Title: Efficient Determination of Sample Size in Balanced Design of
Experiments
Description: For a balanced design of experiments, this package calculates the sample size required to detect a certain standardized effect size, under a significance level. This package also provides three graphs; detectable standardized effect size vs power, sample size vs detectable standardized effect size, and sample size vs power, which show the mutual relationship between the sample size, power and the detectable standardized effect size. The detailed procedure is described in R. V. Lenth (2006-9) <https://homepage.divms.uiowa.edu/~rlenth/Power/>, Y. B. Lim (1998), M. A. Kastenbaum, D. G. Hoel and K. O. Bowman (1970) <doi:10.2307/2334851>, and Douglas C. Montgomery (2013, ISBN: 0849323312).
Author: Jong Hee Chung [aut, cre],
Yong Bin Lim [aut],
Donghoh Kim [ctb]
Maintainer: Jong Hee Chung <jochung947@gmail.com>
Diff between BDEsize versions 1.5 dated 2021-04-23 and 1.6 dated 2021-09-29
DESCRIPTION | 8 MD5 | 24 +- R/Size.Split.R | 274 +++++++++++++------------- R/plots.2levFr.R | 26 +- R/plots.Block.R | 23 +- R/plots.Full.R | 27 +- R/plots.Split.R | 547 ++++++++++++++++++++++++++-------------------------- man/Size.2levFr.Rd | 116 +++++------ man/Size.Block.Rd | 124 +++++------ man/Size.Full.Rd | 112 +++++----- man/Size.Split.Rd | 126 +++++------ man/plots.2levFr.Rd | 90 ++++---- man/plots.Split.Rd | 90 ++++---- 13 files changed, 798 insertions(+), 789 deletions(-)
Title: Bindings for Bayesian TidyModels
Description: Fit Bayesian models using 'brms'/'Stan' with 'parsnip'/'tidymodels'
via 'bayesian' <doi:10.5281/zenodo.5539785>. 'tidymodels' is a collection of
packages for machine learning; see Kuhn and Wickham (2020) <https://www.tidymodels.org>).
The technical details of 'brms' and 'Stan' are described in Bürkner (2017)
<doi:10.18637/jss.v080.i01>, Bürkner (2018) <doi:10.32614/RJ-2018-017>,
and Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>.
Author: Hamada S. Badr [aut, cre] (<https://orcid.org/0000-0002-9808-2344>),
Paul-Christian Bürkner [aut]
Maintainer: Hamada S. Badr <badr@jhu.edu>
Diff between bayesian versions 0.0.6 dated 2021-07-12 and 0.0.7 dated 2021-09-29
DESCRIPTION | 13 +++++++------ MD5 | 24 ++++++++++++------------ NEWS.md | 7 +++++++ R/bayesian_make.R | 13 ++++++++++++- README.md | 2 +- inst/CITATION | 2 +- inst/doc/BugReports.html | 4 ++-- inst/doc/GetStarted.R | 2 +- inst/doc/GetStarted.Rmd | 4 ++-- inst/doc/GetStarted.html | 40 +++++++++++++++++++--------------------- man/bayesian.Rd | 35 +++++++++++++++++++++-------------- tests/testthat/test-bayesian.R | 2 -- vignettes/GetStarted.Rmd | 4 ++-- 13 files changed, 87 insertions(+), 65 deletions(-)
Title: Time-Frequency Analysis of 1-D Signals
Description: A set of R functions which provide an
environment for the Time-Frequency analysis of 1-D signals (and
especially for the wavelet and Gabor transforms of noisy
signals). It was originally written for Splus by Rene Carmona,
Bruno Torresani, and Wen L. Hwang, first at the University of
California at Irvine and then at Princeton University. Credit
should also be given to Andrea Wang whose functions on the
dyadic wavelet transform are included. Rwave is based on the
book: "Practical Time-Frequency Analysis: Gabor and Wavelet
Transforms with an Implementation in S", by Rene Carmona, Wen
L. Hwang and Bruno Torresani (1998, eBook ISBN:978008053942), Academic Press.
Author: Rene Carmona [aut],
Bruno Torresani [aut],
Brandon Whitcher [ctb],
Andrea Wang [ctb],
Wen-Liang Hwang [ctb],
Robert Alberts [ctb],
Jonathan M. Lees [ctb, cre]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between Rwave versions 2.5-0 dated 2021-07-09 and 2.6-0 dated 2021-09-29
DESCRIPTION | 10 ++++++---- MD5 | 6 +++--- NEWS | 5 +++++ R/Cwt_Morlet.R | 20 ++++++++++++++++++++ 4 files changed, 34 insertions(+), 7 deletions(-)
Title: Kernel k Nearest Neighbors
Description: Extends the simple k-nearest neighbors algorithm by incorporating numerous kernel functions and a variety of distance metrics. The package takes advantage of 'RcppArmadillo' to speed up the calculation of distances between observations.
Author: Lampros Mouselimis [aut, cre] (<https://orcid.org/0000-0002-8024-1546>)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between KernelKnn versions 1.1.2 dated 2021-05-04 and 1.1.3 dated 2021-09-29
KernelKnn-1.1.2/KernelKnn/R/dist_kernelknnCV.R |only KernelKnn-1.1.2/KernelKnn/man/distMat.KernelKnnCV.Rd |only KernelKnn-1.1.2/KernelKnn/tests/testthat/test-dist_kernelknnCV.R |only KernelKnn-1.1.3/KernelKnn/DESCRIPTION | 8 KernelKnn-1.1.3/KernelKnn/MD5 | 39 KernelKnn-1.1.3/KernelKnn/NAMESPACE | 1 KernelKnn-1.1.3/KernelKnn/NEWS.md | 7 KernelKnn-1.1.3/KernelKnn/R/dist_kernelknn.R | 90 - KernelKnn-1.1.3/KernelKnn/R/dist_knn_index_dist.R | 31 KernelKnn-1.1.3/KernelKnn/R/kernelknn.R | 5 KernelKnn-1.1.3/KernelKnn/R/utils.R | 180 +-- KernelKnn-1.1.3/KernelKnn/README.md | 18 KernelKnn-1.1.3/KernelKnn/build/vignette.rds |binary KernelKnn-1.1.3/KernelKnn/inst/doc/binary_classification_using_the_ionosphere_data.html | 500 ++------ KernelKnn-1.1.3/KernelKnn/inst/doc/image_classification_using_MNIST_CIFAR_data.html | 566 +++------- KernelKnn-1.1.3/KernelKnn/inst/doc/regression_using_the_housing_data.html | 452 ++----- KernelKnn-1.1.3/KernelKnn/man/switch.ops.Rd | 5 KernelKnn-1.1.3/KernelKnn/src/RcppExports.cpp | 5 KernelKnn-1.1.3/KernelKnn/tests/testthat/test-dist_knn_index_dist.R | 54 KernelKnn-1.1.3/KernelKnn/tests/testthat/test-distmat_kernelknn.R | 130 +- KernelKnn-1.1.3/KernelKnn/tests/testthat/test-kernelknn.R | 16 KernelKnn-1.1.3/KernelKnn/tests/testthat/test-kernelknn_cross_valid.R | 66 - 22 files changed, 824 insertions(+), 1349 deletions(-)
Title: Additional Tools for Developing Spatially Explicit Discrete
Event Simulation (SpaDES) Models
Description: Provides GIS and map utilities, plus additional modeling tools for
developing cellular automata, dynamic raster models, and agent based models
in 'SpaDES'.
Included are various methods for spatial spreading, spatial agents, GIS
operations, random map generation, and others.
See '?SpaDES.tools' for an categorized overview of these additional tools.
Author: Alex M Chubaty [aut, cre] (<https://orcid.org/0000-0001-7146-8135>),
Eliot J B McIntire [aut] (<https://orcid.org/0000-0002-6914-8316>),
Yong Luo [ctb],
Steve Cumming [ctb],
Jean Marchal [ctb],
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alex.chubaty@gmail.com>
Diff between SpaDES.tools versions 0.3.8 dated 2021-06-07 and 0.3.9 dated 2021-09-29
DESCRIPTION | 35 +++---- MD5 | 43 ++++---- NEWS.md | 15 ++- R/SELES.R | 49 ---------- R/distanceFromEachPoint.R | 2 R/initialize.R | 4 R/splitRaster.R | 2 R/spread.R | 1 R/spread2.R | 12 +- inst/WORDLIST | 2 inst/examples/example_cir.R | 160 ++++++++++++++++----------------- inst/examples/example_initiateAgents.R |only inst/examples/example_splitRaster.R | 4 inst/examples/example_spread3.R | 2 man/cir.Rd | 160 ++++++++++++++++----------------- man/distanceFromEachPoint.Rd | 2 man/initiateAgents.Rd | 91 +++++++++--------- man/specnumperpatch-probs.Rd | 4 man/splitRaster.Rd | 4 man/spread3.Rd | 2 src/RcppExports.cpp | 5 + tests/testthat/test-spread.R | 28 +++-- tests/testthat/test-spread2.R | 8 + 23 files changed, 309 insertions(+), 326 deletions(-)
Title: Bayesian Estimation and Optimisation of Expected False Discovery
Rate
Description: Implements the Bayesian FDR control described by
Newton et al. (2004), <doi:10.1093/biostatistics/5.2.155>.
Allows optimisation and visualisation of expected error rates based on
tail posterior probability tests.
Based on code written by Catalina Vallejos for BASiCS, see
Beyond comparisons of means: understanding changes in gene expression at the
single-cell level Vallejos et al. (2016) <doi:10.1186/s13059-016-0930-3>.
Author: Alan O'Callaghan [aut, cre],
Catalina Vallejos [aut]
Maintainer: Alan O'Callaghan <alan.ocallaghan@outlook.com>
Diff between bayefdr versions 0.1.0 dated 2020-07-30 and 0.2.0 dated 2021-09-29
DESCRIPTION | 15 ++++++++------- MD5 | 18 ++++++++++++------ NAMESPACE | 6 ++++++ R/bayefdr-package.R | 9 ++++++--- R/bayefdr.R | 36 +++++++++++++++++------------------- R/cumplot.R |only R/traceplot.R |only README.md | 7 ++++++- inst |only man/cumplot.Rd |only man/traceplot.Rd |only tests/testthat/test-bayefdr.R | 7 +++++++ tests/testthat/test-plots.R |only 13 files changed, 62 insertions(+), 36 deletions(-)
Title: Inference of Gene Regulatory Networks
Description: We present 'corto' (Correlation Tool), a simple package to infer
gene regulatory networks and visualize master regulators from gene expression
data using DPI (Data Processing Inequality) and bootstrapping to recover edges.
An initial step is performed to calculate all significant
edges between a list of source nodes (centroids) and target genes.
Then all triplets containing two centroids and one target are tested
in a DPI step which removes edges. A bootstrapping process then calculates
the robustness of the network, eventually re-adding edges previously removed by DPI.
The algorithm has been optimized to run outside a computing cluster, using a fast correlation
implementation. The package finally provides functions to calculate network enrichment
analysis from RNA-Seq and ATAC-Seq signatures as described in the article by
Giorgi lab (2020) <doi:10.1093/bioinformatics/btaa223>.
Author: Federico M. Giorgi [aut, cre],
Daniele Mercatelli [ctb],
Gonzalo Lopez-Garcia [ctb]
Maintainer: Federico M. Giorgi <federico.giorgi@gmail.com>
Diff between corto versions 1.1.8 dated 2021-09-14 and 1.1.9 dated 2021-09-29
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/gsea.R | 21 +++++++++++---------- inst/doc/corto_vignette.html | 4 ++-- 4 files changed, 19 insertions(+), 18 deletions(-)
Title: R Tools for Helsinki Open Data
Description: Tools for accessing various open data sources in the Helsinki
region in Finland. Current data sources include
the Real Estate Department (<http://ptp.hel.fi/avoindata/>),
Service Map API (<http://api.hel.fi/servicemap/v2/>),
Linked Events API (<http://api.hel.fi/linkedevents/v1/>),
Helsinki Region Infoshare statistics API (<https://dev.hel.fi/stats/>).
Author: Juuso Parkkinen [aut, cre],
Joona Lehtomaki [aut],
Pyry Kantanen [aut] (<https://orcid.org/0000-0003-2853-2765>),
Leo Lahti [aut] (<https://orcid.org/0000-0001-5537-637X>)
Maintainer: Juuso Parkkinen <juuso.parkkinen@iki.fi>
Diff between helsinki versions 1.0.3 dated 2021-09-03 and 1.0.5 dated 2021-09-29
helsinki-1.0.3/helsinki/R/HKK.R |only helsinki-1.0.3/helsinki/data |only helsinki-1.0.3/helsinki/man/aluejakokartat.Rd |only helsinki-1.0.5/helsinki/DESCRIPTION | 15 helsinki-1.0.5/helsinki/MD5 | 24 - helsinki-1.0.5/helsinki/R/get_city_map.R | 4 helsinki-1.0.5/helsinki/R/wfs_api.R | 6 helsinki-1.0.5/helsinki/README.md | 6 helsinki-1.0.5/helsinki/inst/doc/helsinki_tutorial.R | 26 - helsinki-1.0.5/helsinki/inst/doc/helsinki_tutorial.Rmd | 33 - helsinki-1.0.5/helsinki/inst/doc/helsinki_tutorial.html | 337 +++++++--------- helsinki-1.0.5/helsinki/man/get_city_map.Rd | 4 helsinki-1.0.5/helsinki/tests |only helsinki-1.0.5/helsinki/vignettes/helsinki_tutorial.Rmd | 33 - 14 files changed, 224 insertions(+), 264 deletions(-)
Title: Nonlinear Root Finding, Equilibrium and Steady-State Analysis of
Ordinary Differential Equations
Description: Routines to find the root of nonlinear functions, and to perform steady-state and equilibrium analysis of ordinary differential equations (ODE).
Includes routines that: (1) generate gradient and jacobian matrices (full and banded),
(2) find roots of non-linear equations by the 'Newton-Raphson' method,
(3) estimate steady-state conditions of a system of (differential) equations in full, banded or sparse form, using the 'Newton-Raphson' method, or by dynamically running,
(4) solve the steady-state conditions for uni-and multicomponent 1-D, 2-D, and 3-D partial differential equations, that have been converted to ordinary differential equations
by numerical differencing (using the method-of-lines approach).
Includes fortran code.
Author: Karline Soetaert [aut, cre],
Alan C. Hindmarsh [ctb] (files lsodes.f, sparse.f),
S.C. Eisenstat [ctb] (file sparse.f),
Cleve Moler [ctb] (file dlinpk.f),
Jack Dongarra [ctb] (file dlinpk.f),
Youcef Saad [ctb] (file dsparsk.f)
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>
Diff between rootSolve versions 1.8.2.2 dated 2021-07-05 and 1.8.2.3 dated 2021-09-29
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/steady_utils.c | 6 ++---- 3 files changed, 7 insertions(+), 9 deletions(-)
Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use
in photobiology and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted irradiances/doses, fluence rates,
transmittance, reflectance, absorptance, absorbance and diverse ratios and
other derived quantities from spectral data. Local maxima and minima: peaks,
valleys and spikes. Conversion between energy-and photon-based units.
Wavelength interpolation. Astronomical calculations related solar angles and
day length. Colours and vision. This package is part of the 'r4photobiology'
suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>),
Glenn Davis [ctb],
Agnese Fazio [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.10.6 dated 2021-04-04 and 0.10.7 dated 2021-09-29
DESCRIPTION | 15 - MD5 | 62 ++++--- NAMESPACE | 7 NEWS.md | 45 +++-- R/fresnel.r | 24 +- R/sun.calc.r | 290 ++++++++++++++++++++++++------------ R/water.et.r |only R/water.vapour.R | 245 +++++++++++++++++++----------- README.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/userguide-1-radiation.html | 22 +- inst/doc/userguide-2-astronomy.R | 13 + inst/doc/userguide-2-astronomy.Rmd | 42 +++++ inst/doc/userguide-2-astronomy.html | 82 ++++++---- man/ET_ref.Rd |only man/Rfr_from_n.Rd | 18 +- man/as.solar_date.Rd | 7 man/as_tod.Rd | 8 man/day_night.Rd | 12 - man/format.solar_time.Rd | 5 man/format.tod_time.Rd | 13 - man/irrad_extraterrestrial.Rd |only man/is.solar_time.Rd | 12 - man/net_irradiance.Rd |only man/photobiology-package.Rd | 10 - man/print.solar_time.Rd | 12 - man/print.tod_time.Rd | 13 - man/solar_time.Rd | 55 +++--- man/sun_angles.Rd | 59 ++++--- man/twilight2angle.Rd | 2 man/tz_time_diff.Rd | 12 + man/water_vp_sat.Rd | 50 ++++-- vignettes/userguide-2-astronomy.Rmd | 42 +++++ 34 files changed, 769 insertions(+), 412 deletions(-)
Title: Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Description: Airborne LiDAR (Light Detection and Ranging) interface for data
manipulation and visualization. Read/write 'las' and 'laz' files, computation
of metrics in area based approach, point filtering, artificial point reduction,
classification from geographic data, normalization, individual tree segmentation
and other manipulations.
Author: Jean-Romain Roussel [aut, cre, cph],
David Auty [aut, ctb] (Reviews the documentation),
Florian De Boissieu [ctb] (Fixed bugs and improved catalog features),
Andrew Sánchez Meador [ctb] (Implemented wing2015() for
segment_snags()),
Bourdon Jean-François [ctb] (Contributed to Roussel2020() for
track_sensor()),
Gatziolis Demetrios [ctb] (Implemented Gatziolis2019() for
track_sensor()),
Leon Steinmeier [ctb] (Contributed to parallelization management),
Stanislaw Adaszewski [cph] (Author of the C++ concaveman code)
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between lidR versions 3.2.0 dated 2021-09-26 and 3.2.1 dated 2021-09-29
DESCRIPTION | 8 MD5 | 32 +-- NEWS.md | 24 +- R/catalog_makecluster.R | 2 R/normalize_height.R | 2 R/projection.R | 22 -- R/utils_metrics.R | 2 R/utils_threads.R | 2 inst/WORDLIST | 373 +++++++++++++++++++++------------------ man/catalog_makechunks.Rd | 2 man/normalize_height.Rd | 2 man/projection.Rd | 9 man/set_lidr_threads.Rd | 2 man/stdmetrics.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test-concaveman.R | 5 tests/testthat/test-readLAS.R | 10 + 17 files changed, 271 insertions(+), 228 deletions(-)
Title: Bayesian Projection of Life Expectancy
Description: Making probabilistic projections of life expectancy for all countries of the world, using a Bayesian hierarchical model <doi:10.1007/s13524-012-0193-x>. Subnational projections are also supported.
Author: Hana Sevcikova, Adrian Raftery, Jennifer Chunn
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesLife versions 5.0-1 dated 2021-04-05 and 5.0-3 dated 2021-09-29
ChangeLog | 6 ++++++ DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/diagnostics.R | 4 ++-- 4 files changed, 16 insertions(+), 10 deletions(-)
Title: Small Count Rounding of Tabular Data
Description: A statistical disclosure control tool to protect frequency tables in cases where small values are sensitive. The function PLSrounding() performs small count rounding of necessary inner cells so that all small frequencies of cross-classifications to be published (publishable cells) are rounded. This is equivalent to changing micro data since frequencies of unique combinations are changed. Thus, additivity and consistency are guaranteed. The methodology is described in Langsrud and Heldal (2018) <https://www.researchgate.net/publication/327768398_An_Algorithm_for_Small_Count_Rounding_of_Tabular_Data>.
Author: Øyvind Langsrud [aut, cre],
Johan Heldal [aut]
Maintainer: Øyvind Langsrud <oyl@ssb.no>
Diff between SmallCountRounding versions 0.8.0 dated 2021-04-26 and 0.9.0 dated 2021-09-29
SmallCountRounding-0.8.0/SmallCountRounding/LICENSE |only SmallCountRounding-0.9.0/SmallCountRounding/DESCRIPTION | 14 SmallCountRounding-0.9.0/SmallCountRounding/MD5 | 35 SmallCountRounding-0.9.0/SmallCountRounding/NAMESPACE | 7 SmallCountRounding-0.9.0/SmallCountRounding/NEWS.md | 7 SmallCountRounding-0.9.0/SmallCountRounding/R/PLSrounding.R | 55 SmallCountRounding-0.9.0/SmallCountRounding/R/PLSroundingFits.R |only SmallCountRounding-0.9.0/SmallCountRounding/R/RoundViaDummy.R | 53 SmallCountRounding-0.9.0/SmallCountRounding/R/aggrtab.R | 1 SmallCountRounding-0.9.0/SmallCountRounding/R/makeroundtabs.R | 1 SmallCountRounding-0.9.0/SmallCountRounding/R/redcube.R | 1 SmallCountRounding-0.9.0/SmallCountRounding/R/roundcube.R | 1 SmallCountRounding-0.9.0/SmallCountRounding/build/partial.rdb |binary SmallCountRounding-0.9.0/SmallCountRounding/build/vignette.rds |binary SmallCountRounding-0.9.0/SmallCountRounding/inst/doc/Introduction_to_SmallCountRounding.html | 796 ++-------- SmallCountRounding-0.9.0/SmallCountRounding/man/HDutility.Rd | 6 SmallCountRounding-0.9.0/SmallCountRounding/man/PLSrounding.Rd | 24 SmallCountRounding-0.9.0/SmallCountRounding/man/PLSroundingFits.Rd |only SmallCountRounding-0.9.0/SmallCountRounding/man/RoundViaDummy.Rd | 5 SmallCountRounding-0.9.0/SmallCountRounding/man/SmallCountRounding-package.Rd | 12 20 files changed, 317 insertions(+), 701 deletions(-)
More information about SmallCountRounding at CRAN
Permanent link
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cre, cph],
Paul Buerkner [ctb],
Maxime Herve [ctb],
Jonathon Love [ctb],
Hannes Riebl [ctb],
Henrik Singmann [ctb]
Maintainer: Russell V. Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.6.3 dated 2021-08-20 and 1.7.0 dated 2021-09-29
DESCRIPTION | 10 +- MD5 | 76 ++++++++--------- NAMESPACE | 1 NEWS.md | 90 +++++++++++++------- R/contrast.R | 2 R/emmGrid-methods.R | 22 ++++ R/emmeans.R | 38 +++++--- R/nested.R | 52 +++++++++++ R/ordinal-support.R | 41 +++++++-- R/qdrg.R | 60 ++++++++++--- R/rbind.R | 6 - R/ref-grid.R | 165 +++++++++++++++++++++++++++++++++++-- inst/doc/FAQs.Rmd | 26 ++++- inst/doc/FAQs.html | 19 +++- inst/doc/basics.html | 4 inst/doc/comparisons.html | 10 +- inst/doc/confidence-intervals.html | 12 +- inst/doc/interactions.html | 18 ++-- inst/doc/messy-data.R | 27 ++++++ inst/doc/messy-data.Rmd | 113 +++++++++++++++++++++++++ inst/doc/messy-data.html | 108 +++++++++++++++++++++++- inst/doc/models.html | 4 inst/doc/predictions.html | 4 inst/doc/sophisticated.html | 6 - inst/doc/transformations.html | 4 inst/doc/utilities.html | 4 inst/doc/vignette-topics.Rmd | 14 ++- inst/doc/vignette-topics.html | 22 ++++ inst/doc/xplanations.html | 4 inst/doc/xtending.html | 8 - man/add_grouping.Rd | 7 + man/emm_options.Rd | 10 ++ man/emmeans.Rd | 8 + man/qdrg.Rd | 43 ++++++--- man/rbind.emmGrid.Rd | 31 +++++- man/ref_grid.Rd | 16 +++ vignettes/FAQs.Rmd | 26 ++++- vignettes/messy-data.Rmd | 113 +++++++++++++++++++++++++ vignettes/vignette-topics.Rmd | 14 ++- 39 files changed, 1042 insertions(+), 196 deletions(-)
Title: Bootstrap Unit Root Tests
Description: Set of functions to perform various bootstrap unit root tests for both individual time series
(including augmented Dickey-Fuller test and union tests), multiple time series and panel data; see
Palm, Smeekes and Urbain (2008) <doi:10.1111/j.1467-9892.2007.00565.x>,
Palm, Smeekes and Urbain (2011) <doi:10.1016/j.jeconom.2010.11.010>,
Moon and Perron (2012) <doi:10.1016/j.jeconom.2012.01.008>,
Smeekes and Taylor (2012) <doi:10.1017/S0266466611000387> and
Smeekes (2015) <doi:10.1111/jtsa.12110> for key references.
Author: Stephan Smeekes [cre, aut] (<https://orcid.org/0000-0002-0157-639X>),
Ines Wilms [aut]
Maintainer: Stephan Smeekes <s.smeekes@maastrichtuniversity.nl>
Diff between bootUR versions 0.2.0 dated 2020-07-24 and 0.3.0 dated 2021-09-29
bootUR-0.2.0/bootUR/man/BSQTtest.Rd |only bootUR-0.2.0/bootUR/man/bFDRtest.Rd |only bootUR-0.2.0/bootUR/man/boot_df.Rd |only bootUR-0.2.0/bootUR/man/iADFtest.Rd |only bootUR-0.2.0/bootUR/man/paneltest.Rd |only bootUR-0.3.0/bootUR/DESCRIPTION | 10 bootUR-0.3.0/bootUR/MD5 | 73 bootUR-0.3.0/bootUR/NAMESPACE | 7 bootUR-0.3.0/bootUR/NEWS.md | 11 bootUR-0.3.0/bootUR/R/RcppExports.R | 8 bootUR-0.3.0/bootUR/R/adftest.R |only bootUR-0.3.0/bootUR/R/auxiliary-deprecated.R |only bootUR-0.3.0/bootUR/R/auxiliary.R | 291 +- bootUR-0.3.0/bootUR/R/bootUR-deprecated.R |only bootUR-0.3.0/bootUR/R/bootURtests-deprecated.R |only bootUR-0.3.0/bootUR/R/bootURtests.R | 1133 +++------- bootUR-0.3.0/bootUR/R/order_of_integration.R |only bootUR-0.3.0/bootUR/README.md | 327 +- bootUR-0.3.0/bootUR/inst/doc/bootUR-intro.R | 25 bootUR-0.3.0/bootUR/inst/doc/bootUR-intro.Rmd | 69 bootUR-0.3.0/bootUR/inst/doc/bootUR-intro.html | 507 +--- bootUR-0.3.0/bootUR/man/BSQTtest-deprecated.Rd |only bootUR-0.3.0/bootUR/man/adf.Rd |only bootUR-0.3.0/bootUR/man/bFDRtest-deprecated.Rd |only bootUR-0.3.0/bootUR/man/bootUR-deprecated.Rd |only bootUR-0.3.0/bootUR/man/boot_adf.Rd |only bootUR-0.3.0/bootUR/man/boot_df-deprecated.Rd |only bootUR-0.3.0/bootUR/man/boot_fdr.Rd |only bootUR-0.3.0/bootUR/man/boot_panel.Rd |only bootUR-0.3.0/bootUR/man/boot_sqt.Rd |only bootUR-0.3.0/bootUR/man/boot_union.Rd | 50 bootUR-0.3.0/bootUR/man/boot_ur.Rd |only bootUR-0.3.0/bootUR/man/check_inputs.Rd | 37 bootUR-0.3.0/bootUR/man/check_inputs_old-deprecated.Rd |only bootUR-0.3.0/bootUR/man/check_missing_insample_values.Rd | 2 bootUR-0.3.0/bootUR/man/diff_mult.Rd | 6 bootUR-0.3.0/bootUR/man/do_tests_and_bootstrap.Rd | 41 bootUR-0.3.0/bootUR/man/do_tests_and_bootstrap_old-deprecated.Rd |only bootUR-0.3.0/bootUR/man/find_nonmissing_subsample.Rd | 2 bootUR-0.3.0/bootUR/man/iADFtest-deprecated.Rd |only bootUR-0.3.0/bootUR/man/order_integration.Rd | 17 bootUR-0.3.0/bootUR/man/paneltest-deprecated.Rd |only bootUR-0.3.0/bootUR/man/plot_missing_values.Rd | 4 bootUR-0.3.0/bootUR/man/plot_order_integration.Rd | 2 bootUR-0.3.0/bootUR/man/print.mult_htest.Rd |only bootUR-0.3.0/bootUR/src/RcppExports.cpp | 46 bootUR-0.3.0/bootUR/src/bootURfunctions.cpp | 209 + bootUR-0.3.0/bootUR/tests/testthat/test_inputs.R | 78 bootUR-0.3.0/bootUR/tests/testthat/test_replicability.R | 18 bootUR-0.3.0/bootUR/vignettes/bootUR-intro.Rmd | 69 50 files changed, 1513 insertions(+), 1529 deletions(-)
Title: Normalize Metabolomic Data using QC Signal
Description: Takes QC signal for each day and normalize metabolomic
data that has been acquired in a certain period of time. At least
three QC per day are required.
Author: Monica Calderon-Santiago
Maintainer: Monica Calderon-Santiago <b42casam@uco.es>
Diff between MetaboQC versions 1.0 dated 2016-09-15 and 1.1 dated 2021-09-29
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/QCcorrectionMultiLOESS.R | 3 ++- R/QCcorrectionMultiPoly3.R | 3 ++- R/QCcorrectionMultiPoly6.R | 3 ++- 5 files changed, 14 insertions(+), 11 deletions(-)
Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R
using Literate Programming techniques.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Abhraneel Sarma [ctb],
Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Andre Simon [ctb] (the CSS files under inst/themes/ were derived from
the Highlight package http://www.andre-simon.de),
Aron Atkins [ctb],
Aaron Wolen [ctb],
Ashley Manton [ctb],
Atsushi Yasumoto [ctb] (<https://orcid.org/0000-0002-8335-495X>),
Ben Baumer [ctb],
Brian Diggs [ctb],
Brian Zhang [ctb],
Bulat Yapparov [ctb],
Cassio Pereira [ctb],
Christophe Dervieux [ctb],
David Hall [ctb],
David Hugh-Jones [ctb],
David Robinson [ctb],
Doug Hemken [ctb],
Duncan Murdoch [ctb],
Elio Campitelli [ctb],
Ellis Hughes [ctb],
Emily Riederer [ctb],
Fabian Hirschmann [ctb],
Fitch Simeon [ctb],
Forest Fang [ctb],
Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty),
Garrick Aden-Buie [ctb],
Gregoire Detrez [ctb],
Hadley Wickham [ctb],
Hao Zhu [ctb],
Heewon Jeon [ctb],
Henrik Bengtsson [ctb],
Hiroaki Yutani [ctb],
Ian Lyttle [ctb],
Hodges Daniel [ctb],
Jake Burkhead [ctb],
James Manton [ctb],
Jared Lander [ctb],
Jason Punyon [ctb],
Javier Luraschi [ctb],
Jeff Arnold [ctb],
Jenny Bryan [ctb],
Jeremy Ashkenas [ctb, cph] (the CSS file at
inst/misc/docco-classic.css),
Jeremy Stephens [ctb],
Jim Hester [ctb],
Joe Cheng [ctb],
Johannes Ranke [ctb],
John Honaker [ctb],
John Muschelli [ctb],
Jonathan Keane [ctb],
JJ Allaire [ctb],
Johan Toloe [ctb],
Jonathan Sidi [ctb],
Joseph Larmarange [ctb],
Julien Barnier [ctb],
Kaiyin Zhong [ctb],
Kamil Slowikowski [ctb],
Karl Forner [ctb],
Kevin K. Smith [ctb],
Kirill Mueller [ctb],
Kohske Takahashi [ctb],
Lorenz Walthert [ctb],
Lucas Gallindo [ctb],
Marius Hofert [ctb],
Martin Modrák [ctb],
Michael Chirico [ctb],
Michael Friendly [ctb],
Michal Bojanowski [ctb],
Michel Kuhlmann [ctb],
Miller Patrick [ctb],
Nacho Caballero [ctb],
Nick Salkowski [ctb],
Niels Richard Hansen [ctb],
Noam Ross [ctb],
Obada Mahdi [ctb],
Pavel N. Krivitsky [ctb] (<https://orcid.org/0000-0002-9101-3362>),
Qiang Li [ctb],
Ramnath Vaidyanathan [ctb],
Richard Cotton [ctb],
Robert Krzyzanowski [ctb],
Romain Francois [ctb],
Ruaridh Williamson [ctb],
Scott Kostyshak [ctb],
Sebastian Meyer [ctb],
Sietse Brouwer [ctb],
Simon de Bernard [ctb],
Sylvain Rousseau [ctb],
Taiyun Wei [ctb],
Thibaut Assus [ctb],
Thibaut Lamadon [ctb],
Thomas Leeper [ctb],
Tim Mastny [ctb],
Tom Torsney-Weir [ctb],
Trevor Davis [ctb],
Viktoras Veitas [ctb],
Weicheng Zhu [ctb],
Wush Wu [ctb],
Zachary Foster [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between knitr versions 1.35 dated 2021-09-28 and 1.36 dated 2021-09-29
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- R/parser.R | 22 ++++++++++++++++------ R/rocco.R | 2 +- R/utils-vignettes.R | 8 ++++++++ R/utils.R | 2 -- inst/doc/knit_expand.html | 4 ++-- inst/doc/knit_print.html | 12 ++++++------ inst/doc/knitr-intro.html | 10 +++++----- inst/doc/knitr-markdown.html | 2 +- inst/doc/knitr-refcard.pdf |binary tests/testit/test-table.R | 2 +- 12 files changed, 54 insertions(+), 38 deletions(-)
Title: Dynamic Bayesian Network Learning and Inference
Description: Learning and inference over dynamic Bayesian networks of arbitrary
Markovian order. Extends some of the functionality offered by the 'bnlearn'
package to learn the networks from data and perform exact inference.
It offers three structure learning algorithms for dynamic Bayesian networks
and the possibility to perform forecasts of arbitrary length. A tool for
visualizing the structure of the net is also provided via the 'visNetwork'
package.
Author: David Quesada [aut, cre],
Gabriel Valverde [ctb]
Maintainer: David Quesada <dkesada@gmail.com>
Diff between dbnR versions 0.5.3 dated 2020-10-13 and 0.7.1 dated 2021-09-29
dbnR-0.5.3/dbnR/src/include/psoho_structure_learning.h |only dbnR-0.7.1/dbnR/DESCRIPTION | 12 dbnR-0.7.1/dbnR/MD5 | 74 +++- dbnR-0.7.1/dbnR/NAMESPACE | 7 dbnR-0.7.1/dbnR/NEWS.md | 60 +++ dbnR-0.7.1/dbnR/R/RcppExports.R | 110 ++++++ dbnR-0.7.1/dbnR/R/dbn_inference.R | 111 ++++++ dbnR-0.7.1/dbnR/R/dbn_learn.R | 16 dbnR-0.7.1/dbnR/R/dbn_visualization.R | 2 dbnR-0.7.1/dbnR/R/security_checks.R | 67 +--- dbnR-0.7.1/dbnR/R/structure_learning_dmmhc.R | 26 + dbnR-0.7.1/dbnR/R/structure_learning_natpsoho.R |only dbnR-0.7.1/dbnR/R/structure_learning_psoho.R | 87 +++-- dbnR-0.7.1/dbnR/R/utils.R | 229 +++++++++++++- dbnR-0.7.1/dbnR/README.md | 23 + dbnR-0.7.1/dbnR/man/Particle.Rd | 6 dbnR-0.7.1/dbnR/man/PsoCtrl.Rd | 14 dbnR-0.7.1/dbnR/man/bn_translate_exp.Rd |only dbnR-0.7.1/dbnR/man/create_natcauslist_cpp.Rd |only dbnR-0.7.1/dbnR/man/crop_names_cpp.Rd |only dbnR-0.7.1/dbnR/man/dmmhc.Rd | 6 dbnR-0.7.1/dbnR/man/exact_inference_backwards.Rd |only dbnR-0.7.1/dbnR/man/expand_time_nodes.Rd | 2 dbnR-0.7.1/dbnR/man/filter_same_cycle.Rd |only dbnR-0.7.1/dbnR/man/filtered_fold_dt.Rd |only dbnR-0.7.1/dbnR/man/generate_random_network_exp.Rd |only dbnR-0.7.1/dbnR/man/init_cl_cpp.Rd |only dbnR-0.7.1/dbnR/man/learn_dbn_struc.Rd | 4 dbnR-0.7.1/dbnR/man/natCauslist.Rd |only dbnR-0.7.1/dbnR/man/natParticle.Rd |only dbnR-0.7.1/dbnR/man/natPosition.Rd |only dbnR-0.7.1/dbnR/man/natPsoCtrl.Rd |only dbnR-0.7.1/dbnR/man/natPsoho.Rd |only dbnR-0.7.1/dbnR/man/natVelocity.Rd |only dbnR-0.7.1/dbnR/man/nat_cte_times_vel_cpp.Rd |only dbnR-0.7.1/dbnR/man/nat_pos_minus_pos_cpp.Rd |only dbnR-0.7.1/dbnR/man/nat_pos_plus_vel_cpp.Rd |only dbnR-0.7.1/dbnR/man/nat_vel_plus_vel_cpp.Rd |only dbnR-0.7.1/dbnR/man/natcl_to_arc_matrix_cpp.Rd |only dbnR-0.7.1/dbnR/man/nodes_gen_exp.Rd |only dbnR-0.7.1/dbnR/man/one_hot.Rd |only dbnR-0.7.1/dbnR/man/one_hot_cpp.Rd |only dbnR-0.7.1/dbnR/man/ordering_gen_exp.Rd |only dbnR-0.7.1/dbnR/man/pos_minus_pos_cpp.Rd | 4 dbnR-0.7.1/dbnR/man/psoho.Rd | 15 dbnR-0.7.1/dbnR/man/recount_arcs_exp.Rd |only dbnR-0.7.1/dbnR/man/reduce_freq.Rd |only dbnR-0.7.1/dbnR/man/smooth_ts.Rd |only dbnR-0.7.1/dbnR/man/trunc_geom.Rd |only dbnR-0.7.1/dbnR/src/RcppExports.cpp | 144 ++++++++ dbnR-0.7.1/dbnR/src/include/structure_learning_natPsoho.h |only dbnR-0.7.1/dbnR/src/include/structure_learning_psoho.h |only dbnR-0.7.1/dbnR/src/structure_learning_natPsoho.cpp |only dbnR-0.7.1/dbnR/src/structure_learning_psoho.cpp | 4 54 files changed, 891 insertions(+), 132 deletions(-)
Title: Use Image in 'ggplot2'
Description: Supports image files and graphic objects to be visualized in
'ggplot2' graphic system.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggimage versions 0.2.9 dated 2021-08-20 and 0.3.0 dated 2021-09-29
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NAMESPACE | 2 ++ R/geom_phylopic.R | 35 +++++++++++++++++++++++++++++++++-- R/utilities.R | 13 ++++++++++++- man/download_phylopic.Rd |only 6 files changed, 56 insertions(+), 11 deletions(-)
More information about marginaleffects at CRAN
Permanent link
More information about GoogleImage2Array at CRAN
Permanent link
Title: Network Visualization using 'vis.js' Library
Description: Provides an R interface to the 'vis.js' JavaScript charting
library. It allows an interactive visualization of networks.
Author: Almende B.V. and Contributors [aut, cph] (vis.js library in
htmlwidgets/lib, https://visjs.org/,
https://github.com/visjs/vis-network),
Benoit Thieurmel [aut, cre] (R interface),
Titouan Robert [aut, ctb]
Maintainer: Benoit Thieurmel <benoit.thieurmel@datastorm.fr>
Diff between visNetwork versions 2.0.9 dated 2019-12-06 and 2.1.0 dated 2021-09-29
visNetwork-2.0.9/visNetwork/inst/docjs/css/bootstrap-theme.css |only visNetwork-2.0.9/visNetwork/inst/docjs/css/bootstrap-theme.css.map |only visNetwork-2.0.9/visNetwork/inst/docjs/css/bootstrap-theme.min.css |only visNetwork-2.0.9/visNetwork/inst/docjs/css/bootstrap.css |only visNetwork-2.0.9/visNetwork/inst/docjs/css/bootstrap.css.map |only visNetwork-2.0.9/visNetwork/inst/docjs/css/bootstrap.min.css |only visNetwork-2.0.9/visNetwork/inst/docjs/css/carousel.css |only visNetwork-2.0.9/visNetwork/inst/docjs/css/prettify.css |only visNetwork-2.0.9/visNetwork/inst/docjs/css/style.css |only visNetwork-2.0.9/visNetwork/inst/docjs/css/tipuesearch.css |only visNetwork-2.0.9/visNetwork/inst/docjs/js |only visNetwork-2.0.9/visNetwork/inst/examples |only visNetwork-2.0.9/visNetwork/inst/fontAwesome/Font_Awesome_Cheatsheet.pdf |only visNetwork-2.0.9/visNetwork/inst/htmlwidgets/lib/font-awesome |only visNetwork-2.0.9/visNetwork/inst/htmlwidgets/lib/vis/vis.css |only visNetwork-2.0.9/visNetwork/inst/htmlwidgets/lib/vis/vis.min.js |only visNetwork-2.0.9/visNetwork/inst/tests/get_coefficients_transformation.R |only visNetwork-2.0.9/visNetwork/inst/tests/shiny_collapsed |only visNetwork-2.0.9/visNetwork/inst/tests/sparkline.R |only visNetwork-2.1.0/visNetwork/DESCRIPTION | 17 visNetwork-2.1.0/visNetwork/MD5 | 375 visNetwork-2.1.0/visNetwork/NAMESPACE | 2 visNetwork-2.1.0/visNetwork/NEWS | 8 visNetwork-2.1.0/visNetwork/R/dependencies.R | 39 visNetwork-2.1.0/visNetwork/R/visClustering.R | 6 visNetwork-2.1.0/visNetwork/R/visCollapse.R | 2 visNetwork-2.1.0/visNetwork/R/visConfigure.R | 1 visNetwork-2.1.0/visNetwork/R/visDocumentation.R | 12 visNetwork-2.1.0/visNetwork/R/visEdges.R | 50 visNetwork-2.1.0/visNetwork/R/visHclust.R | 37 visNetwork-2.1.0/visNetwork/R/visHierarchicalLayout.R | 5 visNetwork-2.1.0/visNetwork/R/visIgraph.R | 98 visNetwork-2.1.0/visNetwork/R/visIgraphLayout.R | 6 visNetwork-2.1.0/visNetwork/R/visInteraction.R | 9 visNetwork-2.1.0/visNetwork/R/visLayout.R | 13 visNetwork-2.1.0/visNetwork/R/visLegend.R | 14 visNetwork-2.1.0/visNetwork/R/visNetwork.R | 6 visNetwork-2.1.0/visNetwork/R/visNetworkEditor.R | 23 visNetwork-2.1.0/visNetwork/R/visNetworkEvents.R | 13 visNetwork-2.1.0/visNetwork/R/visNetworkProxy.R | 2 visNetwork-2.1.0/visNetwork/R/visNodes.R | 41 visNetwork-2.1.0/visNetwork/R/visOptions.R | 150 visNetwork-2.1.0/visNetwork/R/visPhysics.R | 11 visNetwork-2.1.0/visNetwork/R/visTree.R | 32 visNetwork-2.1.0/visNetwork/R/visTreeModule.R | 29 visNetwork-2.1.0/visNetwork/README.md | 13 visNetwork-2.1.0/visNetwork/build/vignette.rds |binary visNetwork-2.1.0/visNetwork/inst/NOTICE | 2 visNetwork-2.1.0/visNetwork/inst/common-docs-files |only visNetwork-2.1.0/visNetwork/inst/doc/Introduction-to-visNetwork.R | 72 visNetwork-2.1.0/visNetwork/inst/doc/Introduction-to-visNetwork.Rmd | 21 visNetwork-2.1.0/visNetwork/inst/doc/Introduction-to-visNetwork.html | 464 - visNetwork-2.1.0/visNetwork/inst/docjs/css/overrides.css |only visNetwork-2.1.0/visNetwork/inst/docjs/network/configure.html | 461 - visNetwork-2.1.0/visNetwork/inst/docjs/network/edges.html | 2634 +++-- visNetwork-2.1.0/visNetwork/inst/docjs/network/groups.html | 410 visNetwork-2.1.0/visNetwork/inst/docjs/network/index.html | 4506 ++++++---- visNetwork-2.1.0/visNetwork/inst/docjs/network/interaction.html | 593 - visNetwork-2.1.0/visNetwork/inst/docjs/network/layout.html | 591 - visNetwork-2.1.0/visNetwork/inst/docjs/network/manipulation.html | 607 - visNetwork-2.1.0/visNetwork/inst/docjs/network/nodes.html | 2850 +++--- visNetwork-2.1.0/visNetwork/inst/docjs/network/physics.html | 960 +- visNetwork-2.1.0/visNetwork/inst/fontAwesome/Font_Awesome_Cheatsheet_4_7_0.pdf |only visNetwork-2.1.0/visNetwork/inst/htmlwidgets/lib/css/dataManipulation.css | 15 visNetwork-2.1.0/visNetwork/inst/htmlwidgets/lib/fontawesome_4.7.0 |only visNetwork-2.1.0/visNetwork/inst/htmlwidgets/lib/fontawesome_5.13.0 |only visNetwork-2.1.0/visNetwork/inst/htmlwidgets/lib/vis/add_css.txt |only visNetwork-2.1.0/visNetwork/inst/htmlwidgets/lib/vis/vis-network.min.css |only visNetwork-2.1.0/visNetwork/inst/htmlwidgets/lib/vis/vis-network.min.js |only visNetwork-2.1.0/visNetwork/inst/htmlwidgets/visNetwork.js | 360 visNetwork-2.1.0/visNetwork/inst/htmlwidgets/visNetwork.yaml | 6 visNetwork-2.1.0/visNetwork/inst/shiny/src/server/manip_server.R | 10 visNetwork-2.1.0/visNetwork/inst/shiny/src/server/options_server.R | 3 visNetwork-2.1.0/visNetwork/man/addExport.Rd | 36 visNetwork-2.1.0/visNetwork/man/addFontAwesome.Rd | 122 visNetwork-2.1.0/visNetwork/man/addIonicons.Rd | 69 visNetwork-2.1.0/visNetwork/man/visClusteringByColor.Rd | 108 visNetwork-2.1.0/visNetwork/man/visClusteringByConnection.Rd | 52 visNetwork-2.1.0/visNetwork/man/visClusteringByGroup.Rd | 98 visNetwork-2.1.0/visNetwork/man/visClusteringByHubsize.Rd | 58 visNetwork-2.1.0/visNetwork/man/visClusteringOutliers.Rd | 58 visNetwork-2.1.0/visNetwork/man/visConfigure.Rd | 107 visNetwork-2.1.0/visNetwork/man/visDocumentation.Rd | 59 visNetwork-2.1.0/visNetwork/man/visEdges.Rd | 398 visNetwork-2.1.0/visNetwork/man/visEvents.Rd | 323 visNetwork-2.1.0/visNetwork/man/visExport.Rd | 132 visNetwork-2.1.0/visNetwork/man/visFit.Rd | 84 visNetwork-2.1.0/visNetwork/man/visFocus.Rd | 102 visNetwork-2.1.0/visNetwork/man/visGetBoundingBox.Rd | 72 visNetwork-2.1.0/visNetwork/man/visGetConnectedEdges.Rd | 72 visNetwork-2.1.0/visNetwork/man/visGetConnectedNodes.Rd | 72 visNetwork-2.1.0/visNetwork/man/visGetEdges.Rd | 68 visNetwork-2.1.0/visNetwork/man/visGetNodes.Rd | 72 visNetwork-2.1.0/visNetwork/man/visGetPositions.Rd | 72 visNetwork-2.1.0/visNetwork/man/visGetScale.Rd | 68 visNetwork-2.1.0/visNetwork/man/visGetSelectedEdges.Rd | 68 visNetwork-2.1.0/visNetwork/man/visGetSelectedNodes.Rd | 68 visNetwork-2.1.0/visNetwork/man/visGetSelection.Rd | 68 visNetwork-2.1.0/visNetwork/man/visGetViewPosition.Rd | 68 visNetwork-2.1.0/visNetwork/man/visGroups.Rd | 82 visNetwork-2.1.0/visNetwork/man/visHclust.Rd | 382 visNetwork-2.1.0/visNetwork/man/visHierarchicalLayout.Rd | 131 visNetwork-2.1.0/visNetwork/man/visIgraphLayout.Rd | 198 visNetwork-2.1.0/visNetwork/man/visInteraction.Rd | 256 visNetwork-2.1.0/visNetwork/man/visLayout.Rd | 106 visNetwork-2.1.0/visNetwork/man/visLegend.Rd | 272 visNetwork-2.1.0/visNetwork/man/visMoveNode.Rd | 76 visNetwork-2.1.0/visNetwork/man/visNearestNodes.Rd | 76 visNetwork-2.1.0/visNetwork/man/visNetwork-collapse.Rd | 132 visNetwork-2.1.0/visNetwork/man/visNetwork-exports.Rd | 14 visNetwork-2.1.0/visNetwork/man/visNetwork-igraph.Rd | 224 visNetwork-2.1.0/visNetwork/man/visNetwork-shiny.Rd | 154 visNetwork-2.1.0/visNetwork/man/visNetwork-treeModule.Rd | 418 visNetwork-2.1.0/visNetwork/man/visNetwork.Rd | 452 - visNetwork-2.1.0/visNetwork/man/visNetworkEditor-module.Rd | 128 visNetwork-2.1.0/visNetwork/man/visNetworkEditor.Rd | 88 visNetwork-2.1.0/visNetwork/man/visNodes.Rd | 411 visNetwork-2.1.0/visNetwork/man/visOptions.Rd | 517 - visNetwork-2.1.0/visNetwork/man/visPhysics.Rd | 232 visNetwork-2.1.0/visNetwork/man/visRedraw.Rd | 64 visNetwork-2.1.0/visNetwork/man/visRemoveEdges.Rd | 76 visNetwork-2.1.0/visNetwork/man/visRemoveNodes.Rd | 76 visNetwork-2.1.0/visNetwork/man/visSave.Rd | 90 visNetwork-2.1.0/visNetwork/man/visSelectEdges.Rd | 68 visNetwork-2.1.0/visNetwork/man/visSelectNodes.Rd | 76 visNetwork-2.1.0/visNetwork/man/visSetData.Rd | 72 visNetwork-2.1.0/visNetwork/man/visSetOptions.Rd | 74 visNetwork-2.1.0/visNetwork/man/visSetSelection.Rd | 98 visNetwork-2.1.0/visNetwork/man/visSetTitle.Rd | 106 visNetwork-2.1.0/visNetwork/man/visStabilize.Rd | 68 visNetwork-2.1.0/visNetwork/man/visStartSimulation.Rd | 58 visNetwork-2.1.0/visNetwork/man/visStopSimulation.Rd | 58 visNetwork-2.1.0/visNetwork/man/visStorePositions.Rd | 64 visNetwork-2.1.0/visNetwork/man/visTree.Rd | 394 visNetwork-2.1.0/visNetwork/man/visTreeEditor.Rd | 70 visNetwork-2.1.0/visNetwork/man/visUnselectAll.Rd | 64 visNetwork-2.1.0/visNetwork/man/visUpdateEdges.Rd | 92 visNetwork-2.1.0/visNetwork/man/visUpdateNodes.Rd | 94 visNetwork-2.1.0/visNetwork/vignettes/Introduction-to-visNetwork.Rmd | 21 139 files changed, 14271 insertions(+), 10014 deletions(-)
Title: R Package Installation from Remote Repositories, Including
'GitHub'
Description: Download and install R packages stored in 'GitHub', 'GitLab',
'Bitbucket', 'Bioconductor', or plain 'subversion' or 'git' repositories.
This package provides the 'install_*' functions in 'devtools'. Indeed most
of the code was copied over from 'devtools'.
Author: Jim Hester [aut, cre],
Gábor Csárdi [aut],
Hadley Wickham [aut],
Winston Chang [aut],
RStudio [cph],
Martin Morgan [aut],
Dan Tenenbaum [aut],
Mango Solutions [cph]
Maintainer: Jim Hester <jim.hester@rstudio.com>
Diff between remotes versions 2.4.0 dated 2021-06-02 and 2.4.1 dated 2021-09-29
DESCRIPTION | 6 +- MD5 | 36 +++++++-------- NEWS.md | 10 ++++ R/bioc-standalone.R | 4 + R/github.R | 13 ++--- R/install-bioc.R | 2 R/install-git.R | 46 ++++++++++++++++++-- R/install-github.R | 6 +- R/install.R | 2 R/submodule.R | 2 README.md | 2 build/vignette.rds |binary inst/doc/dependencies.html | 4 - inst/install-github.R | 75 +++++++++++++++++++++++++-------- man/github_refs.Rd | 5 +- man/install_github.Rd | 2 tests/testthat/github-error-local.txt | 2 tests/testthat/github-error-travis.txt | 2 tests/testthat/test-install-git.R | 46 ++++++++++++++++++++ 19 files changed, 203 insertions(+), 62 deletions(-)
Title: National Statistical Office of Mongolia's Open Data API Handler
Description: National Statistical Office of Mongolia (NSO) is the national statistical service and an organization of Mongolian government. NSO provides open access to official data via its API <http://opendata.1212.mn/en/doc>. The package NSO1212 has functions for accessing the API service. The functions are compatible with the API v2.0 and get data sets and its detailed informations from the API.
Author: Makhgal Ganbold [aut, cre]
Maintainer: Makhgal Ganbold <makhgal@seas.num.edu.mn>
Diff between NSO1212 versions 1.3.0 dated 2021-06-22 and 1.4.0 dated 2021-09-29
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 3 +++ R/all_tables.R | 2 +- R/get_sector_info.R | 2 +- R/get_subsector_info.R | 2 +- R/get_table.R | 2 +- R/get_table_info.R | 2 +- 8 files changed, 19 insertions(+), 16 deletions(-)
Title: Non-Parametric Causal Effects of Feasible Interventions Based on
Modified Treatment Policies
Description: Non-parametric estimators for casual effects based on longitudinal modified treatment
policies as described in Diaz, Williams, Hoffman, and Schenck <doi:10.1080/01621459.2021.1955691>, traditional point treatment,
and traditional longitudinal effects. Continuous, binary, and categorical treatments are allowed as well are
censored outcomes. The treatment mechanism is estimated via a density ratio classification procedure
irrespective of treatment variable type. For both continuous and binary outcomes, additive treatment effects
can be calculated and relative risks and odds ratios may be calculated for binary outcomes.
Author: Nicholas Williams [aut, cre, cph]
(<https://orcid.org/0000-0002-1378-4831>),
Iván Díaz [aut, cph] (<https://orcid.org/0000-0001-9056-2047>)
Maintainer: Nicholas Williams <ntwilliams.personal@gmail.com>
Diff between lmtp versions 0.9.1 dated 2021-08-18 and 1.0.0 dated 2021-09-29
DESCRIPTION | 8 MD5 | 70 ++-- NEWS.md | 21 + R/checks-warnings.R | 113 ++++-- R/contrasts.R | 65 ++- R/cross-fit.R | 183 +++++++--- R/data.R | 1 R/estimators.R | 230 ++++++++----- R/m-engine.R | 214 ++++++++---- R/nodelist.R | 42 +- R/prepare-estimators.R | 131 ++++--- R/r-engine.R | 125 +++---- R/shift.R | 6 R/sl.R | 10 R/theta.R | 136 ++++---- R/utils.R | 87 +++-- R/zzz.R | 2 README.md | 69 ++-- data/sim_point_surv.rda |binary inst/doc/getting-started.R | 55 +-- inst/doc/getting-started.Rmd | 61 +-- inst/doc/getting-started.html | 456 ++++++++++++++++++++------- man/event_locf.Rd | 2 man/lmtp-package.Rd | 4 man/lmtp_contrast.Rd | 75 ++-- man/lmtp_ipw.Rd | 334 +++++++++---------- man/lmtp_sdr.Rd | 323 +++++++++---------- man/lmtp_sub.Rd | 305 ++++++++---------- man/lmtp_tmle.Rd | 315 ++++++++---------- man/sim_point_surv.Rd | 1 tests/testthat/test-censoring.R | 14 tests/testthat/test-checks.R | 16 tests/testthat/test-point_treatment.R | 57 +-- tests/testthat/test-survey.R | 61 +-- tests/testthat/test-time_varying_treatment.R | 73 ++-- vignettes/getting-started.Rmd | 61 +-- 36 files changed, 2085 insertions(+), 1641 deletions(-)
Title: Bayesian Multilevel Mediation
Description: Easy estimation of Bayesian multilevel mediation models with Stan.
Author: Matti Vuorre [aut, cre] (<https://orcid.org/0000-0001-5052-066X>)
Maintainer: Matti Vuorre <matti.vuorre@oii.ox.ac.uk>
Diff between bmlm versions 1.3.11 dated 2019-02-21 and 1.3.12 dated 2021-09-29
bmlm-1.3.11/bmlm/cleanup |only bmlm-1.3.11/bmlm/cleanup.win |only bmlm-1.3.11/bmlm/exec |only bmlm-1.3.11/bmlm/inst/chunks/common_functions.stan |only bmlm-1.3.11/bmlm/inst/chunks/data.stan |only bmlm-1.3.11/bmlm/inst/chunks/generated_quantities.stan |only bmlm-1.3.11/bmlm/inst/chunks/model.stan |only bmlm-1.3.11/bmlm/inst/chunks/parameters.stan |only bmlm-1.3.11/bmlm/inst/chunks/transformed_data.stan |only bmlm-1.3.11/bmlm/inst/chunks/transformed_parameters.stan |only bmlm-1.3.11/bmlm/man/bmlm.Rd |only bmlm-1.3.11/bmlm/src/Modules.cpp |only bmlm-1.3.11/bmlm/src/RcppExports.cpp |only bmlm-1.3.11/bmlm/src/include |only bmlm-1.3.11/bmlm/tools |only bmlm-1.3.12/bmlm/DESCRIPTION | 23 ++-- bmlm-1.3.12/bmlm/MD5 | 70 +++++++-------- bmlm-1.3.12/bmlm/NAMESPACE | 5 - bmlm-1.3.12/bmlm/NEWS.md | 4 bmlm-1.3.12/bmlm/R/bmlm-package.R | 7 + bmlm-1.3.12/bmlm/R/data.R | 4 bmlm-1.3.12/bmlm/R/stanmodels.R | 60 ++++-------- bmlm-1.3.12/bmlm/README.md | 16 +-- bmlm-1.3.12/bmlm/build |only bmlm-1.3.12/bmlm/configure |only bmlm-1.3.12/bmlm/configure.win |only bmlm-1.3.12/bmlm/inst/include |only bmlm-1.3.12/bmlm/inst/stan |only bmlm-1.3.12/bmlm/man/BLch9.Rd | 6 - bmlm-1.3.12/bmlm/man/MEC2010.Rd | 10 +- bmlm-1.3.12/bmlm/man/bmlm-package.Rd |only bmlm-1.3.12/bmlm/man/isolate.Rd | 3 bmlm-1.3.12/bmlm/man/mlm.Rd | 12 ++ bmlm-1.3.12/bmlm/man/mlm_pars_plot.Rd | 13 ++ bmlm-1.3.12/bmlm/man/mlm_path_plot.Rd | 15 ++- bmlm-1.3.12/bmlm/man/mlm_spaghetti_plot.Rd | 23 ++++ bmlm-1.3.12/bmlm/man/mlm_summary.Rd | 8 + bmlm-1.3.12/bmlm/src/Makevars | 8 + bmlm-1.3.12/bmlm/src/Makevars.win | 7 + bmlm-1.3.12/bmlm/src/init.cpp | 2 bmlm-1.3.12/bmlm/src/stanExports_bmlm.cc |only bmlm-1.3.12/bmlm/src/stanExports_bmlm.h |only bmlm-1.3.12/bmlm/src/stanExports_bmlm_binary_y.cc |only bmlm-1.3.12/bmlm/src/stanExports_bmlm_binary_y.h |only 44 files changed, 173 insertions(+), 123 deletions(-)
Title: Create and Manipulate BioCompute Objects
Description: Tools to create, validate, and export BioCompute Objects
described in King et al. (2019) <doi:10.17605/osf.io/h59uh>.
Users can encode information in data frames, and compose
BioCompute Objects from the domains defined by the standard.
A checksum validator and a JSON schema validator are provided.
This package also supports exporting BioCompute Objects as JSON,
PDF, HTML, or 'Word' documents, and exporting to cloud-based platforms.
Author: Jeffrey Grover [aut, cre] (<https://orcid.org/0000-0001-6246-1767>),
Soner Koc [aut] (<https://orcid.org/0000-0002-0772-6600>),
Nan Xiao [aut] (<https://orcid.org/0000-0002-0250-5673>),
Dennis Dean [aut] (<https://orcid.org/0000-0002-7621-9717>),
Seven Bridges Genomics [cph, fnd]
Maintainer: Jeffrey Grover <jeffrey.grover@sevenbridges.com>
Diff between biocompute versions 1.0.4 dated 2020-10-16 and 1.0.6 dated 2021-09-29
DESCRIPTION | 19 MD5 | 34 - NEWS.md | 12 R/compose-error.R | 2 R/compose-parametric.R | 2 R/compose-top-level-fields.R | 2 R/compose-usability.R | 2 R/validate-checksum.R | 2 README.md | 4 build/vignette.rds |binary inst/doc/case-study.html | 1166 ++++++++++++++++++++++++------------------- inst/doc/intro.html | 642 +++++++++++++---------- man/biocompute-package.Rd | 5 man/compose_error.Rd | 2 man/compose_parametric.Rd | 2 man/compose_tlf.Rd | 2 man/compose_usability.Rd | 2 man/validate_checksum.Rd | 2 18 files changed, 1083 insertions(+), 819 deletions(-)
Title: Algorithms for Quantitative Pedology
Description: The Algorithms for Quantitative Pedology (AQP) project was started in 2009 to organize a loosely-related set of concepts and source code on the topic of soil profile visualization, aggregation, and classification into this package (aqp). Over the past 8 years, the project has grown into a suite of related R packages that enhance and simplify the quantitative analysis of soil profile data. Central to the AQP project is a new vocabulary of specialized functions and data structures that can accommodate the inherent complexity of soil profile information; freeing the scientist to focus on ideas rather than boilerplate data processing tasks <doi:10.1016/j.cageo.2012.10.020>. These functions and data structures have been extensively tested and documented, applied to projects involving hundreds of thousands of soil profiles, and deeply integrated into widely used tools such as SoilWeb <https://casoilresource.lawr.ucdavis.edu/soilweb-apps/>. Components of the AQP project (aqp, soilDB, sharpshootR, soilReports packages) serve an important role in routine data analysis within the USDA-NRCS Soil Science Division. The AQP suite of R packages offer a convenient platform for bridging the gap between pedometric theory and practice.
Author: Dylan Beaudette [aut, cre],
Pierre Roudier [aut, ctb],
Andrew Brown [aut, ctb]
Maintainer: Dylan Beaudette <dylan.beaudette@usda.gov>
Diff between aqp versions 1.31 dated 2021-08-19 and 1.32 dated 2021-09-29
aqp-1.31/aqp/man/guessHzDesgnName.Rd |only aqp-1.31/aqp/man/guessHzTexClName.Rd |only aqp-1.31/aqp/man/hzdesgnname-set.Rd |only aqp-1.31/aqp/man/hztexclname-set.Rd |only aqp-1.32/aqp/DESCRIPTION | 10 aqp-1.32/aqp/MD5 | 130 ++- aqp-1.32/aqp/NAMESPACE | 1 aqp-1.32/aqp/NEWS.md | 9 aqp-1.32/aqp/R/Class-SoilProfileCollection.R | 339 +--------- aqp-1.32/aqp/R/L1_profiles.R | 3 aqp-1.32/aqp/R/SoilProfileCollection-metadata.R |only aqp-1.32/aqp/R/SoilProfileCollection-methods.R | 20 aqp-1.32/aqp/R/SoilProfileCollection-operators.R | 14 aqp-1.32/aqp/R/SoilProfileCollection-slice-methods.R | 2 aqp-1.32/aqp/R/accumulateDepths.R |only aqp-1.32/aqp/R/colorChart.R | 228 ++++-- aqp-1.32/aqp/R/colorContrast.R | 49 + aqp-1.32/aqp/R/combine.R | 18 aqp-1.32/aqp/R/data-documentation.R | 15 aqp-1.32/aqp/R/depthOf.R | 2 aqp-1.32/aqp/R/estimateAWC.R | 8 aqp-1.32/aqp/R/estimatePSCS.R | 2 aqp-1.32/aqp/R/estimateSoilDepth.R | 35 - aqp-1.32/aqp/R/getCambicBounds.R | 4 aqp-1.32/aqp/R/getSurfaceHorizonDepth.R | 10 aqp-1.32/aqp/R/guessColumnNames.R | 220 +++--- aqp-1.32/aqp/R/harmonize.R | 2 aqp-1.32/aqp/R/huePosition.R | 120 ++- aqp-1.32/aqp/R/huePositionCircle.R |only aqp-1.32/aqp/R/invertLabelColor.R | 21 aqp-1.32/aqp/R/munsell2rgb.R | 183 ----- aqp-1.32/aqp/R/parseMunsell.R |only aqp-1.32/aqp/R/perturb.R | 3 aqp-1.32/aqp/R/plotSPC.R | 68 +- aqp-1.32/aqp/R/rebuildSPC.R | 12 aqp-1.32/aqp/R/soilColorIndices.R | 24 aqp-1.32/aqp/R/spc2mpspline.R | 6 aqp-1.32/aqp/build/partial.rdb |binary aqp-1.32/aqp/data/datalist | 1 aqp-1.32/aqp/data/munsellHuePosition.rda |only aqp-1.32/aqp/man/SoilProfileCollection-plotting-methods.Rd | 6 aqp-1.32/aqp/man/accumulateDepths.Rd |only aqp-1.32/aqp/man/barron.torrent.redness.LAB.Rd | 2 aqp-1.32/aqp/man/buntley.westin.index.Rd | 2 aqp-1.32/aqp/man/colorChart.Rd | 17 aqp-1.32/aqp/man/colorContrast.Rd | 20 aqp-1.32/aqp/man/depth_units.Rd | 1 aqp-1.32/aqp/man/getCambicBounds.Rd | 4 aqp-1.32/aqp/man/getSurfaceHorizonDepth.Rd | 2 aqp-1.32/aqp/man/guessHzAttrName.Rd | 41 + aqp-1.32/aqp/man/harden.melanization.Rd | 2 aqp-1.32/aqp/man/horizonColorIndices.Rd | 2 aqp-1.32/aqp/man/huePosition.Rd | 59 + aqp-1.32/aqp/man/huePositionCircle.Rd |only aqp-1.32/aqp/man/hurst.redness.Rd | 2 aqp-1.32/aqp/man/hzDesgn.Rd | 2 aqp-1.32/aqp/man/hzdesgnname.Rd | 41 + aqp-1.32/aqp/man/hztexclname.Rd | 38 - aqp-1.32/aqp/man/invertLabelColor.Rd | 14 aqp-1.32/aqp/man/munsellHuePosition.Rd |only aqp-1.32/aqp/man/parseMunsell.Rd | 6 aqp-1.32/aqp/man/show.Rd | 10 aqp-1.32/aqp/man/spc2mpspline-SoilProfileCollection-method.Rd | 2 aqp-1.32/aqp/man/subset-SoilProfileCollection-method.Rd | 10 aqp-1.32/aqp/man/thompson.bell.darkness.Rd | 4 aqp-1.32/aqp/tests/testthat/Rplots.pdf |binary aqp-1.32/aqp/tests/testthat/test-SoilProfileCollection-metadata.R |only aqp-1.32/aqp/tests/testthat/test-accumulateDepths.R |only aqp-1.32/aqp/tests/testthat/test-color-conversion.R | 7 aqp-1.32/aqp/tests/testthat/test-colorContrast.R | 65 + aqp-1.32/aqp/tests/testthat/test-colorIndices.R | 9 aqp-1.32/aqp/tests/testthat/test-huePosition.R |only aqp-1.32/aqp/tests/testthat/test-invertLabelColor.R |only aqp-1.32/aqp/tests/testthat/test-plotSPC.R | 1 74 files changed, 973 insertions(+), 955 deletions(-)
Title: Affluence (Richness) Indices
Description: Enables to compute the statistical indices of affluence (richness) with bootstrap errors, and inequality and polarization indices. Moreover, gives the possibility of calculation of Medeiros affluence line.
Author: Alicja Wolny-Dominiak and Anna Saczewska-Piotrowska
Maintainer: Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>
Diff between affluenceIndex versions 1.0 dated 2017-03-23 and 2.0 dated 2021-09-29
affluenceIndex-1.0/affluenceIndex/R/boot.r1.R |only affluenceIndex-1.0/affluenceIndex/R/boot.r2.R |only affluenceIndex-1.0/affluenceIndex/R/gap.R |only affluenceIndex-1.0/affluenceIndex/man/boot.r1.Rd |only affluenceIndex-1.0/affluenceIndex/man/boot.r2.Rd |only affluenceIndex-1.0/affluenceIndex/man/gap.Rd |only affluenceIndex-2.0/affluenceIndex/DESCRIPTION | 15 +- affluenceIndex-2.0/affluenceIndex/MD5 | 62 ++++++---- affluenceIndex-2.0/affluenceIndex/NAMESPACE | 2 affluenceIndex-2.0/affluenceIndex/R/S90S40.R |only affluenceIndex-2.0/affluenceIndex/R/boot.sd1.R |only affluenceIndex-2.0/affluenceIndex/R/boot.sd1.sub.R |only affluenceIndex-2.0/affluenceIndex/R/boot.sd2.R |only affluenceIndex-2.0/affluenceIndex/R/boot.sd2.sub.R |only affluenceIndex-2.0/affluenceIndex/R/gini.w.R |only affluenceIndex-2.0/affluenceIndex/R/line.med.R |only affluenceIndex-2.0/affluenceIndex/R/polar.aff.R | 24 +-- affluenceIndex-2.0/affluenceIndex/R/r.cha.R | 26 +--- affluenceIndex-2.0/affluenceIndex/R/r.cha.sub.R |only affluenceIndex-2.0/affluenceIndex/R/r.fgt.R | 24 +-- affluenceIndex-2.0/affluenceIndex/R/r.fgt.sub.R |only affluenceIndex-2.0/affluenceIndex/R/r.hc.R | 17 +- affluenceIndex-2.0/affluenceIndex/R/r.hc.sub.R |only affluenceIndex-2.0/affluenceIndex/R/r.is.R | 13 +- affluenceIndex-2.0/affluenceIndex/R/r.is.sub.R |only affluenceIndex-2.0/affluenceIndex/R/r.med.R |only affluenceIndex-2.0/affluenceIndex/R/r.med.sub.R |only affluenceIndex-2.0/affluenceIndex/data/affluence.rda |binary affluenceIndex-2.0/affluenceIndex/man/S90S40.Rd |only affluenceIndex-2.0/affluenceIndex/man/affluence.Rd | 5 affluenceIndex-2.0/affluenceIndex/man/affluenceIndex-package.Rd | 38 ++++-- affluenceIndex-2.0/affluenceIndex/man/boot.sd1.Rd |only affluenceIndex-2.0/affluenceIndex/man/boot.sd1.sub.Rd |only affluenceIndex-2.0/affluenceIndex/man/boot.sd2.Rd |only affluenceIndex-2.0/affluenceIndex/man/boot.sd2.sub.Rd |only affluenceIndex-2.0/affluenceIndex/man/gini.w.Rd |only affluenceIndex-2.0/affluenceIndex/man/line.med.Rd |only affluenceIndex-2.0/affluenceIndex/man/polar.aff.Rd | 31 ++--- affluenceIndex-2.0/affluenceIndex/man/r.cha.Rd | 21 +-- affluenceIndex-2.0/affluenceIndex/man/r.cha.sub.Rd |only affluenceIndex-2.0/affluenceIndex/man/r.fgt.Rd | 16 +- affluenceIndex-2.0/affluenceIndex/man/r.fgt.sub.Rd |only affluenceIndex-2.0/affluenceIndex/man/r.hc.Rd | 26 ++-- affluenceIndex-2.0/affluenceIndex/man/r.hc.sub.Rd |only affluenceIndex-2.0/affluenceIndex/man/r.is.Rd | 28 ++-- affluenceIndex-2.0/affluenceIndex/man/r.is.sub.Rd |only affluenceIndex-2.0/affluenceIndex/man/r.med.Rd |only affluenceIndex-2.0/affluenceIndex/man/r.med.sub.Rd |only 48 files changed, 183 insertions(+), 165 deletions(-)
More information about affluenceIndex at CRAN
Permanent link
Title: 'dplyr'-Like Syntax for Summary Statistics of Survey Data
Description: Use piping, verbs like 'group_by' and 'summarize', and other
'dplyr' inspired syntactic style when calculating summary statistics on survey
data using functions from the 'survey' package.
Author: Greg Freedman Ellis [aut, cre],
Thomas Lumley [ctb],
Tomasz Żółtak [ctb],
Ben Schneider [aut, ctb],
Pavel N. Krivitsky [ctb]
Maintainer: Greg Freedman Ellis <greg.freedman@gmail.com>
Diff between srvyr versions 1.0.1 dated 2021-03-28 and 1.1.0 dated 2021-09-29
DESCRIPTION | 14 MD5 | 68 ++- NAMESPACE | 554 ++++++++++++++++--------------- NEWS.md | 7 R/interaction.R |only R/join.R |only R/subset_svy_vars.R | 6 R/summarise.r | 82 +++- R/survey_statistics.r | 204 +++++++++-- R/survey_statistics_helpers.R | 41 ++ R/svy_context.R | 2 R/utils.r | 5 README.md | 130 ++++++- build/vignette.rds |binary inst/doc/extending-srvyr.R | 2 inst/doc/extending-srvyr.Rmd | 6 inst/doc/extending-srvyr.html | 51 +- inst/doc/srvyr-database.html | 65 ++- inst/doc/srvyr-vs-survey.R | 72 +++- inst/doc/srvyr-vs-survey.Rmd | 191 +++++++++- inst/doc/srvyr-vs-survey.html | 246 +++++++++++-- man/as_srvyr_result_df.Rd |only man/cur_svy.Rd | 2 man/dplyr_filter_joins.Rd |only man/interact.Rd |only man/srvyr_interaction.Rd |only man/summarise.Rd | 45 +- man/survey_mean.Rd | 33 + man/survey_old_quantile.Rd |only man/survey_quantile.Rd | 43 +- man/uninteract.Rd |only man/unweighted.Rd | 7 tests/testthat/test-interaction.R |only tests/testthat/test_as_survey_twophase.r | 13 tests/testthat/test_dplyr_verbs.R | 29 + tests/testthat/test_joins.R |only tests/testthat/test_survey_statistics.r | 388 ++++++++++++++++++--- tests/testthat/utilities.R | 15 vignettes/extending-srvyr.Rmd | 6 vignettes/srvyr-vs-survey.Rmd | 191 +++++++++- 40 files changed, 1860 insertions(+), 658 deletions(-)
Title: Estimate Split-Half Reliabilities
Description: Estimates split-half reliabilities for scoring algorithms of cognitive tasks and questionnaires. The 'splithalfr' supports researcher-provided scoring algorithms, with six vignettes illustrating how on included datasets. The package provides four splitting methods (first-second, odd-even, permutated, Monte Carlo), the option to stratify splits by task design, a number of reliability coefficients, and the option to sub-sample data.
Author: Thomas Pronk [aut, cre]
Maintainer: Thomas Pronk <pronkthomas@gmail.com>
Diff between splithalfr versions 2.1.1 dated 2021-06-25 and 2.2.0 dated 2021-09-29
DESCRIPTION | 10 +-- MD5 | 52 ++++++++-------- R/splithalfr.R | 3 R/splitting.R | 97 ++++++++++++++++++------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/aat_double_diff_of_medians.Rmd | 4 - inst/doc/aat_double_diff_of_medians.html | 4 - inst/doc/gng_dprime.Rmd | 6 - inst/doc/gng_dprime.html | 6 - inst/doc/iat_dscore_ri.Rmd | 6 - inst/doc/iat_dscore_ri.html | 6 - inst/doc/rapi_sum.Rmd | 6 - inst/doc/rapi_sum.html | 6 - inst/doc/sst_ssrti.Rmd | 6 - inst/doc/sst_ssrti.html | 6 - inst/doc/vpt_diff_of_means.Rmd | 6 - inst/doc/vpt_diff_of_means.html | 6 - man/get_split_indexes_from_stratum.Rd | 18 ----- man/splithalfr.Rd | 3 tests/testthat/test-splitting.R | 19 +++--- vignettes/aat_double_diff_of_medians.Rmd | 4 - vignettes/gng_dprime.Rmd | 6 - vignettes/iat_dscore_ri.Rmd | 6 - vignettes/rapi_sum.Rmd | 6 - vignettes/sst_ssrti.Rmd | 6 - vignettes/vpt_diff_of_means.Rmd | 6 - 27 files changed, 157 insertions(+), 147 deletions(-)
Title: Summary Tables and Plots for Statistical Models and Data:
Beautiful, Customizable, and Publication-Ready
Description: Create beautiful and customizable tables to summarize several
statistical models side-by-side. Draw coefficient plots, multi-level
cross-tabs, dataset summaries, balance tables (a.k.a. "Table 1s"), and
correlation matrices. This package supports dozens of statistical models,
and it can produce tables in HTML, LaTeX, Word, Markdown, PDF, PowerPoint,
Excel, RTF, JPG, or PNG. Tables can easily be embedded in 'Rmarkdown' or
'knitr' dynamic documents.
Author: Vincent Arel-Bundock [aut, cre]
(<https://orcid.org/0000-0003-2042-7063>),
Joachim Gassen [ctb] (<https://orcid.org/0000-0003-4364-2911>),
Nathan Eastwood [ctb],
Nick Huntington-Klein [ctb] (<https://orcid.org/0000-0002-7352-3991>),
Moritz Schwarz [ctb] (<https://orcid.org/0000-0003-0340-3780>),
Benjamin Elbers [ctb] (0000-0001-5392-3448),
Grant McDermott [ctb] (<https://orcid.org/0000-0001-7883-8573>)
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between modelsummary versions 0.9.0 dated 2021-08-12 and 0.9.2 dated 2021-09-29
modelsummary-0.9.0/modelsummary/R/bind.R |only modelsummary-0.9.0/modelsummary/man/glance_custom_internal.fixest.Rd |only modelsummary-0.9.0/modelsummary/tests/testthat/test-na.R |only modelsummary-0.9.2/modelsummary/DESCRIPTION | 45 - modelsummary-0.9.2/modelsummary/MD5 | 156 ++- modelsummary-0.9.2/modelsummary/NEWS.md | 26 modelsummary-0.9.2/modelsummary/R/datasummary.R | 1 modelsummary-0.9.2/modelsummary/R/datasummary_balance.R | 413 ++++----- modelsummary-0.9.2/modelsummary/R/datasummary_correlation.R | 20 modelsummary-0.9.2/modelsummary/R/datasummary_crosstab.R | 1 modelsummary-0.9.2/modelsummary/R/datasummary_skim.R | 3 modelsummary-0.9.2/modelsummary/R/factory_kableExtra.R | 13 modelsummary-0.9.2/modelsummary/R/format_gof.R | 12 modelsummary-0.9.2/modelsummary/R/get_estimates.R | 8 modelsummary-0.9.2/modelsummary/R/get_gof.R | 4 modelsummary-0.9.2/modelsummary/R/get_vcov.R | 17 modelsummary-0.9.2/modelsummary/R/glance_custom.R | 31 modelsummary-0.9.2/modelsummary/R/gof_map.R | 7 modelsummary-0.9.2/modelsummary/R/methods_did.R |only modelsummary-0.9.2/modelsummary/R/methods_estimatr.R |only modelsummary-0.9.2/modelsummary/R/methods_fixest.R |only modelsummary-0.9.2/modelsummary/R/methods_lfe.R |only modelsummary-0.9.2/modelsummary/R/modelplot.R | 2 modelsummary-0.9.2/modelsummary/R/modelsummary.R | 190 ---- modelsummary-0.9.2/modelsummary/R/poorman.R |only modelsummary-0.9.2/modelsummary/R/sanitize_output.R | 56 - modelsummary-0.9.2/modelsummary/R/sanity_checks.R | 29 modelsummary-0.9.2/modelsummary/R/settings.R | 2 modelsummary-0.9.2/modelsummary/build/modelsummary.pdf |binary modelsummary-0.9.2/modelsummary/inst/WORDLIST | 1 modelsummary-0.9.2/modelsummary/man/datasummary.Rd | 56 + modelsummary-0.9.2/modelsummary/man/datasummary_balance.Rd | 56 + modelsummary-0.9.2/modelsummary/man/datasummary_correlation.Rd | 105 ++ modelsummary-0.9.2/modelsummary/man/datasummary_crosstab.Rd | 56 + modelsummary-0.9.2/modelsummary/man/datasummary_skim.Rd | 56 + modelsummary-0.9.2/modelsummary/man/dsummary.Rd | 56 + modelsummary-0.9.2/modelsummary/man/get_estimates.Rd | 2 modelsummary-0.9.2/modelsummary/man/get_vcov.Rd |only modelsummary-0.9.2/modelsummary/man/modelplot.Rd | 2 modelsummary-0.9.2/modelsummary/man/modelsummary.Rd | 103 +- modelsummary-0.9.2/modelsummary/man/modelsummary_wide.Rd | 2 modelsummary-0.9.2/modelsummary/man/msummary.Rd | 103 +- modelsummary-0.9.2/modelsummary/tests/testthat/_snaps |only modelsummary-0.9.2/modelsummary/tests/testthat/helper-requiet.R |only modelsummary-0.9.2/modelsummary/tests/testthat/known_output/msummary_fixest_i.md |only modelsummary-0.9.2/modelsummary/tests/testthat/known_output/output-file.docx |only modelsummary-0.9.2/modelsummary/tests/testthat/known_output/output-file.jpg |binary modelsummary-0.9.2/modelsummary/tests/testthat/known_output/output-file.png |only modelsummary-0.9.2/modelsummary/tests/testthat/known_output/output-file.pptx |only modelsummary-0.9.2/modelsummary/tests/testthat/known_output/output-file.rtf | 417 +++++----- modelsummary-0.9.2/modelsummary/tests/testthat/known_output/output-file.tex | 28 modelsummary-0.9.2/modelsummary/tests/testthat/known_output/output_1.tex | 26 modelsummary-0.9.2/modelsummary/tests/testthat/test-add_columns.R | 6 modelsummary-0.9.2/modelsummary/tests/testthat/test-add_rows.R | 18 modelsummary-0.9.2/modelsummary/tests/testthat/test-bad-input.R | 7 modelsummary-0.9.2/modelsummary/tests/testthat/test-custom.R | 8 modelsummary-0.9.2/modelsummary/tests/testthat/test-datasummary.R | 36 modelsummary-0.9.2/modelsummary/tests/testthat/test-datasummary_balance.R | 34 modelsummary-0.9.2/modelsummary/tests/testthat/test-datasummary_correlation.R | 43 - modelsummary-0.9.2/modelsummary/tests/testthat/test-datasummary_skim.R | 5 modelsummary-0.9.2/modelsummary/tests/testthat/test-escape.R | 145 +-- modelsummary-0.9.2/modelsummary/tests/testthat/test-get_vcov_type.R | 53 + modelsummary-0.9.2/modelsummary/tests/testthat/test-group.R | 60 - modelsummary-0.9.2/modelsummary/tests/testthat/test-gt.R | 25 modelsummary-0.9.2/modelsummary/tests/testthat/test-html.R | 8 modelsummary-0.9.2/modelsummary/tests/testthat/test-huxtable.R | 23 modelsummary-0.9.2/modelsummary/tests/testthat/test-interaction.R | 14 modelsummary-0.9.2/modelsummary/tests/testthat/test-kableExtra.R | 16 modelsummary-0.9.2/modelsummary/tests/testthat/test-latex.R | 8 modelsummary-0.9.2/modelsummary/tests/testthat/test-mathmode.R | 37 modelsummary-0.9.2/modelsummary/tests/testthat/test-missing.R |only modelsummary-0.9.2/modelsummary/tests/testthat/test-modelplot.R | 22 modelsummary-0.9.2/modelsummary/tests/testthat/test-modelsummary_list.R | 8 modelsummary-0.9.2/modelsummary/tests/testthat/test-modelsummary_wide.R | 14 modelsummary-0.9.2/modelsummary/tests/testthat/test-options.R |only modelsummary-0.9.2/modelsummary/tests/testthat/test-rmarkdown.R | 39 modelsummary-0.9.2/modelsummary/tests/testthat/test-statistic_override.R | 10 modelsummary-0.9.2/modelsummary/tests/testthat/test-vcov.R | 80 + 78 files changed, 1584 insertions(+), 1240 deletions(-)
Title: Linked Micromap Plots
Description: This group of functions simplifies the creation of linked micromap
plots.
Author: Quinn Payton [aut],
Tony Olsen [aut],
Marc Weber [ctb],
Michael McManus [ctb],
Tom Kincaid [ctb],
Marcus W. Beck [cre, ctb]
Maintainer: Marcus W. Beck <mbeck@tbep.org>
Diff between micromap versions 1.9.4 dated 2020-09-02 and 1.9.5 dated 2021-09-29
DESCRIPTION | 10 +- MD5 | 10 +- NAMESPACE | 2 R/mmPlot.r | 30 ++++++++ inst/NEWS.Rd | 14 ++++ man/mmplot.Rd | 197 ++++++++++++++++++++++++++++++++++++++++++---------------- 6 files changed, 199 insertions(+), 64 deletions(-)
Title: Download Geographic Data
Description: Functions for downloading of geographic data for use in spatial data analysis and mapping. The package facilitates access to climate, elevation, soil, species occurrence, and administrative boundary data.
Author: Robert J. Hijmans [cre, aut], Aniruddha Ghosh [ctb], Alex Mandel [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between geodata versions 0.2-3 dated 2021-05-31 and 0.3-2 dated 2021-09-29
geodata-0.2-3/geodata/R/soil.R |only geodata-0.2-3/geodata/man/soil.Rd |only geodata-0.3-2/geodata/DESCRIPTION | 11 ++++--- geodata-0.3-2/geodata/MD5 | 33 ++++++++++++++++------- geodata-0.3-2/geodata/R/countries.R | 2 - geodata-0.3-2/geodata/R/crop_sacks.R |only geodata-0.3-2/geodata/R/crop_spam.R |only geodata-0.3-2/geodata/R/crops_monfreda.R |only geodata-0.3-2/geodata/R/gadm.R | 4 ++ geodata-0.3-2/geodata/R/helper-functions.R | 4 +- geodata-0.3-2/geodata/R/occurrence.R | 8 ++--- geodata-0.3-2/geodata/R/pop.R |only geodata-0.3-2/geodata/R/soil_afsis.R |only geodata-0.3-2/geodata/R/soil_grids.R |only geodata-0.3-2/geodata/R/soil_isda.R |only geodata-0.3-2/geodata/R/zzz.R |only geodata-0.3-2/geodata/build/partial.rdb |binary geodata-0.3-2/geodata/man/crop_calendar_Sachs.Rd |only geodata-0.3-2/geodata/man/crop_monfreda.Rd |only geodata-0.3-2/geodata/man/crop_spam.Rd |only geodata-0.3-2/geodata/man/landuse.Rd | 15 +++++----- geodata-0.3-2/geodata/man/population.Rd |only geodata-0.3-2/geodata/man/soil_af.Rd |only geodata-0.3-2/geodata/man/soil_af_elements.Rd |only geodata-0.3-2/geodata/man/soil_af_isda.Rd |only geodata-0.3-2/geodata/man/soil_grids.Rd |only geodata-0.3-2/geodata/man/soil_grids_vsi.Rd |only 27 files changed, 48 insertions(+), 29 deletions(-)