Title: Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools
Description: Using tidy data principles can make many text mining tasks
easier, more effective, and consistent with tools already in wide use.
Much of the infrastructure needed for text mining with tidy data
frames already exists in packages like 'dplyr', 'broom', 'tidyr', and
'ggplot2'. In this package, we provide functions and supporting data
sets to allow conversion of text to and from tidy formats, and to
switch seamlessly between tidy tools and existing text mining
packages.
Author: Gabriela De Queiroz [ctb],
Colin Fay [ctb] (<https://orcid.org/0000-0001-7343-1846>),
Emil Hvitfeldt [ctb],
Os Keyes [ctb] (<https://orcid.org/0000-0001-5196-609X>),
Kanishka Misra [ctb],
Tim Mastny [ctb],
Jeff Erickson [ctb],
David Robinson [aut],
Julia Silge [aut, cre] (<https://orcid.org/0000-0002-3671-836X>)
Maintainer: Julia Silge <julia.silge@gmail.com>
Diff between tidytext versions 0.3.1 dated 2021-04-10 and 0.3.2 dated 2021-09-30
DESCRIPTION | 83 +++++++++++++++++++------------ MD5 | 41 ++++++++------- NEWS.md | 4 + R/unnest_tokens.R | 6 +- build/vignette.rds |binary inst/doc/tf_idf.html | 15 ++--- inst/doc/tidying_casting.html | 71 +++++++++++++------------- inst/doc/tidytext.html | 27 +++++----- tests/testthat/_snaps |only tests/testthat/helper-funs.R | 2 tests/testthat/test-corpus-tidiers.R | 1 tests/testthat/test-dictionary-tidiers.R | 7 +- tests/testthat/test-lda-tidiers.R | 35 ++++++------- tests/testthat/test-reorder-within.R | 14 ++--- tests/testthat/test-sentiments.R | 2 tests/testthat/test-sparse-casters.R | 8 +- tests/testthat/test-sparse-tidiers.R | 7 +- tests/testthat/test-stm-tidiers.R | 55 ++++++++++---------- tests/testthat/test-stop-words.R | 6 -- tests/testthat/test-tf-idf.R | 18 ++---- tests/testthat/test-unnest-tokens.R | 41 +++++---------- 21 files changed, 225 insertions(+), 218 deletions(-)
Title: Estimating the Optimal Number of Migration Edges from 'Treemix'
Description: The popular population genetic software 'Treemix' by
'Pickrell and Pritchard' (2012) <DOI:10.1371/journal.pgen.1002967>
estimates the number of migration edges on a population tree.
However, it can be difficult to determine the number of migration
edges to include. Previously, it was customary to stop adding migration
edges when 99.8% of variation in the data was explained, but 'OptM'
automates this process using an ad hoc statistic based on the
second-order rate of change in the log likelihood. 'OptM' also
has added functionality for various threshold modeling
to compare with the ad hoc statistic.
Author: Robert Fitak [aut, cre]
Maintainer: Robert Fitak <rfitak9@gmail.com>
Diff between OptM versions 0.1.5 dated 2021-07-27 and 0.1.6 dated 2021-09-30
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- README.md | 4 +++- inst/CITATION | 17 +++++++++-------- 4 files changed, 19 insertions(+), 16 deletions(-)
Title: Efficient Least Squares for Total Causal Effects
Description: Estimate a total causal effect from observational data under
linearity and causal sufficiency. The observational data is supposed to
be generated from a linear structural equation model (SEM) with independent
and additive noise. The underlying causal DAG associated the SEM is required
to be known up to a maximally oriented partially directed graph (MPDAG),
which is a general class of graphs consisting of both directed and
undirected edges, including CPDAGs (i.e., essential graphs) and DAGs. Such
graphs are usually obtained with structure learning algorithms with added
background knowledge. The program is able to estimate every identified
effect, including single and multiple treatment variables. Moreover, the
resulting estimate has the minimal asymptotic covariance (and hence
shortest confidence intervals) among all estimators that are based on the
sample covariance.
Author: Richard Guo [aut, cre] (<https://orcid.org/0000-0002-2081-7398>)
Maintainer: Richard Guo <ricguo@uw.edu>
Diff between eff2 versions 1.0.0 dated 2021-05-21 and 1.0.1 dated 2021-09-30
DESCRIPTION | 8 - MD5 | 12 - NEWS.md | 9 - R/bucket.R | 2 README.md | 9 + build/vignette.rds |binary inst/doc/eff2-doc.html | 360 +++++++++++-------------------------------------- 7 files changed, 109 insertions(+), 291 deletions(-)
Title: HTML Widget to Show File Differences
Description: A HTML widget that shows differences between files
(text, images, and data frames).
Author: Hadley Wickham [aut, cre],
Joshua Kunst [aut],
Winston Chang [aut],
RStudio [cph, fnd],
Paul Fitzpatrick [cph] (Author of included daff.js library),
Rodrigo Fernandes [cph] (Author of included diff2html library),
JQuery Foundation [cph] (Author of included jquery library),
Kevin Decker [cph] (Author of included jsdiff library),
Matthew Holt [cph] (Author of incldued PapaParse library),
Huddle [cph] (Author of included resemble library)
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between diffviewer versions 0.1.0 dated 2020-09-10 and 0.1.1 dated 2021-09-30
diffviewer-0.1.0/diffviewer/inst/htmlwidgets/diffviewer.js |only diffviewer-0.1.0/diffviewer/inst/htmlwidgets/diffviewer.yaml |only diffviewer-0.1.1/diffviewer/DESCRIPTION | 13 ++++------ diffviewer-0.1.1/diffviewer/LICENSE | 2 - diffviewer-0.1.1/diffviewer/MD5 | 11 +++----- diffviewer-0.1.1/diffviewer/NEWS.md |only diffviewer-0.1.1/diffviewer/README.md | 6 ++-- diffviewer-0.1.1/diffviewer/inst/htmlwidgets/lib/diffviewer/diffviewer.js | 4 +++ 8 files changed, 19 insertions(+), 17 deletions(-)
Title: Miscellaneous Functions 'T. Yanagida'
Description: Miscellaneous functions for descriptive statistics (e.g., frequency table, cross tabulation, multilevel descriptive statistics, within-group and between-group correlation matrix, coefficient alpha and omega, and various effect size measures), missing data (e.g., descriptive statistics for missing data, missing data pattern, Little's test of Missing Completely at Random, and auxiliary variable analysis), data management (e.g., grand-mean and group-mean centering, recode variables and reverse code items, scale and group scores, reading and writing SPSS and Excel files), and statistical analysis (e.g., confidence intervals, collinearity diagnostics, Levene's test, t-test, z-test, and sample size determination).
Author: Takuya Yanagida [aut, cre]
Maintainer: Takuya Yanagida <takuya.yanagida@univie.ac.at>
Diff between misty versions 0.4.2 dated 2021-08-19 and 0.4.3 dated 2021-09-30
DESCRIPTION | 6 +- MD5 | 68 ++++++++++++------------- NEWS.md | 8 ++ R/as.na.R | 12 ++-- R/center.R | 22 ++++++-- R/chr.gsub.R | 19 +++---- R/chr.trim.R | 6 +- R/ci.mean.diff.R | 63 +++++++++++++++++++++-- R/collin.diag.R | 94 ++++++++++++++++++---------------- R/cor.poly.R | 75 ++++++++++++++++----------- R/crosstab.R | 6 +- R/df.duplicated.R | 23 ++++---- R/df.rbind.R | 7 +- R/df.rename.R | 2 R/freq.R | 77 ++++++++++++++++------------ R/item.omega.R | 12 ++-- R/multilevel.descript.R | 4 - R/multilevel.indirect.R | 5 + R/print.misty.object.R | 125 +++++++++++++++++++++++++++------------------- R/read.mplus.R | 41 ++++++++------- R/rec.R | 9 +-- R/run.mplus.R | 85 ++++++++++++++++++------------- R/start_message.R | 4 - R/write.mplus.R | 33 ++++++------ R/write.sav.R | 105 ++++++++++++++++++++++----------------- man/chr.gsub.Rd | 4 - man/chr.trim.Rd | 94 +++++++++++++++++----------------- man/collin.diag.Rd | 83 +++++++++++++++++++++++++++++- man/cor.poly.Rd | 4 - man/df.rbind.Rd | 129 ++++++++++++++++++++++++------------------------ man/df.rename.Rd | 88 ++++++++++++++++---------------- man/item.omega.Rd | 9 ++- man/rec.Rd | 7 +- man/run.mplus.Rd | 4 + man/write.sav.Rd | 8 +- 35 files changed, 808 insertions(+), 533 deletions(-)
Title: R Interface to 'Keras'
Description: Interface to 'Keras' <https://keras.io>, a high-level neural
networks 'API'. 'Keras' was developed with a focus on enabling fast experimentation,
supports both convolution based networks and recurrent networks (as well as
combinations of the two), and runs seamlessly on both 'CPU' and 'GPU' devices.
Author: Tomasz Kalinowski [ctb, cph, cre],
Daniel Falbel [ctb, cph],
JJ Allaire [aut, cph],
François Chollet [aut, cph],
RStudio [ctb, cph, fnd],
Google [ctb, cph, fnd],
Yuan Tang [ctb, cph] (<https://orcid.org/0000-0001-5243-233X>),
Wouter Van Der Bijl [ctb, cph],
Martin Studer [ctb, cph],
Sigrid Keydana [ctb]
Maintainer: Tomasz Kalinowski <tomasz.kalinowski@rstudio.com>
Diff between keras versions 2.6.0 dated 2021-08-21 and 2.6.1 dated 2021-09-30
keras-2.6.0/keras/R/layer-text_vectorization.R |only keras-2.6.0/keras/inst/doc/python_subclasses.R |only keras-2.6.0/keras/inst/doc/python_subclasses.Rmd |only keras-2.6.0/keras/inst/doc/python_subclasses.html |only keras-2.6.0/keras/man/get_vocabulary.Rd |only keras-2.6.0/keras/man/set_vocabulary.Rd |only keras-2.6.0/keras/tests/testthat/test-py-classes.R |only keras-2.6.0/keras/vignettes/guides |only keras-2.6.0/keras/vignettes/python_subclasses.Rmd |only keras-2.6.1/keras/DESCRIPTION | 14 keras-2.6.1/keras/MD5 | 271 +++++----- keras-2.6.1/keras/NAMESPACE | 21 keras-2.6.1/keras/NEWS.md | 85 +++ keras-2.6.1/keras/R/backend.R | 5 keras-2.6.1/keras/R/install.R | 4 keras-2.6.1/keras/R/layer-custom.R | 3 keras-2.6.1/keras/R/layer-methods.R | 23 keras-2.6.1/keras/R/layers-core.R | 67 -- keras-2.6.1/keras/R/layers-merge.R | 239 ++++---- keras-2.6.1/keras/R/layers-preprocessing.R |only keras-2.6.1/keras/R/metrics.R | 6 keras-2.6.1/keras/R/model.R | 64 ++ keras-2.6.1/keras/R/package.R | 2 keras-2.6.1/keras/R/preprocessing.R | 10 keras-2.6.1/keras/R/py-classes.R | 116 +++- keras-2.6.1/keras/R/reexports.R | 4 keras-2.6.1/keras/R/utils.R | 33 - keras-2.6.1/keras/build/vignette.rds |binary keras-2.6.1/keras/inst/doc/faq.R | 2 keras-2.6.1/keras/inst/doc/faq.Rmd | 4 keras-2.6.1/keras/inst/doc/faq.html | 4 keras-2.6.1/keras/man/Metric.Rd | 6 keras-2.6.1/keras/man/adapt.Rd | 86 ++- keras-2.6.1/keras/man/bidirectional.Rd | 5 keras-2.6.1/keras/man/clone_model.Rd | 15 keras-2.6.1/keras/man/constraints.Rd | 2 keras-2.6.1/keras/man/flow_images_from_dataframe.Rd | 2 keras-2.6.1/keras/man/install_keras.Rd | 2 keras-2.6.1/keras/man/is_keras_available.Rd | 2 keras-2.6.1/keras/man/layer_activation.Rd | 5 keras-2.6.1/keras/man/layer_activation_elu.Rd | 5 keras-2.6.1/keras/man/layer_activation_leaky_relu.Rd | 5 keras-2.6.1/keras/man/layer_activation_parametric_relu.Rd | 5 keras-2.6.1/keras/man/layer_activation_relu.Rd | 5 keras-2.6.1/keras/man/layer_activation_selu.Rd | 5 keras-2.6.1/keras/man/layer_activation_softmax.Rd | 5 keras-2.6.1/keras/man/layer_activation_thresholded_relu.Rd | 5 keras-2.6.1/keras/man/layer_activity_regularization.Rd | 5 keras-2.6.1/keras/man/layer_add.Rd | 42 - keras-2.6.1/keras/man/layer_alpha_dropout.Rd | 5 keras-2.6.1/keras/man/layer_average.Rd | 34 - keras-2.6.1/keras/man/layer_average_pooling_1d.Rd | 5 keras-2.6.1/keras/man/layer_average_pooling_2d.Rd | 5 keras-2.6.1/keras/man/layer_average_pooling_3d.Rd | 5 keras-2.6.1/keras/man/layer_batch_normalization.Rd | 5 keras-2.6.1/keras/man/layer_category_encoding.Rd |only keras-2.6.1/keras/man/layer_center_crop.Rd |only keras-2.6.1/keras/man/layer_concatenate.Rd | 35 - keras-2.6.1/keras/man/layer_conv_1d.Rd | 5 keras-2.6.1/keras/man/layer_conv_1d_transpose.Rd | 5 keras-2.6.1/keras/man/layer_conv_2d.Rd | 5 keras-2.6.1/keras/man/layer_conv_2d_transpose.Rd | 5 keras-2.6.1/keras/man/layer_conv_3d.Rd | 5 keras-2.6.1/keras/man/layer_conv_3d_transpose.Rd | 5 keras-2.6.1/keras/man/layer_conv_lstm_2d.Rd | 5 keras-2.6.1/keras/man/layer_cropping_1d.Rd | 5 keras-2.6.1/keras/man/layer_cropping_2d.Rd | 5 keras-2.6.1/keras/man/layer_cropping_3d.Rd | 5 keras-2.6.1/keras/man/layer_cudnn_gru.Rd | 5 keras-2.6.1/keras/man/layer_cudnn_lstm.Rd | 5 keras-2.6.1/keras/man/layer_dense.Rd | 5 keras-2.6.1/keras/man/layer_dense_features.Rd | 5 keras-2.6.1/keras/man/layer_depthwise_conv_2d.Rd | 5 keras-2.6.1/keras/man/layer_discretization.Rd |only keras-2.6.1/keras/man/layer_dot.Rd | 44 - keras-2.6.1/keras/man/layer_dropout.Rd | 5 keras-2.6.1/keras/man/layer_embedding.Rd | 5 keras-2.6.1/keras/man/layer_flatten.Rd | 5 keras-2.6.1/keras/man/layer_gaussian_dropout.Rd | 5 keras-2.6.1/keras/man/layer_gaussian_noise.Rd | 5 keras-2.6.1/keras/man/layer_global_average_pooling_1d.Rd | 5 keras-2.6.1/keras/man/layer_global_average_pooling_2d.Rd | 5 keras-2.6.1/keras/man/layer_global_average_pooling_3d.Rd | 5 keras-2.6.1/keras/man/layer_global_max_pooling_1d.Rd | 5 keras-2.6.1/keras/man/layer_global_max_pooling_2d.Rd | 5 keras-2.6.1/keras/man/layer_global_max_pooling_3d.Rd | 5 keras-2.6.1/keras/man/layer_gru.Rd | 5 keras-2.6.1/keras/man/layer_hashing.Rd |only keras-2.6.1/keras/man/layer_integer_lookup.Rd |only keras-2.6.1/keras/man/layer_lambda.Rd | 5 keras-2.6.1/keras/man/layer_layer_normalization.Rd | 5 keras-2.6.1/keras/man/layer_locally_connected_1d.Rd | 5 keras-2.6.1/keras/man/layer_locally_connected_2d.Rd | 5 keras-2.6.1/keras/man/layer_lstm.Rd | 5 keras-2.6.1/keras/man/layer_masking.Rd | 5 keras-2.6.1/keras/man/layer_max_pooling_1d.Rd | 5 keras-2.6.1/keras/man/layer_max_pooling_2d.Rd | 5 keras-2.6.1/keras/man/layer_max_pooling_3d.Rd | 5 keras-2.6.1/keras/man/layer_maximum.Rd | 34 - keras-2.6.1/keras/man/layer_minimum.Rd | 34 - keras-2.6.1/keras/man/layer_multiply.Rd | 34 - keras-2.6.1/keras/man/layer_normalization.Rd |only keras-2.6.1/keras/man/layer_permute.Rd | 5 keras-2.6.1/keras/man/layer_random_contrast.Rd |only keras-2.6.1/keras/man/layer_random_crop.Rd |only keras-2.6.1/keras/man/layer_random_flip.Rd |only keras-2.6.1/keras/man/layer_random_height.Rd |only keras-2.6.1/keras/man/layer_random_rotation.Rd |only keras-2.6.1/keras/man/layer_random_translation.Rd |only keras-2.6.1/keras/man/layer_random_width.Rd |only keras-2.6.1/keras/man/layer_random_zoom.Rd |only keras-2.6.1/keras/man/layer_repeat_vector.Rd | 5 keras-2.6.1/keras/man/layer_rescaling.Rd |only keras-2.6.1/keras/man/layer_reshape.Rd | 5 keras-2.6.1/keras/man/layer_resizing.Rd |only keras-2.6.1/keras/man/layer_separable_conv_1d.Rd | 5 keras-2.6.1/keras/man/layer_separable_conv_2d.Rd | 5 keras-2.6.1/keras/man/layer_simple_rnn.Rd | 5 keras-2.6.1/keras/man/layer_spatial_dropout_1d.Rd | 5 keras-2.6.1/keras/man/layer_spatial_dropout_2d.Rd | 5 keras-2.6.1/keras/man/layer_spatial_dropout_3d.Rd | 5 keras-2.6.1/keras/man/layer_string_lookup.Rd |only keras-2.6.1/keras/man/layer_subtract.Rd | 34 - keras-2.6.1/keras/man/layer_text_vectorization.Rd | 187 +++++- keras-2.6.1/keras/man/layer_upsampling_1d.Rd | 5 keras-2.6.1/keras/man/layer_upsampling_2d.Rd | 5 keras-2.6.1/keras/man/layer_upsampling_3d.Rd | 5 keras-2.6.1/keras/man/layer_zero_padding_1d.Rd | 5 keras-2.6.1/keras/man/layer_zero_padding_2d.Rd | 5 keras-2.6.1/keras/man/layer_zero_padding_3d.Rd | 5 keras-2.6.1/keras/man/metric_mean_wrapper.Rd | 2 keras-2.6.1/keras/man/metric_sparse_categorical_accuracy.Rd | 2 keras-2.6.1/keras/man/multi_gpu_model.Rd | 2 keras-2.6.1/keras/man/predict_proba.Rd | 4 keras-2.6.1/keras/man/reexports.Rd | 3 keras-2.6.1/keras/man/text_hashing_trick.Rd | 6 keras-2.6.1/keras/man/time_distributed.Rd | 5 keras-2.6.1/keras/tests/testthat/helper-utils.R | 17 keras-2.6.1/keras/tests/testthat/test-custom-layers.R | 4 keras-2.6.1/keras/tests/testthat/test-layer-text_vectorization.R | 13 keras-2.6.1/keras/tests/testthat/test-layers-preprocessing.R |only keras-2.6.1/keras/tests/testthat/test-layers.R | 22 keras-2.6.1/keras/tests/testthat/test-losses.R | 28 + keras-2.6.1/keras/tests/testthat/test-model.R | 7 keras-2.6.1/keras/tests/testthat/test-py-class.R |only keras-2.6.1/keras/tools/check1 |only keras-2.6.1/keras/tools/docs.R |only keras-2.6.1/keras/tools/experimental-utils.R | 34 + keras-2.6.1/keras/tools/find-missing-layers.R |only keras-2.6.1/keras/tools/make-wrapper2.R |only keras-2.6.1/keras/tools/test | 3 keras-2.6.1/keras/vignettes/faq.Rmd | 4 152 files changed, 1329 insertions(+), 727 deletions(-)
Title: Bayesian Set of Best Dynamic Treatment Regimes and Sample Size
in SMARTs for Binary Outcomes
Description: Permits determination of a set of
optimal dynamic treatment regimes and sample size for a SMART design
in the Bayesian setting with binary outcomes. Please see Artman (2020) <arXiv:2008.02341>.
Author: William Artman [aut, cre]
Maintainer: William Artman <William_Artman@URMC.Rochester.edu>
Diff between SMARTbayesR versions 1.0.2 dated 2021-04-03 and 2.0.0 dated 2021-09-30
SMARTbayesR-1.0.2/SMARTbayesR/inst/doc/SMARTBayesR.R |only SMARTbayesR-1.0.2/SMARTbayesR/inst/doc/SMARTBayesR.Rmd |only SMARTbayesR-1.0.2/SMARTbayesR/inst/doc/SMARTBayesR.html |only SMARTbayesR-1.0.2/SMARTbayesR/vignettes/SMARTBayesR.Rmd |only SMARTbayesR-2.0.0/SMARTbayesR/DESCRIPTION | 16 SMARTbayesR-2.0.0/SMARTbayesR/MD5 | 48 SMARTbayesR-2.0.0/SMARTbayesR/NAMESPACE | 2 SMARTbayesR-2.0.0/SMARTbayesR/R/LogOR.R | 64 - SMARTbayesR-2.0.0/SMARTbayesR/R/LogRR.R |only SMARTbayesR-2.0.0/SMARTbayesR/R/MCBUpperLimits.R | 49 SMARTbayesR-2.0.0/SMARTbayesR/R/PosteriorEDTRProbs.R | 46 SMARTbayesR-2.0.0/SMARTbayesR/R/PosteriorTrtSeqProb.R | 28 SMARTbayesR-2.0.0/SMARTbayesR/R/PowerBayesian.R | 88 + SMARTbayesR-2.0.0/SMARTbayesR/R/RD.R |only SMARTbayesR-2.0.0/SMARTbayesR/R/SMARTbayesR.R | 22 SMARTbayesR-2.0.0/SMARTbayesR/R/SimDesign1.R | 17 SMARTbayesR-2.0.0/SMARTbayesR/R/internal.R | 924 +++++++++++++-- SMARTbayesR-2.0.0/SMARTbayesR/build/vignette.rds |binary SMARTbayesR-2.0.0/SMARTbayesR/inst/doc/SMARTbayesR.R |only SMARTbayesR-2.0.0/SMARTbayesR/inst/doc/SMARTbayesR.Rmd |only SMARTbayesR-2.0.0/SMARTbayesR/inst/doc/SMARTbayesR.html |only SMARTbayesR-2.0.0/SMARTbayesR/man/LogOR.Rd | 14 SMARTbayesR-2.0.0/SMARTbayesR/man/LogRR.Rd |only SMARTbayesR-2.0.0/SMARTbayesR/man/MCBUpperLimits.Rd | 18 SMARTbayesR-2.0.0/SMARTbayesR/man/PosteriorEDTRProbs.Rd | 33 SMARTbayesR-2.0.0/SMARTbayesR/man/PosteriorTrtSeqProb.Rd | 10 SMARTbayesR-2.0.0/SMARTbayesR/man/PowerBayesian.Rd | 33 SMARTbayesR-2.0.0/SMARTbayesR/man/RD.Rd |only SMARTbayesR-2.0.0/SMARTbayesR/man/SMARTbayesR.Rd | 23 SMARTbayesR-2.0.0/SMARTbayesR/man/SimDesign1.Rd | 1 SMARTbayesR-2.0.0/SMARTbayesR/vignettes/SMARTbayesR.Rmd |only 31 files changed, 1156 insertions(+), 280 deletions(-)
Title: Sparse Family and Selection Index
Description: Here we provide tools for the estimation of coefficients in
penalized regressions when the (co)variance matrix of predictors
and the covariance vector between predictors and response, are
provided. These methods are extended to the context of a Selection Index
(commonly used for breeding value prediction). The approaches offer
opportunities such as the integration of high-throughput traits in genetic
evaluations ('Lopez-Cruz et al., 2020') <doi:10.1038/s41598-020-65011-2>
and solutions for training set optimization in Genomic Prediction
('Lopez-Cruz & de los Campos, 2021') <doi:10.1093/genetics/iyab030>.
Author: Marco Lopez-Cruz [aut, cre],
Gustavo de los Campos [aut],
Paulino Perez-Rodriguez [ctb]
Maintainer: Marco Lopez-Cruz <maraloc@gmail.com>
Diff between SFSI versions 0.4.0 dated 2021-05-15 and 1.0.0 dated 2021-09-30
DESCRIPTION | 10 MD5 | 78 +-- NEWS.md | 16 R/SSI.R | 38 - R/SSI_CV.R | 8 R/fitBLUP.R | 45 - R/lars.R | 54 +- R/methods.R | 32 - R/rrr_functions.R | 60 +- R/solveEN.R | 63 +- build/vignette.rds |binary data/datalist | 2 data/wheatHTP.RData |binary demo/SSI.R | 10 demo/SSI_CV.R | 10 demo/fitBLUP.R | 13 demo/lars2.R | 6 demo/solveEN.R | 6 inst/doc/PSI-documentation.R | 50 +- inst/doc/PSI-documentation.Rmd | 32 - inst/doc/PSI-documentation.html | 975 +++++++++++++++++++++------------------- inst/doc/SSI-documentation.R | 18 inst/doc/SSI-documentation.html | 605 ++++++++++++------------ man/BinaryFiles.Rd | 5 man/Methods_LASSO.Rd | 6 man/Methods_SSI.Rd | 15 man/Methods_SSI_CV.Rd | 12 man/SSI.Rd | 38 - man/collect.Rd | 17 man/covariance_matrix.Rd | 9 man/fitBLUP.Rd | 30 - man/getGenCov.Rd | 13 man/lars2.Rd | 36 - man/plotNet.Rd | 30 - man/plotPath.Rd | 21 man/solveEN.Rd | 46 + man/wheat.Rd | 57 +- src/c_utils.c | 48 + src/init.c | 8 vignettes/PSI-documentation.Rmd | 32 - 40 files changed, 1366 insertions(+), 1188 deletions(-)
Title: Statistical Methods for Composite Material Data
Description: An implementation of the statistical methods commonly
used for advanced composite materials in aerospace applications.
This package focuses on calculating basis values (lower tolerance
bounds) for material strength properties, as well as performing the
associated diagnostic tests. This package provides functions for
calculating basis values assuming several different distributions,
as well as providing functions for non-parametric methods of computing
basis values. Functions are also provided for testing the hypothesis
that there is no difference between strength and modulus data from an
alternate sample and that from a "qualification" or "baseline" sample.
For a discussion of these statistical methods and their use, see the
Composite Materials Handbook, Volume 1 (2012, ISBN: 978-0-7680-7811-4).
Additional details about this package are available in the paper by
Kloppenborg (2020, <doi:10.21105/joss.02265>).
Author: Stefan Kloppenborg [aut, cre],
Billy Cheng [ctb],
Ally Fraser [ctb],
Comtek Advanced Structures, Ltd. [fnd]
Maintainer: Stefan Kloppenborg <stefan@kloppenborg.ca>
Diff between cmstatr versions 0.9.0 dated 2021-07-01 and 0.9.1 dated 2021-09-30
cmstatr-0.9.0/cmstatr/tests/testthat/_snaps/basis.md |only cmstatr-0.9.0/cmstatr/tests/testthat/_snaps/checks.md |only cmstatr-0.9.0/cmstatr/tests/testthat/_snaps/equiv.md |only cmstatr-0.9.0/cmstatr/tests/testthat/_snaps/workflow.md |only cmstatr-0.9.1/cmstatr/DESCRIPTION | 10 cmstatr-0.9.1/cmstatr/MD5 | 34 - cmstatr-0.9.1/cmstatr/NEWS.md | 4 cmstatr-0.9.1/cmstatr/README.md | 2 cmstatr-0.9.1/cmstatr/build/vignette.rds |binary cmstatr-0.9.1/cmstatr/inst/doc/cmstatr_Graphing.html | 20 - cmstatr-0.9.1/cmstatr/inst/doc/cmstatr_Tutorial.html | 6 cmstatr-0.9.1/cmstatr/inst/doc/cmstatr_Validation.html | 54 +- cmstatr-0.9.1/cmstatr/inst/doc/hk_ext.R | 32 - cmstatr-0.9.1/cmstatr/inst/doc/hk_ext.Rmd | 39 +- cmstatr-0.9.1/cmstatr/inst/doc/hk_ext.html | 41 +- cmstatr-0.9.1/cmstatr/tests/testthat/test-basis.R | 291 ++++++++++++---- cmstatr-0.9.1/cmstatr/tests/testthat/test-checks.R | 18 cmstatr-0.9.1/cmstatr/tests/testthat/test-equiv.R | 103 +++-- cmstatr-0.9.1/cmstatr/tests/testthat/test-workflow.R | 181 ++++++--- cmstatr-0.9.1/cmstatr/vignettes/hk_ext.Rmd | 39 +- 20 files changed, 583 insertions(+), 291 deletions(-)
Title: Core Utilities for Developing and Running Spatially Explicit
Discrete Event Models
Description: Provides the core framework for a discrete event system (DES) to
implement a complete data-to-decisions, reproducible workflow.
The core DES components facilitate modularity, and easily enable the user
to include additional functionality by running user-built modules.
Includes conditional scheduling, restart after interruption, packaging of
reusable modules, tools for developing arbitrary automated workflows,
automated interweaving of modules of different temporal resolution,
and tools for visualizing and understanding the DES project.
Author: Alex M Chubaty [aut, cre] (<https://orcid.org/0000-0001-7146-8135>),
Eliot J B McIntire [aut] (<https://orcid.org/0000-0002-6914-8316>),
Yong Luo [ctb],
Steve Cumming [ctb],
Ceres Barros [ctb] (<https://orcid.org/0000-0003-4036-977X>),
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Alex M Chubaty <alex.chubaty@gmail.com>
Diff between SpaDES.core versions 1.0.8 dated 2021-06-10 and 1.0.9 dated 2021-09-30
DESCRIPTION | 25 MD5 | 120 +- NAMESPACE | 9 NEWS.md | 27 R/Plots.R | 99 + R/cache.R | 5 R/check.R | 31 R/checkpoint.R | 8 R/helpers.R | 1 R/misc-methods.R | 27 R/module-define.R | 58 - R/module-template.R | 2 R/moduleCoverage.R | 195 +-- R/moduleMetadata.R | 11 R/progress.R | 22 R/restart.R | 20 R/saveLoadSimList.R | 4 R/simList-accessors.R | 158 ++- R/simList-class.R | 2 R/simulation-parseModule.R | 20 R/simulation-simInit.R | 107 +- R/simulation-spades.R | 103 - R/spades-core-package.R | 4 build/vignette.rds |binary inst/doc/i-introduction.html | 4 inst/doc/ii-modules.R | 31 inst/doc/ii-modules.Rmd | 26 inst/doc/ii-modules.html | 877 +++++------------ inst/doc/iii-cache.html | 329 +++--- inst/doc/iv-advanced.html | 2 inst/doc/v-automated-testing.html | 2 inst/examples/example_outputs.R | 8 inst/sampleModules/caribouMovement/caribouMovement.R | 2 inst/sampleModules/fireSpread/fireSpread.R | 4 inst/sampleModules/randomLandscapes/randomLandscapes.R | 2 man/Plot.Rd | 17 man/Plots.Rd | 41 man/SpaDES.core-package.Rd | 4 man/checkpoint.Rd | 2 man/createsOutput.Rd | 5 man/defineParameter.Rd | 31 man/expectsInput.Rd | 5 man/globals.Rd | 2 man/moduleCodeFiles.Rd |only man/moduleCoverage.Rd | 33 man/params.Rd | 13 man/progress.Rd | 6 man/simInit.Rd | 5 man/simInitAnd.Rd | 12 man/simList-accessors-outputs.Rd | 8 man/simList-accessors-paths.Rd | 2 man/updateList.Rd | 12 tests/testthat/test-Plots.R |only tests/testthat/test-cache.R | 12 tests/testthat/test-checkpoint.R | 4 tests/testthat/test-mod.R | 76 + tests/testthat/test-module-deps-methods.R | 39 tests/testthat/test-module-template.R | 1 tests/testthat/test-save.R | 3 tests/testthat/test-simulation.R | 201 --- vignettes/bibliography.bib | 2 vignettes/ii-modules.Rmd | 26 62 files changed, 1392 insertions(+), 1515 deletions(-)
Title: Interface to the JavaScript Library 'amCharts 4'
Description: Creates JavaScript charts. The charts can be included in 'Shiny' apps and R markdown documents, or viewed from the R console and 'RStudio' viewer. Based on the JavaScript library 'amCharts 4' and the R packages 'htmlwidgets' and 'reactR'. Currently available types of chart are: vertical and horizontal bar chart, radial bar chart, stacked bar chart, vertical and horizontal Dumbbell chart, line chart, scatter chart, range area chart, gauge chart, boxplot chart, pie chart, and 100% stacked bar chart.
Author: Stéphane Laurent [aut, cre],
Antanas Marcelionis [ctb, cph] ('amCharts' library
(https://www.amcharts.com/)),
Terence Eden [ctb, cph] ('SuperTinyIcons' library
(https://github.com/edent/SuperTinyIcons/)),
Tom Alexander [ctb, cph] ('regression-js' library
(https://github.com/Tom-Alexander/regression-js))
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between rAmCharts4 versions 1.4.0 dated 2021-09-11 and 1.4.1 dated 2021-09-30
DESCRIPTION | 6 MD5 | 15 NAMESPACE | 1 NEWS.md | 9 R/shiny.R | 775 ++++++++------- inst/htmlwidgets/amChart4.js | 1854 ++++++++++++++------------------------ inst/htmlwidgets/amChart4.js.map | 2 man/rAmCharts4-shiny.Rd | 3 man/updateAmPercentageBarChart.Rd |only 9 files changed, 1169 insertions(+), 1496 deletions(-)
Title: Hierarchical Clustering with Spatial Constraints
Description: Implements a Ward-like hierarchical clustering
algorithm including soft spatial/geographical constraints.
Author: Marie Chavent [aut, cre],
Vanessa Kuentz [aut],
Amaury Labenne [aut],
Jerome Saracco [aut]
Maintainer: Marie Chavent <Marie.Chavent@u-bordeaux.fr>
Diff between ClustGeo versions 2.0 dated 2017-07-14 and 2.1 dated 2021-09-30
ClustGeo-2.0/ClustGeo/inst/commandes_CMD.R |only ClustGeo-2.0/ClustGeo/inst/tests.R |only ClustGeo-2.1/ClustGeo/DESCRIPTION | 18 ClustGeo-2.1/ClustGeo/MD5 | 50 - ClustGeo-2.1/ClustGeo/NAMESPACE | 12 ClustGeo-2.1/ClustGeo/R/choicealpha.R | 72 +- ClustGeo-2.1/ClustGeo/R/hclustgeo.R | 97 ++- ClustGeo-2.1/ClustGeo/R/inert.R | 4 ClustGeo-2.1/ClustGeo/R/inertdiss.R | 8 ClustGeo-2.1/ClustGeo/R/plot.choicealpha.R | 57 +- ClustGeo-2.1/ClustGeo/R/wardinit.R | 17 ClustGeo-2.1/ClustGeo/R/withindiss.R | 7 ClustGeo-2.1/ClustGeo/README.md | 13 ClustGeo-2.1/ClustGeo/build/vignette.rds |binary ClustGeo-2.1/ClustGeo/data/estuary.RData |binary ClustGeo-2.1/ClustGeo/inst/doc/intro_ClustGeo.R | 221 ++------ ClustGeo-2.1/ClustGeo/inst/doc/intro_ClustGeo.Rmd | 321 +++++------- ClustGeo-2.1/ClustGeo/inst/doc/intro_ClustGeo.html | 526 +++++++++++---------- ClustGeo-2.1/ClustGeo/man/choicealpha.Rd | 50 + ClustGeo-2.1/ClustGeo/man/estuary.Rd | 17 ClustGeo-2.1/ClustGeo/man/hclustgeo.Rd | 71 +- ClustGeo-2.1/ClustGeo/man/inert.Rd | 12 ClustGeo-2.1/ClustGeo/man/inertdiss.Rd | 7 ClustGeo-2.1/ClustGeo/man/plot.choicealpha.Rd | 45 + ClustGeo-2.1/ClustGeo/man/wardinit.Rd | 6 ClustGeo-2.1/ClustGeo/man/withindiss.Rd | 6 ClustGeo-2.1/ClustGeo/vignettes/intro_ClustGeo.Rmd | 321 +++++------- 27 files changed, 931 insertions(+), 1027 deletions(-)
Title: Another Plot Package: 'Bagplots', 'Iconplots', 'Summaryplots',
Slider Functions and Others
Description: Some functions for drawing some special plots:
The function 'bagplot' plots a bagplot,
'faces' plots chernoff faces,
'iconplot' plots a representation of a frequency table or a data matrix,
'plothulls' plots hulls of a bivariate data set,
'plotsummary' plots a graphical summary of a data set,
'puticon' adds icons to a plot,
'skyline.hist' combines several histograms of a one dimensional data set in one plot,
'slider' functions supports some interactive graphics,
'spin3R' helps an inspection of a 3-dim point cloud,
'stem.leaf' plots a stem and leaf plot,
'stem.leaf.backback' plots back-to-back versions of stem and leaf plot.
Author: Hans Peter Wolf [aut, cre]
Maintainer: Hans Peter Wolf <pwolf@wiwi.uni-bielefeld.de>
Diff between aplpack versions 1.3.3 dated 2019-07-29 and 1.3.5 dated 2021-09-30
DESCRIPTION | 10 MD5 | 22 - R/iconplot.R | 386 ++++++++++++++++------------ R/puticon.R | 639 ++++++++++++++++++++++++----------------------- build/vignette.rds |binary inst/doc/ms.pdf |binary inst/doc/slider-make.pdf |binary inst/doc/sliderfns.pdf |binary inst/src/faces.rev | 3 man/faces.Rd | 2 man/iconplot.Rd | 28 +- man/puticon.Rd | 29 +- 12 files changed, 616 insertions(+), 503 deletions(-)
Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in
tabular data such as primary and secondary cell suppression as described for example
in Hundepol et al. (2012) <doi:10.1002/9781118348239> are covered in this package.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl <bernhard.meindl@gmail.com>
Diff between sdcTable versions 0.32.0 dated 2021-08-06 and 0.32.1 dated 2021-09-30
DESCRIPTION | 8 MD5 | 56 ++-- R/RcppExports.R | 4 R/attack.R | 2 R/createJJFormat.R | 25 -- R/generics_multiple.r | 53 +--- R/generics_sdcProblem.r | 3 R/helper_functions.r | 14 - R/methods_class_sdcProblem.r | 400 +++++++++++++--------------------- R/methods_multiple_classes.r | 113 +-------- R/protectLinkedTables.R | 1 R/protectTable.R | 39 +-- R/protect_linked_tables.R | 17 - R/utils.R | 116 +++++++-- R/utils_simpleheuristic.R |only build/vignette.rds |binary inst/doc/sdcTable.R | 43 +-- inst/doc/sdcTable.html | 46 ++- inst/doc/sdcTable.rmd | 49 ++-- man/calc.multiple-method.Rd | 35 +- man/protectTable.Rd | 32 +- man/protect_linked_tables.Rd | 7 src/RcppExports.cpp | 15 + src/init.c | 2 src/suppConstraints.cpp | 2 src/suppMultDimTable.cpp |only tests/testthat/test-simpleheuristic.R | 2 vignettes/sdcTable.rmd | 49 ++-- vignettes/sdcTable_cache |only 29 files changed, 530 insertions(+), 603 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of
use. Integer, floating point and complex numbers are supported, as
well as a subset of trigonometric and statistics functions. Various
matrix decompositions are provided through optional integration with
LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the
header files from the templated 'Armadillo' library. Thus users do
not need to install 'Armadillo' itself in order to use
'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed
under Apache License 2; previous releases were under licensed as MPL
2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed
under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.
Armadillo requires a C++11 compiler.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates, Binxiang Ni, and Conrad Sanderson
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.10.6.0.0 dated 2021-07-16 and 0.10.7.0.0 dated 2021-09-30
ChangeLog | 68 DESCRIPTION | 10 MD5 | 1224 +++++----- README.md | 5 build/partial.rdb |binary build/vignette.rds |binary configure | 18 configure.ac | 2 inst/NEWS.Rd | 26 inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-sparseMatrix.pdf |binary inst/include/RcppArmadillo.h | 7 inst/include/RcppArmadilloAs.h | 284 +- inst/include/RcppArmadilloConfig.h | 17 inst/include/RcppArmadilloConfigGenerated.h.in | 5 inst/include/RcppArmadilloForward.h | 42 inst/include/RcppArmadilloSugar.h | 7 inst/include/RcppArmadilloWrap.h | 101 inst/include/armadillo | 2 inst/include/armadillo_bits/BaseCube_bones.hpp | 6 inst/include/armadillo_bits/BaseCube_meat.hpp | 6 inst/include/armadillo_bits/Base_bones.hpp | 20 inst/include/armadillo_bits/Base_meat.hpp | 12 inst/include/armadillo_bits/Col_bones.hpp | 16 inst/include/armadillo_bits/Col_meat.hpp | 9 inst/include/armadillo_bits/CubeToMatOp_bones.hpp | 2 inst/include/armadillo_bits/CubeToMatOp_meat.hpp | 2 inst/include/armadillo_bits/Cube_bones.hpp | 2 inst/include/armadillo_bits/Cube_meat.hpp | 24 inst/include/armadillo_bits/GenCube_bones.hpp | 2 inst/include/armadillo_bits/GenCube_meat.hpp | 2 inst/include/armadillo_bits/GenSpecialiser.hpp | 2 inst/include/armadillo_bits/Gen_bones.hpp | 2 inst/include/armadillo_bits/Gen_meat.hpp | 2 inst/include/armadillo_bits/GlueCube_bones.hpp | 2 inst/include/armadillo_bits/GlueCube_meat.hpp | 2 inst/include/armadillo_bits/Glue_bones.hpp | 2 inst/include/armadillo_bits/Glue_meat.hpp | 2 inst/include/armadillo_bits/MapMat_bones.hpp | 2 inst/include/armadillo_bits/MapMat_meat.hpp | 2 inst/include/armadillo_bits/Mat_bones.hpp | 24 inst/include/armadillo_bits/Mat_meat.hpp | 47 inst/include/armadillo_bits/OpCube_bones.hpp | 2 inst/include/armadillo_bits/OpCube_meat.hpp | 2 inst/include/armadillo_bits/Op_bones.hpp | 2 inst/include/armadillo_bits/Op_meat.hpp | 2 inst/include/armadillo_bits/Proxy.hpp | 603 ++-- inst/include/armadillo_bits/ProxyCube.hpp | 53 inst/include/armadillo_bits/Row_bones.hpp | 16 inst/include/armadillo_bits/Row_meat.hpp | 9 inst/include/armadillo_bits/SizeCube_bones.hpp | 2 inst/include/armadillo_bits/SizeCube_meat.hpp | 2 inst/include/armadillo_bits/SizeMat_bones.hpp | 2 inst/include/armadillo_bits/SizeMat_meat.hpp | 2 inst/include/armadillo_bits/SpBase_bones.hpp | 12 inst/include/armadillo_bits/SpBase_meat.hpp | 7 inst/include/armadillo_bits/SpCol_bones.hpp | 8 inst/include/armadillo_bits/SpCol_meat.hpp | 5 inst/include/armadillo_bits/SpGlue_bones.hpp | 2 inst/include/armadillo_bits/SpGlue_meat.hpp | 2 inst/include/armadillo_bits/SpMat_bones.hpp | 2 inst/include/armadillo_bits/SpMat_iterators_meat.hpp | 2 inst/include/armadillo_bits/SpMat_meat.hpp | 2 inst/include/armadillo_bits/SpOp_bones.hpp | 2 inst/include/armadillo_bits/SpOp_meat.hpp | 2 inst/include/armadillo_bits/SpProxy.hpp | 50 inst/include/armadillo_bits/SpRow_bones.hpp | 8 inst/include/armadillo_bits/SpRow_meat.hpp | 5 inst/include/armadillo_bits/SpSubview_bones.hpp | 14 inst/include/armadillo_bits/SpSubview_col_list_bones.hpp | 2 inst/include/armadillo_bits/SpSubview_col_list_meat.hpp | 2 inst/include/armadillo_bits/SpSubview_iterators_meat.hpp | 2 inst/include/armadillo_bits/SpSubview_meat.hpp | 8 inst/include/armadillo_bits/SpToDOp_bones.hpp | 4 inst/include/armadillo_bits/SpToDOp_meat.hpp | 2 inst/include/armadillo_bits/SpValProxy_bones.hpp | 2 inst/include/armadillo_bits/SpValProxy_meat.hpp | 2 inst/include/armadillo_bits/access.hpp | 2 inst/include/armadillo_bits/arma_cmath.hpp | 2 inst/include/armadillo_bits/arma_config.hpp | 2 inst/include/armadillo_bits/arma_forward.hpp | 9 inst/include/armadillo_bits/arma_ostream_bones.hpp | 2 inst/include/armadillo_bits/arma_ostream_meat.hpp | 6 inst/include/armadillo_bits/arma_rel_comparators.hpp | 56 inst/include/armadillo_bits/arma_rng.hpp | 2 inst/include/armadillo_bits/arma_rng_cxx11.hpp | 2 inst/include/armadillo_bits/arma_rng_cxx98.hpp | 2 inst/include/armadillo_bits/arma_static_check.hpp | 2 inst/include/armadillo_bits/arma_str.hpp | 2 inst/include/armadillo_bits/arma_version.hpp | 6 inst/include/armadillo_bits/arrayops_bones.hpp | 2 inst/include/armadillo_bits/arrayops_meat.hpp | 2 inst/include/armadillo_bits/auxlib_bones.hpp | 2 inst/include/armadillo_bits/auxlib_meat.hpp | 2 inst/include/armadillo_bits/band_helper.hpp | 2 inst/include/armadillo_bits/compiler_check.hpp | 24 inst/include/armadillo_bits/compiler_setup.hpp | 7 inst/include/armadillo_bits/compiler_setup_post.hpp | 2 inst/include/armadillo_bits/cond_rel_bones.hpp | 2 inst/include/armadillo_bits/cond_rel_meat.hpp | 2 inst/include/armadillo_bits/config.hpp | 2 inst/include/armadillo_bits/constants.hpp | 2 inst/include/armadillo_bits/constants_old.hpp | 2 inst/include/armadillo_bits/csv_name.hpp | 2 inst/include/armadillo_bits/debug.hpp | 5 inst/include/armadillo_bits/def_arpack.hpp | 2 inst/include/armadillo_bits/def_atlas.hpp | 2 inst/include/armadillo_bits/def_blas.hpp | 2 inst/include/armadillo_bits/def_hdf5.hpp | 2 inst/include/armadillo_bits/def_lapack.hpp | 2 inst/include/armadillo_bits/def_superlu.hpp | 2 inst/include/armadillo_bits/diagmat_proxy.hpp | 14 inst/include/armadillo_bits/diagview_bones.hpp | 6 inst/include/armadillo_bits/diagview_meat.hpp | 32 inst/include/armadillo_bits/diskio_bones.hpp | 2 inst/include/armadillo_bits/diskio_meat.hpp | 14 inst/include/armadillo_bits/distr_param.hpp | 2 inst/include/armadillo_bits/eGlueCube_bones.hpp | 2 inst/include/armadillo_bits/eGlueCube_meat.hpp | 2 inst/include/armadillo_bits/eGlue_bones.hpp | 2 inst/include/armadillo_bits/eGlue_meat.hpp | 2 inst/include/armadillo_bits/eOpCube_bones.hpp | 2 inst/include/armadillo_bits/eOpCube_meat.hpp | 2 inst/include/armadillo_bits/eOp_bones.hpp | 2 inst/include/armadillo_bits/eOp_meat.hpp | 2 inst/include/armadillo_bits/eglue_core_bones.hpp | 2 inst/include/armadillo_bits/eglue_core_meat.hpp | 2 inst/include/armadillo_bits/eop_aux.hpp | 2 inst/include/armadillo_bits/eop_core_bones.hpp | 2 inst/include/armadillo_bits/eop_core_meat.hpp | 2 inst/include/armadillo_bits/fft_engine.hpp | 3 inst/include/armadillo_bits/field_bones.hpp | 2 inst/include/armadillo_bits/field_meat.hpp | 12 inst/include/armadillo_bits/fill.hpp | 2 inst/include/armadillo_bits/fn_accu.hpp | 4 inst/include/armadillo_bits/fn_all.hpp | 2 inst/include/armadillo_bits/fn_any.hpp | 2 inst/include/armadillo_bits/fn_approx_equal.hpp | 2 inst/include/armadillo_bits/fn_as_scalar.hpp | 2 inst/include/armadillo_bits/fn_chi2rnd.hpp | 2 inst/include/armadillo_bits/fn_chol.hpp | 2 inst/include/armadillo_bits/fn_clamp.hpp | 2 inst/include/armadillo_bits/fn_cond.hpp | 2 inst/include/armadillo_bits/fn_conv.hpp | 2 inst/include/armadillo_bits/fn_conv_to.hpp | 2 inst/include/armadillo_bits/fn_cor.hpp | 2 inst/include/armadillo_bits/fn_cov.hpp | 2 inst/include/armadillo_bits/fn_cross.hpp | 2 inst/include/armadillo_bits/fn_cumprod.hpp | 2 inst/include/armadillo_bits/fn_cumsum.hpp | 2 inst/include/armadillo_bits/fn_det.hpp | 2 inst/include/armadillo_bits/fn_diagmat.hpp | 4 inst/include/armadillo_bits/fn_diagvec.hpp | 2 inst/include/armadillo_bits/fn_diff.hpp | 2 inst/include/armadillo_bits/fn_dot.hpp | 2 inst/include/armadillo_bits/fn_eig_gen.hpp | 2 inst/include/armadillo_bits/fn_eig_pair.hpp | 2 inst/include/armadillo_bits/fn_eig_sym.hpp | 2 inst/include/armadillo_bits/fn_eigs_gen.hpp | 2 inst/include/armadillo_bits/fn_eigs_sym.hpp | 2 inst/include/armadillo_bits/fn_elem.hpp | 2 inst/include/armadillo_bits/fn_eps.hpp | 2 inst/include/armadillo_bits/fn_expmat.hpp | 2 inst/include/armadillo_bits/fn_eye.hpp | 2 inst/include/armadillo_bits/fn_fft.hpp | 2 inst/include/armadillo_bits/fn_fft2.hpp | 2 inst/include/armadillo_bits/fn_find.hpp | 2 inst/include/armadillo_bits/fn_find_unique.hpp | 2 inst/include/armadillo_bits/fn_flip.hpp | 2 inst/include/armadillo_bits/fn_hess.hpp | 2 inst/include/armadillo_bits/fn_hist.hpp | 2 inst/include/armadillo_bits/fn_histc.hpp | 2 inst/include/armadillo_bits/fn_index_max.hpp | 2 inst/include/armadillo_bits/fn_index_min.hpp | 2 inst/include/armadillo_bits/fn_inplace_strans.hpp | 2 inst/include/armadillo_bits/fn_inplace_trans.hpp | 2 inst/include/armadillo_bits/fn_interp1.hpp | 2 inst/include/armadillo_bits/fn_interp2.hpp | 2 inst/include/armadillo_bits/fn_intersect.hpp | 2 inst/include/armadillo_bits/fn_inv.hpp | 2 inst/include/armadillo_bits/fn_join.hpp | 2 inst/include/armadillo_bits/fn_kmeans.hpp | 2 inst/include/armadillo_bits/fn_kron.hpp | 2 inst/include/armadillo_bits/fn_log_det.hpp | 2 inst/include/armadillo_bits/fn_log_normpdf.hpp | 2 inst/include/armadillo_bits/fn_logmat.hpp | 2 inst/include/armadillo_bits/fn_lu.hpp | 2 inst/include/armadillo_bits/fn_max.hpp | 2 inst/include/armadillo_bits/fn_mean.hpp | 2 inst/include/armadillo_bits/fn_median.hpp | 2 inst/include/armadillo_bits/fn_min.hpp | 2 inst/include/armadillo_bits/fn_misc.hpp | 2 inst/include/armadillo_bits/fn_mvnrnd.hpp | 2 inst/include/armadillo_bits/fn_n_unique.hpp | 2 inst/include/armadillo_bits/fn_nonzeros.hpp | 2 inst/include/armadillo_bits/fn_norm.hpp | 2 inst/include/armadillo_bits/fn_normalise.hpp | 2 inst/include/armadillo_bits/fn_normcdf.hpp | 2 inst/include/armadillo_bits/fn_normpdf.hpp | 2 inst/include/armadillo_bits/fn_numel.hpp | 2 inst/include/armadillo_bits/fn_ones.hpp | 2 inst/include/armadillo_bits/fn_orth_null.hpp | 2 inst/include/armadillo_bits/fn_pinv.hpp | 2 inst/include/armadillo_bits/fn_polyfit.hpp | 2 inst/include/armadillo_bits/fn_polyval.hpp | 2 inst/include/armadillo_bits/fn_powmat.hpp | 2 inst/include/armadillo_bits/fn_princomp.hpp | 2 inst/include/armadillo_bits/fn_prod.hpp | 6 inst/include/armadillo_bits/fn_qr.hpp | 2 inst/include/armadillo_bits/fn_quantile.hpp | 2 inst/include/armadillo_bits/fn_qz.hpp | 2 inst/include/armadillo_bits/fn_randg.hpp | 2 inst/include/armadillo_bits/fn_randi.hpp | 2 inst/include/armadillo_bits/fn_randn.hpp | 2 inst/include/armadillo_bits/fn_randperm.hpp | 2 inst/include/armadillo_bits/fn_randu.hpp | 2 inst/include/armadillo_bits/fn_range.hpp | 2 inst/include/armadillo_bits/fn_rank.hpp | 2 inst/include/armadillo_bits/fn_regspace.hpp | 2 inst/include/armadillo_bits/fn_repelem.hpp | 2 inst/include/armadillo_bits/fn_repmat.hpp | 2 inst/include/armadillo_bits/fn_reshape.hpp | 2 inst/include/armadillo_bits/fn_resize.hpp | 2 inst/include/armadillo_bits/fn_reverse.hpp | 2 inst/include/armadillo_bits/fn_roots.hpp | 2 inst/include/armadillo_bits/fn_schur.hpp | 2 inst/include/armadillo_bits/fn_shift.hpp | 2 inst/include/armadillo_bits/fn_shuffle.hpp | 2 inst/include/armadillo_bits/fn_size.hpp | 2 inst/include/armadillo_bits/fn_solve.hpp | 2 inst/include/armadillo_bits/fn_sort.hpp | 2 inst/include/armadillo_bits/fn_sort_index.hpp | 2 inst/include/armadillo_bits/fn_speye.hpp | 2 inst/include/armadillo_bits/fn_spones.hpp | 2 inst/include/armadillo_bits/fn_sprandn.hpp | 2 inst/include/armadillo_bits/fn_sprandu.hpp | 2 inst/include/armadillo_bits/fn_spsolve.hpp | 4 inst/include/armadillo_bits/fn_sqrtmat.hpp | 2 inst/include/armadillo_bits/fn_stddev.hpp | 2 inst/include/armadillo_bits/fn_strans.hpp | 2 inst/include/armadillo_bits/fn_sum.hpp | 2 inst/include/armadillo_bits/fn_svd.hpp | 2 inst/include/armadillo_bits/fn_svds.hpp | 2 inst/include/armadillo_bits/fn_sylvester.hpp | 2 inst/include/armadillo_bits/fn_symmat.hpp | 2 inst/include/armadillo_bits/fn_toeplitz.hpp | 2 inst/include/armadillo_bits/fn_trace.hpp | 2 inst/include/armadillo_bits/fn_trans.hpp | 2 inst/include/armadillo_bits/fn_trapz.hpp | 2 inst/include/armadillo_bits/fn_trig.hpp | 2 inst/include/armadillo_bits/fn_trimat.hpp | 2 inst/include/armadillo_bits/fn_trimat_ind.hpp | 2 inst/include/armadillo_bits/fn_trunc_exp.hpp | 2 inst/include/armadillo_bits/fn_trunc_log.hpp | 2 inst/include/armadillo_bits/fn_unique.hpp | 2 inst/include/armadillo_bits/fn_var.hpp | 2 inst/include/armadillo_bits/fn_vectorise.hpp | 2 inst/include/armadillo_bits/fn_wishrnd.hpp | 2 inst/include/armadillo_bits/fn_zeros.hpp | 2 inst/include/armadillo_bits/glue_affmul_bones.hpp | 2 inst/include/armadillo_bits/glue_affmul_meat.hpp | 2 inst/include/armadillo_bits/glue_atan2_bones.hpp | 2 inst/include/armadillo_bits/glue_atan2_meat.hpp | 2 inst/include/armadillo_bits/glue_conv_bones.hpp | 2 inst/include/armadillo_bits/glue_conv_meat.hpp | 2 inst/include/armadillo_bits/glue_cor_bones.hpp | 2 inst/include/armadillo_bits/glue_cor_meat.hpp | 2 inst/include/armadillo_bits/glue_cov_bones.hpp | 2 inst/include/armadillo_bits/glue_cov_meat.hpp | 2 inst/include/armadillo_bits/glue_cross_bones.hpp | 2 inst/include/armadillo_bits/glue_cross_meat.hpp | 2 inst/include/armadillo_bits/glue_hist_bones.hpp | 2 inst/include/armadillo_bits/glue_hist_meat.hpp | 2 inst/include/armadillo_bits/glue_histc_bones.hpp | 2 inst/include/armadillo_bits/glue_histc_meat.hpp | 2 inst/include/armadillo_bits/glue_hypot_bones.hpp | 2 inst/include/armadillo_bits/glue_hypot_meat.hpp | 2 inst/include/armadillo_bits/glue_intersect_bones.hpp | 2 inst/include/armadillo_bits/glue_intersect_meat.hpp | 2 inst/include/armadillo_bits/glue_join_bones.hpp | 2 inst/include/armadillo_bits/glue_join_meat.hpp | 2 inst/include/armadillo_bits/glue_kron_bones.hpp | 2 inst/include/armadillo_bits/glue_kron_meat.hpp | 2 inst/include/armadillo_bits/glue_max_bones.hpp | 10 inst/include/armadillo_bits/glue_max_meat.hpp | 120 inst/include/armadillo_bits/glue_min_bones.hpp | 10 inst/include/armadillo_bits/glue_min_meat.hpp | 120 inst/include/armadillo_bits/glue_mixed_bones.hpp | 2 inst/include/armadillo_bits/glue_mixed_meat.hpp | 2 inst/include/armadillo_bits/glue_mvnrnd_bones.hpp | 2 inst/include/armadillo_bits/glue_mvnrnd_meat.hpp | 2 inst/include/armadillo_bits/glue_polyfit_bones.hpp | 2 inst/include/armadillo_bits/glue_polyfit_meat.hpp | 2 inst/include/armadillo_bits/glue_polyval_bones.hpp | 2 inst/include/armadillo_bits/glue_polyval_meat.hpp | 2 inst/include/armadillo_bits/glue_quantile_bones.hpp | 2 inst/include/armadillo_bits/glue_quantile_meat.hpp | 2 inst/include/armadillo_bits/glue_relational_bones.hpp | 2 inst/include/armadillo_bits/glue_relational_meat.hpp | 2 inst/include/armadillo_bits/glue_solve_bones.hpp | 5 inst/include/armadillo_bits/glue_solve_meat.hpp | 34 inst/include/armadillo_bits/glue_times_bones.hpp | 4 inst/include/armadillo_bits/glue_times_meat.hpp | 2 inst/include/armadillo_bits/glue_toeplitz_bones.hpp | 2 inst/include/armadillo_bits/glue_toeplitz_meat.hpp | 2 inst/include/armadillo_bits/glue_trapz_bones.hpp | 2 inst/include/armadillo_bits/glue_trapz_meat.hpp | 2 inst/include/armadillo_bits/gmm_diag_bones.hpp | 2 inst/include/armadillo_bits/gmm_diag_meat.hpp | 2 inst/include/armadillo_bits/gmm_full_bones.hpp | 2 inst/include/armadillo_bits/gmm_full_meat.hpp | 2 inst/include/armadillo_bits/gmm_misc_bones.hpp | 2 inst/include/armadillo_bits/gmm_misc_meat.hpp | 2 inst/include/armadillo_bits/hdf5_misc.hpp | 2 inst/include/armadillo_bits/hdf5_name.hpp | 2 inst/include/armadillo_bits/include_atlas.hpp | 2 inst/include/armadillo_bits/include_hdf5.hpp | 2 inst/include/armadillo_bits/include_superlu.hpp | 2 inst/include/armadillo_bits/injector_bones.hpp | 2 inst/include/armadillo_bits/injector_meat.hpp | 4 inst/include/armadillo_bits/memory.hpp | 2 inst/include/armadillo_bits/mp_misc.hpp | 2 inst/include/armadillo_bits/mtGlueCube_bones.hpp | 2 inst/include/armadillo_bits/mtGlueCube_meat.hpp | 2 inst/include/armadillo_bits/mtGlue_bones.hpp | 2 inst/include/armadillo_bits/mtGlue_meat.hpp | 2 inst/include/armadillo_bits/mtOpCube_bones.hpp | 2 inst/include/armadillo_bits/mtOpCube_meat.hpp | 2 inst/include/armadillo_bits/mtOp_bones.hpp | 2 inst/include/armadillo_bits/mtOp_meat.hpp | 2 inst/include/armadillo_bits/mtSpGlue_bones.hpp | 2 inst/include/armadillo_bits/mtSpGlue_meat.hpp | 2 inst/include/armadillo_bits/mtSpOp_bones.hpp | 2 inst/include/armadillo_bits/mtSpOp_meat.hpp | 2 inst/include/armadillo_bits/mul_gemm.hpp | 4 inst/include/armadillo_bits/mul_gemm_mixed.hpp | 4 inst/include/armadillo_bits/mul_gemv.hpp | 6 inst/include/armadillo_bits/mul_herk.hpp | 2 inst/include/armadillo_bits/mul_syrk.hpp | 2 inst/include/armadillo_bits/newarp_DenseGenMatProd_bones.hpp | 2 inst/include/armadillo_bits/newarp_DenseGenMatProd_meat.hpp | 2 inst/include/armadillo_bits/newarp_DoubleShiftQR_bones.hpp | 2 inst/include/armadillo_bits/newarp_DoubleShiftQR_meat.hpp | 2 inst/include/armadillo_bits/newarp_EigsSelect.hpp | 2 inst/include/armadillo_bits/newarp_GenEigsSolver_bones.hpp | 6 inst/include/armadillo_bits/newarp_GenEigsSolver_meat.hpp | 2 inst/include/armadillo_bits/newarp_SortEigenvalue.hpp | 2 inst/include/armadillo_bits/newarp_SparseGenMatProd_bones.hpp | 2 inst/include/armadillo_bits/newarp_SparseGenMatProd_meat.hpp | 2 inst/include/armadillo_bits/newarp_SparseGenRealShiftSolve_bones.hpp | 2 inst/include/armadillo_bits/newarp_SparseGenRealShiftSolve_meat.hpp | 2 inst/include/armadillo_bits/newarp_SymEigsShiftSolver_bones.hpp | 2 inst/include/armadillo_bits/newarp_SymEigsShiftSolver_meat.hpp | 2 inst/include/armadillo_bits/newarp_SymEigsSolver_bones.hpp | 6 inst/include/armadillo_bits/newarp_SymEigsSolver_meat.hpp | 2 inst/include/armadillo_bits/newarp_TridiagEigen_bones.hpp | 2 inst/include/armadillo_bits/newarp_TridiagEigen_meat.hpp | 2 inst/include/armadillo_bits/newarp_UpperHessenbergEigen_bones.hpp | 2 inst/include/armadillo_bits/newarp_UpperHessenbergEigen_meat.hpp | 2 inst/include/armadillo_bits/newarp_UpperHessenbergQR_bones.hpp | 2 inst/include/armadillo_bits/newarp_UpperHessenbergQR_meat.hpp | 2 inst/include/armadillo_bits/newarp_cx_attrib.hpp | 2 inst/include/armadillo_bits/op_all_bones.hpp | 2 inst/include/armadillo_bits/op_all_meat.hpp | 2 inst/include/armadillo_bits/op_any_bones.hpp | 2 inst/include/armadillo_bits/op_any_meat.hpp | 2 inst/include/armadillo_bits/op_chi2rnd_bones.hpp | 2 inst/include/armadillo_bits/op_chi2rnd_meat.hpp | 2 inst/include/armadillo_bits/op_chol_bones.hpp | 2 inst/include/armadillo_bits/op_chol_meat.hpp | 2 inst/include/armadillo_bits/op_clamp_bones.hpp | 2 inst/include/armadillo_bits/op_clamp_meat.hpp | 2 inst/include/armadillo_bits/op_cond_bones.hpp | 2 inst/include/armadillo_bits/op_cond_meat.hpp | 2 inst/include/armadillo_bits/op_cor_bones.hpp | 2 inst/include/armadillo_bits/op_cor_meat.hpp | 2 inst/include/armadillo_bits/op_cov_bones.hpp | 2 inst/include/armadillo_bits/op_cov_meat.hpp | 2 inst/include/armadillo_bits/op_cumprod_bones.hpp | 2 inst/include/armadillo_bits/op_cumprod_meat.hpp | 2 inst/include/armadillo_bits/op_cumsum_bones.hpp | 2 inst/include/armadillo_bits/op_cumsum_meat.hpp | 2 inst/include/armadillo_bits/op_cx_scalar_bones.hpp | 2 inst/include/armadillo_bits/op_cx_scalar_meat.hpp | 2 inst/include/armadillo_bits/op_det_bones.hpp | 2 inst/include/armadillo_bits/op_det_meat.hpp | 2 inst/include/armadillo_bits/op_diagmat_bones.hpp | 2 inst/include/armadillo_bits/op_diagmat_meat.hpp | 2 inst/include/armadillo_bits/op_diagvec_bones.hpp | 2 inst/include/armadillo_bits/op_diagvec_meat.hpp | 2 inst/include/armadillo_bits/op_diff_bones.hpp | 2 inst/include/armadillo_bits/op_diff_meat.hpp | 2 inst/include/armadillo_bits/op_dot_bones.hpp | 2 inst/include/armadillo_bits/op_dot_meat.hpp | 2 inst/include/armadillo_bits/op_dotext_bones.hpp | 2 inst/include/armadillo_bits/op_dotext_meat.hpp | 2 inst/include/armadillo_bits/op_expmat_bones.hpp | 2 inst/include/armadillo_bits/op_expmat_meat.hpp | 2 inst/include/armadillo_bits/op_fft_bones.hpp | 2 inst/include/armadillo_bits/op_fft_meat.hpp | 2 inst/include/armadillo_bits/op_find_bones.hpp | 2 inst/include/armadillo_bits/op_find_meat.hpp | 2 inst/include/armadillo_bits/op_find_unique_bones.hpp | 2 inst/include/armadillo_bits/op_find_unique_meat.hpp | 2 inst/include/armadillo_bits/op_flip_bones.hpp | 2 inst/include/armadillo_bits/op_flip_meat.hpp | 2 inst/include/armadillo_bits/op_hist_bones.hpp | 2 inst/include/armadillo_bits/op_hist_meat.hpp | 2 inst/include/armadillo_bits/op_htrans_bones.hpp | 18 inst/include/armadillo_bits/op_htrans_meat.hpp | 141 - inst/include/armadillo_bits/op_index_max_bones.hpp | 2 inst/include/armadillo_bits/op_index_max_meat.hpp | 2 inst/include/armadillo_bits/op_index_min_bones.hpp | 2 inst/include/armadillo_bits/op_index_min_meat.hpp | 2 inst/include/armadillo_bits/op_inv_bones.hpp | 2 inst/include/armadillo_bits/op_inv_meat.hpp | 2 inst/include/armadillo_bits/op_log_det_bones.hpp | 2 inst/include/armadillo_bits/op_log_det_meat.hpp | 2 inst/include/armadillo_bits/op_logmat_bones.hpp | 2 inst/include/armadillo_bits/op_logmat_meat.hpp | 2 inst/include/armadillo_bits/op_max_bones.hpp | 2 inst/include/armadillo_bits/op_max_meat.hpp | 2 inst/include/armadillo_bits/op_mean_bones.hpp | 2 inst/include/armadillo_bits/op_mean_meat.hpp | 2 inst/include/armadillo_bits/op_median_bones.hpp | 2 inst/include/armadillo_bits/op_median_meat.hpp | 6 inst/include/armadillo_bits/op_min_bones.hpp | 2 inst/include/armadillo_bits/op_min_meat.hpp | 2 inst/include/armadillo_bits/op_misc_bones.hpp | 2 inst/include/armadillo_bits/op_misc_meat.hpp | 2 inst/include/armadillo_bits/op_nonzeros_bones.hpp | 2 inst/include/armadillo_bits/op_nonzeros_meat.hpp | 2 inst/include/armadillo_bits/op_norm_bones.hpp | 2 inst/include/armadillo_bits/op_norm_meat.hpp | 2 inst/include/armadillo_bits/op_normalise_bones.hpp | 2 inst/include/armadillo_bits/op_normalise_meat.hpp | 2 inst/include/armadillo_bits/op_orth_null_bones.hpp | 2 inst/include/armadillo_bits/op_orth_null_meat.hpp | 2 inst/include/armadillo_bits/op_pinv_bones.hpp | 2 inst/include/armadillo_bits/op_pinv_meat.hpp | 2 inst/include/armadillo_bits/op_powmat_bones.hpp | 2 inst/include/armadillo_bits/op_powmat_meat.hpp | 2 inst/include/armadillo_bits/op_princomp_bones.hpp | 2 inst/include/armadillo_bits/op_princomp_meat.hpp | 2 inst/include/armadillo_bits/op_prod_bones.hpp | 2 inst/include/armadillo_bits/op_prod_meat.hpp | 6 inst/include/armadillo_bits/op_range_bones.hpp | 2 inst/include/armadillo_bits/op_range_meat.hpp | 2 inst/include/armadillo_bits/op_relational_bones.hpp | 2 inst/include/armadillo_bits/op_relational_meat.hpp | 2 inst/include/armadillo_bits/op_repelem_bones.hpp | 2 inst/include/armadillo_bits/op_repelem_meat.hpp | 2 inst/include/armadillo_bits/op_repmat_bones.hpp | 2 inst/include/armadillo_bits/op_repmat_meat.hpp | 2 inst/include/armadillo_bits/op_reshape_bones.hpp | 2 inst/include/armadillo_bits/op_reshape_meat.hpp | 42 inst/include/armadillo_bits/op_resize_bones.hpp | 2 inst/include/armadillo_bits/op_resize_meat.hpp | 2 inst/include/armadillo_bits/op_reverse_bones.hpp | 2 inst/include/armadillo_bits/op_reverse_meat.hpp | 2 inst/include/armadillo_bits/op_roots_bones.hpp | 2 inst/include/armadillo_bits/op_roots_meat.hpp | 2 inst/include/armadillo_bits/op_shift_bones.hpp | 2 inst/include/armadillo_bits/op_shift_meat.hpp | 2 inst/include/armadillo_bits/op_shuffle_bones.hpp | 2 inst/include/armadillo_bits/op_shuffle_meat.hpp | 10 inst/include/armadillo_bits/op_sort_bones.hpp | 2 inst/include/armadillo_bits/op_sort_index_bones.hpp | 2 inst/include/armadillo_bits/op_sort_index_meat.hpp | 2 inst/include/armadillo_bits/op_sort_meat.hpp | 2 inst/include/armadillo_bits/op_sp_minus_bones.hpp | 2 inst/include/armadillo_bits/op_sp_minus_meat.hpp | 2 inst/include/armadillo_bits/op_sp_plus_bones.hpp | 2 inst/include/armadillo_bits/op_sp_plus_meat.hpp | 2 inst/include/armadillo_bits/op_sqrtmat_bones.hpp | 2 inst/include/armadillo_bits/op_sqrtmat_meat.hpp | 2 inst/include/armadillo_bits/op_stddev_bones.hpp | 2 inst/include/armadillo_bits/op_stddev_meat.hpp | 2 inst/include/armadillo_bits/op_strans_bones.hpp | 10 inst/include/armadillo_bits/op_strans_meat.hpp | 180 - inst/include/armadillo_bits/op_sum_bones.hpp | 2 inst/include/armadillo_bits/op_sum_meat.hpp | 2 inst/include/armadillo_bits/op_symmat_bones.hpp | 2 inst/include/armadillo_bits/op_symmat_meat.hpp | 2 inst/include/armadillo_bits/op_toeplitz_bones.hpp | 2 inst/include/armadillo_bits/op_toeplitz_meat.hpp | 2 inst/include/armadillo_bits/op_trimat_bones.hpp | 11 inst/include/armadillo_bits/op_trimat_meat.hpp | 165 - inst/include/armadillo_bits/op_unique_bones.hpp | 2 inst/include/armadillo_bits/op_unique_meat.hpp | 2 inst/include/armadillo_bits/op_var_bones.hpp | 2 inst/include/armadillo_bits/op_var_meat.hpp | 2 inst/include/armadillo_bits/op_vectorise_bones.hpp | 6 inst/include/armadillo_bits/op_vectorise_meat.hpp | 154 - inst/include/armadillo_bits/op_wishrnd_bones.hpp | 2 inst/include/armadillo_bits/op_wishrnd_meat.hpp | 2 inst/include/armadillo_bits/operator_cube_div.hpp | 2 inst/include/armadillo_bits/operator_cube_minus.hpp | 2 inst/include/armadillo_bits/operator_cube_plus.hpp | 2 inst/include/armadillo_bits/operator_cube_relational.hpp | 2 inst/include/armadillo_bits/operator_cube_schur.hpp | 2 inst/include/armadillo_bits/operator_cube_times.hpp | 2 inst/include/armadillo_bits/operator_div.hpp | 2 inst/include/armadillo_bits/operator_minus.hpp | 2 inst/include/armadillo_bits/operator_ostream.hpp | 2 inst/include/armadillo_bits/operator_plus.hpp | 2 inst/include/armadillo_bits/operator_relational.hpp | 2 inst/include/armadillo_bits/operator_schur.hpp | 2 inst/include/armadillo_bits/operator_times.hpp | 2 inst/include/armadillo_bits/podarray_bones.hpp | 2 inst/include/armadillo_bits/podarray_meat.hpp | 2 inst/include/armadillo_bits/promote_type.hpp | 2 inst/include/armadillo_bits/restrictors.hpp | 2 inst/include/armadillo_bits/running_stat_bones.hpp | 2 inst/include/armadillo_bits/running_stat_meat.hpp | 2 inst/include/armadillo_bits/running_stat_vec_bones.hpp | 2 inst/include/armadillo_bits/running_stat_vec_meat.hpp | 2 inst/include/armadillo_bits/sp_auxlib_bones.hpp | 2 inst/include/armadillo_bits/sp_auxlib_meat.hpp | 2 inst/include/armadillo_bits/span.hpp | 2 inst/include/armadillo_bits/spdiagview_bones.hpp | 2 inst/include/armadillo_bits/spdiagview_meat.hpp | 2 inst/include/armadillo_bits/spglue_join_bones.hpp | 2 inst/include/armadillo_bits/spglue_join_meat.hpp | 2 inst/include/armadillo_bits/spglue_kron_bones.hpp | 2 inst/include/armadillo_bits/spglue_kron_meat.hpp | 2 inst/include/armadillo_bits/spglue_max_bones.hpp | 2 inst/include/armadillo_bits/spglue_max_meat.hpp | 2 inst/include/armadillo_bits/spglue_merge_bones.hpp | 2 inst/include/armadillo_bits/spglue_merge_meat.hpp | 2 inst/include/armadillo_bits/spglue_min_bones.hpp | 2 inst/include/armadillo_bits/spglue_min_meat.hpp | 2 inst/include/armadillo_bits/spglue_minus_bones.hpp | 2 inst/include/armadillo_bits/spglue_minus_meat.hpp | 2 inst/include/armadillo_bits/spglue_plus_bones.hpp | 2 inst/include/armadillo_bits/spglue_plus_meat.hpp | 2 inst/include/armadillo_bits/spglue_relational_bones.hpp | 2 inst/include/armadillo_bits/spglue_relational_meat.hpp | 2 inst/include/armadillo_bits/spglue_schur_bones.hpp | 2 inst/include/armadillo_bits/spglue_schur_meat.hpp | 2 inst/include/armadillo_bits/spglue_times_bones.hpp | 2 inst/include/armadillo_bits/spglue_times_meat.hpp | 2 inst/include/armadillo_bits/spop_diagmat_bones.hpp | 2 inst/include/armadillo_bits/spop_diagmat_meat.hpp | 2 inst/include/armadillo_bits/spop_htrans_bones.hpp | 2 inst/include/armadillo_bits/spop_htrans_meat.hpp | 2 inst/include/armadillo_bits/spop_max_bones.hpp | 2 inst/include/armadillo_bits/spop_max_meat.hpp | 2 inst/include/armadillo_bits/spop_mean_bones.hpp | 2 inst/include/armadillo_bits/spop_mean_meat.hpp | 2 inst/include/armadillo_bits/spop_min_bones.hpp | 2 inst/include/armadillo_bits/spop_min_meat.hpp | 2 inst/include/armadillo_bits/spop_misc_bones.hpp | 2 inst/include/armadillo_bits/spop_misc_meat.hpp | 2 inst/include/armadillo_bits/spop_norm_bones.hpp | 2 inst/include/armadillo_bits/spop_norm_meat.hpp | 2 inst/include/armadillo_bits/spop_normalise_bones.hpp | 2 inst/include/armadillo_bits/spop_normalise_meat.hpp | 2 inst/include/armadillo_bits/spop_repmat_bones.hpp | 2 inst/include/armadillo_bits/spop_repmat_meat.hpp | 2 inst/include/armadillo_bits/spop_reverse_bones.hpp | 2 inst/include/armadillo_bits/spop_reverse_meat.hpp | 2 inst/include/armadillo_bits/spop_strans_bones.hpp | 2 inst/include/armadillo_bits/spop_strans_meat.hpp | 2 inst/include/armadillo_bits/spop_sum_bones.hpp | 2 inst/include/armadillo_bits/spop_sum_meat.hpp | 2 inst/include/armadillo_bits/spop_symmat_bones.hpp | 2 inst/include/armadillo_bits/spop_symmat_meat.hpp | 2 inst/include/armadillo_bits/spop_trimat_bones.hpp | 2 inst/include/armadillo_bits/spop_trimat_meat.hpp | 2 inst/include/armadillo_bits/spop_var_bones.hpp | 2 inst/include/armadillo_bits/spop_var_meat.hpp | 2 inst/include/armadillo_bits/spop_vectorise_bones.hpp | 2 inst/include/armadillo_bits/spop_vectorise_meat.hpp | 2 inst/include/armadillo_bits/strip.hpp | 2 inst/include/armadillo_bits/subview_bones.hpp | 81 inst/include/armadillo_bits/subview_cube_bones.hpp | 4 inst/include/armadillo_bits/subview_cube_each_bones.hpp | 2 inst/include/armadillo_bits/subview_cube_each_meat.hpp | 2 inst/include/armadillo_bits/subview_cube_meat.hpp | 2 inst/include/armadillo_bits/subview_cube_slices_bones.hpp | 2 inst/include/armadillo_bits/subview_cube_slices_meat.hpp | 2 inst/include/armadillo_bits/subview_each_bones.hpp | 2 inst/include/armadillo_bits/subview_each_meat.hpp | 2 inst/include/armadillo_bits/subview_elem1_bones.hpp | 2 inst/include/armadillo_bits/subview_elem1_meat.hpp | 2 inst/include/armadillo_bits/subview_elem2_bones.hpp | 2 inst/include/armadillo_bits/subview_elem2_meat.hpp | 2 inst/include/armadillo_bits/subview_field_bones.hpp | 4 inst/include/armadillo_bits/subview_field_meat.hpp | 2 inst/include/armadillo_bits/subview_meat.hpp | 396 +++ inst/include/armadillo_bits/sympd_helper.hpp | 2 inst/include/armadillo_bits/traits.hpp | 16 inst/include/armadillo_bits/translate_arpack.hpp | 2 inst/include/armadillo_bits/translate_atlas.hpp | 2 inst/include/armadillo_bits/translate_blas.hpp | 2 inst/include/armadillo_bits/translate_lapack.hpp | 2 inst/include/armadillo_bits/translate_superlu.hpp | 2 inst/include/armadillo_bits/trimat_helper.hpp | 2 inst/include/armadillo_bits/typedef_elem.hpp | 2 inst/include/armadillo_bits/typedef_elem_check.hpp | 2 inst/include/armadillo_bits/typedef_mat.hpp | 2 inst/include/armadillo_bits/typedef_mat_fixed.hpp | 2 inst/include/armadillo_bits/unwrap.hpp | 231 + inst/include/armadillo_bits/unwrap_cube.hpp | 2 inst/include/armadillo_bits/unwrap_spmat.hpp | 2 inst/include/armadillo_bits/upgrade_val.hpp | 4 inst/include/armadillo_bits/wall_clock_bones.hpp | 2 inst/include/armadillo_bits/wall_clock_meat.hpp | 2 inst/include/armadillo_bits/xtrans_mat_bones.hpp | 2 inst/include/armadillo_bits/xtrans_mat_meat.hpp | 2 inst/include/armadillo_bits/xvec_htrans_bones.hpp | 2 inst/include/armadillo_bits/xvec_htrans_meat.hpp | 2 613 files changed, 3900 insertions(+), 1958 deletions(-)
Title: Machine Learning in 'shiny' with 'mlr3'
Description: A web-based graphical user interface to provide the basic steps of a machine learning workflow. It uses the functionalities of the 'mlr3' framework.
Author: Laurens Tetzlaff [aut, cre],
Gero Szepannek [aut]
Maintainer: Laurens Tetzlaff <laurens.tetzlaff@outlook.de>
Diff between mlr3shiny versions 0.1.1 dated 2020-03-31 and 0.2.0 dated 2021-09-30
mlr3shiny-0.1.1/mlr3shiny/tests/testthat/apps |only mlr3shiny-0.2.0/mlr3shiny/DESCRIPTION | 17 - mlr3shiny-0.2.0/mlr3shiny/MD5 | 57 +++-- mlr3shiny-0.2.0/mlr3shiny/NEWS.md | 4 mlr3shiny-0.2.0/mlr3shiny/README.md | 4 mlr3shiny-0.2.0/mlr3shiny/inst/mlr3shiny/global.R | 70 ++++++- mlr3shiny-0.2.0/mlr3shiny/inst/mlr3shiny/server.R | 1 mlr3shiny-0.2.0/mlr3shiny/inst/mlr3shiny/server/server_Data.R | 8 mlr3shiny-0.2.0/mlr3shiny/inst/mlr3shiny/server/server_Learner.R | 100 +++++++--- mlr3shiny-0.2.0/mlr3shiny/inst/mlr3shiny/server/server_Resample.R | 5 mlr3shiny-0.2.0/mlr3shiny/inst/mlr3shiny/server/server_Task.R | 30 ++- mlr3shiny-0.2.0/mlr3shiny/inst/mlr3shiny/server/server_TrainFit.R | 2 mlr3shiny-0.2.0/mlr3shiny/inst/mlr3shiny/server/server_benchmarking.R | 27 +- mlr3shiny-0.2.0/mlr3shiny/inst/mlr3shiny/tests |only mlr3shiny-0.2.0/mlr3shiny/inst/mlr3shiny/ui.R | 18 + mlr3shiny-0.2.0/mlr3shiny/inst/mlr3shiny/ui/ui_Data.R | 1 mlr3shiny-0.2.0/mlr3shiny/man/figures |only mlr3shiny-0.2.0/mlr3shiny/tests/testthat/test-launchMlr3Shiny.R | 5 18 files changed, 246 insertions(+), 103 deletions(-)
Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the traditional
data frame.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
Romain Francois [ctb],
Jennifer Bryan [ctb],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tibble versions 3.1.4 dated 2021-08-25 and 3.1.5 dated 2021-09-30
DESCRIPTION | 10 MD5 | 68 ++--- NAMESPACE | 4 NEWS.md | 6 R/enframe.R | 2 R/options.R | 2 R/tibble-package.R | 2 R/tibble.R | 13 - build/vignette.rds |binary inst/doc/formats.html | 25 - inst/doc/invariants.html | 280 +++++++++------------- inst/doc/tibble.html | 19 - inst/doc/types.R | 1 inst/doc/types.Rmd | 1 inst/doc/types.html | 82 ++---- man/enframe.Rd | 2 man/lst.Rd | 5 man/tibble-package.Rd | 3 man/tibble.Rd | 13 - tests/testthat/_snaps/as_tibble.md | 72 ++--- tests/testthat/_snaps/msg.md | 126 ++++----- tests/testthat/_snaps/names.md | 10 tests/testthat/_snaps/subsetting.md | 4 tests/testthat/_snaps/vignette-formats/formats.md | 12 tests/testthat/test-as_tibble.R | 26 +- tests/testthat/test-msg.R | 2 tests/testthat/test-names.R | 2 tests/testthat/test-str.R | 2 tests/testthat/test-subsetting.R | 2 tests/testthat/test-tbl_df.R | 1 tests/testthat/test-vignette-formats.R | 3 tests/testthat/test-vignette-invariants.R | 1 tests/testthat/test-vignette-tibble.R | 1 tests/testthat/test-vignette-types.R | 1 vignettes/types.Rmd | 1 35 files changed, 393 insertions(+), 411 deletions(-)
Title: Create Dashboards with 'Shiny'
Description: Create dashboards with 'Shiny'. This package provides
a theme on top of 'Shiny', making it easy to create attractive dashboards.
Author: Winston Chang [aut, cre],
Barbara Borges Ribeiro [aut],
RStudio [cph],
Almasaeed Studio [ctb, cph] (AdminLTE theme for Bootstrap),
Adobe Systems Incorporated [ctb, cph] (Source Sans Pro font)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between shinydashboard versions 0.7.1 dated 2018-10-17 and 0.7.2 dated 2021-09-30
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 7 +++++++ R/menuOutput.R | 8 +++++++- README.md | 6 +++--- inst/AdminLTE/app.min.js | 2 +- inst/AdminLTE/app.min.js.map | 2 +- inst/shinydashboard.css | 4 ++++ inst/shinydashboard.min.js | 4 ++-- inst/shinydashboard.min.js.map | 2 +- 10 files changed, 38 insertions(+), 21 deletions(-)
More information about shinydashboard at CRAN
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More information about ractivecampaign at CRAN
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Title: 'pguIMP'
Description: Reproducible cleaning of bio-medical laboratory data using methods of visualization,error correction and transformation implemented as interactive R-notebooks.
Author: Sebastian Malkusch [aut, cre] (<https://orcid.org/0000-0001-6766-140X>),
Joern Loetsch [aut] (<https://orcid.org/0000-0002-5818-6958>)
Maintainer: Sebastian Malkusch <malkusch@med.uni-frankfurt.de>
Diff between pguIMP versions 0.0.0.2 dated 2021-07-22 and 0.0.0.3 dated 2021-09-30
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/pguLimitsOfQuantification.R | 4 ++-- inst/CITATION | 8 +++++--- 4 files changed, 13 insertions(+), 11 deletions(-)
Title: Bayesian Model Selection and Averaging for Non-Local and Local
Priors
Description: Bayesian model selection and averaging for regression and mixtures for non-local and selected local priors.
Author: David Rossell, John D. Cook, Donatello Telesca, P. Roebuck, Oriol Abril
Maintainer: David Rossell <rosselldavid@gmail.com>
Diff between mombf versions 3.0.4 dated 2021-07-13 and 3.0.6 dated 2021-09-30
ChangeLog | 7 ++ DESCRIPTION | 10 +-- MD5 | 30 +++++---- NAMESPACE | 1 R/AllGenerics.R | 11 +++ R/infocriteria.R |only R/modelSelection.R | 34 ++++++++++- R/modelSelectionGLM.R | 3 R/rmom.R | 58 +++++++++++-------- build/vignette.rds |binary data/hald.rda |binary inst/doc/mombf.R | 71 +---------------------- inst/doc/mombf.Rnw | 151 ++++++++++---------------------------------------- inst/doc/mombf.pdf |binary man/getBIC.Rd |only man/rnlp.Rd | 5 + vignettes/mombf.Rnw | 151 ++++++++++---------------------------------------- 17 files changed, 185 insertions(+), 347 deletions(-)
Title: Shiny App. Idiograms with Marks and Karyotype Indices
Description: Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with visible chromatids (when not circular). Supports micrometers, cM and Mb or any unit. Three styles of centromeres are available: triangular, rounded and inProtein; and six styles of marks are available: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow (downArrow), exProtein (inProtein); its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).
Author: Fernando Roa [aut, cre],
Mariana PC Telles [ctb]
Maintainer: Fernando Roa <froao@unal.edu.co>
Diff between idiogramFISH versions 2.0.5 dated 2021-05-21 and 2.0.6 dated 2021-09-30
idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/memory.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/obserColumnMod.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/obserDataframes.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/obserNuccore.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/obserPlot.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/obserPosButtons.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/obserPresets.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/obserSwap.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/outputDataframes.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/outputLogCode.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/outputMenu.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/outputNuccore.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/outputPanels.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/outputPlot.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/outputTabs.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/outputTabsetpanels.R |only idiogramFISH-2.0.5/idiogramFISH/inst/shinyApps/iBoard/www/refs/normal.bib |only idiogramFISH-2.0.5/idiogramFISH/man/figures/firstplot2.png |only idiogramFISH-2.0.5/idiogramFISH/man/figures/ggplot.svg |only idiogramFISH-2.0.5/idiogramFISH/man/figures/nostoc.jpg |only idiogramFISH-2.0.5/idiogramFISH/man/figures/nostocSmall.jpg |only idiogramFISH-2.0.5/idiogramFISH/man/figures/secondplot2.png |only idiogramFISH-2.0.5/idiogramFISH/man/figures/thirdplot2.png |only idiogramFISH-2.0.5/idiogramFISH/vignettes/refs/normal.bib |only idiogramFISH-2.0.6/idiogramFISH/DESCRIPTION | 19 idiogramFISH-2.0.6/idiogramFISH/MD5 | 214 - idiogramFISH-2.0.6/idiogramFISH/NAMESPACE | 5 idiogramFISH-2.0.6/idiogramFISH/NEWS.md | 38 idiogramFISH-2.0.6/idiogramFISH/R/addAttributesDfChrSize.R | 40 idiogramFISH-2.0.6/idiogramFISH/R/addNotes.R | 4 idiogramFISH-2.0.6/idiogramFISH/R/armRatioCI.R | 36 idiogramFISH-2.0.6/idiogramFISH/R/asymmetry.R | 114 idiogramFISH-2.0.6/idiogramFISH/R/checkNameChrDfMarks.R | 14 idiogramFISH-2.0.6/idiogramFISH/R/citrusSize.R | 2 idiogramFISH-2.0.6/idiogramFISH/R/mapXY.R | 57 idiogramFISH-2.0.6/idiogramFISH/R/markDistCenGISHfix.R | 11 idiogramFISH-2.0.6/idiogramFISH/R/orientation.R | 6 idiogramFISH-2.0.6/idiogramFISH/R/perMark.R | 192 - idiogramFISH-2.0.6/idiogramFISH/R/plotIdiograms.R | 714 ++--- idiogramFISH-2.0.6/idiogramFISH/R/posCalc.R | 1199 +++++++- idiogramFISH-2.0.6/idiogramFISH/R/removeNAFromList.R | 14 idiogramFISH-2.0.6/idiogramFISH/R/rulerPlot.R | 14 idiogramFISH-2.0.6/idiogramFISH/R/rulerTitle.R | 7 idiogramFISH-2.0.6/idiogramFISH/R/runBoard.R | 113 idiogramFISH-2.0.6/idiogramFISH/README.md | 35 idiogramFISH-2.0.6/idiogramFISH/build/vignette.rds |binary idiogramFISH-2.0.6/idiogramFISH/data/allChrSizeSample.rda |binary idiogramFISH-2.0.6/idiogramFISH/data/bigdfMarkPosHolo.rda |binary idiogramFISH-2.0.6/idiogramFISH/inst/doc/AVignette.R | 4 idiogramFISH-2.0.6/idiogramFISH/inst/doc/AVignette.Rmd | 14 idiogramFISH-2.0.6/idiogramFISH/inst/doc/AVignette.html | 12 idiogramFISH-2.0.6/idiogramFISH/inst/doc/index.R | 97 idiogramFISH-2.0.6/idiogramFISH/inst/doc/index.Rmd | 305 -- idiogramFISH-2.0.6/idiogramFISH/inst/doc/index.html | 228 - idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/obser |only idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/output |only idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/presetVals.R | 1407 +--------- idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/reactiveV.R | 8 idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/server.R | 67 idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/ui.R | 17 idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/www/DESCRIPTION | 14 idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/www/GitHub-Mark-120px-plus.png |only idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/www/README2.Rmd | 37 idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/www/colab-badge.svg |only idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/www/man/figures/cranmanualbookdown.svg | 2 idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/www/man/figures/cranversion.svg | 4 idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/www/man/figures/develmanualvignette.svg | 2 idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/www/man/figures/gitbadge.svg | 2 idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/www/man/figures/pkgdownver.svg | 2 idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/www/paramValues.rds |only idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/www/paramVec.rds |only idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/www/rda |only idiogramFISH-2.0.6/idiogramFISH/inst/shinyApps/iBoard/www/refs/normal_noabs.bib |only idiogramFISH-2.0.6/idiogramFISH/man/armRatioCI.Rd | 9 idiogramFISH-2.0.6/idiogramFISH/man/asymmetry.Rd | 6 idiogramFISH-2.0.6/idiogramFISH/man/citrusSize.Rd | 131 idiogramFISH-2.0.6/idiogramFISH/man/figures/GitHub-Mark-120px-plus.png |only idiogramFISH-2.0.6/idiogramFISH/man/figures/README-example-1.png |binary idiogramFISH-2.0.6/idiogramFISH/man/figures/README-example2-1.png |binary idiogramFISH-2.0.6/idiogramFISH/man/figures/README-unnamed-chunk-19-1.png |binary idiogramFISH-2.0.6/idiogramFISH/man/figures/colab-badge.svg |only idiogramFISH-2.0.6/idiogramFISH/man/figures/cranmanualbookdown.svg | 2 idiogramFISH-2.0.6/idiogramFISH/man/figures/cranversion.svg | 4 idiogramFISH-2.0.6/idiogramFISH/man/figures/develmanualvignette.svg | 2 idiogramFISH-2.0.6/idiogramFISH/man/figures/gitbadge.svg | 2 idiogramFISH-2.0.6/idiogramFISH/man/figures/manual.svg | 2 idiogramFISH-2.0.6/idiogramFISH/man/figures/pkgdownver.svg | 2 idiogramFISH-2.0.6/idiogramFISH/man/markDistCenGISHfix.Rd | 3 idiogramFISH-2.0.6/idiogramFISH/man/namesToColumns.Rd | 21 idiogramFISH-2.0.6/idiogramFISH/man/perMark.Rd | 25 idiogramFISH-2.0.6/idiogramFISH/man/plotIdiograms.Rd | 263 - idiogramFISH-2.0.6/idiogramFISH/man/posCalc.Rd | 72 idiogramFISH-2.0.6/idiogramFISH/man/removeNAFromList.Rd | 2 idiogramFISH-2.0.6/idiogramFISH/man/rulerPlot.Rd | 4 idiogramFISH-2.0.6/idiogramFISH/man/rulerTitle.Rd | 3 idiogramFISH-2.0.6/idiogramFISH/vignettes/AVignette.Rmd | 14 idiogramFISH-2.0.6/idiogramFISH/vignettes/index.Rmd | 305 -- idiogramFISH-2.0.6/idiogramFISH/vignettes/refs/normal_noabs.bib |only 98 files changed, 2958 insertions(+), 2984 deletions(-)
More information about AntibodyTiters at CRAN
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Title: Tools for Inference in the Presence of a Monotone Likelihood
Description: Proportional hazards estimation in the presence of a partially monotone likelihood has difficulties, in that finite estimators do not exist. These difficulties are related to those arising from logistic and multinomial regression. References for methods are given in the separate function documents. Supported by grant NSF DMS 1712839.
Author: John E. Kolassa and Juan Zhang
Maintainer: John E. Kolassa <kolassa@stat.rutgers.edu>
Diff between PHInfiniteEstimates versions 2.0 dated 2021-07-23 and 2.1 dated 2021-09-30
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 7 insertions(+), 7 deletions(-)
More information about PHInfiniteEstimates at CRAN
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Title: Multivariate Nonparametric Methods
Description: A collection of multivariate nonparametric methods, selected in part to support an MS level course in nonparametric statistical methods. Methods include adjustments for multiple comparisons, implementation of multivariate Mann-Whitney-Wilcoxon testing, inversion of these tests to produce a confidence region, some permutation tests for linear models, and some algorithms for calculating exact probabilities associated with one- and two- stage testing involving Mann-Whitney-Wilcoxon statistics. Supported by grant NSF DMS 1712839.
Author: John E. Kolassa [cre],
Stephane Jankowski [aut]
Maintainer: John E. Kolassa <kolassa@stat.rutgers.edu>
Diff between MultNonParam versions 1.3.5 dated 2021-06-03 and 1.3.6 dated 2021-09-30
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/powerplot.R | 58 ++++++++++++++++++++++++++++++++-------------------------- 3 files changed, 39 insertions(+), 33 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from 'RevMan 5';
- prediction interval, Hartung-Knapp method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression;
- generalised linear mixed models;
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut] (<https://orcid.org/0000-0001-6214-9087>)
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between meta versions 4.19-1 dated 2021-09-14 and 4.19-2 dated 2021-09-30
DESCRIPTION | 8 +-- MD5 | 22 ++++----- NEWS.md | 12 +++++ R/metabin.R | 128 +++++++++++++++++++++++++++++++-------------------------- R/metacont.R | 10 +++- R/metacor.R | 10 +++- R/metagen.R | 1 R/metainc.R | 16 ++++--- R/metamean.R | 10 +++- R/metaprop.R | 16 ++++--- R/metarate.R | 16 ++++--- man/metabin.Rd | 112 +++++++++++++++++++++++++++---------------------- 12 files changed, 211 insertions(+), 150 deletions(-)
Title: Data Class and Tools for Handling Spatial-Temporal Data
Description: Data class for increased interoperability working with spatial-
temporal data together with corresponding functions and methods (conversions,
basic calculations and basic data manipulation). The class distinguishes
between spatial, temporal and other dimensions to facilitate the development
and interoperability of tools build for it. Additional features are name-based
addressing of data and internal consistency checks (e.g. checking for the right
data order in calculations).
Author: Jan Philipp Dietrich [aut, cre],
Benjamin Leon Bodirsky [aut],
Markus Bonsch [aut],
Florian Humpenoeder [aut],
Stephen Bi [aut],
Kristine Karstens [aut],
Debbora Leip [aut],
Lavinia Baumstark [ctb],
Christoph Bertram [ctb],
Anastasis Giannousakis [ctb],
David Klein [ctb],
Ina Neher [ctb],
Michaja Pehl [ctb],
Anselm Schultes [ctb],
Miodrag Stevanovic [ctb],
Xiaoxi Wang [ctb],
Felicitas Beier [ctb]
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>
Diff between magclass versions 5.24.7 dated 2021-02-25 and 6.0.9 dated 2021-09-30
magclass-5.24.7/magclass/R/are_units_convertible.R |only magclass-5.24.7/magclass/R/calibrate_it.R |only magclass-5.24.7/magclass/R/convert.report.R |only magclass-5.24.7/magclass/R/getMetadata.R |only magclass-5.24.7/magclass/R/install_magpie_units.R |only magclass-5.24.7/magclass/R/is.quitte.R |only magclass-5.24.7/magclass/R/is_unit_installed.R |only magclass-5.24.7/magclass/R/lin.convergence.R |only magclass-5.24.7/magclass/R/magpieComp.R |only magclass-5.24.7/magclass/R/magpieResolution.R |only magclass-5.24.7/magclass/R/make.ISOyear.R |only magclass-5.24.7/magclass/R/mbind2.R |only magclass-5.24.7/magclass/R/old_dim_convention.R |only magclass-5.24.7/magclass/R/onLoad.R |only magclass-5.24.7/magclass/R/place_x_in_y.R |only magclass-5.24.7/magclass/R/read.LPJmL_nc.R |only magclass-5.24.7/magclass/R/remind2magpie.R |only magclass-5.24.7/magclass/R/set_magpie_units.R |only magclass-5.24.7/magclass/R/units.magpie.R |only magclass-5.24.7/magclass/R/updateMetadata.R |only magclass-5.24.7/magclass/R/withMetadata.R |only magclass-5.24.7/magclass/R/write.magpie.ncdf.R |only magclass-5.24.7/magclass/man/are_units_convertible.Rd |only magclass-5.24.7/magclass/man/calibrate_it.Rd |only magclass-5.24.7/magclass/man/convert.report.Rd |only magclass-5.24.7/magclass/man/getMetadata.Rd |only magclass-5.24.7/magclass/man/install_magpie_units.Rd |only magclass-5.24.7/magclass/man/is_unit_installed.Rd |only magclass-5.24.7/magclass/man/lin.convergence.Rd |only magclass-5.24.7/magclass/man/magpieComp.Rd |only magclass-5.24.7/magclass/man/magpieResolution.Rd |only magclass-5.24.7/magclass/man/old_dim_convention.Rd |only magclass-5.24.7/magclass/man/place_x_in_y.Rd |only magclass-5.24.7/magclass/man/read.lpjml_nc.Rd |only magclass-5.24.7/magclass/man/remind2magpie.Rd |only magclass-5.24.7/magclass/man/set_magpie_units.Rd |only magclass-5.24.7/magclass/man/units-set-.magpie.Rd |only magclass-5.24.7/magclass/man/updateMetadata.Rd |only magclass-5.24.7/magclass/man/withMetadata.Rd |only magclass-5.24.7/magclass/man/write.magpie.ncdf.Rd |only magclass-5.24.7/magclass/tests/testthat/test-metadata.R |only magclass-6.0.9/magclass/DESCRIPTION | 12 magclass-6.0.9/magclass/MD5 | 350 +- magclass-6.0.9/magclass/NAMESPACE | 29 magclass-6.0.9/magclass/R/add_columns.R | 66 magclass-6.0.9/magclass/R/add_dimension.R | 65 magclass-6.0.9/magclass/R/as.RasterBrick.R | 72 magclass-6.0.9/magclass/R/as.data.frame.R | 7 magclass-6.0.9/magclass/R/as.magpie.R | 543 +-- magclass-6.0.9/magclass/R/clean_magpie.R | 108 magclass-6.0.9/magclass/R/colMeans-method.R | 18 magclass-6.0.9/magclass/R/colSums-method.R | 32 magclass-6.0.9/magclass/R/collapseDim.R | 60 magclass-6.0.9/magclass/R/collapseNames.R | 100 magclass-6.0.9/magclass/R/complete_magpie.R | 70 magclass-6.0.9/magclass/R/convergence.R | 113 magclass-6.0.9/magclass/R/copy.magpie.R | 26 magclass-6.0.9/magclass/R/dimCode.R | 88 magclass-6.0.9/magclass/R/dimOrder.R | 51 magclass-6.0.9/magclass/R/dimReduce.R | 62 magclass-6.0.9/magclass/R/dimSums.R | 142 - magclass-6.0.9/magclass/R/fulldim.R | 63 magclass-6.0.9/magclass/R/getCPR.R | 64 magclass-6.0.9/magclass/R/getCells.R | 22 magclass-6.0.9/magclass/R/getCoords.R | 41 magclass-6.0.9/magclass/R/getItems.R | 182 - magclass-6.0.9/magclass/R/getNames.R | 136 magclass-6.0.9/magclass/R/getRegionList.R | 20 magclass-6.0.9/magclass/R/getRegions.R | 31 magclass-6.0.9/magclass/R/getSets.R | 92 magclass-6.0.9/magclass/R/getYears.R | 2 magclass-6.0.9/magclass/R/ifelse.R |only magclass-6.0.9/magclass/R/is-methods.R |only magclass-6.0.9/magclass/R/isYear.R | 54 magclass-6.0.9/magclass/R/lowpass.R | 93 magclass-6.0.9/magclass/R/magpie-class.R | 430 +-- magclass-6.0.9/magclass/R/magpie_expand.R | 314 -- magclass-6.0.9/magclass/R/magpie_expand_dim.R | 124 magclass-6.0.9/magclass/R/magpiesort.R | 26 magclass-6.0.9/magclass/R/magpply.R | 61 magclass-6.0.9/magclass/R/maxample.R | 31 magclass-6.0.9/magclass/R/mbind.R | 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magclass-6.0.9/magclass/R/where.R | 101 magclass-6.0.9/magclass/R/write.magpie.R | 535 +-- magclass-6.0.9/magclass/R/write.report.R | 284 +- magclass-6.0.9/magclass/R/write.report2.R | 180 - magclass-6.0.9/magclass/README.md | 12 magclass-6.0.9/magclass/build/vignette.rds |binary magclass-6.0.9/magclass/inst/doc/magclass-concept.R | 34 magclass-6.0.9/magclass/inst/doc/magclass-concept.Rmd | 34 magclass-6.0.9/magclass/inst/doc/magclass-concept.html | 515 +-- magclass-6.0.9/magclass/inst/doc/magclass-expansion.R | 41 magclass-6.0.9/magclass/inst/doc/magclass-expansion.Rmd | 45 magclass-6.0.9/magclass/inst/doc/magclass-expansion.html | 422 -- magclass-6.0.9/magclass/inst/doc/magclass.R | 60 magclass-6.0.9/magclass/inst/doc/magclass.Rmd | 60 magclass-6.0.9/magclass/inst/doc/magclass.html | 1415 ++++------ magclass-6.0.9/magclass/inst/doc/magclass6.R |only magclass-6.0.9/magclass/inst/doc/magclass6.Rmd |only magclass-6.0.9/magclass/inst/doc/magclass6.html |only magclass-6.0.9/magclass/inst/extdata/testdata |only magclass-6.0.9/magclass/man/add_columns.Rd | 27 magclass-6.0.9/magclass/man/add_dimension.Rd | 14 magclass-6.0.9/magclass/man/as.RasterBrick.Rd | 9 magclass-6.0.9/magclass/man/clean_magpie.Rd | 8 magclass-6.0.9/magclass/man/colSums-methods.Rd | 2 magclass-6.0.9/magclass/man/collapseDim.Rd | 17 magclass-6.0.9/magclass/man/collapseNames.Rd | 41 magclass-6.0.9/magclass/man/complete_magpie.Rd | 17 magclass-6.0.9/magclass/man/convergence.Rd | 11 magclass-6.0.9/magclass/man/copy.magpie.Rd | 4 magclass-6.0.9/magclass/man/dimCode.Rd | 9 magclass-6.0.9/magclass/man/dimOrder.Rd | 23 magclass-6.0.9/magclass/man/dimReduce.Rd | 27 magclass-6.0.9/magclass/man/dimSums.Rd | 38 magclass-6.0.9/magclass/man/fulldim.Rd | 7 magclass-6.0.9/magclass/man/getCPR.Rd | 19 magclass-6.0.9/magclass/man/getCells.Rd | 5 magclass-6.0.9/magclass/man/getCoords.Rd | 7 magclass-6.0.9/magclass/man/getItems.Rd | 25 magclass-6.0.9/magclass/man/getNames.Rd | 25 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insertions(+), 6711 deletions(-)
Title: Helpers for Model Coefficients Tibbles
Description: Provides suite of functions to work with regression
model 'broom::tidy()' tibbles. The suite includes functions to group
regression model terms by variable, insert reference and header rows
for categorical variables, add variable labels, and more.
Author: Joseph Larmarange [aut, cre] (<https://orcid.org/0000-0001-7097-700X>),
Daniel D. Sjoberg [aut] (<https://orcid.org/0000-0003-0862-2018>)
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between broom.helpers versions 1.3.0 dated 2021-04-10 and 1.4.0 dated 2021-09-30
DESCRIPTION | 16 MD5 | 60 - NAMESPACE | 3 NEWS.md | 18 R/model_get_model_matrix.R | 20 R/model_get_n.R | 4 R/model_get_terms.R | 10 R/model_get_xlevels.R | 4 R/select_utilities.R | 77 +- R/tidy_add_reference_rows.R | 138 +-- README.md | 192 ++--- build/vignette.rds |binary inst/WORDLIST | 4 inst/doc/tidy.R | 1 inst/doc/tidy.Rmd | 1 inst/doc/tidy.html | 701 ++++++++----------- man/model_get_model_matrix.Rd | 8 man/model_get_terms.Rd | 8 man/model_get_xlevels.Rd | 3 tests/testthat/test-add_coefficients_type.R | 3 tests/testthat/test-add_contrasts.R | 1 tests/testthat/test-add_estimate_to_reference_rows.R | 1 tests/testthat/test-add_n.R | 1 tests/testthat/test-add_reference_rows.R | 37 + tests/testthat/test-add_term_labels.R | 1 tests/testthat/test-add_variable_labels.R | 1 tests/testthat/test-identify_variables.R | 29 tests/testthat/test-model_get_n.R | 2 tests/testthat/test-select_helpers.R | 11 tests/testthat/test-tidy_plus_plus.R | 3 vignettes/tidy.Rmd | 1 31 files changed, 711 insertions(+), 648 deletions(-)
Title: Bindings for Generalized Additive Models (GAM)
Description: Fit Generalized Additive Models (GAM) using 'mgcv' with 'parsnip'/'tidymodels'
via 'additive' <doi:10.5281/zenodo.5539481>. 'tidymodels' is a collection of
packages for machine learning; see Kuhn and Wickham (2020) <https://www.tidymodels.org>).
The technical details of 'mgcv' are described in Wood (2017)
<doi:10.1201/9781315370279>.
Author: Hamada S. Badr [aut, cre] (<https://orcid.org/0000-0002-9808-2344>)
Maintainer: Hamada S. Badr <badr@jhu.edu>
Diff between additive versions 0.0.2 dated 2021-07-12 and 0.0.3 dated 2021-09-30
DESCRIPTION | 13 +++++++------ MD5 | 24 ++++++++++++------------ NEWS.md | 8 ++++++++ R/additive_make.R | 41 ++++++++++++++++++++++++----------------- README.md | 2 +- inst/CITATION | 2 +- inst/doc/BugReports.html | 4 ++-- inst/doc/GetStarted.R | 2 +- inst/doc/GetStarted.Rmd | 4 ++-- inst/doc/GetStarted.html | 14 ++++++-------- man/additive.Rd | 2 +- tests/testthat/test-additive.R | 6 ++---- vignettes/GetStarted.Rmd | 4 ++-- 13 files changed, 69 insertions(+), 57 deletions(-)
Title: Twitter Conversation Networks and Analysis
Description: Collects tweets and metadata for threaded conversations and generates networks.
Author: Bryan Gertzel [aut, cre],
Robert Ackland [ctb] (<https://orcid.org/0000-0002-0008-1766>),
Francisca Borquez [ctb]
Maintainer: Bryan Gertzel <bryan.gertzel@anu.edu.au>
Diff between voson.tcn versions 0.1.8 dated 2021-05-21 and 0.2.4 dated 2021-09-30
DESCRIPTION | 10 MD5 | 22 - NAMESPACE | 1 NEWS.md | 29 +- R/tcn_network.R | 134 ++++++--- R/tcn_threads.R | 670 ++++++++++++++++++++++++++++++----------------- R/tcn_token.R | 25 - R/tcn_tweets.R |only R/utils.R | 54 ++- README.md | 64 +++- man/tcn_threads.Rd | 105 ++++--- man/tcn_tweets.Rd |only man/voson.tcn-package.Rd | 8 13 files changed, 758 insertions(+), 364 deletions(-)
Title: A Calculator for Single-Case Effect Sizes
Description: Provides R functions for calculating basic effect size indices for
single-case designs, including several non-overlap measures and parametric
effect size measures, and for estimating the gradual effects model developed
by Swan and Pustejovsky (2018) <DOI:10.1080/00273171.2018.1466681>.
Standard errors and confidence intervals (based on the assumption that the outcome
measurements are mutually independent) are provided for the subset of effect sizes
indices with known sampling distributions.
Author: James E. Pustejovsky [aut, cre],
Man Chen [aut],
Daniel M. Swan [aut]
Maintainer: James E. Pustejovsky <jepusto@gmail.com>
Diff between SingleCaseES versions 0.4.4 dated 2021-04-30 and 0.5.0 dated 2021-09-30
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Title: Forecast Modelling for Online Applications
Description: A framework for fitting adaptive forecasting models. Provides a way to use forecasts as input to models, e.g. weather forecasts for energy related forecasting. The models can be fitted recursively and can easily be setup for updating parameters when new data arrives. See the included vignettes, the website <https://onlineforecasting.org> and the pre-print paper "onlineforecast: An R package for adaptive and recursive forecasting" <arXiv:2109.12915>.
Author: Peder Bacher [cre],
Hjorleifur G Bergsteinsson [aut]
Maintainer: Peder Bacher <pbac@dtu.dk>
Diff between onlineforecast versions 0.10.0 dated 2021-08-21 and 1.0.0 dated 2021-09-30
DESCRIPTION | 8 MD5 | 18 - R/data.list.R | 4 R/forecastmodel.R | 4 data/Dbuilding.rda |binary inst/CITATION | 31 -- inst/doc/forecast-evaluation.html | 575 +++++++++++++++++++------------------- inst/doc/model-selection.html | 329 +++++++++++---------- inst/doc/setup-and-use-model.html | 569 +++++++++++++++++++------------------ inst/doc/setup-data.html | 481 ++++++++++++++++--------------- 10 files changed, 1037 insertions(+), 982 deletions(-)
More information about onlineforecast at CRAN
Permanent link
Title: Funnel Plots for Comparing Institutional Performance
Description: An implementation of methods presented by Spiegelhalter (2005) <doi:10.1002/sim.1970> Funnel plots for comparing institutional performance, for standardised ratios, ratios of counts and proportions with additive overdispersion adjustment.
Author: Chris Mainey [aut, cre] (<https://orcid.org/0000-0002-3018-6171>),
Andrew Johnson [ctb],
Matthew Bass [ctb]
Maintainer: Chris Mainey <c.mainey@nhs.net>
Diff between FunnelPlotR versions 0.4.0 dated 2021-09-15 and 0.4.1 dated 2021-09-30
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/funnel_plot.R | 6 +++--- R/outliers_func.R | 19 ++++++++++--------- tests/testthat/test-outliers_func.R | 12 ++++++------ 6 files changed, 31 insertions(+), 26 deletions(-)
Title: Spatial Generalised Linear Mixed Models for Areal Unit Data
Description: Implements a class of univariate and multivariate spatial generalised linear mixed models for areal unit data, with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC) simulation. The response variable can be binomial, Gaussian, multinomial, Poisson or zero-inflated Poisson (ZIP), and spatial autocorrelation is modelled by a set of random effects that are assigned a conditional autoregressive (CAR) prior distribution. A number of different models are available for univariate spatial data, including models with no random effects as well as random effects modelled by different types of CAR prior, including the BYM model (Besag et al. (1991) <doi:10.1007/BF00116466>), the Leroux model (Leroux et al. (2000) <doi:10.1007/978-1-4612-1284-3_4>) and the localised model (Lee et al. (2015) <doi:10.1002/env.2348>). Additionally, a multivariate CAR (MCAR) model for multivariate spatial data is available, as is a two-level hierarchical model for modelling data relating to individuals within areas. Full details are given in the vignette accompanying this package. The initial creation of this package was supported by the Economic and Social Research Council (ESRC) grant RES-000-22-4256, and on-going development has been supported by the Engineering and Physical Science Research Council (EPSRC) grant EP/J017442/1, ESRC grant ES/K006460/1, Innovate UK / Natural Environment Research Council (NERC) grant NE/N007352/1 and the TB Alliance.
Author: Duncan Lee
Maintainer: Duncan Lee <Duncan.Lee@glasgow.ac.uk>
Diff between CARBayes versions 5.2.4 dated 2021-05-31 and 5.2.5 dated 2021-09-30
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++---------- R/zip.bymCAR.R | 13 +++++++++---- R/zip.glm.R | 13 +++++++++---- R/zip.lerouxCAR.R | 13 +++++++++---- build/vignette.rds |binary inst/CITATION | 4 ++-- inst/doc/CARBayes.Rnw | 6 +++--- inst/doc/CARBayes.pdf |binary man/CARBayes-package.Rd | 4 ++-- vignettes/CARBayes.Rnw | 6 +++--- 11 files changed, 53 insertions(+), 38 deletions(-)
Title: Automated Reporting of Results and Statistical Models
Description: The aim of the 'report' package is to bridge the gap between
R’s output and the formatted results contained in your manuscript.
This package converts statistical models and data frames into textual
reports suited for publication, ensuring standardization and quality
in results reporting.
Author: Dominique Makowski [aut, cre] (<https://orcid.org/0000-0001-5375-9967>,
@Dom_Makowski),
Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>,
@strengejacke),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>,
@mattansb),
Indrajeet Patil [aut] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets),
Rudolf Siegel [ctb] (<https://orcid.org/0000-0002-6021-804X>)
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between report versions 0.3.5 dated 2021-06-10 and 0.4.0 dated 2021-09-30
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102 files changed, 753 insertions(+), 831 deletions(-)
Title: Sparse Tables
Description: Fast Multiplication and Marginalization of Sparse Tables.
Author: Mads Lindskou [aut, cre]
Maintainer: Mads Lindskou <mads@math.aau.dk>
Diff between sparta versions 0.8.1 dated 2021-07-05 and 0.8.1.1 dated 2021-09-30
DESCRIPTION | 10 +++++----- MD5 | 11 ++++++----- NEWS.md | 5 +++++ R/api_sparta.R | 15 +++++++++------ R/helpers_misc.R | 2 ++ README.md |only inst/tinytest/test_sparta.R | 27 +++++++++++++++++++++++++++ 7 files changed, 54 insertions(+), 16 deletions(-)
Title: Exact Sequential Analysis for Poisson and Binomial Data
Description: Functions to calculate exact critical values, statistical power, expected time to signal, and required sample sizes for performing exact sequential analysis. All these calculations can be done for either Poisson or binomial data, for continuous or group sequential analyses, and for different types of rejection boundaries. In case of group sequential analyses, the group sizes do not have to be specified in advance and the alpha spending can be arbitrarily settled.
Author: Ivair Ramos Silva and Martin Kulldorff
Maintainer: Ivair Ramos Silva <ivair@ufop.edu.br>
Diff between Sequential versions 3.4 dated 2021-09-02 and 4.0 dated 2021-09-30
DESCRIPTION | 8 +- MD5 | 40 +++++++------- R/Analyze.Binomial.R | 23 +++++++- R/Analyze.Poisson.R | 91 ++++++++++++++++++++-------------- R/Analyze.wBinomial.R | 2 R/AnalyzeSetUp.Binomial.R | 7 +- R/AnalyzeSetUp.Poisson.R | 36 ++++++------- R/AnalyzeSetUp.wBinomial.R | 2 R/ConfidenceInterval.Binomial.R |only R/Optimal.Binomial.R | 21 +++++-- R/Performance.AlphaSpend.Poisson.R | 65 ++++++++++++------------ R/SampleSize.Poisson.R | 2 man/Analyze.Poisson.Rd | 5 + man/Analyze.wBinomial.Rd | 6 +- man/AnalyzeSetUp.Binomial.Rd | 8 +- man/AnalyzeSetUp.Poisson.Rd | 4 + man/AnalyzeSetUp.wBinomial.Rd | 2 man/ConfidenceInterval.Binomial.Rd |only man/Optimal.Binomial.Rd | 7 +- man/Performance.AlphaSpend.Poisson.Rd | 3 - man/Performance.Threshold.Binomial.Rd | 2 man/Sequential-package.Rd | 12 +++- 22 files changed, 206 insertions(+), 140 deletions(-)
Title: Relational Data Models
Description: Provides tools for working with multiple related
tables, stored as data frames or in a relational database. Multiple
tables (data and metadata) are stored in a compound object, which can
then be manipulated with a pipe-friendly syntax.
Author: Tobias Schieferdecker [aut],
Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Darko Bergant [aut],
Katharina Brunner [ctb],
James Wondrasek [ctb],
energie360° AG [fnd],
cynkra GmbH [fnd, cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between dm versions 0.2.3 dated 2021-06-20 and 0.2.4 dated 2021-09-30
dm-0.2.3/dm/vignettes/flights_dm_w_many_keys_and_color.svg |only dm-0.2.4/dm/DESCRIPTION | 20 dm-0.2.4/dm/MD5 | 141 +- dm-0.2.4/dm/NAMESPACE | 28 dm-0.2.4/dm/NEWS.md | 29 dm-0.2.4/dm/R/check_suggested.R | 43 dm-0.2.4/dm/R/datamodelr-code.R | 11 dm-0.2.4/dm/R/db-helpers.R | 2 dm-0.2.4/dm/R/dm-from-src.R | 6 dm-0.2.4/dm/R/dm.R | 93 + dm-0.2.4/dm/R/dplyr.R | 4 dm-0.2.4/dm/R/draw-dm.R | 2 dm-0.2.4/dm/R/error-helpers.R | 2 dm-0.2.4/dm/R/examine-constraints.R | 25 dm-0.2.4/dm/R/financial.R | 12 dm-0.2.4/dm/R/format.R | 8 dm-0.2.4/dm/R/new_ticker.R | 7 dm-0.2.4/dm/R/paste.R | 5 dm-0.2.4/dm/R/pkgdown.R | 6 dm-0.2.4/dm/R/reexport.R | 3 dm-0.2.4/dm/R/rows-db.R | 730 +++++++++++-- dm-0.2.4/dm/R/rows-dm.R | 5 dm-0.2.4/dm/R/schema.R | 7 dm-0.2.4/dm/R/select-tbl.R | 2 dm-0.2.4/dm/R/testthat-wrappers.R | 11 dm-0.2.4/dm/R/validate.R | 8 dm-0.2.4/dm/R/zzx-deprecated.R | 34 dm-0.2.4/dm/build/vignette.rds |binary dm-0.2.4/dm/inst/doc/dm.html | 281 +++-- dm-0.2.4/dm/inst/doc/howto-dm-copy.Rmd | 2 dm-0.2.4/dm/inst/doc/howto-dm-copy.html | 370 ++++-- dm-0.2.4/dm/inst/doc/howto-dm-db.Rmd | 10 dm-0.2.4/dm/inst/doc/howto-dm-db.html | 378 +++++- dm-0.2.4/dm/inst/doc/howto-dm-df.R | 2 dm-0.2.4/dm/inst/doc/howto-dm-df.Rmd | 2 dm-0.2.4/dm/inst/doc/howto-dm-df.html | 611 +++++++++- dm-0.2.4/dm/inst/doc/howto-dm-rows.html | 317 +++-- dm-0.2.4/dm/inst/doc/howto-dm-theory.html | 309 ++++- dm-0.2.4/dm/inst/doc/tech-dm-cdm.html | 13 dm-0.2.4/dm/inst/doc/tech-dm-class.html | 203 ++- dm-0.2.4/dm/inst/doc/tech-dm-draw.R | 10 dm-0.2.4/dm/inst/doc/tech-dm-draw.html | 327 +++++ dm-0.2.4/dm/inst/doc/tech-dm-filter.html | 185 ++- dm-0.2.4/dm/inst/doc/tech-dm-join.Rmd | 2 dm-0.2.4/dm/inst/doc/tech-dm-join.html | 113 +- dm-0.2.4/dm/inst/doc/tech-dm-low-level.html | 17 dm-0.2.4/dm/inst/doc/tech-dm-zoom.html | 652 +++++++++++ dm-0.2.4/dm/man/dm_financial.Rd | 2 dm-0.2.4/dm/man/get_returned_rows.Rd |only dm-0.2.4/dm/man/reexports.Rd | 3 dm-0.2.4/dm/man/rows-db.Rd | 104 + dm-0.2.4/dm/tests/testthat/_snaps/bind.md | 126 +- dm-0.2.4/dm/tests/testthat/_snaps/check_suggested.md |only dm-0.2.4/dm/tests/testthat/_snaps/dm.md | 162 ++ dm-0.2.4/dm/tests/testthat/_snaps/dplyr.md | 14 dm-0.2.4/dm/tests/testthat/_snaps/error-helpers.md | 2 dm-0.2.4/dm/tests/testthat/_snaps/examine-constraints.md | 18 dm-0.2.4/dm/tests/testthat/_snaps/rows-db.md | 215 +++ dm-0.2.4/dm/tests/testthat/helper-expectations.R | 8 dm-0.2.4/dm/tests/testthat/helper-src.R | 26 dm-0.2.4/dm/tests/testthat/test-bind.R | 14 dm-0.2.4/dm/tests/testthat/test-check_suggested.R |only dm-0.2.4/dm/tests/testthat/test-db-interface.R | 2 dm-0.2.4/dm/tests/testthat/test-dm.R | 27 dm-0.2.4/dm/tests/testthat/test-dplyr.R | 27 dm-0.2.4/dm/tests/testthat/test-learn.R | 4 dm-0.2.4/dm/tests/testthat/test-pool-support.R |only dm-0.2.4/dm/tests/testthat/test-rows-db.R | 196 +++ dm-0.2.4/dm/tests/testthat/test-zoom.R | 7 dm-0.2.4/dm/vignettes/howto-dm-copy.Rmd | 2 dm-0.2.4/dm/vignettes/howto-dm-db.Rmd | 10 dm-0.2.4/dm/vignettes/howto-dm-df.Rmd | 2 dm-0.2.4/dm/vignettes/setup/setup.R | 9 dm-0.2.4/dm/vignettes/tech-dm-join.Rmd | 2 74 files changed, 5064 insertions(+), 966 deletions(-)
Title: Facilitates ODBC Database Interaction
Description: Facilitates interaction with ODBC data sources, by remembering communication settings and supporting parameterised multi-statement SQL with embedded R.
Author: Mike Lee
Maintainer: Mike Lee <random.deviate@gmail.com>
Diff between SQRL versions 0.8.0 dated 2021-03-07 and 1.0.0 dated 2021-09-30
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++++------ R/SQRL.R | 10 ++++------ build |only inst |only man/SQRL-package.Rd | 7 +------ man/sqrlParams.Rd | 33 +++++++++++++++++---------------- man/sqrlScript.Rd | 10 +++++----- man/sqrlSource.Rd | 14 +++++++++++--- vignettes |only 10 files changed, 53 insertions(+), 47 deletions(-)
Title: Interface with 'Nominatim' API Service
Description: Lite interface for getting data from 'OSM' service
'Nominatim' <https://nominatim.org/release-docs/latest/>. Extract
coordinates from addresses, find places near a set of coordinates,
search for amenities and return spatial objects on 'sf' format.
Author: Diego Hernangómez [aut, cre, cph]
(<https://orcid.org/0000-0001-8457-4658>),
Jindra Lacko [ctb, rev],
OpenStreetMap contributors [cph] (for the data.)
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>
Diff between nominatimlite versions 0.1.0 dated 2021-09-16 and 0.1.1 dated 2021-09-30
DESCRIPTION | 32 +++++++------ MD5 | 67 ++++++++++++++-------------- NEWS.md | 30 +++++++----- R/geo_address_lookup.R | 10 ++-- R/geo_address_lookup_sf.R | 10 ++-- R/geo_amenity.R | 16 ++++-- R/geo_amenity_sf.R | 10 ++-- R/geo_lite.R | 12 +++-- R/geo_lite_sf.R | 10 ++-- R/reverse_geo_lite.R | 15 ++++-- R/reverse_geo_lite_sf.R | 11 +++- README.md | 53 ++++++++++++++-------- data/osm_amenities.rda |binary inst/CITATION | 21 ++++---- inst/WORDLIST |only inst/doc/nominatimlite.R | 15 +++--- inst/doc/nominatimlite.html | 4 - man/figures/README-McDonalds-1.png |binary man/figures/README-line-object-1.png |binary man/figures/README-penta-1.png |binary man/geo_address_lookup.Rd | 1 man/geo_amenity.Rd | 9 ++- man/geo_lite.Rd | 1 man/nominatimlite-package.Rd | 5 -- man/reverse_geo_lite.Rd | 1 tests/testthat/test-geo_address_lookup.R | 10 +++- tests/testthat/test-geo_address_lookup_sf.R | 8 ++- tests/testthat/test-geo_amenity.R | 10 +++- tests/testthat/test-geo_amenity_sf.R | 7 ++ tests/testthat/test-geo_lite.R | 10 +++- tests/testthat/test-geo_lite_sf.R | 7 ++ tests/testthat/test-reverse_geo_lite.R | 10 +--- tests/testthat/test-reverse_geo_lite_sf.R | 10 +--- vignettes/McDonalds-1.png |binary vignettes/penta-1.png |binary 35 files changed, 247 insertions(+), 158 deletions(-)
Title: Operations to Ease Data Analyses Specific to Nigeria
Description: A set of convenience functions as well as geographical/political
data about Nigeria, aimed at simplifying work with data and information that
are specific to the country.
Author: Victor Ordu [aut, cre] (<https://orcid.org/0000-0003-3716-0668>)
Maintainer: Victor Ordu <victorordu@outlook.com>
Diff between naijR versions 0.3.0 dated 2021-09-08 and 0.3.1 dated 2021-09-30
naijR-0.3.0/naijR/R/helps.R |only naijR-0.3.1/naijR/DESCRIPTION | 8 - naijR-0.3.1/naijR/MD5 | 25 ++--- naijR-0.3.1/naijR/R/class-regions.R | 55 +++++++++-- naijR-0.3.1/naijR/R/map_nigeria.R | 65 +++++++------ naijR-0.3.1/naijR/data/lgas_nigeria.rda |binary naijR-0.3.1/naijR/inst/doc/nigeria-maps.Rmd | 1 naijR-0.3.1/naijR/inst/doc/nigeria-maps.html | 20 ++-- naijR-0.3.1/naijR/man/lgas.Rd | 18 ++- naijR-0.3.1/naijR/man/map_ng.Rd | 2 naijR-0.3.1/naijR/tests/testthat/test-class-regions.R | 32 ++++++ naijR-0.3.1/naijR/tests/testthat/test-map_nigeria.R | 40 ++++---- naijR-0.3.1/naijR/tests/testthat/test-methods-fix_region.R | 3 naijR-0.3.1/naijR/vignettes/nigeria-maps.Rmd | 1 14 files changed, 183 insertions(+), 87 deletions(-)
Title: Analysis of Plant Pathogen Pathotype Complexities, Distributions
and Diversity
Description: Analysis of plant pathogen pathotype survey data. Functions
provided calculate distribution of susceptibilities, distribution of
complexities with statistics, pathotype frequency distribution, as well as
diversity indices for pathotypes. This package is meant to be a direct
replacement for Herrmann, Löwer and Schachtel's (1999)
<doi:10.1046/j.1365-3059.1999.00325.x> Habgood-Gilmour Spreadsheet, 'HaGiS',
previously used for pathotype analysis.
Author: Austin G. McCoy [aut, ccp] (<https://orcid.org/0000-0003-2483-4184>),
Zachary Noel [aut, ccp] (<https://orcid.org/0000-0001-6375-8300>),
Adam H. Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Martin Chilvers [aut, ths] (<https://orcid.org/0000-0001-8832-1666>),
Zhian N. Kamvar [ctb, rev] (<https://orcid.org/0000-0003-1458-7108>),
Michigan Soybean Promotion Committee [fnd],
Project GREEEN [fnd],
North Central Soybean Research Program [fnd],
GRDC Project DAQ00186 [fnd]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between hagis versions 3.1.1 dated 2020-12-09 and 3.1.2 dated 2021-09-30
hagis-3.1.1/hagis/R/zzz.R |only hagis-3.1.2/hagis/DESCRIPTION | 14 - hagis-3.1.2/hagis/MD5 | 53 ++--- hagis-3.1.2/hagis/NEWS.md | 18 + hagis-3.1.2/hagis/R/calculate_complexities.R | 23 +- hagis-3.1.2/hagis/R/calculate_diversities.R | 12 - hagis-3.1.2/hagis/R/create_binary_matrix.R | 5 hagis-3.1.2/hagis/R/data.R | 22 +- hagis-3.1.2/hagis/R/internal_functions.R | 2 hagis-3.1.2/hagis/R/summarize_gene.R | 13 - hagis-3.1.2/hagis/R/utils-data-table.R |only hagis-3.1.2/hagis/README.md | 111 +++++++---- hagis-3.1.2/hagis/build/vignette.rds |binary hagis-3.1.2/hagis/inst/WORDLIST |only hagis-3.1.2/hagis/inst/doc/betadiversity.R | 35 ++- hagis-3.1.2/hagis/inst/doc/betadiversity.Rmd | 39 ++- hagis-3.1.2/hagis/inst/doc/betadiversity.html | 86 +++++--- hagis-3.1.2/hagis/inst/doc/hagis.R | 6 hagis-3.1.2/hagis/inst/doc/hagis.Rmd | 6 hagis-3.1.2/hagis/inst/doc/hagis.html | 87 +++----- hagis-3.1.2/hagis/man/autoplot.hagis.complexities.Rd | 13 - hagis-3.1.2/hagis/man/autoplot.hagis.gene.summary.Rd | 10 hagis-3.1.2/hagis/man/create_binary_matrix.Rd | 3 hagis-3.1.2/hagis/man/diversities_table.Rd | 2 hagis-3.1.2/hagis/man/hagis-package.Rd | 10 hagis-3.1.2/hagis/man/individual_pathotypes.Rd | 2 hagis-3.1.2/hagis/tests/testthat/test-create_binary_matrix.R | 2 hagis-3.1.2/hagis/vignettes/betadiversity.Rmd | 39 ++- hagis-3.1.2/hagis/vignettes/hagis.Rmd | 6 29 files changed, 347 insertions(+), 272 deletions(-)