemAnalysis.R | 113 +- ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/README.md | 58 - ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/build/partial.rdb |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/AIBS.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/AttitudesExpulsion.rda |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/BFI2.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/CZmatura.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/CZmaturaS.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/HCI.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/HCIdata.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/HCIgrads.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/HCIkey.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/HCIprepost.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/HCItest.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/HCItestretest.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/HeightInventory.rda |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/LearningToLearn.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/MSclinical.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/NIH.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/TestAnxietyCor.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/dataMedical.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/dataMedicalgraded.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/dataMedicalkey.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/data/dataMedicaltest.rda |binary ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/inst/ShinyItemAnalysis |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/AIBS.Rd | 2 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/AttitudesExpulsion.Rd |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/BFI2.Rd | 2 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/CZmatura.Rd | 9 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/CZmaturaS.Rd | 15 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/DDplot.Rd | 1 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/HCI.Rd | 16 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/HCIdata.Rd | 4 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/HCIgrads.Rd | 2 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/HCIkey.Rd | 2 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/HCIprepost.Rd | 2 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/HCItest.Rd | 6 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/HCItestretest.Rd | 4 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/HeightInventory.Rd |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/ICCrestricted.Rd | 3 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/ItemAnalysis.Rd | 21 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/LearningToLearn.Rd | 30 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/MSclinical.Rd | 2 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/NIH.Rd | 2 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/ShinyItemAnalysis-package.Rd | 46 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/TestAnxietyCor.Rd | 2 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/cronbach_alpha.Rd |only ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/dataMedical.Rd | 22 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/dataMedicalgraded.Rd | 22 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/dataMedicalkey.Rd | 22 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/dataMedicaltest.Rd | 22 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/fa_parallel.Rd | 19 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/gDiscrim.Rd | 15 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/ggWrightMap.Rd | 19 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/plotAdjacent.Rd | 4 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/plotCumulative.Rd | 15 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/plotDIFLogistic.Rd | 29 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/plotDIFirt.Rd | 7 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/plotDistractorAnalysis.Rd | 16 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/plotMultinomial.Rd | 7 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/plot_corr.Rd | 9 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/recode_nr.Rd | 3 ShinyItemAnalysis-1.4.0/ShinyItemAnalysis/man/startShinyItemAnalysis.Rd | 151 +++ 127 files changed, 1004 insertions(+), 766 deletions(-)
More information about ShinyItemAnalysis at CRAN
Permanent link
Title: Connect R with MOA for Massive Online Analysis
Description: Connect R with MOA (Massive Online Analysis -
<https://moa.cms.waikato.ac.nz>) to build classification models and
regression models on streaming data or out-of-RAM data.
Also streaming recommendation models are made available.
Author: Jan Wijffels [aut, cre],
BNOSAC [cph]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between RMOA versions 1.0.1 dated 2018-09-22 and 1.0.2 dated 2021-09-27
DESCRIPTION | 12 MD5 | 22 - R/AAA.R | 2 R/Classification.R | 592 +++++++++++++++++++++---------------------- R/MOAinstances.R | 238 ++++++++--------- R/Recommenders.R | 4 R/utils.R | 86 +++--- build/vignette.rds |binary inst/CITATION | 30 +- inst/NEWS | 7 inst/TODO | 2 inst/doc/packageShowCase.pdf |binary 12 files changed, 501 insertions(+), 494 deletions(-)
Title: Estimate Permutation p-Values for Random Forest Importance
Metrics
Description: Estimate significance of importance metrics
for a Random Forest model by permuting the response
variable. Produces null distribution of importance
metrics for each predictor variable and p-value of
observed. Provides summary and visualization functions for 'randomForest'
results.
Author: Eric Archer [aut, cre]
Maintainer: Eric Archer <eric.archer@noaa.gov>
Diff between rfPermute versions 2.2 dated 2021-05-22 and 2.5 dated 2021-09-27
rfPermute-2.2/rfPermute/R/classConfInt.R |only rfPermute-2.2/rfPermute/R/exptdErrRate.R |only rfPermute-2.2/rfPermute/R/impHeatmap.R |only rfPermute-2.2/rfPermute/R/plot.rp.importance.R |only rfPermute-2.2/rfPermute/R/plotConfMat.R |only rfPermute-2.2/rfPermute/R/plotImpVarDist.R |only rfPermute-2.2/rfPermute/R/plotOOBtimes.R |only rfPermute-2.2/rfPermute/R/plotRFtrace.R |only rfPermute-2.2/rfPermute/R/proximityPlot.R |only rfPermute-2.2/rfPermute/R/rfPermute.default.R |only rfPermute-2.2/rfPermute/R/rfPermute.formula.R |only rfPermute-2.2/rfPermute/R/rp.combine.R |only rfPermute-2.2/rfPermute/R/rp.importance.R |only rfPermute-2.2/rfPermute/man/classConfInt.Rd |only rfPermute-2.2/rfPermute/man/exptdErrRate.Rd |only rfPermute-2.2/rfPermute/man/impHeatmap.Rd |only rfPermute-2.2/rfPermute/man/plot.rp.importance.Rd |only rfPermute-2.2/rfPermute/man/plotConfMat.Rd |only rfPermute-2.2/rfPermute/man/plotImpVarDist.Rd |only rfPermute-2.2/rfPermute/man/plotOOBtimes.Rd |only rfPermute-2.2/rfPermute/man/plotRFtrace.Rd |only rfPermute-2.2/rfPermute/man/proximityPlot.Rd |only rfPermute-2.2/rfPermute/man/rp.combine.Rd |only rfPermute-2.2/rfPermute/man/rp.importance.Rd |only rfPermute-2.5/rfPermute/DESCRIPTION | 21 + rfPermute-2.5/rfPermute/MD5 | 85 +++--- rfPermute-2.5/rfPermute/NAMESPACE | 36 +- rfPermute-2.5/rfPermute/R/balancedSampsize.R |only rfPermute-2.5/rfPermute/R/casePredictions.R | 23 + rfPermute-2.5/rfPermute/R/classPriors.R |only rfPermute-2.5/rfPermute/R/cleanRFdata.R | 3 rfPermute-2.5/rfPermute/R/combineRP.R |only rfPermute-2.5/rfPermute/R/confusionMatrix.R | 132 ++++++++-- rfPermute-2.5/rfPermute/R/importance.R |only rfPermute-2.5/rfPermute/R/internals.R | 14 - rfPermute-2.5/rfPermute/R/pctCorrect.R | 16 - rfPermute-2.5/rfPermute/R/plotImpPreds.R |only rfPermute-2.5/rfPermute/R/plotInbag.R | 78 ++++-- rfPermute-2.5/rfPermute/R/plotNull.R | 81 +++--- rfPermute-2.5/rfPermute/R/plotPredictedProbs.R | 12 rfPermute-2.5/rfPermute/R/plotProximity.R |only rfPermute-2.5/rfPermute/R/plotTrace.R |only rfPermute-2.5/rfPermute/R/plotVotes.R | 17 - rfPermute-2.5/rfPermute/R/rfPermute.R | 275 +++++++++++++++++++--- rfPermute-2.5/rfPermute/R/rfPermute_package.R |only rfPermute-2.5/rfPermute/R/summary.R |only rfPermute-2.5/rfPermute/README.md | 88 +++---- rfPermute-2.5/rfPermute/inst |only rfPermute-2.5/rfPermute/man/balancedSampsize.Rd |only rfPermute-2.5/rfPermute/man/casePredictions.Rd | 15 - rfPermute-2.5/rfPermute/man/classPriors.Rd |only rfPermute-2.5/rfPermute/man/combineRP.Rd |only rfPermute-2.5/rfPermute/man/confusionMatrix.Rd | 38 ++- rfPermute-2.5/rfPermute/man/importance.Rd |only rfPermute-2.5/rfPermute/man/pctCorrect.Rd | 10 rfPermute-2.5/rfPermute/man/plotImpPreds.Rd |only rfPermute-2.5/rfPermute/man/plotInbag.Rd | 38 ++- rfPermute-2.5/rfPermute/man/plotNull.Rd | 16 - rfPermute-2.5/rfPermute/man/plotPredictedProbs.Rd | 8 rfPermute-2.5/rfPermute/man/plotProximity.Rd |only rfPermute-2.5/rfPermute/man/plotTrace.Rd |only rfPermute-2.5/rfPermute/man/plotVotes.Rd | 8 rfPermute-2.5/rfPermute/man/rfPermute.Rd | 82 +++--- rfPermute-2.5/rfPermute/man/rfPermute_package.Rd |only rfPermute-2.5/rfPermute/man/summary.Rd |only 65 files changed, 754 insertions(+), 342 deletions(-)
Title: Read Rectangular Text Data
Description: The goal of 'readr' is to provide a fast and
friendly way to read rectangular data (like 'csv', 'tsv', and 'fwf').
It is designed to flexibly parse many types of data found in the wild,
while still cleanly failing when data unexpectedly changes.
Author: Hadley Wickham [aut],
Jim Hester [aut, cre],
Romain Francois [ctb],
RStudio [cph, fnd],
https://github.com/mandreyel/ [cph] (mio library),
Jukka Jylänki [ctb, cph] (grisu3 implementation),
Mikkel Jørgensen [ctb, cph] (grisu3 implementation)
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between readr versions 2.0.1 dated 2021-08-10 and 2.0.2 dated 2021-09-27
DESCRIPTION | 6 +-- MD5 | 52 +++++++++++++-------------- NEWS.md | 10 ++++- R/date-symbols.R | 4 +- R/rds.R | 5 +- R/read_delim.R | 21 +++++------ R/tokenizer.R | 4 +- R/type_convert.R | 11 ++++- build/readr.pdf |binary inst/WORDLIST | 1 inst/doc/locales.html | 70 ++++++++++++++++--------------------- inst/doc/readr.html | 9 ++-- man/Tokenizers.Rd | 4 +- man/date_names.Rd | 4 +- man/melt_delim.Rd | 4 +- man/melt_delim_chunked.Rd | 4 +- man/read_delim.Rd | 22 +++++------ man/read_delim_chunked.Rd | 14 +++---- man/read_fwf.Rd | 14 +++---- man/read_lines.Rd | 6 +-- man/read_log.Rd | 10 ++--- man/read_rds.Rd | 3 + man/read_table.Rd | 10 ++--- man/spec_delim.Rd | 23 ++++++------ man/type_convert.Rd | 6 ++- tests/testthat/test-read-lines.R | 2 - tests/testthat/test-type-convert.R | 18 +++++++++ 27 files changed, 187 insertions(+), 150 deletions(-)
Title: Inference of Linear Mixed Models Through MM Algorithm
Description: The main function MMEst() performs (Restricted) Maximum Likelihood in a variance component mixed models using a Min-Max (MM) algorithm (Hunter, D. R., & Lange, K. (2004) <doi:10.1198/0003130042836>).
Author: Fabien Laporte, Tristan Mary-Huard
Maintainer: Fabien Laporte <fabien.laporte@outlook.com>
Diff between MM4LMM versions 2.0.2 dated 2020-03-03 and 2.1.0 dated 2021-09-27
DESCRIPTION | 12 MD5 | 16 NAMESPACE | 1 R/MM4LMM-internal.R | 1630 +++++++++++++++++++------------------- R/MMVcov.R |only data/QTLDetectionExample.rda |binary data/VarianceComponentExample.rda |binary man/MMEst.Rd | 374 ++++---- man/MMVcov.Rd |only man/VarianceComponentExample.Rd | 100 +- 10 files changed, 1068 insertions(+), 1065 deletions(-)
Title: Tools to Support Relative Importance Analysis
Description: Provides tools that support relative importance analysis focusing
on dominance analysis. Dominance analysis is a methodology for
determining the relative importance of predictors/features/independent
variables (Azen, R., & Budescu, D. V. (2003) <doi:10.1037/1082-989X.8.2.129>;
Groemping, U. (2007) <doi:10.1198/000313007X188252>)
as well as parameter estimates (Luchman, J. N, Lei, X., & Kaplan, S.
(2020) <doi:10.47263/JASEM.4(2)02>).
These tools are intended to extend relative importance analysis to,
effectively, any statistical or machine learning function as defined or
desired by the user-especially those where the user wants to use custom
importance/fit statistic or modeling function.
Author: Joseph Luchman [aut, cre] (<https://orcid.org/0000-0002-8886-9717>)
Maintainer: Joseph Luchman <jluchman@gmail.com>
Diff between domir versions 0.1.0 dated 2021-08-09 and 0.2.0 dated 2021-09-27
DESCRIPTION | 20 ++- MD5 | 24 +++- NEWS.md | 47 ++++++--- R/domin.r | 260 +++++++++++++++++++++------------------------------ R/domir-package.r | 28 ----- README.md | 13 +- build |only inst |only man/domin.Rd | 63 ++++++++---- man/domir-package.Rd | 32 ------ man/print.domin.Rd | 18 +-- tests |only vignettes |only 13 files changed, 234 insertions(+), 271 deletions(-)
Title: Convert Vietnamese Encodings
Description: Conversion of characters from unsupported Vietnamese character encodings to Unicode characters. These Vietnamese encodings (TCVN3, VISCII, VPS) are not natively supported in R and lead to printing of wrong characters and garbled text (mojibake). This package fixes that problem and provides readable output with the correct Unicode characters (with or without diacritics).
Author: Juergen Niedballa [aut, cre] (<https://orcid.org/0000-0002-9187-2116>),
An The Truong Nguyen [ctb]
Maintainer: Juergen Niedballa <niedballa@izw-berlin.de>
Diff between vietnameseConverter versions 0.3.0 dated 2021-09-22 and 0.3.1 dated 2021-09-27
DESCRIPTION | 6 ++--- MD5 | 15 +++++++------- NEWS |only R/decodeVN.R | 20 +++++++++++++++---- inst/doc/vietnameseConverter.R | 12 +++++------ inst/doc/vietnameseConverter.Rmd | 12 +++++------ inst/doc/vietnameseConverter.html | 40 +++++++++++++++++++------------------- tests/testthat/test_decodeVN.R | 16 +++++++++++++++ vignettes/vietnameseConverter.Rmd | 12 +++++------ 9 files changed, 81 insertions(+), 52 deletions(-)
More information about vietnameseConverter at CRAN
Permanent link
Title: Interface Between R and the OpenStreetMap-Based Routing Service
OSRM
Description: An interface between R and the 'OSRM' API. 'OSRM' is a routing
service based on 'OpenStreetMap' data. See <http://project-osrm.org/> for more
information. This package allows to compute routes, trips, isochrones and
travel distances matrices (travel time and kilometric distance).
Author: Timothée Giraud [cre, aut] (<https://orcid.org/0000-0002-1932-3323>),
Robin Cura [ctb],
Matthieu Viry [ctb],
Robin Lovelace [ctb] (<https://orcid.org/0000-0001-5679-6536>)
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between osrm versions 3.4.1 dated 2021-03-19 and 3.5.0 dated 2021-09-27
osrm-3.4.1/osrm/data |only osrm-3.4.1/osrm/man/apotheke.df.Rd |only osrm-3.4.1/osrm/man/apotheke.sf.Rd |only osrm-3.4.1/osrm/man/apotheke.sp.Rd |only osrm-3.5.0/osrm/DESCRIPTION | 15 +--- osrm-3.5.0/osrm/MD5 | 50 ++++++------- osrm-3.5.0/osrm/NAMESPACE | 1 osrm-3.5.0/osrm/NEWS | 15 ++++ osrm-3.5.0/osrm/R/osrmIsochrone.R | 30 ++++---- osrm-3.5.0/osrm/R/osrmRoute.R | 51 ++++--------- osrm-3.5.0/osrm/R/osrmTable.R | 38 +++++----- osrm-3.5.0/osrm/R/osrmTrip.R | 21 +++-- osrm-3.5.0/osrm/R/package.R | 38 ++-------- osrm-3.5.0/osrm/R/utils.R | 22 +++++- osrm-3.5.0/osrm/R/zzz.R | 3 osrm-3.5.0/osrm/README.md | 77 ++++++++++++--------- osrm-3.5.0/osrm/inst/csv |only osrm-3.5.0/osrm/inst/gpkg |only osrm-3.5.0/osrm/inst/tinytest/test_osrmIsochrone.R | 8 -- osrm-3.5.0/osrm/inst/tinytest/test_osrmRoute.R | 15 +--- osrm-3.5.0/osrm/inst/tinytest/test_osrmTable.R | 40 ++++------ osrm-3.5.0/osrm/inst/tinytest/test_osrmTrip.R | 14 +-- osrm-3.5.0/osrm/man/osrm.Rd | 10 ++ osrm-3.5.0/osrm/man/osrmIsochrone.Rd | 13 +-- osrm-3.5.0/osrm/man/osrmIsometric.Rd | 11 +-- osrm-3.5.0/osrm/man/osrmRoute.Rd | 27 ++----- osrm-3.5.0/osrm/man/osrmTable.Rd | 21 +++-- osrm-3.5.0/osrm/man/osrmTrip.Rd | 15 +--- osrm-3.5.0/osrm/tests/tinytest.R | 2 29 files changed, 270 insertions(+), 267 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.8.1 dated 2021-09-20 and 0.8.2 dated 2021-09-27
DESCRIPTION | 8 - MD5 | 18 ++-- R/Boost.R | 4 R/Multivariate_Regression.R | 6 - R/Regression.R | 8 - R/Stack.R | 3 R/dy_d_wrt.R | 6 - README.md | 4 inst/doc/NNSvignette_Classification.html | 85 +++++++++----------- inst/doc/NNSvignette_Clustering_and_Regression.html | 16 +-- 10 files changed, 78 insertions(+), 80 deletions(-)
More information about ICvectorfields at CRAN
Permanent link
Title: Utilities for the Forest Research Institute of the State
Baden-Wuerttemberg
Description: Miscellaneous utilities, tools and helper
functions for finding and searching files on disk, searching for and
removing R objects from the workspace.
These are utilities for packages
<https://CRAN.R-project.org/package=cleanr>,
<https://CRAN.R-project.org/package=document>,
<https://CRAN.R-project.org/package=fakemake>,
<https://CRAN.R-project.org/package=packager> and
<https://CRAN.R-project.org/package=rasciidoc>.
Does not import or depend on any third party package, but on core R
only (i.e. it may depend on packages with priority 'base').
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between fritools versions 2.2.1 dated 2021-07-31 and 2.3.0 dated 2021-09-27
DESCRIPTION | 6 ++-- MD5 | 39 ++++++++++++++++---------- NAMESPACE | 3 ++ NEWS.md | 6 ++++ R/convert_umlauts_to_ascii.R | 1 R/is_difftime_less.R |only R/is_files_current.R |only R/is_valid_primary_key.R |only R/split_code_file.R | 2 - inst/NEWS.rd | 8 +++++ inst/runit_tests/runit-csv.R | 4 +- inst/runit_tests/runit-is_difftime_less.R |only inst/runit_tests/runit-is_files_current.R |only inst/runit_tests/runit-is_valid_primary_key.R |only inst/tinytest/test_fritools.R | 23 +++++++++++++++ man/file_modified_last.Rd | 1 man/find_files.Rd | 1 man/get_unique_string.Rd | 1 man/is_difftime_less.Rd |only man/is_files_current.Rd |only man/is_valid_primary_key.Rd |only man/paths.Rd | 1 man/search_files.Rd | 1 man/split_code_file.Rd | 3 +- man/touch.Rd | 1 25 files changed, 79 insertions(+), 22 deletions(-)
Title: Composite Indicators Functions
Description: Contains functions to enhance approaches to the Composite Indicators methods, focusing, in particular, on the normalisation and weighting-aggregation steps.
Author: Francesco Vidoli, Elisa Fusco
Maintainer: Francesco Vidoli <fvidoli@gmail.com>
Diff between Compind versions 2.2 dated 2021-04-09 and 2.3 dated 2021-09-27
DESCRIPTION | 8 ++-- MD5 | 10 ++--- NEWS | 8 +++- build/vignette.rds |binary inst/doc/Compind_vignette.pdf |binary man/ci_smaa_constr.Rd | 77 ++++++++++++++++++++++++++++++++++++++++-- 6 files changed, 90 insertions(+), 13 deletions(-)
Title: TH's Data Archive
Description: Contains data sets used in other packages Torsten Hothorn
maintains.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between TH.data versions 1.0-10 dated 2019-01-21 and 1.1-0 dated 2021-09-27
DESCRIPTION | 14 ++++++++------ MD5 | 17 +++++++++++++---- build |only data/geyser.rda |binary data/mammoexp.rda |binary inst/doc |only inst/rda/bloodloss.rda |only man/bodyfat.Rd | 2 +- vignettes |only 9 files changed, 22 insertions(+), 11 deletions(-)
Title: Supervised Clustering of Predictor Variables Such as Genes
Description: Methodology for supervised grouping aka "clustering" of
potentially many predictor variables, such as genes etc, implementing
algorithms 'PELORA' and 'WILMA'.
Author: Marcel Dettling <marcel.dettling@zhaw.ch> and Martin Maechler
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between supclust versions 1.1-0 dated 2020-10-15 and 1.1-1 dated 2021-09-27
ChangeLog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/partial.rdb |binary data/leukemia.rda |binary src/init.c | 10 +++++----- src/pelora.c | 35 ++++++++++++++++++++--------------- 7 files changed, 40 insertions(+), 30 deletions(-)
Title: Sample Size and Power Calculations for Case-Control Studies
Description: To determine sample size or power for case-control studies to be analyzed using logistic regression.
Author: Mitchell H. Gail
Maintainer: William Wheeler <WheelerB@imsweb.com>
Diff between samplesizelogisticcasecontrol versions 0.0.6 dated 2017-02-04 and 2.0.0 dated 2021-09-27
samplesizelogisticcasecontrol-0.0.6/samplesizelogisticcasecontrol/man/sampleSize-package.Rd |only samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/DESCRIPTION | 12 +-- samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/MD5 | 27 +++++--- samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/NAMESPACE | 3 samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/R/power_binary.R |only samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/R/power_common.R |only samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/R/power_contF.R |only samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/R/power_data.R |only samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/R/power_pmf.R |only samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/R/sampleSize_common.R | 9 ++ samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/build/vignette.rds |binary samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/inst/doc/vignette.R | 33 ++++++++-- samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/inst/doc/vignette.Rnw | 30 +++++++-- samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/inst/doc/vignette.pdf |binary samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/man/power_binary.Rd |only samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/man/power_continuous.Rd |only samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/man/power_data.Rd |only samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/man/power_ordinal.Rd |only samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/man/samplesizelogisticcasecontrol-package.Rd |only samplesizelogisticcasecontrol-2.0.0/samplesizelogisticcasecontrol/vignettes/vignette.Rnw | 30 +++++++-- 20 files changed, 110 insertions(+), 34 deletions(-)
More information about samplesizelogisticcasecontrol at CRAN
Permanent link
Title: Download Map Data from GISCO API - Eurostat
Description: Tools to download data from the GISCO (Geographic Information
System of the Commission) Eurostat database
<https://ec.europa.eu/eurostat/web/gisco>. Global and European map
data available. This package is in no way officially related to or
endorsed by Eurostat.
Author: Diego Hernangómez [aut, cre, cph]
(<https://orcid.org/0000-0001-8457-4658>, rOpenGov),
EuroGeographics [cph] (for the administrative boundaries.),
Vincent Arel-Bundock [cph] (<https://orcid.org/0000-0003-2042-7063>,
for the gisco_countrycode dataset.)
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>
Diff between giscoR versions 0.2.4 dated 2021-04-13 and 0.3.0 dated 2021-09-27
giscoR-0.2.4/giscoR/R/gisco_data.R |only giscoR-0.2.4/giscoR/R/gisco_get.R |only giscoR-0.2.4/giscoR/inst/pkgdown |only giscoR-0.2.4/giscoR/inst/schemaorg.json |only giscoR-0.2.4/giscoR/inst/tinytest |only giscoR-0.2.4/giscoR/tests/tinytest.R |only giscoR-0.3.0/giscoR/DESCRIPTION | 50 +-- giscoR-0.3.0/giscoR/MD5 | 127 ++++--- giscoR-0.3.0/giscoR/NAMESPACE | 2 giscoR-0.3.0/giscoR/NEWS.md | 75 ++-- giscoR-0.3.0/giscoR/R/data.R |only giscoR-0.3.0/giscoR/R/giscoR-package.R | 13 giscoR-0.3.0/giscoR/R/gisco_attributions.R | 3 giscoR-0.3.0/giscoR/R/gisco_bulk_download.R | 23 - giscoR-0.3.0/giscoR/R/gisco_cache.R |only giscoR-0.3.0/giscoR/R/gisco_clear_cache.R |only giscoR-0.3.0/giscoR/R/gisco_get_airports.R | 60 +-- giscoR-0.3.0/giscoR/R/gisco_get_coastallines.R |only giscoR-0.3.0/giscoR/R/gisco_get_countries.R |only giscoR-0.3.0/giscoR/R/gisco_get_grid.R | 99 ++++- giscoR-0.3.0/giscoR/R/gisco_get_healthcare.R | 33 + giscoR-0.3.0/giscoR/R/gisco_get_lau.R |only giscoR-0.3.0/giscoR/R/gisco_get_nuts.R |only giscoR-0.3.0/giscoR/R/gisco_get_units.R | 58 +-- giscoR-0.3.0/giscoR/R/gisco_get_urban_audit.R |only giscoR-0.3.0/giscoR/R/sysdata.rda |binary giscoR-0.3.0/giscoR/R/utils_downloads.R | 47 +- giscoR-0.3.0/giscoR/README.md | 305 ++++++++++++------ giscoR-0.3.0/giscoR/build/vignette.rds |binary giscoR-0.3.0/giscoR/data/gisco_coastallines.rda |binary giscoR-0.3.0/giscoR/data/gisco_countries.rda |binary giscoR-0.3.0/giscoR/data/gisco_countrycode.rda |binary giscoR-0.3.0/giscoR/data/gisco_db.rda |binary giscoR-0.3.0/giscoR/data/gisco_nuts.rda |binary giscoR-0.3.0/giscoR/data/tgs00026.rda |binary giscoR-0.3.0/giscoR/inst/CITATION | 23 - giscoR-0.3.0/giscoR/inst/WORDLIST |only giscoR-0.3.0/giscoR/inst/doc/giscoR.R | 246 +++++++++----- giscoR-0.3.0/giscoR/inst/doc/giscoR.Rmd | 318 ++++++++++--------- giscoR-0.3.0/giscoR/inst/doc/giscoR.html | 365 ++++++++++++---------- giscoR-0.3.0/giscoR/man/figures/logo.png |binary giscoR-0.3.0/giscoR/man/giscoR-package.Rd | 8 giscoR-0.3.0/giscoR/man/gisco_attributions.Rd | 2 giscoR-0.3.0/giscoR/man/gisco_bulk_download.Rd | 46 ++ giscoR-0.3.0/giscoR/man/gisco_clear_cache.Rd |only giscoR-0.3.0/giscoR/man/gisco_coastallines.Rd | 39 +- giscoR-0.3.0/giscoR/man/gisco_countries.Rd | 13 giscoR-0.3.0/giscoR/man/gisco_countrycode.Rd | 9 giscoR-0.3.0/giscoR/man/gisco_db.Rd | 2 giscoR-0.3.0/giscoR/man/gisco_get.Rd | 291 +++-------------- giscoR-0.3.0/giscoR/man/gisco_get_airports.Rd | 65 +-- giscoR-0.3.0/giscoR/man/gisco_get_coastallines.Rd |only giscoR-0.3.0/giscoR/man/gisco_get_grid.Rd | 114 +++++- giscoR-0.3.0/giscoR/man/gisco_get_healthcare.Rd | 59 +++ giscoR-0.3.0/giscoR/man/gisco_get_lau.Rd |only giscoR-0.3.0/giscoR/man/gisco_get_nuts.Rd |only giscoR-0.3.0/giscoR/man/gisco_get_units.Rd | 86 ++--- giscoR-0.3.0/giscoR/man/gisco_get_urban_audit.Rd |only giscoR-0.3.0/giscoR/man/gisco_nuts.Rd | 18 - giscoR-0.3.0/giscoR/man/gisco_set_cache_dir.Rd |only giscoR-0.3.0/giscoR/man/tgs00026.Rd | 2 giscoR-0.3.0/giscoR/tests/testthat |only giscoR-0.3.0/giscoR/tests/testthat.R |only giscoR-0.3.0/giscoR/vignettes/choro.png |only giscoR-0.3.0/giscoR/vignettes/giscoR.Rmd | 318 ++++++++++--------- 65 files changed, 1635 insertions(+), 1284 deletions(-)
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available. The methods are described in
Hothorn et al. (2006) <doi:10.1198/106186006X133933>,
Zeileis et al. (2008) <doi:10.1198/106186008X319331> and
Strobl et al. (2007) <doi:10.1186/1471-2105-8-25>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>),
Kurt Hornik [aut],
Carolin Strobl [aut],
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.3-8 dated 2021-08-23 and 1.3-9 dated 2021-09-27
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- build/partial.rdb |binary inst/NEWS | 10 ++++++++++ inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary src/Utils.c | 10 +++++----- src/party.h | 9 +++++++-- 8 files changed, 33 insertions(+), 18 deletions(-)
Title: Rcpp Interface to PostgreSQL
Description: Fully DBI-compliant Rcpp-backed interface to
PostgreSQL <https://www.postgresql.org/>, an open-source relational
database.
Author: Hadley Wickham [aut],
Jeroen Ooms [aut],
Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
RStudio [cph],
R Consortium [fnd],
Tomoaki Nishiyama [ctb] (Code for encoding vectors into strings derived
from RPostgreSQL)
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between RPostgres versions 1.4.0 dated 2021-09-26 and 1.4.1 dated 2021-09-27
DESCRIPTION | 8 - MD5 | 10 - NEWS.md | 7 + inst/doc/work-queue.R | 314 +++++++++++++++++++++++------------------------ inst/doc/work-queue.html | 277 +++++++++++++++++++++-------------------- src/PqResultImpl.cpp | 3 6 files changed, 321 insertions(+), 298 deletions(-)
Title: Basic Robust Statistics
Description: "Essential" Robust Statistics.
Tools allowing to analyze data with robust methods. This includes
regression methodology including model selections and multivariate
statistics where we strive to cover the book "Robust Statistics,
Theory and Methods" by 'Maronna, Martin and Yohai'; Wiley 2006.
Author: Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Peter Rousseeuw [ctb] (Qn and Sn),
Christophe Croux [ctb] (Qn and Sn),
Valentin Todorov [aut] (most robust Cov),
Andreas Ruckstuhl [aut] (nlrob, anova, glmrob),
Matias Salibian-Barrera [aut] (lmrob orig.),
Tobias Verbeke [ctb, fnd] (mc, adjbox),
Manuel Koller [aut] (mc, lmrob, psi-func.),
Eduardo L. T. Conceicao [aut] (MM-, tau-, CM-, and MTL- nlrob),
Maria Anna di Palma [ctb] (initial version of Comedian)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between robustbase versions 0.93-8 dated 2021-06-02 and 0.93-9 dated 2021-09-27
DESCRIPTION | 13 +- MD5 | 46 +++++---- R/BYlogreg.R | 5 R/OGK.R | 2 R/qnsn.R | 15 ++ TODO | 4 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 21 ++++ inst/doc/fastMcd-kmini.pdf |binary inst/doc/lmrob_simulation.pdf |binary inst/doc/psi_functions.pdf |binary inst/po/de |only inst/po/en@quot/LC_MESSAGES/R-robustbase.mo |binary inst/po/en@quot/LC_MESSAGES/robustbase.mo |only man/Qn.Rd | 11 +- man/Sn.Rd | 9 + man/scaleTau2.Rd | 7 + po/R-de.po |only po/R-robustbase.pot | 142 +++++++++++++++++++--------- po/de.po |only po/robustbase.pot |only src/lmrob.c | 101 +++++++++---------- src/robustbase.h | 2 src/rowMedians.c | 13 +- src/rowMedians_TYPE-template.h | 5 26 files changed, 253 insertions(+), 143 deletions(-)
Title: Whole Genome Phylogenies Using Sequence Environments
Description: Contains utilities for the analysis of protein sequences in a phylogenetic context.
Allows the generation of phylogenetic trees base on protein sequences in an alignment-independent way.
Two different methods have been implemented. One approach is based on the frequency analysis of n-grams,
previously described in Stuart et al. (2002) <doi:10.1093/bioinformatics/18.1.100>. The other approach is based on the species-specific neighborhood preference around amino acids. Features include the conversion of a protein set into a vector
reflecting these neighborhood preferences, pairwise distances (dissimilarity) between these vectors,
and the generation of trees based on these distance matrices.
Author: Juan Carlos Aledo [aut, cre] (<https://orcid.org/0000-0002-3497-9945>)
Maintainer: Juan Carlos Aledo <caledo@uma.es>
Diff between EnvNJ versions 0.1.2 dated 2021-05-31 and 0.1.3 dated 2021-09-27
EnvNJ-0.1.2/EnvNJ/R/encoding.R |only EnvNJ-0.1.2/EnvNJ/tests/testthat/test_encoding.R |only EnvNJ-0.1.3/EnvNJ/DESCRIPTION | 10 - EnvNJ-0.1.3/EnvNJ/MD5 | 86 +++++++-- EnvNJ-0.1.3/EnvNJ/NAMESPACE | 21 ++ EnvNJ-0.1.3/EnvNJ/NEWS |only EnvNJ-0.1.3/EnvNJ/R/ancillary.R |only EnvNJ-0.1.3/EnvNJ/R/dataprep.R |only EnvNJ-0.1.3/EnvNJ/R/envcoding.R |only EnvNJ-0.1.3/EnvNJ/R/envfas.R |only EnvNJ-0.1.3/EnvNJ/R/envnj.R | 152 +++++++++++------ EnvNJ-0.1.3/EnvNJ/R/metrics.R |only EnvNJ-0.1.3/EnvNJ/R/msa.R | 5 EnvNJ-0.1.3/EnvNJ/R/ncdnj.R |only EnvNJ-0.1.3/EnvNJ/R/ngram.R | 172 +++---------------- EnvNJ-0.1.3/EnvNJ/man/aa.at.Rd | 13 - EnvNJ-0.1.3/EnvNJ/man/aa.comp.Rd | 2 EnvNJ-0.1.3/EnvNJ/man/aaf.Rd | 3 EnvNJ-0.1.3/EnvNJ/man/cos2dis.Rd |only EnvNJ-0.1.3/EnvNJ/man/d.phy2df.Rd |only EnvNJ-0.1.3/EnvNJ/man/df2fasta.Rd |only EnvNJ-0.1.3/EnvNJ/man/env.extract.Rd | 19 -- EnvNJ-0.1.3/EnvNJ/man/env.fasta.Rd |only EnvNJ-0.1.3/EnvNJ/man/env.matrices.Rd | 2 EnvNJ-0.1.3/EnvNJ/man/env.sp.Rd | 8 EnvNJ-0.1.3/EnvNJ/man/envfascpp.Rd |only EnvNJ-0.1.3/EnvNJ/man/envnj.Rd | 8 EnvNJ-0.1.3/EnvNJ/man/fastaconc.Rd |only EnvNJ-0.1.3/EnvNJ/man/metrics.Rd |only EnvNJ-0.1.3/EnvNJ/man/ncd.Rd |only EnvNJ-0.1.3/EnvNJ/man/ncdnj.Rd |only EnvNJ-0.1.3/EnvNJ/man/ngraMatrix.Rd | 6 EnvNJ-0.1.3/EnvNJ/man/ngram.Rd | 8 EnvNJ-0.1.3/EnvNJ/man/otu.space.Rd | 6 EnvNJ-0.1.3/EnvNJ/man/otu.vector.Rd | 10 - EnvNJ-0.1.3/EnvNJ/man/svdgram.Rd | 2 EnvNJ-0.1.3/EnvNJ/man/vcos.Rd | 4 EnvNJ-0.1.3/EnvNJ/man/vdis.Rd | 2 EnvNJ-0.1.3/EnvNJ/man/vect2tree.Rd |only EnvNJ-0.1.3/EnvNJ/man/vtree.Rd | 6 EnvNJ-0.1.3/EnvNJ/tests/testthat/Rplots.pdf |binary EnvNJ-0.1.3/EnvNJ/tests/testthat/data_t |only EnvNJ-0.1.3/EnvNJ/tests/testthat/test_ancillary.R |only EnvNJ-0.1.3/EnvNJ/tests/testthat/test_dataprep.R |only EnvNJ-0.1.3/EnvNJ/tests/testthat/test_envcoding.R |only EnvNJ-0.1.3/EnvNJ/tests/testthat/test_envfas.R |only EnvNJ-0.1.3/EnvNJ/tests/testthat/test_envnj.R | 191 +++++++++++++++++++++- EnvNJ-0.1.3/EnvNJ/tests/testthat/test_metrics.R |only EnvNJ-0.1.3/EnvNJ/tests/testthat/test_ncdnj.R |only EnvNJ-0.1.3/EnvNJ/tests/testthat/test_ngram.R | 67 +------ 50 files changed, 467 insertions(+), 336 deletions(-)
Title: Bias Reduction in Generalized Linear Models
Description: Estimation and inference from generalized linear models based on various methods for bias reduction and maximum penalized likelihood with powers of the Jeffreys prior as penalty. The 'brglmFit' fitting method can achieve reduction of estimation bias by solving either the mean bias-reducing adjusted score equations in Firth (1993) <doi:10.1093/biomet/80.1.27> and Kosmidis and Firth (2009) <doi:10.1093/biomet/asp055>, or the median bias-reduction adjusted score equations in Kenne et al. (2017) <doi:10.1093/biomet/asx046>, or through the direct subtraction of an estimate of the bias of the maximum likelihood estimator from the maximum likelihood estimates as in Cordeiro and McCullagh (1991) <https://www.jstor.org/stable/2345592>. See Kosmidis et al (2020) <doi:10.1007/s11222-019-09860-6> for more details. Estimation in all cases takes place via a quasi Fisher scoring algorithm, and S3 methods for the construction of of confidence intervals for the reduced-bias estimates are provided. In the special case of generalized linear models for binomial and multinomial responses (both ordinal and nominal), the adjusted score approaches to mean and media bias reduction have been found to return estimates with improved frequentist properties, that are also always finite, even in cases where the maximum likelihood estimates are infinite (e.g. complete and quasi-complete separation; see Kosmidis and Firth, 2020 <doi:10.1093/biomet/asaa052>, for a proof for mean bias reduction in logistic regression).
Author: Ioannis Kosmidis [aut, cre] (<https://orcid.org/0000-0003-1556-0302>),
Euloge Clovis Kenne Pagui [aut],
Kjell Konis [ctb],
Nicola Sartori [ctb]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between brglm2 versions 0.8.0 dated 2021-07-17 and 0.8.1 dated 2021-09-27
DESCRIPTION | 8 +-- MD5 | 41 +++++++++------ NAMESPACE | 1 NEWS.md | 18 ++++++ R/bracl.R | 4 + R/brglmControl.R | 8 +-- R/brglmFit.R | 95 ++++++++++++++++++++++++++++++++---- R/brmultinom.R | 15 +++-- R/brnb.R | 13 +---- R/utils.R | 15 +++++ build/partial.rdb |binary inst/WORDLIST | 71 +++++++++++++++------------ inst/doc/adjacent.html | 24 +++++++-- inst/doc/multinomial.html | 119 ++++++++++++++++++++++++++-------------------- inst/franscisco |only inst/maize-EckDaniel |only man/brglmControl.Rd | 8 +-- man/brglmFit.Rd | 18 +++--- man/brmultinom.Rd | 11 ++-- man/summary.brglmFit.Rd | 17 ++++++ 20 files changed, 328 insertions(+), 158 deletions(-)
Title: Analysis the Weather Data
Description: Functions are collected to analyse weather data for agriculture
purposes including to read weather records in multiple formats,
calculate extreme climate index.
Author: Bangyou Zheng [aut, cre]
Maintainer: Bangyou Zheng <bangyou.zheng@csiro.au>
Diff between weaana versions 0.1.0 dated 2021-09-23 and 0.1.1 dated 2021-09-27
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NAMESPACE | 1 + R/readWeatherRecords.r | 2 +- R/writeWeatherRecords.R | 1 + README.md | 9 ++++++++- 6 files changed, 19 insertions(+), 10 deletions(-)
Title: Thermal Image Analysis
Description: A collection of functions and routines for inputting thermal
image video files, plotting and converting binary raw data into estimates of
temperature. First published 2015-03-26. Written primarily for research purposes
in biological applications of thermal images. v1 included the base calculations
for converting thermal image binary values to temperatures. v2 included additional
equations for providing heat transfer calculations and an import function for thermal
image files (v2.2.3 fixed error importing thermal image to windows OS). v3. Added numerous
functions for converting thermal image, videos, rewriting and exporting.
v3.1. Added new functions to convert files. v3.2. Fixed the various functions related to finding frame times.
v4.0. fixed an error in atmospheric attenuation constants, affecting raw2temp and temp2raw functions.
Recommend update for use with long distance calculations. v.4.1.3 changed to frameLocates to reflect change to as.character() to format().
Author: Glenn J. Tattersall
Maintainer: Glenn J. Tattersall <gtatters@brocku.ca>
Diff between Thermimage versions 4.0.1 dated 2019-11-30 and 4.1.3 dated 2021-09-27
DESCRIPTION | 14 +++++++------- MD5 | 20 ++++++++++---------- R/convertflirVID.R | 29 ++++++++++++++++++----------- R/frameLocates.R | 4 ++-- R/readflirJPG.R | 6 ++++++ inst/perl/split.pl | 4 +++- man/convertflirVID.Rd | 24 ++++++++++++++++++++---- man/diffFrame.Rd | 2 +- man/getFrames.Rd | 2 +- man/getTimes.Rd | 5 +++-- man/thermsum.Rd | 2 +- 11 files changed, 72 insertions(+), 40 deletions(-)
Title: Preprocessing and Feature Engineering Steps for Modeling
Description: A recipe prepares your data for modeling. We provide an extensible
framework for pipeable sequences of feature engineering steps provides
preprocessing tools to be applied to data. Statistical parameters for
the steps can be estimated from an initial data set and then applied
to other data sets. The resulting processed output can then be used as
inputs for statistical or machine learning models.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between recipes versions 0.1.16 dated 2021-04-16 and 0.1.17 dated 2021-09-27
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Title: Features Extracted from Position Specific Scoring Matrix (PSSM)
Description: Returns almost all features that has been extracted from Position Specific
Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length)
and 20 columns produced by 'PSI-BLAST' which is a program to produce
PSSM Matrix from multiple sequence alignment of proteins
see <https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details. some
of these features are described in Zahiri, J., et al.(2013)
<DOI:10.1016/j.ygeno.2013.05.006>,
Saini, H., et al.(2016)
<DOI:10.17706/jsw.11.8.756-767>,
Ding, S., et al.(2014)
<DOI:10.1016/j.biochi.2013.09.013>,
Cheng, C.W., et al.(2008)
<DOI:10.1186/1471-2105-9-S12-S6>,
Juan, E.Y., et al.(2009)
<DOI:10.1109/CISIS.2009.194>.
Author: Javad zahiri [aut],
Alireza mohammadi [aut, cre],
Saber mohammadi [aut]
Maintainer: Alireza mohammadi <alireza691111@gmail.com>
Diff between PSSMCOOL versions 0.2.1 dated 2020-10-25 and 0.2.2 dated 2021-09-27
DESCRIPTION | 20 ++-- MD5 | 76 +++++++++++++++- README.md | 225 +++++++++++++++++++++++++++++++++++++++++++++++- build |only inst/doc |only man/PSSMCOOL-package.Rd | 5 - vignettes |only 7 files changed, 308 insertions(+), 18 deletions(-)
Title: Multi-State Markov and Hidden Markov Models in Continuous Time
Description: Functions for fitting continuous-time Markov and hidden
Markov multi-state models to longitudinal data. Designed for
processes observed at arbitrary times in continuous time (panel data)
but some other observation schemes are supported. Both Markov
transition rates and the hidden Markov output process can be modelled
in terms of covariates, which may be constant or piecewise-constant
in time.
Author: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Diff between msm versions 1.6.8 dated 2019-12-16 and 1.6.9 dated 2021-09-27
DESCRIPTION | 8 MD5 | 52 R/hmm.R | 930 +++---- R/msm.R | 4092 +++++++++++++++++----------------- R/mstate.R | 2 R/optim.R | 1 R/outputs.R | 4023 ++++++++++++++++----------------- R/utils.R | 944 +++---- build/vignette.rds |binary inst/CITATION | 4 inst/NEWS | 9 inst/doc/msm-manual.R | 590 ++-- inst/doc/msm-manual.pdf |binary man/MatrixExp.Rd | 2 man/msm.Rd | 3 man/msm2Surv.Rd | 2 man/pmatrix.msm.Rd | 3 man/prevalence.msm.Rd | 5 src/lik.c | 65 src/msm.h | 1 src/pijt.c | 11 tests/testthat/test_analyticp.r | 524 ++-- tests/testthat/test_deriv.r | 414 +-- tests/testthat/test_models.r | 1420 +++++------ tests/testthat/test_models_hmmmulti.r | 272 +- tests/testthat/test_models_misc.r | 244 +- vignettes/msm-manual.Rnw | 7 27 files changed, 6852 insertions(+), 6776 deletions(-)
Title: Linear Test Statistics for Permutation Inference
Description: Basic infrastructure for linear test statistics and permutation
inference in the framework of Strasser and Weber (1999) <https://epub.wu.ac.at/102/>.
This package must not be used by end-users. CRAN package 'coin' implements all
user interfaces and is ready to be used by anyone.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between libcoin versions 1.0-8 dated 2021-02-08 and 1.0-9 dated 2021-09-27
DESCRIPTION | 8 - MD5 | 16 +- build/vignette.rds |binary inst/NEWS.Rd | 10 + inst/doc/libcoin.Rnw | 323 +++++++++++++++++++++++++------------------------ inst/doc/libcoin.pdf |binary src/libcoin.c | 9 + src/libcoin_internal.h | 4 vignettes/libcoin.Rnw | 323 +++++++++++++++++++++++++------------------------ 9 files changed, 364 insertions(+), 329 deletions(-)
Title: User Friendly Bayesian Data Analysis for Psychology
Description: Contains several Bayesian models for data analysis of psychological tests. A user friendly interface for these models should enable students and researchers to perform professional level Bayesian data analysis without advanced knowledge in programming and Bayesian statistics. This package is based on the Stan platform (Carpenter et el. 2017 <doi:10.18637/jss.v076.i01>).
Author: Jure Demšar [cre, aut],
Grega Repovš [aut],
Erik Štrumbelj [aut],
Trustees of Columbia University [cph],
John Kruschke [cph] (R/shared_functions.R - mcmc_hdi,
src/stan_files/ttest.stan),
Rasmus Baath [cph] (R/b_bootstrap.R)
Maintainer: Jure Demšar <jure.demsar@fri.uni-lj.si>
Diff between bayes4psy versions 1.2.7 dated 2021-09-10 and 1.2.8 dated 2021-09-27
DESCRIPTION | 6 +- MD5 | 16 ++--- NEWS.md | 6 +- inst/doc/adaptation_level.html | 32 +++++------ inst/doc/afterimages.html | 20 +++---- inst/doc/flanker.html | 110 ++++++++++++++++++++--------------------- inst/doc/stroop.html | 26 ++++----- src/Makevars | 4 + src/Makevars.win | 4 + 9 files changed, 115 insertions(+), 109 deletions(-)
More information about ANOVAreplication at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-08 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-13 1.0.3
Title: Tools for Temporal Social Network Analysis
Description: Temporal SNA tools for continuous- and discrete-time longitudinal networks having vertex, edge, and attribute dynamics stored in the 'networkDynamic' format. This work was supported by grant R01HD68395 from the National Institute of Health.
Author: Skye Bender-deMoll [aut, cre],
Martina Morris [aut],
James Moody [ctb]
Maintainer: Skye Bender-deMoll <skyebend@uw.edu>
Diff between tsna versions 0.3.3 dated 2021-04-23 and 0.3.4 dated 2021-09-27
ChangeLog | 1 DESCRIPTION | 11 +++-- MD5 | 8 ++-- inst/doc/tsna_vignette.html | 84 +++++++++++++++++--------------------------- tests/statsWrapper_tests.R | 2 - 5 files changed, 46 insertions(+), 60 deletions(-)
Title: General Equilibrium Modeling
Description: Some tools for developing general equilibrium models and some general equilibrium models. These models can be used for teaching economic theory and are built by the methods of new structural economics (see <https://www.nse.pku.edu.cn/> and LI Wu, 2019, ISBN: 9787521804225, General Equilibrium and Structural Dynamics: Perspectives of New Structural Economics. Beijing: Economic Science Press). The model form and mathematical methods can be traced back to von Neumann, J. (1945, A Model of General Economic Equilibrium. The Review of Economic Studies, 13. pp. 1-9) and Kemeny, J. G., O. Morgenstern and G. L. Thompson (1956, A Generalization of the von Neumann Model of an Expanding Economy, Econometrica, 24, pp. 115-135) et al. By the way, J. G. Kemeny is a co-inventor of the computer language BASIC.
Author: LI Wu <liwu@staff.shu.edu.cn>
Maintainer: LI Wu <liwu@staff.shu.edu.cn>
Diff between GE versions 0.2.1 dated 2021-09-02 and 0.2.2 dated 2021-09-27
DESCRIPTION | 6 +++--- MD5 | 10 ++++++---- NAMESPACE | 1 + R/gemInputOutputTable_2_7_2.R |only R/gemInputOutputTable_2_7_4.R | 2 +- man/gemInputOutputTable_2_7_2.Rd |only man/gemInputOutputTable_2_7_4.Rd | 2 +- 7 files changed, 12 insertions(+), 9 deletions(-)
Title: Accessing Statistics Canada Data Table and Vectors
Description: Searches for, accesses, and retrieves new-format and old-format Statistics Canada data
tables, as well as individual vectors, as tidy data frames. This package deals with encoding issues, allows for
bilingual English or French language data retrieval, and bundles convenience functions
to make it easier to work with retrieved table data. Optional caching features are provided.
Author: Jens von Bergmann [cre],
Dmitry Shkolnik [aut]
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between cansim versions 0.3.9 dated 2021-07-29 and 0.3.10 dated 2021-09-27
cansim-0.3.10/cansim/DESCRIPTION | 8 cansim-0.3.10/cansim/MD5 | 15 cansim-0.3.10/cansim/NEWS.md | 7 cansim-0.3.10/cansim/R/cansim.R | 267 +++-------- cansim-0.3.10/cansim/README.md | 4 cansim-0.3.10/cansim/inst/doc/cansim.html | 24 cansim-0.3.10/cansim/inst/doc/working_with_large_tables.html | 53 +- cansim-0.3.10/cansim/man/get_cansim.Rd | 3 cansim-0.3.9/cansim/man/parse_and_fold_in_metadata.Rd |only 9 files changed, 146 insertions(+), 235 deletions(-)