Title: Data for Wordpiece-Style Tokenization
Description: Provides data to be used by the wordpiece algorithm in order to
tokenize text into somewhat meaningful chunks. Included vocabularies were
retrieved from
<https://huggingface.co/bert-base-cased/resolve/main/vocab.txt> and
<https://huggingface.co/bert-base-uncased/resolve/main/vocab.txt> and parsed
into an R-friendly format.
Author: Jonathan Bratt [aut] (<https://orcid.org/0000-0003-2859-0076>),
Jon Harmon [aut, cre] (<https://orcid.org/0000-0003-4781-4346>),
Bedford Freeman & Worth Pub Grp LLC DBA Macmillan Learning [cph],
Google, Inc [cph] (original BERT vocabularies)
Maintainer: Jon Harmon <jonthegeek@gmail.com>
Diff between wordpiece.data versions 1.0.1 dated 2021-09-28 and 1.0.2 dated 2021-10-08
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 8 ++++++++ README.md | 7 +++---- inst/rds/wordpiece_cased_28996.rds |binary inst/rds/wordpiece_uncased_30522.rds |binary 6 files changed, 21 insertions(+), 14 deletions(-)
More information about wordpiece.data at CRAN
Permanent link
Title: Dirichlet Process Bayesian Clustering, Profile Regression
Description: Bayesian clustering using a Dirichlet process mixture model. This model is an alternative to regression models, non-parametrically linking a response vector to covariate data through cluster membership. The package allows Bernoulli, Binomial, Poisson, Normal, survival and categorical response, as well as Normal and discrete covariates. It also allows for fixed effects in the response model, where a spatial CAR (conditional autoregressive) term can be also included. Additionally, predictions may be made for the response, and missing values for the covariates are handled. Several samplers and label switching moves are implemented along with diagnostic tools to assess convergence. A number of R functions for post-processing of the output are also provided. In addition to fitting mixtures, it may additionally be of interest to determine which covariates actively drive the mixture components. This is implemented in the package as variable selection. The main reference for the package is Liverani, Hastie, Azizi, Papathomas and Richardson (2015) <doi:10.18637/jss.v064.i07>.
Author: David I. Hastie, Silvia Liverani <liveranis@gmail.com> and Sylvia Richardson with contributions from Aurore J. Lavigne, Lucy Leigh, Lamiae Azizi, Xi Liu, Ruizhu Huang, Austin Gratton, Wei Jing
Maintainer: Silvia Liverani <liveranis@gmail.com>
Diff between PReMiuM versions 3.2.6 dated 2021-04-26 and 3.2.7 dated 2021-10-08
ChangeLog | 4 +- DESCRIPTION | 6 ++-- MD5 | 49 ++++++++++++++++++------------------ build |only inst/CITATION | 4 +- man/PReMiuM-package.Rd | 2 - man/calcAvgRiskAndProfile.Rd | 2 - man/calcDissimilarityMatrix.Rd | 2 - man/calcOptimalClustering.Rd | 2 - man/calcPredictions.Rd | 2 - man/clusSummaryBernoulliDiscrete.Rd | 2 - man/computeRatioOfVariance.Rd | 2 - man/generateSampleDataFile.Rd | 2 - man/globalParsTrace.Rd | 2 - man/heatDissMat.Rd | 2 - man/is.wholenumber.Rd | 2 - man/mapforGeneratedData.Rd | 2 - man/margModelPosterior.Rd | 2 - man/plotPredictions.Rd | 2 - man/plotRiskProfile.Rd | 2 - man/profRegr.Rd | 2 - man/rALD.Rd | 2 - man/setHyperparams.Rd | 2 - man/simBenchmark.Rd | 2 - man/summariseVarSelectRho.Rd | 2 - man/vec2mat.Rd | 2 - 26 files changed, 53 insertions(+), 52 deletions(-)
Title: Estimation and Projection of Age-Specific Mortality Rates
Description: Age-specific mortality rates are estimated and projected using
the Kannisto, Lee-Carter and related methods as described in
Sevcikova et al. (2016) <doi:10.1007/978-3-319-26603-9_15>.
Author: Hana Sevcikova, Nan Li and Patrick Gerland
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between MortCast versions 2.4-0 dated 2021-06-23 and 2.6-0 dated 2021-10-08
MortCast-2.4-0/MortCast/src/life_tables.c |only MortCast-2.6-0/MortCast/ChangeLog | 9 ++ MortCast-2.6-0/MortCast/DESCRIPTION | 8 +- MortCast-2.6-0/MortCast/MD5 | 28 +++---- MortCast-2.6-0/MortCast/R/LC.R | 1 MortCast-2.6-0/MortCast/R/MortCast-data.R | 5 + MortCast-2.6-0/MortCast/R/life_table.R | 10 +- MortCast-2.6-0/MortCast/R/other_methods.R | 96 +++++++++++++++++++++----- MortCast-2.6-0/MortCast/build/partial.rdb |binary MortCast-2.6-0/MortCast/data/MLT1Ylookup.rda |binary MortCast-2.6-0/MortCast/data/MLTlookup.rda |binary MortCast-2.6-0/MortCast/man/MLTlookup.Rd | 6 + MortCast-2.6-0/MortCast/man/mltgroup.Rd | 8 +- MortCast-2.6-0/MortCast/man/mortcast.blend.Rd | 27 +++++-- MortCast-2.6-0/MortCast/src/functions.c |only MortCast-2.6-0/MortCast/src/init.c | 8 +- 16 files changed, 152 insertions(+), 54 deletions(-)
Title: Interface to the Numerai Machine Learning Tournament API
Description: Routines to interact with the Numerai Machine Learning Tournament
API <https://numer.ai>. The functionality includes the ability to automatically download the
current tournament data, submit predictions, and to get information for your
user. General 'GraphQL' queries can also be executed.
Author: Omni Analytics Group [aut],
Eric Hare [cre]
Maintainer: Eric Hare <eric@omnianalytics.io>
Diff between Rnumerai versions 2.1.3 dated 2021-08-20 and 2.1.4 dated 2021-10-08
DESCRIPTION | 11 + MD5 | 12 +- NAMESPACE | 3 R/source.R | 269 +++++++++++++++++++++++++++++++--------------- README.md | 5 man/download_data.Rd | 20 ++- man/submit_predictions.Rd | 6 + 7 files changed, 226 insertions(+), 100 deletions(-)
Title: Command Line Option Parser
Description: A command line parser inspired by Python's 'optparse' library to
be used with Rscript to write "#!" shebang scripts that accept short and
long flag/options.
Author: Trevor L Davis [aut, cre],
Allen Day [ctb] (Some documentation and examples ported from the getopt
package.),
Python Software Foundation [ctb] (Some documentation from the optparse
Python module.),
Steve Lianoglou [ctb],
Jim Nikelski [ctb],
Kirill Müller [ctb],
Peter Humburg [ctb],
Rich FitzJohn [ctb],
Gyu Jin Choi [ctb]
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between optparse versions 1.6.6 dated 2020-04-16 and 1.7.1 dated 2021-10-08
DESCRIPTION | 10 ++-- MD5 | 33 +++++++------ NAMESPACE | 2 NEWS.md | 8 +++ R/optparse-package.R | 2 R/optparse.R | 80 +++++++++++++++++++++++++++++--- README.md | 101 ++++++++++++++++------------------------- build/vignette.rds |binary inst/doc/optparse.html | 38 +++++++-------- man/OptionParser-class.Rd | 4 + man/OptionParser.Rd | 12 +++- man/add_make_option.Rd | 8 +-- man/figures |only man/formatter.Rd |only man/optparse-package.Rd | 4 - man/parse_args.Rd | 24 ++++----- man/print_help.Rd | 2 tests/testthat/test-optparse.R | 5 +- 18 files changed, 203 insertions(+), 130 deletions(-)
Title: Management of Survey Data and Presentation of Analysis Results
Description: An infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) 'SPSS' and
'Stata' files is provided. Further, the package allows to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates, which can be exported to 'LaTeX' and HTML.
Author: Martin Elff (with contributions from Christopher N. Lawrence, Dave Atkins, Jason W. Morgan, Achim Zeileis)
Maintainer: Martin Elff <memisc@elff.eu>
Diff between memisc versions 0.99.27.3 dated 2020-11-18 and 0.99.30.7 dated 2021-10-08
memisc-0.99.27.3/memisc/man/auto |only memisc-0.99.30.7/memisc/DESCRIPTION | 11 memisc-0.99.30.7/memisc/MD5 | 83 memisc-0.99.30.7/memisc/NAMESPACE | 23 memisc-0.99.30.7/memisc/R/Means.R |only memisc-0.99.30.7/memisc/R/cases.R | 103 - memisc-0.99.30.7/memisc/R/codebook-methods.R | 4 memisc-0.99.30.7/memisc/R/contract.R |only memisc-0.99.30.7/memisc/R/dataset-methods.R | 29 memisc-0.99.30.7/memisc/R/format-html-dataframe.R | 2 memisc-0.99.30.7/memisc/R/format-html-ftable.R | 2 memisc-0.99.30.7/memisc/R/format-html-matrix.R | 7 memisc-0.99.30.7/memisc/R/importer-methods.R | 8 memisc-0.99.30.7/memisc/R/item-methods.R | 2 memisc-0.99.30.7/memisc/R/mtable-format-delim.R | 48 memisc-0.99.30.7/memisc/R/mtable-format-html.R | 57 memisc-0.99.30.7/memisc/R/mtable-format-latex.R | 150 - memisc-0.99.30.7/memisc/R/mtable-format-print.R | 141 - memisc-0.99.30.7/memisc/R/mtable-tools-format.R | 8 memisc-0.99.30.7/memisc/R/mtable.R | 66 memisc-0.99.30.7/memisc/R/percentages.R | 4 memisc-0.99.30.7/memisc/R/recode.R | 139 + memisc-0.99.30.7/memisc/R/reversed.R |only memisc-0.99.30.7/memisc/R/spss-portable-methods.R | 1 memisc-0.99.30.7/memisc/R/spss-syntax-methods.R | 1 memisc-0.99.30.7/memisc/R/spss-sysfile-methods.R | 21 memisc-0.99.30.7/memisc/R/stata-methods.R | 3 memisc-0.99.30.7/memisc/R/tibbles.R | 43 memisc-0.99.30.7/memisc/R/trim-labels.R |only memisc-0.99.30.7/memisc/R/value-filters.R | 12 memisc-0.99.30.7/memisc/build/vignette.rds |binary memisc-0.99.30.7/memisc/inst/ChangeLog | 47 memisc-0.99.30.7/memisc/inst/NEWS.Rd | 28 memisc-0.99.30.7/memisc/inst/doc/anes48.html | 1745 +++++++++----------- memisc-0.99.30.7/memisc/inst/doc/ftable-matrix.html | 1006 +++++------ memisc-0.99.30.7/memisc/inst/doc/items.html | 76 memisc-0.99.30.7/memisc/inst/doc/mtable-html.html | 376 ++-- memisc-0.99.30.7/memisc/man/Means.Rd |only memisc-0.99.30.7/memisc/man/cases.Rd | 108 + memisc-0.99.30.7/memisc/man/contract.Rd |only memisc-0.99.30.7/memisc/man/dataset-manip.Rd | 10 memisc-0.99.30.7/memisc/man/importers.Rd | 12 memisc-0.99.30.7/memisc/man/recode.Rd | 27 memisc-0.99.30.7/memisc/man/reversed.Rd |only memisc-0.99.30.7/memisc/man/syntactic-sugar.Rd | 2 memisc-0.99.30.7/memisc/man/trim-labels.Rd |only memisc-0.99.30.7/memisc/src/readfixed.c | 5 47 files changed, 2347 insertions(+), 2063 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-12 0.2.25
2021-05-19 0.2.24
2021-04-17 0.2.22
2019-12-06 0.2.21
2019-09-20 0.2.20
2019-04-26 0.2.19
2019-03-28 0.2.18
2018-12-14 0.2.17
2018-03-23 0.2.14
2018-02-28 0.2.13
2018-02-12 0.2.12
2017-10-14 0.2.11
2017-09-19 0.2.10
2016-03-08 0.2.9
2015-05-13 0.2.8
2015-03-17 0.2.6
2015-02-24 0.2.5
2015-01-28 0.2.4
Title: Best Split Selection Modeling for Low-Dimensional Data
Description: Functions to generate or sample from all possible splits of features or variables
into a number of specified groups. Also computes the best split selection estimator
(for low-dimensional data) as defined in Christidis, Van Aelst and Zamar (2019)
<arXiv:1812.05678>.
Author: Anthony Christidis <anthony.christidis@stat.ubc.ca>,
Stefan Van Aelst <stefan.vanaelst@kuleuven.be>,
Ruben Zamar <ruben@stat.ubc.ca>
Maintainer: Anthony Christidis <anthony.christidis@stat.ubc.ca>
Diff between splitSelect versions 1.0.1 dated 2020-09-01 and 1.0.2 dated 2021-10-08
DESCRIPTION | 12 - MD5 | 13 + NAMESPACE | 3 NEWS.md | 2 R/create_folds.R |only R/cv.splitSelect.R | 2 R/generate_partitions.R | 2 README.md | 332 ++++++++++++++++++++++++------------------------ 8 files changed, 185 insertions(+), 181 deletions(-)
Title: Mixtures of von Mises-Fisher Distributions
Description: Fit and simulate mixtures of von Mises-Fisher distributions.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Bettina Grün [aut] (<https://orcid.org/0000-0001-7265-4773>)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between movMF versions 0.2-5 dated 2020-10-12 and 0.2-6 dated 2021-10-08
DESCRIPTION | 6 +- MD5 | 16 ++--- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 7 ++ inst/doc/movMF.Rnw | 10 +-- inst/doc/movMF.pdf |binary vignettes/movMF.Rnw | 10 +-- vignettes/vMF.bib | 151 ++++++++++++++++++++++++---------------------------- 9 files changed, 97 insertions(+), 103 deletions(-)
Title: Working Examples for Reproducible Research Documents
Description: Templates, guides, and scripts for
writing documents in 'LaTeX' and 'R markdown' to produce
guides, slides, and reports. Special care is taken to
illustrate use of templates and customization opportunities.
Challenges and opportunities of 'HTML' output from 'R markdown'
receive special attention. Includes several vignettes
to assist new users of literate programming.
Author: Paul Johnson [aut, cre],
Brent Kaplan [ctb],
Meghan Sullivan [ctb],
Charles Redmon [ctb],
Zack Roman [ctb],
Chong Xing [ctb],
Longcan 'Emma' Huang [ctb],
Garrett Mills [ctb]
Maintainer: Paul Johnson <pauljohn@ku.edu>
Diff between stationery versions 0.98.30 dated 2020-04-28 and 1.0 dated 2021-10-08
DESCRIPTION | 11 - MD5 | 32 +-- build/vignette.rds |binary inst/doc/HTML_special_features.Rmd | 10 inst/doc/HTML_special_features.html | 374 +++++++++++++++++++----------------- inst/doc/Rmarkdown.Rmd | 2 inst/doc/Rmarkdown.pdf |binary inst/doc/code_chunks.R | 2 inst/doc/code_chunks.Rmd | 2 inst/doc/code_chunks.pdf |binary inst/doc/stationery.Rnw | 8 inst/doc/stationery.pdf |binary vignettes/HTML_special_features.Rmd | 10 vignettes/Rmarkdown.Rmd | 2 vignettes/code_chunks.Rmd | 2 vignettes/stationery.Rnw | 8 vignettes/stationery.lyx | 4 17 files changed, 253 insertions(+), 214 deletions(-)
Title: Label Attributes for Atomic Vectors
Description: Labels are a common construct in statistical software providing a
human readable description of a variable. While variable names are succinct,
quick to type, and follow a language's naming conventions, labels may
be more illustrative and may use plain text and spaces. R does not provide
native support for labels. Some packages, however, have made this feature
available. Most notably, the 'Hmisc' package provides labelling methods
for a number of different object. Due to design decisions, these methods
are not all exported, and so are unavailable for use in package development.
The 'labelVector' package supports labels for atomic vectors in a light-weight
design that is suitable for use in other packages.
Author: Benjamin Nutter [aut, cre]
Maintainer: Benjamin Nutter <benjamin.nutter@gmail.com>
Diff between labelVector versions 0.1.1 dated 2020-02-17 and 0.1.2 dated 2021-10-08
DESCRIPTION | 9 MD5 | 38 - NAMESPACE | 26 NEWS | 10 R/extract_labelled.R | 80 +- R/is_labelled.R | 60 - R/print.labelled.R | 34 - R/set_label.R | 224 +++---- README.md | 206 +++--- build/vignette.rds |binary inst/doc/labelVector.R | 216 +++---- inst/doc/labelVector.html | 1000 ++++++++++++++++----------------- man/extract_labelled.Rd | 72 +- man/get_label.Rd | 112 +-- man/is_labelled.Rd | 56 - man/print.labelled.Rd | 34 - man/set_label.Rd | 116 +-- tests/testthat/test-extract_labelled.R | 76 +- tests/testthat/test-is_labelled.R | 48 - tests/testthat/test-print.labelled.R | 92 +-- 20 files changed, 1259 insertions(+), 1250 deletions(-)
Title: Weighted Logrank Tests and NPMLE for Interval Censored Data
Description: Functions to fit nonparametric survival curves, plot them, and perform logrank or Wilcoxon type tests [see Fay and Shaw <doi:10.18637/jss.v036.i02>].
Author: Michael P. Fay
Maintainer: Michael P. Fay <mfay@niaid.nih.gov>
Diff between interval versions 1.1-0.7 dated 2020-09-24 and 1.1-0.8 dated 2021-10-08
DESCRIPTION | 10 +++++----- MD5 | 17 +++++++++-------- NEWS | 4 ++++ build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 4 ++-- inst/doc/intervalCensoring.pdf |binary man/icfit.Rd | 2 +- man/ictest.Rd | 2 +- man/interval-package.Rd | 6 +++--- 10 files changed, 25 insertions(+), 20 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-22 1.0.0
Title: Loading a JAGS Module for the Piecewise Exponential Distribution
Description: Load the Just Another Gibbs Sampling (JAGS) module 'pexm'. The module provides the tools to work with the Piecewise Exponential (PE) distribution in a Bayesian model with the corresponding Markov Chain Monte Carlo algorithm (Gibbs Sampling) implemented via JAGS. Details about the module implementation can be found in Mayrink et al. (2020) <arXiv:2004.12359>.
Author: Vinicius Mayrink [aut, cre] (<https://orcid.org/0000-0002-5683-8326>),
Joao Duarte [aut],
Fabio Demarqui [ctb] (<https://orcid.org/0000-0001-9236-1986>)
Maintainer: Vinicius Mayrink <vdinizm@gmail.com>
Diff between pexm versions 1.0.0 dated 2020-07-06 and 1.0.1 dated 2021-10-08
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 4 +++- R/loadpexm.R | 2 +- R/pexm.R | 4 ++-- README.md | 2 +- configure.ac | 12 +++++------- man/loadpexm.Rd | 2 +- man/pexm.Rd | 4 ++-- 9 files changed, 27 insertions(+), 27 deletions(-)
Title: R Binding for the 'Certifiably Optimal RulE ListS (Corels)'
Learner
Description: The 'Certifiably Optimal RulE ListS (Corels)' learner by
Angelino et al described in <arXiv:1704.01701> provides interpretable decision
rules with an optimality guarantee, and is made available to R with this package.
See the file 'AUTHORS' for a list of copyright holders and contributors.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between corels versions 0.0.2 dated 2020-06-05 and 0.0.3 dated 2021-10-08
ChangeLog | 17 +++++++++++++++++ DESCRIPTION | 10 ++++++---- MD5 | 12 ++++++------ README.md | 19 +++++++++++-------- build/partial.rdb |binary configure | 18 +++++++++--------- configure.ac | 9 +++++---- 7 files changed, 54 insertions(+), 31 deletions(-)
Title: PARAFAC Analysis of EEMs from DOM
Description: This is a user-friendly way to run a parallel factor (PARAFAC) analysis (Harshman, 1971) <doi:10.1121/1.1977523> on excitation emission matrix (EEM) data from dissolved organic matter (DOM) samples (Murphy et al., 2013) <doi:10.1039/c3ay41160e>. The analysis includes profound methods for model validation. Some additional functions allow the calculation of absorbance slope parameters and create beautiful plots.
Author: Matthias Pucher [aut, cre],
Daniel Graeber [aut, ctb],
Stefan Preiner [ctb],
Renata Pinto [ctb]
Maintainer: Matthias Pucher <matthias.pucher@wcl.ac.at>
Diff between staRdom versions 1.1.21 dated 2021-04-20 and 1.1.23 dated 2021-10-08
DESCRIPTION | 25 MD5 | 50 - NAMESPACE | 2 R/absorption_functions.R | 10 R/data_check.R | 2 R/eem_importers.R | 1 R/parafac_functions.R | 24 R/parafac_plot_functions.R | 66 + R/plot_functions.R | 20 README | 7 build/partial.rdb |binary build/vignette.rds |binary data/pf_models.rda |binary data/sh.rda |binary inst/EEM_simple_analysis.Rmd | 4 inst/doc/Basic_analysis_of_DOM_samples.Rmd | 10 inst/doc/Basic_analysis_of_DOM_samples.html | 1016 +++++++++------------- inst/doc/PARAFAC_analysis_of_EEM.R | 12 inst/doc/PARAFAC_analysis_of_EEM.Rmd | 20 inst/doc/PARAFAC_analysis_of_EEM.html | 1291 +++++++++++----------------- man/eempf_plot_comps.Rd | 2 man/eempf_residuals_plot.Rd | 2 man/ggeem.Rd | 2 man/splithalf.Rd | 3 vignettes/Basic_analysis_of_DOM_samples.Rmd | 10 vignettes/PARAFAC_analysis_of_EEM.Rmd | 20 26 files changed, 1138 insertions(+), 1461 deletions(-)
Title: Flexible Tool for Bias Detection, Visualization, and Mitigation
Description: Measure fairness metrics in one place for many models. Check how big is model's bias towards different races, sex, nationalities etc. Use measures such as Statistical Parity, Equal odds to detect the discrimination against unprivileged groups. Visualize the bias using heatmap, radar plot, biplot, bar chart (and more!). There are various pre-processing and post-processing bias mitigation algorithms implemented. Package also supports calculating fairness metrics for regression models. Find more details in (Wiśniewski, Biecek (2021)) <arXiv:2104.00507>.
Author: Jakub Wiśniewski [aut, cre],
Przemysław Biecek [aut] (<https://orcid.org/0000-0001-8423-1823>)
Maintainer: Jakub Wiśniewski <jakwisn@gmail.com>
Diff between fairmodels versions 1.1.0 dated 2021-05-31 and 1.2.0 dated 2021-10-08
DESCRIPTION | 11 MD5 | 242 +++--- NAMESPACE | 12 NEWS.md | 134 ++- R/all_cutoffs.R | 105 +- R/calculate_group_fairness_metrics.R | 44 - R/ceteris_paribus_cutoff.R | 141 ++-- R/choose_metric.R | 64 - R/confusion_matrix.R | 14 R/disparate_impact_remover.R | 122 +-- R/expand_fairness_object.R | 53 - R/fairness_check.R | 254 +++---- R/fairness_check_regression.R | 101 +- R/fairness_heatmap.R | 77 +- R/fairness_pca.R | 74 -- R/fairness_radar.R | 90 +- R/group_matrices.R | 44 - R/group_metric.R | 108 +-- R/group_model_performance.R | 40 - R/helper_functions.R | 340 ++++----- R/metric_scores.R | 66 + R/performance_and_fairness.R | 98 +- R/plot_all_cutoffs.R | 47 - R/plot_ceteris_paribus_cutoff.R | 158 ++-- R/plot_chosen_metric.R | 43 - R/plot_density.R | 69 - R/plot_fairmodels.R | 93 +- R/plot_fairness_heatmap.R | 290 ++++---- R/plot_fairness_object.R | 150 ++-- R/plot_fairness_pca.R | 127 +-- R/plot_fairness_radar.R | 120 +-- R/plot_fairness_regression_object.R | 303 ++++---- R/plot_group_metric.R | 99 +- R/plot_metric_scores.R | 93 +- R/plot_performance_and_fairness.R | 75 +- R/plot_stacked_metrics.R | 45 - R/pre_process_data.R | 36 - R/print.R | 666 ++++++++++--------- R/regression_metrics.R | 68 + R/resample.R | 255 +++---- R/reweight.R | 66 - R/roc_pivot.R | 65 - R/stack_metrics.R | 61 - README.md | 289 ++++---- build/vignette.rds |binary inst/doc/Advanced_tutorial.R | 30 inst/doc/Advanced_tutorial.Rmd | 51 + inst/doc/Advanced_tutorial.html | 140 +++ inst/doc/Basic_tutorial.Rmd | 13 inst/doc/Basic_tutorial.html | 109 ++- man/all_cutoffs.Rd | 34 man/ceteris_paribus_cutoff.Rd | 36 - man/choose_metric.Rd | 30 man/confusion_matrx.Rd | 3 man/disparate_impact_remover.Rd | 58 - man/expand_fairness_object.Rd | 30 man/fairness_check.Rd | 44 - man/fairness_check_regression.Rd | 19 man/fairness_heatmap.Rd | 43 - man/fairness_pca.Rd | 44 - man/fairness_radar.Rd | 51 - man/group_matrices.Rd | 24 man/group_metric.Rd | 29 man/instructions |only man/metric_scores.Rd | 33 man/performance_and_fairness.Rd | 41 - man/plot_all_cutoffs.Rd | 34 man/plot_ceteris_paribus_cutoff.Rd | 35 man/plot_chosen_metric.Rd | 30 man/plot_density.Rd | 11 man/plot_fairmodels.Rd | 23 man/plot_fairness_heatmap.Rd | 46 - man/plot_fairness_object.Rd | 43 - man/plot_fairness_pca.Rd | 43 - man/plot_fairness_radar.Rd | 44 - man/plot_fairness_regression_object.Rd | 14 man/plot_group_metric.Rd | 30 man/plot_metric_scores.Rd | 34 man/plot_performance_and_fairness.Rd | 41 - man/plot_stacked_barplot.Rd | 29 man/plot_stacked_metrics.Rd | 28 man/pre_process_data.Rd | 9 man/print_all_cutoffs.Rd | 39 - man/print_ceteris_paribus_cutoff.Rd | 33 man/print_chosen_metric.Rd | 31 man/print_fairness_heatmap.Rd | 47 - man/print_fairness_object.Rd | 70 + man/print_fairness_pca.Rd | 43 - man/print_fairness_radar.Rd | 32 man/print_fairness_regression_object.Rd | 15 man/print_group_metric.Rd | 31 man/print_metric_scores.Rd | 33 man/print_performance_and_fairness.Rd | 42 - man/print_stacked_metrics.Rd | 31 man/resample.Rd | 71 +- man/reweight.Rd | 17 man/roc_pivot.Rd | 23 tests/testthat/helper_objects.R | 44 - tests/testthat/test_all_cutoffs.R | 22 tests/testthat/test_ceteris_paribus_with_plot.R | 6 tests/testthat/test_choose_metric.R | 3 tests/testthat/test_confusion_matrices_computation.R | 30 tests/testthat/test_disparate_impact_remover.R | 26 tests/testthat/test_expand_fairness_object.R | 23 tests/testthat/test_fairness_check.R | 155 ++-- tests/testthat/test_fairness_check_regression.R | 78 +- tests/testthat/test_fairness_object.R | 99 +- tests/testthat/test_fairness_radar_and_plot.R | 24 tests/testthat/test_group_metric.R | 10 tests/testthat/test_heatmap.R | 10 tests/testthat/test_helper_functions.R | 30 tests/testthat/test_metric_scores_with_plot.R | 17 tests/testthat/test_pca_fairness_with_plot.R | 16 tests/testthat/test_performance_and_fairness.R | 18 tests/testthat/test_plot_density.R | 88 +- tests/testthat/test_plot_fairmodels.R | 40 - tests/testthat/test_resample.R | 28 tests/testthat/test_reweight.R | 39 - tests/testthat/test_roc_pivot.R | 16 tests/testthat/test_stack_metrics_and_plot.R | 10 vignettes/Advanced_tutorial.Rmd | 51 + vignettes/Basic_tutorial.Rmd | 13 vignettes/references.bib |only 123 files changed, 4397 insertions(+), 3865 deletions(-)
Title: Softening Splits in Decision Trees
Description: Allows to produce and use classification trees with soft (probability) splits,
as described in: Dvořák, J. (2019), <doi:10.1007/s00180-019-00867-1>.
Author: Jakub Dvorak
Maintainer: Jakub Dvorak <JakubDvorak@email.cz>
Diff between SplitSoftening versions 2.0-1 dated 2020-03-10 and 2.1-0 dated 2021-10-08
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/SplitSoftening.R | 2 +- R/convenience.R | 16 ++++++++++++++-- R/sft_optim.R | 12 ++++++++---- man/SplitSoftening.Rd | 3 +-- man/soften.Rd | 6 +++++- man/softening.optimized.Rd | 17 ++++++++++++++--- 8 files changed, 54 insertions(+), 24 deletions(-)
More information about SplitSoftening at CRAN
Permanent link
Title: Create Ternary Plots
Description: Plots ternary diagrams (simplex plots / Gibbs triangles) using the
standard graphics functions.
An alternative to 'ggtern', which uses the 'ggplot2' family of plotting
functions.
Includes a 'Shiny' user interface for point-and-click plotting.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Lilian Sanselme [ctb]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Ternary versions 1.2.2 dated 2021-05-12 and 1.2.3 dated 2021-10-08
Ternary-1.2.2/Ternary/tests/figs |only Ternary-1.2.3/Ternary/DESCRIPTION | 19 - Ternary-1.2.3/Ternary/MD5 | 73 ++--- Ternary-1.2.3/Ternary/NEWS.md | 5 Ternary-1.2.3/Ternary/build/partial.rdb |binary Ternary-1.2.3/Ternary/build/vignette.rds |binary Ternary-1.2.3/Ternary/inst/TernaryApp/app.R | 20 - Ternary-1.2.3/Ternary/inst/doc/Ternary.html | 221 ---------------- Ternary-1.2.3/Ternary/inst/doc/interpolation.html | 217 --------------- Ternary-1.2.3/Ternary/tests/testthat/Rplots.pdf |binary Ternary-1.2.3/Ternary/tests/testthat/_snaps |only Ternary-1.2.3/Ternary/tests/testthat/test-Contours.R | 2 Ternary-1.2.3/Ternary/tests/testthat/test-Coordinates.R | 4 Ternary-1.2.3/Ternary/tests/testthat/test-axis.rotate.R | 2 Ternary-1.2.3/Ternary/tests/testthat/test-ternary.R | 2 15 files changed, 88 insertions(+), 477 deletions(-)
Title: Tools for Statistical Disclosure Control in Research Data
Centers
Description: Tools for researchers to explicitly show that their results
comply to rules for statistical disclosure control imposed by research
data centers. These tools help in checking descriptive statistics and
models and in calculating extreme values that are not individual data.
Also included is a simple function to create log files. The methods
used here are described in the "Guidelines for the checking of output
based on microdata research" by Bond, Brandt, and de Wolf (2015)
<https://ec.europa.eu/eurostat/cros/system/files/dwb_standalone-document_output-checking-guidelines.pdf>.
Author: Matthias Gomolka [aut, cre],
Tim Becker [aut],
Pantelis Karapanagiotis [ctb]
Maintainer: Matthias Gomolka <matthias.gomolka@posteo.de>
Diff between sdcLog versions 0.3.0 dated 2021-07-22 and 0.4.0 dated 2021-10-08
DESCRIPTION | 14 MD5 | 116 - NAMESPACE | 5 NEWS.md | 118 + R/arguments.R | 43 R/check_distinct_ids.R | 50 R/check_dominance.R | 100 + R/datasets.R | 80 - R/is_dummy.R | 57 R/print_methods.R | 282 ++-- R/sdc_descriptives.R | 288 ++-- R/sdc_extreme.R | 298 ++-- R/sdc_log.R | 256 +-- R/sdc_model.R | 414 +++--- R/status_messages.R | 50 R/subset_zero.R |only R/warn_distinct_ids.R | 57 README.md | 37 build/sdcLog.pdf |only build/vignette.rds |binary data/sdc_descriptives_DT.rda |binary inst/WORDLIST | 20 inst/doc/FAQ.R | 32 inst/doc/FAQ.Rmd | 90 - inst/doc/FAQ.html | 346 ++--- inst/doc/intro.R | 260 +-- inst/doc/intro.Rmd | 930 ++++++------- inst/doc/intro.html | 1124 ++++++++-------- inst/doc/options.R | 130 - inst/doc/options.Rmd | 324 ++-- inst/doc/options.html | 562 ++++---- man/common_arguments.Rd | 64 man/sdc_descriptives.Rd | 166 +- man/sdc_descriptives_DT.Rd | 50 man/sdc_log.Rd | 84 - man/sdc_min_max.Rd | 92 - man/sdc_min_max_DT.Rd | 50 man/sdc_model.Rd | 72 - man/sdc_model_DT.Rd | 48 tests/nobs_/compare-nobsdes5.R | 192 +- tests/nobs_/compare-nobsreg5.R | 170 +- tests/nobs_/nobsdes5xmpl.html | 1096 ++++++++-------- tests/nobs_/nobsreg5xmpl.html | 2194 ++++++++++++++++----------------- tests/spelling.R | 10 tests/testthat.R | 8 tests/testthat/helper-options.R | 18 tests/testthat/script_1.R | 18 tests/testthat/script_2.R | 18 tests/testthat/script_error.R | 2 tests/testthat/script_main.R | 16 tests/testthat/test-is_dummy.R | 94 - tests/testthat/test-print_methods.R | 812 ++++++------ tests/testthat/test-sdc_descriptives.R | 802 ++++++++---- tests/testthat/test-sdc_extreme.R | 579 ++++---- tests/testthat/test-sdc_log.R | 328 ++-- tests/testthat/test-sdc_model.R | 929 ++++++------- tests/testthat/test_log.txt | 48 vignettes/FAQ.Rmd | 90 - vignettes/intro.Rmd | 930 ++++++------- vignettes/options.Rmd | 324 ++-- 60 files changed, 7902 insertions(+), 7485 deletions(-)
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles,
random deviates and densities.
Author: Alan Genz [aut],
Frank Bretz [aut],
Tetsuhisa Miwa [aut],
Xuefei Mi [aut],
Friedrich Leisch [ctb],
Fabian Scheipl [ctb],
Bjoern Bornkamp [ctb] (<https://orcid.org/0000-0002-6294-8185>),
Martin Maechler [ctb] (<https://orcid.org/0000-0002-8685-9910>),
Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mvtnorm versions 1.1-2 dated 2021-06-07 and 1.1-3 dated 2021-10-08
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- build/vignette.rds |binary inst/NEWS | 5 +++++ inst/doc/MVT_Rnews.pdf |binary man/algorithms.Rd | 8 ++++---- src/miwa.h | 3 +-- tests/regtest-TVPACK.R | 2 +- tests/regtest-TVPACK.Rout.save | 10 +++++----- 9 files changed, 28 insertions(+), 24 deletions(-)
More information about digitalDLSorteR at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-28 0.6.0
2020-03-24 0.5.0
2018-12-11 0.4.0
2018-03-19 0.3.0
2018-03-12 0.2.0
2017-08-23 0.1.0
Title: Multiple Empirical Likelihood Tests
Description: Multiple hypothesis testing via empirical likelihood in general
block designs. It provides asymptotic generalized family-wise
error rate control.
Author: Eunseop Kim [aut, cre]
Maintainer: Eunseop Kim <kim.7302@osu.edu>
Diff between melt versions 1.0.0 dated 2021-09-29 and 1.0.1 dated 2021-10-08
DESCRIPTION | 8 +++---- MD5 | 18 ++++++++-------- NEWS.md | 4 +++ R/el_pairwise.R | 2 - build/partial.rdb |binary man/el_pairwise.Rd | 2 - src/eigen_config.h | 1 src/utils.cpp | 54 ++++++++++++++++++++++++------------------------- src/utils_pairwise.cpp | 28 +++++++++++++++++++++++++ src/utils_pairwise.h | 11 ++++++++- 10 files changed, 84 insertions(+), 44 deletions(-)
Title: L1 Constrained Estimation aka `lasso'
Description: Routines and documentation for solving regression problems
while imposing an L1 constraint on the estimates, based on
the algorithm of Osborne et al. (1998).
Author: Justin Lokhorst, Bill Venables and Berwin Turlach;
port to R, tests etc: Martin Maechler <maechler@stat.math.ethz.ch>
Maintainer: Berwin Turlach <Berwin.Turlach@gmail.com>
Diff between lasso2 versions 1.2-21.1 dated 2020-09-22 and 1.2-22 dated 2021-10-08
ChangeLog | 8 ++++++++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- build/vignette.rds |binary data/Prostate.rda |binary inst/doc/Manual-vignette.pdf |binary src/lasso.c | 10 +++++----- src/lasso.h | 18 ++++++++---------- 8 files changed, 32 insertions(+), 26 deletions(-)
Title: Infinite Mixtures of Infinite Factor Analysers and Related
Models
Description: Provides flexible Bayesian estimation of Infinite Mixtures of Infinite Factor Analysers and related models, for nonparametrically clustering high-dimensional data, introduced by Murphy et al. (2020) <doi:10.1214/19-BA1179>. The IMIFA model conducts Bayesian nonparametric model-based clustering with factor analytic covariance structures without recourse to model selection criteria to choose the number of clusters or cluster-specific latent factors, mostly via efficient Gibbs updates. Model-specific diagnostic tools are also provided, as well as many options for plotting results, conducting posterior inference on parameters of interest, posterior predictive checking, and quantifying uncertainty.
Author: Keefe Murphy [aut, cre] (<https://orcid.org/0000-0002-7709-3159>),
Cinzia Viroli [ctb] (<https://orcid.org/0000-0002-3278-5266>),
Isobel Claire Gormley [ctb] (<https://orcid.org/0000-0001-7713-681X>)
Maintainer: Keefe Murphy <keefe.murphy@mu.ie>
Diff between IMIFA versions 2.1.6 dated 2021-05-24 and 2.1.7 dated 2021-10-08
DESCRIPTION | 10 - MD5 | 63 ++++++------ NAMESPACE | 2 R/Diagnostics.R | 13 +- R/FullConditionals.R | 253 +++++++++++++++++++++++++++++++++++++------------- R/Gibbs_FA.R | 9 - R/Gibbs_IFA.R | 22 ++-- R/Gibbs_IMFA.R | 12 +- R/Gibbs_IMIFA.R | 38 ++++--- R/Gibbs_MFA.R | 21 ++-- R/Gibbs_MIFA.R | 37 ++++--- R/Gibbs_OMFA.R | 12 +- R/Gibbs_OMIFA.R | 34 ++++-- R/IMIFA.R | 6 - R/MainFunction.R | 16 +-- R/PlottingFunctions.R | 6 - R/SimulateData.R | 18 +-- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 13 +- inst/NEWS.md | 25 ++++ inst/doc/IMIFA.R | 4 inst/doc/IMIFA.Rmd | 6 - inst/doc/IMIFA.html | 90 ++++++++--------- man/IMIFA-package.Rd | 4 man/MGP_check.Rd | 24 +++- man/Zsimilarity.Rd | 2 man/ltrgamma.Rd |only man/mcmc_IMIFA.Rd | 2 man/mgpControl.Rd | 12 +- man/post_conf_mat.Rd | 4 vignettes/IMIFA.Rmd | 6 - 33 files changed, 493 insertions(+), 273 deletions(-)
Title: Insightful Research Tools
Description: Insightful Research Tools is a collection of signal processing,
image processing, and time series modeling routines written in the C
language for speed and efficency. The routines were originally developed at
Insightful for use in S-PLUS.
Author: William Constantine [aut],
Stephen Kaluzny [aut, cre]
Maintainer: Stephen Kaluzny <spkaluzny@gmail.com>
Diff between ifultools versions 2.0-22 dated 2020-12-07 and 2.0-23 dated 2021-10-08
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/Makevars | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Access the 'Geographic Name Resolution Service'
Description: Provides tools for interacting with the 'geographic name resolution service' ('GNRS') API <https://github.com/ojalaquellueva/gnrs> and associated functionality. The 'GNRS' is a batch application for resolving & standardizing political division names against standard name in the geonames database <http://www.geonames.org/>. The 'GNRS' resolves political division names at three levels: country, state/province and county/parish. Resolution is performed in a series of steps, beginning with direct matching to standard names, followed by direct matching to alternate names in different languages, followed by direct matching to standard codes (such as ISO and FIPS codes). If direct matching fails, the 'GNRS' attempts to match to standard and then alternate names using fuzzy matching, but does not perform fuzzing matching of political division codes. The 'GNRS' works down the political division hierarchy, stopping at the current level if all matches fail. In other words, if a country cannot be matched, the 'GNRS' does not attempt to match state or county.
Author: Brad Boyle [aut],
Brian Maitner [aut, cre]
Maintainer: Brian Maitner <bmaitner@gmail.com>
Diff between GNRS versions 0.3.2 dated 2021-10-05 and 0.3.3 dated 2021-10-08
DESCRIPTION | 6 - MD5 | 32 ++++----- NEWS | 8 ++ inst/doc/GNRS.R | 26 ++++++- inst/doc/GNRS.Rmd | 41 ++++++++++-- inst/doc/GNRS.html | 97 +++++++++++++++++------------ tests/testthat/test-gnrs.R | 4 + tests/testthat/test-gnrs_data_dictionary.R | 1 tests/testthat/test-gnrs_error_handling.R | 3 tests/testthat/test-gnrs_get_counties.R | 2 tests/testthat/test-gnrs_get_countries.R | 2 tests/testthat/test-gnrs_get_states.R | 4 + tests/testthat/test-gnrs_metadata.R | 2 tests/testthat/test-gnrs_super_simple.R | 8 ++ tests/testthat/test-gnrs_template.R | 2 tests/testthat/test-gnrs_version.R | 2 vignettes/GNRS.Rmd | 41 ++++++++++-- 17 files changed, 207 insertions(+), 74 deletions(-)
More information about fwildclusterboot at CRAN
Permanent link
Title: IRT Equating Methods
Description: Computation of direct, chain and average (bisector) equating coefficients with
standard errors using Item Response Theory (IRT) methods for dichotomous items
(Battauz (2013) <doi:10.1007/s11336-012-9316-y>,
Battauz (2015) <doi:10.18637/jss.v068.i07>).
Test scoring can be performed by true score equating and observed score equating methods.
DIF detection can be performed using a Wald-type test
(Battauz (2018) <doi:10.1007/s10260-018-00442-w>).
Author: Michela Battauz
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between equateIRT versions 2.2.0 dated 2021-05-31 and 2.2.1 dated 2021-10-08
equateIRT-2.2.0/equateIRT/man/equateIRT-internal.Rd |only equateIRT-2.2.1/equateIRT/DESCRIPTION | 6 equateIRT-2.2.1/equateIRT/MD5 | 15 - equateIRT-2.2.1/equateIRT/R/functions.r | 2 equateIRT-2.2.1/equateIRT/build/vignette.rds |binary equateIRT-2.2.1/equateIRT/inst/NEWS | 4 equateIRT-2.2.1/equateIRT/inst/doc/equateIRT_paper.pdf |binary equateIRT-2.2.1/equateIRT/inst/doc/equateIRT_tutorial.html | 115 +++---------- equateIRT-2.2.1/equateIRT/man/equateIRT-package.Rd | 4 9 files changed, 45 insertions(+), 101 deletions(-)
Title: Send Email Messages
Description: A light, simple tool for sending emails with minimal dependencies.
Author: Andrew B. Collier [aut, cre, cph],
Matt Dennis [ctb],
Antoine Bichat [ctb] (<https://orcid.org/0000-0001-6599-7081>),
Daniel Fahey [ctb],
Johann R. Kleinbub [ctb],
Panagiotis Moulos [ctb]
Maintainer: Andrew B. Collier <andrew@fathomdata.dev>
Diff between emayili versions 0.5.0 dated 2021-09-17 and 0.6.1 dated 2021-10-08
emayili-0.5.0/emayili/R/message.R |only emayili-0.5.0/emayili/R/subject.R |only emayili-0.5.0/emayili/man/append.Rd |only emayili-0.5.0/emayili/man/bcc.Rd |only emayili-0.5.0/emayili/man/cc.Rd |only emayili-0.5.0/emayili/man/from.Rd |only emayili-0.5.0/emayili/man/header.Rd |only emayili-0.5.0/emayili/man/reply.Rd |only emayili-0.5.0/emayili/man/sender.Rd |only emayili-0.5.0/emayili/man/to.Rd |only emayili-0.6.1/emayili/DESCRIPTION | 19 emayili-0.6.1/emayili/MD5 | 90 +-- emayili-0.6.1/emayili/NAMESPACE | 17 emayili-0.6.1/emayili/NEWS.md | 44 + emayili-0.6.1/emayili/R/address.R | 2 emayili-0.6.1/emayili/R/attachment.R | 4 emayili-0.6.1/emayili/R/body.R | 15 emayili-0.6.1/emayili/R/emayili.R | 12 emayili-0.6.1/emayili/R/envelope.R | 113 ++-- emayili-0.6.1/emayili/R/header-mail.R |only emayili-0.6.1/emayili/R/header-mime.R |only emayili-0.6.1/emayili/R/header-precedence.R |only emayili-0.6.1/emayili/R/header.R |only emayili-0.6.1/emayili/R/mime.R | 140 ++++- emayili-0.6.1/emayili/R/options.R |only emayili-0.6.1/emayili/R/parties.R | 134 ----- emayili-0.6.1/emayili/R/render.R | 343 +++++++++----- emayili-0.6.1/emayili/R/server.R | 27 - emayili-0.6.1/emayili/R/utils.R | 89 +++ emayili-0.6.1/emayili/README.md | 119 ++++ emayili-0.6.1/emayili/inst/WORDLIST |only emayili-0.6.1/emayili/man/addresses.Rd |only emayili-0.6.1/emayili/man/as.character.envelope.Rd | 4 emayili-0.6.1/emayili/man/as.character.header.Rd |only emayili-0.6.1/emayili/man/envelope.Rd | 30 - emayili-0.6.1/emayili/man/figures/emayili-github-card.png |binary emayili-0.6.1/emayili/man/html.Rd | 9 emayili-0.6.1/emayili/man/precedence.Rd |only emayili-0.6.1/emayili/man/print.envelope.Rd | 2 emayili-0.6.1/emayili/man/render.Rd | 49 +- emayili-0.6.1/emayili/man/server.Rd | 16 emayili-0.6.1/emayili/man/subject.Rd | 2 emayili-0.6.1/emayili/tests/testthat.R | 1 emayili-0.6.1/emayili/tests/testthat/setup-files.R | 40 + emayili-0.6.1/emayili/tests/testthat/teardown-files.R | 2 emayili-0.6.1/emayili/tests/testthat/test-attachment.R | 16 emayili-0.6.1/emayili/tests/testthat/test-body.R | 28 - emayili-0.6.1/emayili/tests/testthat/test-compliant.R | 5 emayili-0.6.1/emayili/tests/testthat/test-envelope.R | 23 emayili-0.6.1/emayili/tests/testthat/test-header.R |only emayili-0.6.1/emayili/tests/testthat/test-message.R | 2 emayili-0.6.1/emayili/tests/testthat/test-mime.R | 77 ++- emayili-0.6.1/emayili/tests/testthat/test-parties.R | 15 emayili-0.6.1/emayili/tests/testthat/test-precedence.R |only emayili-0.6.1/emayili/tests/testthat/test-server.R | 18 emayili-0.6.1/emayili/tests/testthat/test-subject.R | 15 emayili-0.6.1/emayili/tests/testthat/test-utils.R |only 57 files changed, 1017 insertions(+), 505 deletions(-)
Title: Common Functionality for the 'dynverse' Packages
Description: Provides common functionality for the 'dynverse' packages.
'dynverse' is created to support the development, execution, and benchmarking of trajectory inference methods.
For more information, check out <https://dynverse.org>.
Author: Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>,
rcannood),
Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between dynutils versions 1.0.8 dated 2021-09-20 and 1.0.9 dated 2021-10-08
DESCRIPTION | 10 ++++----- MD5 | 24 +++++++++++------------ NAMESPACE | 2 + NEWS.md | 8 ++++++- R/h5.R | 45 ++++++++++++++++++++++++++------------------ R/news.R | 4 +-- R/sparse_matrix.R | 1 inst/doc/functionality.R | 3 -- inst/doc/functionality.Rmd | 3 -- inst/doc/functionality.html | 8 +++---- man/is_sparse.Rd | 1 tests/testthat/test-news.R | 4 +-- vignettes/functionality.Rmd | 3 -- 13 files changed, 66 insertions(+), 50 deletions(-)
Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general independence
problem including two-sample, K-sample (non-parametric ANOVA),
correlation, censored, ordered and multivariate problems described
in <doi:10.18637/jss.v028.i08>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>),
Henric Winell [aut] (<https://orcid.org/0000-0001-7995-3047>),
Kurt Hornik [aut] (<https://orcid.org/0000-0003-4198-9911>),
Mark A. van de Wiel [aut] (<https://orcid.org/0000-0003-4780-8472>),
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between coin versions 1.4-1 dated 2021-02-08 and 1.4-2 dated 2021-10-08
DESCRIPTION | 18 +++--- MD5 | 40 +++++++------- R/MTP.R | 49 +++++++++-------- R/helpers.R | 8 +- R/zAccess.R | 22 ++++---- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 90 ++++++++++++++++++++++++++++++++- inst/doc/Implementation.pdf |binary inst/doc/LegoCondInf.pdf |binary inst/doc/MAXtest.pdf |binary inst/doc/coin.pdf |binary man/IndependenceTest-class.Rd | 2 man/IndependenceTestStatistic-class.Rd | 2 man/NullDistribution-class.Rd | 2 man/SurvivalTests.Rd | 1 src/Helpers.c | 15 +---- tests/bugfixes.R | 15 +++-- tests/bugfixes.Rout.save | 25 +++++---- vignettes/coin.bib | 4 - vignettes/references.bib | 2 21 files changed, 193 insertions(+), 102 deletions(-)
Title: Cholesky Decomposition of the Wishart Distribution
Description: Sampling from the Cholesky factorization of a Wishart random
variable, sampling from the inverse Wishart distribution, sampling from
the Cholesky factorization of an inverse Wishart random variable, sampling
from the pseudo Wishart distribution, sampling from the generalized
inverse Wishart distribution, computing densities for the Wishart
and inverse Wishart distributions, and computing the multivariate gamma
and digamma functions. Provides a header file so the C functions can be
called directly from other programs.
Author: Geoffrey Thompson [aut, cre] (<https://orcid.org/0000-0003-2436-8822>),
R Core Team [ctb]
Maintainer: Geoffrey Thompson <gzthompson@gmail.com>
Diff between CholWishart versions 1.1.0 dated 2019-11-14 and 1.1.2 dated 2021-10-08
DESCRIPTION | 13 - MD5 | 44 ++-- NEWS.md | 10 + R/CholWishart-package.r | 17 + R/densities.R | 116 +++++++----- R/gammas.R | 56 +++-- R/wishart.R | 277 +++++++++++++++-------------- README.md | 154 +++++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/wishart.html | 416 ++++++++++++++------------------------------ man/CholWishart.Rd | 18 + man/dWishart.Rd | 30 +-- man/lmvgamma.Rd | 16 + man/mvdigamma.Rd | 13 - man/rCholWishart.Rd | 22 +- man/rGenInvWishart.Rd | 75 ++++--- man/rInvCholWishart.Rd | 37 ++- man/rInvWishart.Rd | 36 ++- man/rPseudoWishart.Rd | 36 ++- src/rCholWishart.c | 45 ++-- tests/testthat/testinput.R | 196 ++++++++++---------- tests/testthat/testoutput.R | 95 +++++----- 23 files changed, 868 insertions(+), 854 deletions(-)
Title: Vehicular Emissions Inventories
Description: Elaboration of vehicular emissions inventories,
consisting in four stages, pre-processing activity data, preparing
emissions factors, estimating the emissions and post-processing of emissions
in maps and databases. More details in Ibarra-Espinosa et al (2018) <doi:10.5194/gmd-11-2209-2018>.
Before using VEIN you need to know the vehicular composition of your study area, in other words,
the combination of of type of vehicles, size and fuel of the fleet. Then, it is recommended to
start with the project to download a template to create a structure of directories and scripts.
Author: Sergio Ibarra-Espinosa [aut, cre]
(<https://orcid.org/0000-0002-3162-1905>),
Joao Bazzo [ctb] (<https://orcid.org/0000-0003-4536-5006>)
Maintainer: Sergio Ibarra-Espinosa <zergioibarra@gmail.com>
Diff between vein versions 0.9.3 dated 2021-06-30 and 0.9.4 dated 2021-10-08
vein-0.9.3/vein/man/ef_emfac.Rd |only vein-0.9.4/vein/DESCRIPTION | 30 +- vein-0.9.4/vein/MD5 | 128 +++++++----- vein-0.9.4/vein/NAMESPACE | 17 + vein-0.9.4/vein/NEWS.md | 26 +- vein-0.9.4/vein/R/EmissionFactors.R | 131 ++++++++++-- vein-0.9.4/vein/R/Emissions.R | 112 ++++++++-- vein-0.9.4/vein/R/EmissionsArray.R | 7 vein-0.9.4/vein/R/GriddedEmissionsArray.R | 2 vein-0.9.4/vein/R/Speed.R | 117 +++++++++-- vein-0.9.4/vein/R/Vehicles.R | 106 ++++++++- vein-0.9.4/vein/R/add_lkm.R | 37 +++ vein-0.9.4/vein/R/colplot.R | 20 + vein-0.9.4/vein/R/decoder.R |only vein-0.9.4/vein/R/ef_eea.R |only vein-0.9.4/vein/R/ef_emfac.R | 125 +---------- vein-0.9.4/vein/R/ef_hdv_speed.R | 67 ------ vein-0.9.4/vein/R/ef_ldv_speed.R | 64 +----- vein-0.9.4/vein/R/emis_chem2.R | 189 +++++++++++------ vein-0.9.4/vein/R/emis_grid.R | 28 +- vein-0.9.4/vein/R/fuel_corr.R | 19 + vein-0.9.4/vein/R/get_project.R | 61 +++++ vein-0.9.4/vein/R/moves_ef.R |only vein-0.9.4/vein/R/moves_rpd.R |only vein-0.9.4/vein/R/moves_rpdy.R |only vein-0.9.4/vein/R/moves_rpdy_meta.R |only vein-0.9.4/vein/R/moves_rpdy_source.R |only vein-0.9.4/vein/R/moves_rpsy_meta.R |only vein-0.9.4/vein/R/moves_rpsy_source.R |only vein-0.9.4/vein/R/moves_speed.R |only vein-0.9.4/vein/R/netspeed.R | 68 +++--- vein-0.9.4/vein/R/speciate.R | 191 +++++++++++++++++- vein-0.9.4/vein/R/sysdata.rda |binary vein-0.9.4/vein/R/zzz.R | 4 vein-0.9.4/vein/data/decoder.rda |only vein-0.9.4/vein/demo/VEIN.R | 25 +- vein-0.9.4/vein/inst/doc/basics.html | 5 vein-0.9.4/vein/man/EmissionFactors.Rd | 40 +++ vein-0.9.4/vein/man/Emissions.Rd | 44 +++- vein-0.9.4/vein/man/EmissionsArray.Rd | 4 vein-0.9.4/vein/man/Speed.Rd | 53 ++++ vein-0.9.4/vein/man/Vehicles.Rd | 37 +++ vein-0.9.4/vein/man/add_lkm.Rd | 5 vein-0.9.4/vein/man/add_miles.Rd |only vein-0.9.4/vein/man/decoder.Rd |only vein-0.9.4/vein/man/ef_eea.Rd |only vein-0.9.4/vein/man/ef_hdv_speed.Rd | 42 --- vein-0.9.4/vein/man/ef_ldv_speed.Rd | 46 ---- vein-0.9.4/vein/man/emis_chem2.Rd | 68 ++++++ vein-0.9.4/vein/man/emis_grid.Rd | 3 vein-0.9.4/vein/man/figures/unnamed-chunk-10-1.png |only vein-0.9.4/vein/man/figures/unnamed-chunk-3-1.png |only vein-0.9.4/vein/man/figures/unnamed-chunk-4-1.png |only vein-0.9.4/vein/man/figures/unnamed-chunk-5-1.png |only vein-0.9.4/vein/man/figures/unnamed-chunk-6-1.png |only vein-0.9.4/vein/man/figures/unnamed-chunk-7-1.png |only vein-0.9.4/vein/man/figures/unnamed-chunk-9-1.png |only vein-0.9.4/vein/man/get_project.Rd | 13 - vein-0.9.4/vein/man/moves_ef.Rd |only vein-0.9.4/vein/man/moves_rpd.Rd |only vein-0.9.4/vein/man/moves_rpdy.Rd |only vein-0.9.4/vein/man/moves_rpdy_meta.Rd |only vein-0.9.4/vein/man/moves_rpdy_sf.Rd |only vein-0.9.4/vein/man/moves_rpsy_meta.Rd |only vein-0.9.4/vein/man/moves_rpsy_sf.Rd |only vein-0.9.4/vein/man/moves_speed.Rd |only vein-0.9.4/vein/man/netspeed.Rd | 40 ++- vein-0.9.4/vein/man/speciate.Rd | 34 ++- vein-0.9.4/vein/man/vein-deprecated.Rd | 33 ++- vein-0.9.4/vein/man/vein-package.Rd | 7 vein-0.9.4/vein/tests/testthat/Rplots.pdf |binary vein-0.9.4/vein/tests/testthat/test-EmissionFactors.R | 26 +- vein-0.9.4/vein/tests/testthat/test-Emissions.R | 10 vein-0.9.4/vein/tests/testthat/test-Vehicles.R | 6 vein-0.9.4/vein/tests/testthat/test-ef_hdv_speed.R | 56 ----- vein-0.9.4/vein/tests/testthat/test-fuel_corr.R | 6 vein-0.9.4/vein/tests/testthat/test-netspeed.R | 2 vein-0.9.4/vein/tests/testthat/test-speciate.R | 23 ++ vein-0.9.4/vein/tests/testthat/test-speed.R | 10 vein-0.9.4/vein/tests/testthat/test-split_emis.R | 7 80 files changed, 1493 insertions(+), 701 deletions(-)
Title: Bhavcopy and Live Market Data from National Stock Exchange (NSE)
India for Equities and Equity Derivatives (F&O)
Description: Download Historical Bhavcopy and get Live Market data from NSE India of Equities and Derivatives(F&O) segment. Data source <https://www.nseindia.com/>.
Author: Nandan Patil [cre, aut]
Maintainer: Nandan Patil <tryanother609@gmail.com>
Diff between nser versions 1.3.2 dated 2021-09-16 and 1.3.3 dated 2021-10-08
nser-1.3.2/nser/vignettes/Readme.txt |only nser-1.3.3/nser/DESCRIPTION | 11 +-- nser-1.3.3/nser/MD5 | 30 +++++--- nser-1.3.3/nser/NAMESPACE | 8 ++ nser-1.3.3/nser/R/dailydata.R |only nser-1.3.3/nser/R/daytoweek.R |only nser-1.3.3/nser/R/utils-pipe.R | 4 - nser-1.3.3/nser/README.md | 34 +++------ nser-1.3.3/nser/build/vignette.rds |binary nser-1.3.3/nser/data |only nser-1.3.3/nser/inst/doc/bhav.Rmd | 1 nser-1.3.3/nser/inst/doc/bhav.html | 3 nser-1.3.3/nser/inst/doc/daytoweek.R |only nser-1.3.3/nser/inst/doc/daytoweek.Rmd |only nser-1.3.3/nser/inst/doc/daytoweek.html |only nser-1.3.3/nser/inst/doc/nseindex.html | 116 ++++++++++++++++---------------- nser-1.3.3/nser/inst/doc/nseipo.html | 18 +--- nser-1.3.3/nser/man/dailydata.Rd |only nser-1.3.3/nser/man/daytoweek.Rd |only nser-1.3.3/nser/vignettes/bhav.Rmd | 1 nser-1.3.3/nser/vignettes/daytoweek.Rmd |only 21 files changed, 108 insertions(+), 118 deletions(-)
Title: Highly Adaptive Lasso Conditional Density Estimation
Description: An algorithm for flexible conditional density estimation based on
application of pooled hazard regression to an artificial repeated measures
dataset constructed by discretizing the support of the outcome variable. To
facilitate non/semi-parametric estimation of the conditional density, the
highly adaptive lasso, a nonparametric regression function shown to reliably
estimate a large class of functions at a fast convergence rate, is utilized.
The pooled hazards data augmentation formulation implemented was first
described by Díaz and van der Laan (2011) <doi:10.2202/1557-4679.1356>. To
complement the conditional density estimation utilities, tools for efficient
nonparametric inverse probability weighted (IPW) estimation of the causal
effects of stochastic shift interventions (modified treatment policies),
directly utilizing the density estimation technique for construction of the
generalized propensity score, are provided. These IPW estimators utilize
undersmoothing (sieve estimation) of the conditional density estimators in
order to achieve the non/semi-parametric efficiency bound.
Author: Nima Hejazi [aut, cre, cph] (<https://orcid.org/0000-0002-7127-2789>),
David Benkeser [aut] (<https://orcid.org/0000-0002-1019-8343>),
Mark van der Laan [aut, ths] (<https://orcid.org/0000-0003-1432-5511>),
Rachael Phillips [ctb] (<https://orcid.org/0000-0002-8474-591X>)
Maintainer: Nima Hejazi <nh@nimahejazi.org>
Diff between haldensify versions 0.0.6 dated 2020-09-16 and 0.2.1 dated 2021-10-08
DESCRIPTION | 48 +++--- LICENSE | 2 MD5 | 65 +++++--- NAMESPACE | 35 ++++ NEWS.md | 137 +++++++++++++++++ R/confint.R |only R/haldensify.R | 258 +++++++++++++++++++-------------- R/ipw_shift.R |only R/plots.R |only R/predict.R | 107 ++++++++++--- R/selector_dcar.R |only R/selector_gcv.R |only R/selector_plateau.R |only R/utils.R | 213 ++++++++++++++++++++++++++- README.md | 147 ++++++++++++++---- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 54 +++++- inst/doc/intro_haldensify.R | 59 +++---- inst/doc/intro_haldensify.Rmd | 77 ++++----- inst/doc/intro_haldensify.html | 139 ++++++++++------- man/confint.ipw_haldensify.Rd |only man/cv_haldensify.Rd | 23 ++ man/dcar_selector.Rd |only man/fit_haldensify.Rd | 36 +++- man/format_long_hazards.Rd | 16 +- man/gcv_selector.Rd |only man/haldensify.Rd | 62 +++++-- man/ipw_shift.Rd |only man/make_bins.Rd |only man/map_hazard_to_density.Rd | 4 man/plateau_selector.Rd |only man/plot.haldensify.Rd |only man/predict.haldensify.Rd | 55 +++++-- man/print.haldensify.Rd |only man/print.ipw_haldensify.Rd |only tests/testthat/helpers_dgp.R |only tests/testthat/test-density_marginal.R |only tests/testthat/test-density_standard.R | 91 +++++++++-- tests/testthat/test-density_weights.R | 74 ++++----- tests/testthat/test-ipw_est.R |only tests/testthat/test-ratio_covar.R |only vignettes/intro_haldensify.Rmd | 77 ++++----- 43 files changed, 1277 insertions(+), 502 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data
management system with support for the Structured Query Language (SQL). This package includes all of
DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Mühleisen [aut, cre] (<https://orcid.org/0000-0001-8552-0029>),
Mark Raasveldt [aut] (<https://orcid.org/0000-0001-5005-6844>),
DuckDB Contributors [aut],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrochers [cph],
Victor Zverovich [cph],
RAD Game Tools [cph],
Valve Software [cph],
Rich Geldreich [cph],
Tenacious Software LLC [cph],
The RE2 Authors [cph],
Google Inc. [cph],
Facebook Inc. [cph],
Steven G. Johnson [cph],
Jiahao Chen [cph],
Tony Kelman [cph],
Jonas Fonseca [cph],
Lukas Fittl [cph],
Salvatore Sanfilippo [cph],
Art.sy, Inc. [cph],
Oran Agra [cph],
Redis Labs, Inc. [cph],
Melissa O'Neill [cph],
PCG Project contributors [cph]
Maintainer: Hannes Mühleisen <hannes@cwi.nl>
Diff between duckdb versions 0.2.9 dated 2021-09-06 and 0.3.0 dated 2021-10-08
duckdb-0.2.9/duckdb/src/duckdb/src/include/duckdb/parser/expression/table_star_expression.hpp |only duckdb-0.2.9/duckdb/src/duckdb/src/parser/expression/table_star_expression.cpp |only duckdb-0.3.0/duckdb/DESCRIPTION | 6 duckdb-0.3.0/duckdb/MD5 | 361 duckdb-0.3.0/duckdb/R/Connection.R | 15 duckdb-0.3.0/duckdb/README.md | 6 duckdb-0.3.0/duckdb/src/duckdb/amalgamation-1.cpp | 14 duckdb-0.3.0/duckdb/src/duckdb/amalgamation-2.cpp | 14 duckdb-0.3.0/duckdb/src/duckdb/amalgamation-3.cpp | 10 duckdb-0.3.0/duckdb/src/duckdb/amalgamation-4.cpp | 10 duckdb-0.3.0/duckdb/src/duckdb/amalgamation-5.cpp | 10 duckdb-0.3.0/duckdb/src/duckdb/amalgamation-6.cpp | 2 duckdb-0.3.0/duckdb/src/duckdb/amalgamation-7.cpp | 2 duckdb-0.3.0/duckdb/src/duckdb/amalgamation-8.cpp | 2 duckdb-0.3.0/duckdb/src/duckdb/extension/parquet/include/parquet_reader.hpp | 1 duckdb-0.3.0/duckdb/src/duckdb/extension/parquet/include/parquet_writer.hpp | 5 duckdb-0.3.0/duckdb/src/duckdb/extension/parquet/include/struct_column_reader.hpp | 13 duckdb-0.3.0/duckdb/src/duckdb/extension/parquet/parquet-extension.cpp | 8 duckdb-0.3.0/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp | 27 duckdb-0.3.0/duckdb/src/duckdb/extension/parquet/parquet_statistics.cpp | 10 duckdb-0.3.0/duckdb/src/duckdb/extension/parquet/parquet_writer.cpp | 8 duckdb-0.3.0/duckdb/src/duckdb/src/catalog/catalog.cpp | 176 duckdb-0.3.0/duckdb/src/duckdb/src/catalog/catalog_entry/schema_catalog_entry.cpp | 20 duckdb-0.3.0/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 23 duckdb-0.3.0/duckdb/src/duckdb/src/catalog/catalog_search_path.cpp |only duckdb-0.3.0/duckdb/src/duckdb/src/catalog/catalog_set.cpp | 37 duckdb-0.3.0/duckdb/src/duckdb/src/catalog/default/default_functions.cpp | 4 duckdb-0.3.0/duckdb/src/duckdb/src/common/file_system.cpp | 968 duckdb-0.3.0/duckdb/src/duckdb/src/common/gzip_file_system.cpp | 27 duckdb-0.3.0/duckdb/src/duckdb/src/common/local_file_system.cpp |only duckdb-0.3.0/duckdb/src/duckdb/src/common/operator/cast_operators.cpp | 22 duckdb-0.3.0/duckdb/src/duckdb/src/common/pipe_file_system.cpp | 25 duckdb-0.3.0/duckdb/src/duckdb/src/common/row_operations/row_external.cpp | 13 duckdb-0.3.0/duckdb/src/duckdb/src/common/row_operations/row_gather.cpp | 90 duckdb-0.3.0/duckdb/src/duckdb/src/common/row_operations/row_match.cpp | 1 duckdb-0.3.0/duckdb/src/duckdb/src/common/row_operations/row_scatter.cpp | 6 duckdb-0.3.0/duckdb/src/duckdb/src/common/serializer/buffered_file_reader.cpp | 5 duckdb-0.3.0/duckdb/src/duckdb/src/common/serializer/buffered_file_writer.cpp | 7 duckdb-0.3.0/duckdb/src/duckdb/src/common/sort/merge_sorter.cpp | 11 duckdb-0.3.0/duckdb/src/duckdb/src/common/sort/radix_sort.cpp | 14 duckdb-0.3.0/duckdb/src/duckdb/src/common/sort/sort_state.cpp | 139 duckdb-0.3.0/duckdb/src/duckdb/src/common/sort/sorted_block.cpp | 4 duckdb-0.3.0/duckdb/src/duckdb/src/common/string_util.cpp | 60 duckdb-0.3.0/duckdb/src/duckdb/src/common/types.cpp | 8 duckdb-0.3.0/duckdb/src/duckdb/src/common/types/chunk_collection.cpp | 15 duckdb-0.3.0/duckdb/src/duckdb/src/common/types/data_chunk.cpp | 14 duckdb-0.3.0/duckdb/src/duckdb/src/common/types/hugeint.cpp | 1 duckdb-0.3.0/duckdb/src/duckdb/src/common/types/interval.cpp | 14 duckdb-0.3.0/duckdb/src/duckdb/src/common/types/uuid.cpp |only duckdb-0.3.0/duckdb/src/duckdb/src/common/types/value.cpp | 33 duckdb-0.3.0/duckdb/src/duckdb/src/common/types/vector.cpp | 8 duckdb-0.3.0/duckdb/src/duckdb/src/common/value_operations/numeric_operations.cpp | 16 duckdb-0.3.0/duckdb/src/duckdb/src/common/vector_operations/vector_cast.cpp | 18 duckdb-0.3.0/duckdb/src/duckdb/src/common/virtual_file_system.cpp |only duckdb-0.3.0/duckdb/src/duckdb/src/execution/expression_executor.cpp | 13 duckdb-0.3.0/duckdb/src/duckdb/src/execution/expression_executor/execute_function.cpp | 7 duckdb-0.3.0/duckdb/src/duckdb/src/execution/index/art/leaf.cpp | 16 duckdb-0.3.0/duckdb/src/duckdb/src/execution/index/art/node16.cpp | 1 duckdb-0.3.0/duckdb/src/duckdb/src/execution/join_hashtable.cpp | 29 duckdb-0.3.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_window.cpp | 184 duckdb-0.3.0/duckdb/src/duckdb/src/execution/operator/helper/physical_set.cpp | 37 duckdb-0.3.0/duckdb/src/duckdb/src/execution/operator/join/perfect_hash_join_executor.cpp |only duckdb-0.3.0/duckdb/src/duckdb/src/execution/operator/join/physical_comparison_join.cpp | 5 duckdb-0.3.0/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp | 88 duckdb-0.3.0/duckdb/src/duckdb/src/execution/operator/order/physical_order.cpp | 22 duckdb-0.3.0/duckdb/src/duckdb/src/execution/operator/order/physical_top_n.cpp | 4 duckdb-0.3.0/duckdb/src/duckdb/src/execution/operator/persistent/buffered_csv_reader.cpp | 13 duckdb-0.3.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_export.cpp | 9 duckdb-0.3.0/duckdb/src/duckdb/src/execution/physical_plan/plan_comparison_join.cpp | 125 duckdb-0.3.0/duckdb/src/duckdb/src/execution/physical_plan/plan_set.cpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/execution/physical_plan/plan_set_operation.cpp | 3 duckdb-0.3.0/duckdb/src/duckdb/src/function/aggregate/distributive/minmax.cpp | 1 duckdb-0.3.0/duckdb/src/duckdb/src/function/pragma/pragma_functions.cpp | 12 duckdb-0.3.0/duckdb/src/duckdb/src/function/pragma/pragma_queries.cpp | 5 duckdb-0.3.0/duckdb/src/duckdb/src/function/scalar/date/age.cpp | 4 duckdb-0.3.0/duckdb/src/duckdb/src/function/scalar/date/date_sub.cpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/function/scalar/generic/current_setting.cpp | 20 duckdb-0.3.0/duckdb/src/duckdb/src/function/scalar/generic/least.cpp | 12 duckdb-0.3.0/duckdb/src/duckdb/src/function/scalar/list/list_extract.cpp | 89 duckdb-0.3.0/duckdb/src/duckdb/src/function/scalar/operators/arithmetic.cpp | 281 duckdb-0.3.0/duckdb/src/duckdb/src/function/scalar/operators/multiply.cpp | 1 duckdb-0.3.0/duckdb/src/duckdb/src/function/scalar/string/regexp.cpp | 43 duckdb-0.3.0/duckdb/src/duckdb/src/function/table/arrow.cpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/function/table/copy_csv.cpp | 7 duckdb-0.3.0/duckdb/src/duckdb/src/function/table/read_csv.cpp | 1 duckdb-0.3.0/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp | 4 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog.hpp | 65 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/schema_catalog_entry.hpp | 4 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_catalog_entry.hpp | 6 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_search_path.hpp |only duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_set.hpp | 12 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/case_insensitive_map.hpp |only duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/enums/expression_type.hpp | 1 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/enums/set_scope.h |only duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/file_opener.hpp |only duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/file_system.hpp | 165 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/gzip_file_system.hpp | 11 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/local_file_system.hpp |only duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/operator/cast_operators.hpp | 24 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/pipe_file_system.hpp | 12 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/profiler.hpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/row_operations/row_operations.hpp | 4 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_file_reader.hpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_file_writer.hpp | 6 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/sort/sort.hpp | 10 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/sort/sorted_block.hpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/string_util.hpp | 3 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/types.hpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/types/data_chunk.hpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/types/date.hpp | 59 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/types/interval.hpp | 5 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/types/selection_vector.hpp | 1 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/types/time.hpp | 18 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/types/timestamp.hpp | 44 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/types/uuid.hpp |only duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/types/validity_mask.hpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp | 4 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/types/vector.hpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/types/vector_buffer.hpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/common/virtual_file_system.hpp |only duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor_state.hpp | 13 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/execution/join_hashtable.hpp | 28 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_set.hpp | 14 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/perfect_hash_join_executor.hpp |only duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_hash_join.hpp | 40 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/buffered_csv_reader.hpp | 4 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_operator.hpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/operators.hpp | 6 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/regexp.hpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/function/scalar_function.hpp | 9 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/main/client_context.hpp | 15 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/main/client_context_file_opener.hpp |only duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/main/config.hpp | 3 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/optimizer/statistics_propagator.hpp | 11 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/list.hpp | 1 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/star_expression.hpp | 13 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_function_info.hpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_macro_info.hpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_sequence_info.hpp | 5 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_view_info.hpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/set_statement.hpp | 4 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp | 1 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/planner/bind_context.hpp | 40 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/planner/binder.hpp | 8 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/planner/expression.hpp | 4 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_join.hpp | 3 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_set.hpp | 7 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/planner/parsed_data/bound_create_table_info.hpp | 3 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/planner/table_binding.hpp | 4 duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/main/client_context.cpp | 26 duckdb-0.3.0/duckdb/src/duckdb/src/main/client_context_file_opener.cpp |only duckdb-0.3.0/duckdb/src/duckdb/src/main/connection.cpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/main/database.cpp | 4 duckdb-0.3.0/duckdb/src/duckdb/src/main/query_profiler.cpp | 51 duckdb-0.3.0/duckdb/src/duckdb/src/optimizer/join_order_optimizer.cpp | 5 duckdb-0.3.0/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_and_compress.cpp |only duckdb-0.3.0/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_filter.cpp | 6 duckdb-0.3.0/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_get.cpp | 4 duckdb-0.3.0/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_join.cpp | 20 duckdb-0.3.0/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_order.cpp | 10 duckdb-0.3.0/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_window.cpp | 15 duckdb-0.3.0/duckdb/src/duckdb/src/optimizer/statistics_propagator.cpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/parser/expression/star_expression.cpp | 94 duckdb-0.3.0/duckdb/src/duckdb/src/parser/parsed_expression.cpp | 7 duckdb-0.3.0/duckdb/src/duckdb/src/parser/parsed_expression_iterator.cpp | 1 duckdb-0.3.0/duckdb/src/duckdb/src/parser/statement/set_statement.cpp | 6 duckdb-0.3.0/duckdb/src/duckdb/src/parser/transform/expression/transform_columnref.cpp | 44 duckdb-0.3.0/duckdb/src/duckdb/src/parser/transform/expression/transform_function.cpp | 21 duckdb-0.3.0/duckdb/src/duckdb/src/parser/transform/statement/transform_set.cpp | 27 duckdb-0.3.0/duckdb/src/duckdb/src/planner/bind_context.cpp | 135 duckdb-0.3.0/duckdb/src/duckdb/src/planner/binder.cpp | 8 duckdb-0.3.0/duckdb/src/duckdb/src/planner/binder/query_node/bind_select_node.cpp | 9 duckdb-0.3.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_recursive_cte_node.cpp | 1 duckdb-0.3.0/duckdb/src/duckdb/src/planner/binder/statement/bind_create.cpp | 3 duckdb-0.3.0/duckdb/src/duckdb/src/planner/binder/statement/bind_set.cpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/planner/binder/statement/bind_summarize.cpp | 33 duckdb-0.3.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_joinref.cpp | 111 duckdb-0.3.0/duckdb/src/duckdb/src/planner/table_binding.cpp | 7 duckdb-0.3.0/duckdb/src/duckdb/src/storage/buffer_manager.cpp | 23 duckdb-0.3.0/duckdb/src/duckdb/src/storage/data_table.cpp | 6 duckdb-0.3.0/duckdb/src/duckdb/src/storage/local_storage.cpp | 28 duckdb-0.3.0/duckdb/src/duckdb/src/storage/single_file_block_manager.cpp | 2 duckdb-0.3.0/duckdb/src/duckdb/src/storage/storage_info.cpp | 2 duckdb-0.3.0/duckdb/src/duckdb/third_party/libpg_query/include/nodes/parsenodes.hpp | 16 duckdb-0.3.0/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp |13449 +++++----- duckdb-0.3.0/duckdb/src/include/typesr.hpp | 7 duckdb-0.3.0/duckdb/src/rapi.cpp | 2 duckdb-0.3.0/duckdb/src/statement.cpp | 434 duckdb-0.3.0/duckdb/tests/testthat/test_list.R |only duckdb-0.3.0/duckdb/tests/testthat/test_register_arrow.R | 8 191 files changed, 9739 insertions(+), 8955 deletions(-)
Title: Discrete Bayesian Additive Regression Trees Sampler
Description: Fits Bayesian additive regression trees (BART; Chipman, George, and McCulloch (2010) <doi:10.1214/09-AOAS285>) while allowing the updating of predictors or response so that BART can be incorporated as a conditional model in a Gibbs/Metropolis-Hastings sampler. Also serves as a drop-in replacement for package 'BayesTree'.
Author: Vincent Dorie [aut, cre] (<https://orcid.org/0000-0002-9576-3064>),
Hugh Chipman [aut],
Robert McCulloch [aut],
Armon Dadgar [ctb] (adaptive radix tree),
R Core Team [ctb] (basis of RNG),
Guido U Draheim [ctb] (ax_check_compile_flag.m4),
Maarten Bosmans [ctb] (ax_check_compile_flag.m4),
Christophe Tournayre [ctb] (ax_compiler_ext.m4, ax_ext.m4),
Michael Petch [ctb] (ax_compiler_ext.m4, ax_ext.m4,
ax_gcc_x86_avx_xgetbv.m4, ax_gcc_x86_cpuid.m4),
Rafael de Lucena Valle [ctb] (ax_compiler_ext.m4, ax_ext.m4),
Steven G. Johnson [ctb] (ax_compiler_vendor.m4, ax_gcc_x86_cpuid.m4,
ax_pthread.m4, <https://orcid.org/0000-0001-7327-4967>),
Matteo Frigo [ctb] (ax_compiler_vendor.m4, ax_gcc_x86_cpuid.m4),
John Zaitseff [ctb] (ax_compiler_vendor.m4),
Todd Veldhuizen [ctb] (ax_cxx_namespace_std.m4),
Luc Maisonobe [ctb] (ax_cxx_namespace_std.m4),
Scott Pakin [ctb] (ax_func_posix_memalign.m4,
<https://orcid.org/0000-0002-5220-1985>),
Daniel Richard G. [ctb] (ax_pthread.m4)
Maintainer: Vincent Dorie <vdorie@gmail.com>
Diff between dbarts versions 0.9-19 dated 2021-01-05 and 0.9-20 dated 2021-10-08
DESCRIPTION | 8 MD5 | 129 NAMESPACE | 2 R/A_class.R | 39 R/bart.R | 45 R/data.R | 18 R/dbarts.R | 5 R/generics.R | 3 R/model.R | 61 R/partialDependence.R | 20 R/rbart.R | 166 R/sliceSample.R | 12 R/utility.R | 2 R/xbart.R | 5 build/vignette.rds |binary configure | 5757 +++++++++++++++++-------------- configure.ac | 49 inst/NEWS.Rd | 43 inst/doc/gibbs_sampler_mixture_model.pdf |binary inst/include/dbarts/R_C_interface.hpp | 18 inst/include/dbarts/bartFit.hpp | 7 inst/include/dbarts/model.hpp | 68 man/bart.Rd | 40 man/dbarts.Rd | 3 man/rbart.Rd | 9 src/R_C_interface.cpp | 26 src/R_interface.cpp | 6 src/R_interface_common.cpp | 68 src/R_interface_crossvalidate.cpp | 9 src/R_interface_sampler.cpp | 9 src/config.hpp.in | 37 src/config.hpp.win | 4 src/crossvalidate.cpp | 15 src/dbarts/bartFit.cpp | 99 src/dbarts/binaryIO.cpp | 42 src/dbarts/config.hpp.win | 4 src/dbarts/likelihood.cpp | 2 src/dbarts/node.cpp | 4 src/dbarts/node.hpp | 2 src/dbarts/parameterPrior.cpp | 51 src/dbarts/tree.cpp | 4 src/external/config.h.win | 4 src/external/linearAlgebra.c | 40 src/external/randomBase.c | 3 src/external/randomNorm.c | 8 src/guessNumCores.cpp | 1 src/include/external/R.h | 9 src/include/external/Rinternals.h | 7 src/include/external/stats.h | 8 src/misc/config.h.win | 4 src/misc/hierarchicalThreadManager.c | 20 tests/testthat/test-03-dbartsControl.R | 128 tests/testthat/test-05-binaryResponse.R | 10 tests/testthat/test-06-dbartsSampler.R | 2 tests/testthat/test-08-xbart.R | 14 tests/testthat/test-14-rbart.R | 55 tests/testthat/test-17-rng.R |only tools/build-aux/config.guess | 1240 +++--- tools/build-aux/config.sub | 96 tools/m4/ax_check_compile_flag.m4 | 33 tools/m4/ax_compiler_ext.m4 | 13 tools/m4/ax_cxx_namespace_std.m4 | 17 tools/m4/ax_func_posix_memalign.m4 | 11 tools/m4/ax_log1p_in_namespace_std.m4 | 2 tools/m4/ax_pthread.m4 | 248 - tools/m4/ax_snprintf_in_namespace_std.m4 | 2 66 files changed, 5040 insertions(+), 3826 deletions(-)
Title: Iterative Proportional Fitting Algorithms for Nested Structures
Description: The Iterative Proportional Fitting (IPF) algorithm operates on count data.
This package offers implementations for several algorithms that extend this to
nested structures: 'parent' and 'child' items for both of which constraints can be provided.
The fitting algorithms include Iterative Proportional Updating <https://trid.trb.org/view/881554>,
Hierarchical IPF <doi:10.3929/ethz-a-006620748>, Entropy Optimization <https://trid.trb.org/view/881144>,
and Generalized Raking <doi:10.2307/2290793>. Additionally, a number of replication methods
is also provided such as 'Truncate, replicate, sample' <doi:10.1016/j.compenvurbsys.2013.03.004>.
Author: Kirill Müller [aut, cph] (Creator of the package),
Kay W. Axhausen [ths] (Advisor of Kirill Müller),
Amarin Siripanich [aut, cre] (Contributed `ml_replicate()`),
Taha H. Rashidi [ths] (Advisor of Amarin Siripanich)
Maintainer: Amarin Siripanich <amarin.siri@gmail.com>
Diff between mlfit versions 0.5.2 dated 2021-07-02 and 0.5.3 dated 2021-10-08
DESCRIPTION | 13 MD5 | 88 +- NAMESPACE | 110 +- R/S3.R | 44 - R/flatten_ml_fit_problem.R | 1350 +++++++++++++++++------------------ R/grake.R | 580 +++++++-------- R/margins.R | 232 +++--- R/ml_fit.R | 373 ++++----- R/ml_fit_dss.R | 110 +- R/ml_fit_entropy_o.R | 190 ++-- R/ml_fit_hipf.R | 444 +++++------ R/ml_fit_ipu.R | 176 ++-- R/ml_problem.R | 580 +++++++-------- R/ml_replicate.R | 270 +++---- R/mlfit-package.R | 46 - R/toy.R | 50 - R/utils.R | 28 man/compute_margins.Rd | 120 +-- man/dss.Rd | 196 ++--- man/fitting_problem.Rd | 44 - man/flatten_ml_fit_problem.Rd | 114 +- man/gginv.Rd | 76 - man/ml_fit.Rd | 334 ++++---- man/ml_problem.Rd | 312 ++++---- man/ml_replicate.Rd | 102 +- man/mlfit-package.Rd | 100 +- man/toy_example.Rd | 48 - tests/test-all.R | 6 tests/testthat/test-algorithms.R | 84 +- tests/testthat/test-attrib.R | 76 - tests/testthat/test-calib-argcheck.R | 42 - tests/testthat/test-calib-trivial.R | 130 +-- tests/testthat/test-corner.R | 210 +++-- tests/testthat/test-correlating.R | 80 +- tests/testthat/test-examples.R | 2 tests/testthat/test-flatten.R | 348 ++++----- tests/testthat/test-ginv-trivial.R | 46 - tests/testthat/test-import.R | 176 ++-- tests/testthat/test-missing_level.R | 76 - tests/testthat/test-replicate.R | 76 - tests/testthat/test-return.R | 56 - tests/testthat/test-sparse.R | 32 tests/testthat/test-toy.R | 20 tests/testthat/test-utils.R | 32 tests/testthat/test-zones.R | 320 ++++---- 45 files changed, 3998 insertions(+), 3944 deletions(-)
Title: Tools for Gaussian Process Modeling in Uncertainty
Quantification
Description: Gaussian processes (GPs) have been widely used to model spatial data, spatio-temporal data, and computer experiments in diverse areas of statistics including spatial statistics, spatio-temporal statistics, uncertainty quantification, and machine learning. This package creates basic tools for fitting and prediction based on GPs with spatial data, spatio-temporal data, and computer experiments. Key characteristics for this GP tool include: (1) the comprehensive implementation of various covariance functions including the Matérn family and the Confluent Hypergeometric family with isotropic form, tensor form, and automatic relevance determination form, where the isotropic form is widely used in spatial statistics, the tensor form is widely used in design and analysis of computer experiments and uncertainty quantification, and the automatic relevance determination form is widely used in machine learning; (2) implementations via Markov chain Monte Carlo (MCMC) algorithms and optimization algorithms for GP models with all the implemented covariance functions. The methods for fitting and prediction are mainly implemented in a Bayesian framework; (3) model evaluation via Fisher information and predictive metrics such as predictive scores; (4) built-in functionality for simulating GPs with all the implemented covariance functions; (5) unified implementation to allow easy specification of various GPs.
Author: Pulong Ma [aut, cre]
Maintainer: Pulong Ma <mpulong@gmail.com>
Diff between GPBayes versions 0.1.0-2 dated 2021-09-13 and 0.1.0-2.1 dated 2021-10-08
DESCRIPTION | 11 +++++------ MD5 | 6 +++--- inst/CITATION | 9 ++++----- man/GPBayes-package.Rd | 6 +++--- 4 files changed, 15 insertions(+), 17 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-29 0.2.0
2016-09-29 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-17 1.1.1
2016-01-29 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-09 1.0.2
2017-04-11 1.0.1
Title: Sensitivity Analysis Tools for Regression Models
Description: Implements a suite of sensitivity analysis tools
that extends the traditional omitted variable bias framework and makes it easier
to understand the impact of omitted variables in regression models, as discussed in Cinelli, C. and Hazlett, C. (2020), "Making Sense of Sensitivity: Extending Omitted Variable Bias." Journal of the Royal Statistical Society, Series B (Statistical Methodology) <doi:10.1111/rssb.12348>.
Author: Carlos Cinelli [aut, cre],
Jeremy Ferwerda [aut],
Chad Hazlett [aut],
Aaron Rudkin [ctb]
Maintainer: Carlos Cinelli <carloscinelli@hotmail.com>
Diff between sensemakr versions 0.1.3 dated 2020-04-28 and 0.1.4 dated 2021-10-08
DESCRIPTION | 14 - MD5 | 50 ++-- NAMESPACE | 2 R/data.R | 2 R/ovb_bounds.R | 28 ++ R/ovb_plots.R | 39 ++- R/sensemakr.R | 7 R/sensitivity_stats.R | 2 build/vignette.rds |binary inst/doc/informal_benchmarking.Rmd | 10 inst/doc/informal_benchmarking.html | 366 +++++++++------------------------- inst/doc/sensemakr.html | 322 +++++++---------------------- man/add_bound_to_contour.Rd | 18 + man/colombia.Rd | 8 man/darfur.Rd | 6 man/figures/figures-basic-usage-1.png |binary man/figures/figures-basic-usage-2.png |binary man/figures/figures-basic-usage-3.png |binary man/ovb_bounds.Rd | 18 + man/ovb_contour_plot.Rd | 3 man/sensemakr.Rd | 6 tests/testthat/Rplots.pdf |binary tests/testthat/test-01-manual-tests.R | 10 tests/testthat/test-02-darfur.R | 18 + tests/testthat/test-07-bounds.R | 28 ++ vignettes/informal_benchmarking.Rmd | 10 26 files changed, 390 insertions(+), 577 deletions(-)
Title: Matrices for Repeat-Sales Price Indexes
Description: A small package for calculating the matrices in Shiller (1991, <doi:10.1016/S1051-1377(05)80028-2>) that serve as the foundation for many repeat-sales price indexes.
Author: Steve Martin [aut, cre, cph]
Maintainer: Steve Martin <stevemartin041@gmail.com>
Diff between rsmatrix versions 0.1.2 dated 2021-01-23 and 0.2.0 dated 2021-10-08
rsmatrix-0.1.2/rsmatrix/R/matrices.R |only rsmatrix-0.1.2/rsmatrix/R/pairs.R |only rsmatrix-0.1.2/rsmatrix/R/var.R |only rsmatrix-0.1.2/rsmatrix/man/matrices.Rd |only rsmatrix-0.1.2/rsmatrix/man/pairs.Rd |only rsmatrix-0.2.0/rsmatrix/DESCRIPTION | 7 rsmatrix-0.2.0/rsmatrix/MD5 | 34 +- rsmatrix-0.2.0/rsmatrix/NAMESPACE | 6 rsmatrix-0.2.0/rsmatrix/NEWS | 8 rsmatrix-0.2.0/rsmatrix/R/rs_matrix.R |only rsmatrix-0.2.0/rsmatrix/R/rs_pairs.R |only rsmatrix-0.2.0/rsmatrix/R/rs_var.R |only rsmatrix-0.2.0/rsmatrix/README.md | 15 - rsmatrix-0.2.0/rsmatrix/inst |only rsmatrix-0.2.0/rsmatrix/man/rs_matrix.Rd |only rsmatrix-0.2.0/rsmatrix/man/rs_pairs.Rd |only rsmatrix-0.2.0/rsmatrix/man/rs_var.Rd | 20 - rsmatrix-0.2.0/rsmatrix/man/rsmatrix.Rd | 8 rsmatrix-0.2.0/rsmatrix/po |only rsmatrix-0.2.0/rsmatrix/tests/Examples/rsmatrix-Ex.Rout.save | 56 +-- rsmatrix-0.2.0/rsmatrix/tests/tests_matrices.R | 162 +++++------ rsmatrix-0.2.0/rsmatrix/tests/tests_matrices.Rout.save |only rsmatrix-0.2.0/rsmatrix/tests/tests_pairs.R | 35 -- rsmatrix-0.2.0/rsmatrix/tests/tests_pairs.Rout.save |only 24 files changed, 175 insertions(+), 176 deletions(-)
Title: The Multiplicative Multinomial Distribution
Description: Various utilities for the Multiplicative Multinomial distribution.
Author: Robin K. S. Hankin and P. M. E. Altham
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between MM versions 1.6-5 dated 2018-05-16 and 1.6-6 dated 2021-10-08
DESCRIPTION | 13 ++++++++----- MD5 | 31 +++++++++++++++++-------------- NAMESPACE | 2 +- build/MM.pdf |only build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 8 ++++---- inst/doc/Gianfranco.pdf |binary man/MB.Rd | 32 ++++++++++++++++---------------- man/MM-package.Rd | 2 +- man/MM.Rd | 33 +++++++++++++++------------------ man/figures |only man/multinomial.Rd | 13 +++++++------ man/paras.Rd | 6 +++--- man/pollen.Rd | 4 ++-- man/suffstats.Rd | 4 ++-- man/sweets.Rd | 8 ++++---- vignettes/MM.bib | 6 +++--- 18 files changed, 83 insertions(+), 79 deletions(-)
Title: A Suite of Checks for Identification of Potential Errors in a
Data Frame as Part of the Data Screening Process
Description: Data screening is an important first step of any statistical
analysis. dataMaid auto generates a customizable data report with a thorough
summary of the checks and the results that a human can use to identify possible
errors. It provides an extendable suite of test for common potential
errors in a dataset.
Author: Anne Helby Petersen [aut],
Claus Thorn Ekstrøm [aut, cre]
Maintainer: Claus Thorn Ekstrøm <ekstrom@sund.ku.dk>
Diff between dataMaid versions 1.4.0 dated 2019-12-10 and 1.4.1 dated 2021-10-08
DESCRIPTION | 11 MD5 | 57 - R/check.R | 2 R/dataMaid-package.R | 12 R/dataMaid_as_factor.R | 8 R/identifyMissing.R | 2 R/identifyNums.R | 2 R/makeCodebook.R | 2 R/makeDataReport.R | 17 R/messageGenerator.R | 38 + R/summarize.R | 2 R/visualize.R | 2 build/partial.rdb |only build/vignette.rds |binary inst/doc/extending_dataMaid.Rmd | 42 - inst/doc/extending_dataMaid.html | 1205 ++++++++++++++------------------------- man/artData.Rd | 8 man/bigPresidentData.Rd | 10 man/check.Rd | 2 man/exampleData.Rd | 6 man/figures |only man/makeCodebook.Rd | 2 man/makeDataReport.Rd | 2 man/presidentData.Rd | 10 man/summarize.Rd | 2 man/testData.Rd | 6 man/toyData.Rd | 8 man/visualize.Rd | 2 tests/testthat/spss_labelled.rda |only tests/testthat/testmakeReport.R | 15 vignettes/extending_dataMaid.Rmd | 42 - 31 files changed, 648 insertions(+), 869 deletions(-)