Title: Automate Package and Project Setup
Description: Automate package and project setup tasks that are
otherwise performed manually. This includes setting up unit testing,
test coverage, continuous integration, Git, 'GitHub', licenses,
'Rcpp', 'RStudio' projects, and more.
Author: Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
Malcolm Barrett [aut] (<https://orcid.org/0000-0003-0299-5825>),
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between usethis versions 2.0.1 dated 2021-02-10 and 2.1.0 dated 2021-10-16
usethis-2.0.1/usethis/inst/templates/data-table.R |only usethis-2.0.1/usethis/man/git_branch_default.Rd |only usethis-2.0.1/usethis/man/use_github_action.Rd |only usethis-2.0.1/usethis/tests/testthat/_snaps/pipe.md |only usethis-2.1.0/usethis/DESCRIPTION | 31 usethis-2.1.0/usethis/MD5 | 246 ++++--- usethis-2.1.0/usethis/NAMESPACE | 10 usethis-2.1.0/usethis/NEWS.md | 130 ++++ usethis-2.1.0/usethis/R/badge.R | 2 usethis-2.1.0/usethis/R/block.R | 30 usethis-2.1.0/usethis/R/browse.R | 2 usethis-2.1.0/usethis/R/ci.R | 12 usethis-2.1.0/usethis/R/code-of-conduct.R | 11 usethis-2.1.0/usethis/R/coverage.R | 16 usethis-2.1.0/usethis/R/data-table.R | 29 usethis-2.1.0/usethis/R/data.R | 5 usethis-2.1.0/usethis/R/description.R | 91 ++ usethis-2.1.0/usethis/R/edit.R | 40 - usethis-2.1.0/usethis/R/git-default-branch.R |only usethis-2.1.0/usethis/R/git.R | 222 ++---- usethis-2.1.0/usethis/R/github-actions.R | 254 +++---- usethis-2.1.0/usethis/R/github-labels.R | 22 usethis-2.1.0/usethis/R/github-pages.R | 39 - usethis-2.1.0/usethis/R/github.R | 42 + usethis-2.1.0/usethis/R/github_token.R | 219 +++++- usethis-2.1.0/usethis/R/helpers.R | 31 usethis-2.1.0/usethis/R/issue.R | 4 usethis-2.1.0/usethis/R/lifecycle.R | 15 usethis-2.1.0/usethis/R/logo.R | 5 usethis-2.1.0/usethis/R/make.R | 5 usethis-2.1.0/usethis/R/package.R | 12 usethis-2.1.0/usethis/R/pipe.R | 21 usethis-2.1.0/usethis/R/pkgdown.R | 138 ++-- usethis-2.1.0/usethis/R/pr.R | 325 +++++----- usethis-2.1.0/usethis/R/proj.R | 4 usethis-2.1.0/usethis/R/rcpp.R | 6 usethis-2.1.0/usethis/R/readme.R | 20 usethis-2.1.0/usethis/R/release.R | 267 ++++++-- usethis-2.1.0/usethis/R/roxygen.R | 36 - usethis-2.1.0/usethis/R/rprofile.R | 1 usethis-2.1.0/usethis/R/rstudio.R | 2 usethis-2.1.0/usethis/R/spelling.R | 2 usethis-2.1.0/usethis/R/template.R | 1 usethis-2.1.0/usethis/R/test.R | 8 usethis-2.1.0/usethis/R/tibble.R | 5 usethis-2.1.0/usethis/R/tidy-upkeep.R |only usethis-2.1.0/usethis/R/tidyverse.R | 101 +-- usethis-2.1.0/usethis/R/use_github_file.R |only usethis-2.1.0/usethis/R/use_import_from.R |only usethis-2.1.0/usethis/R/usethis-defunct.R | 45 + usethis-2.1.0/usethis/R/usethis-package.R | 6 usethis-2.1.0/usethis/R/utils-git.R | 82 +- usethis-2.1.0/usethis/R/utils-github.R | 28 usethis-2.1.0/usethis/R/utils-glue.R | 4 usethis-2.1.0/usethis/R/utils-ui.R |only usethis-2.1.0/usethis/R/utils.R | 50 + usethis-2.1.0/usethis/R/version.R | 2 usethis-2.1.0/usethis/README.md | 23 usethis-2.1.0/usethis/inst/WORDLIST | 11 usethis-2.1.0/usethis/inst/templates/CODE_OF_CONDUCT.md | 10 usethis-2.1.0/usethis/inst/templates/cran-comments.md | 5 usethis-2.1.0/usethis/inst/templates/package-README | 18 usethis-2.1.0/usethis/inst/templates/packagename-package.R | 2 usethis-2.1.0/usethis/inst/templates/project-README | 2 usethis-2.1.0/usethis/inst/templates/tidy-contributing.md | 2 usethis-2.1.0/usethis/inst/templates/tidy-eval.R | 140 +++- usethis-2.1.0/usethis/man/badges.Rd | 2 usethis-2.1.0/usethis/man/browse-this.Rd | 2 usethis-2.1.0/usethis/man/ci.Rd | 10 usethis-2.1.0/usethis/man/create_from_github.Rd | 4 usethis-2.1.0/usethis/man/create_package.Rd | 4 usethis-2.1.0/usethis/man/edit.Rd | 5 usethis-2.1.0/usethis/man/git-default-branch.Rd |only usethis-2.1.0/usethis/man/git_credentials.Rd | 2 usethis-2.1.0/usethis/man/git_vaccinate.Rd | 2 usethis-2.1.0/usethis/man/github-token.Rd | 17 usethis-2.1.0/usethis/man/github_actions.Rd | 118 +++ usethis-2.1.0/usethis/man/issue-this.Rd | 4 usethis-2.1.0/usethis/man/pull-requests.Rd | 11 usethis-2.1.0/usethis/man/tidyverse.Rd | 31 usethis-2.1.0/usethis/man/use_code_of_conduct.Rd | 5 usethis-2.1.0/usethis/man/use_data_table.Rd | 18 usethis-2.1.0/usethis/man/use_description.Rd | 6 usethis-2.1.0/usethis/man/use_github.Rd | 9 usethis-2.1.0/usethis/man/use_github_file.Rd |only usethis-2.1.0/usethis/man/use_github_labels.Rd | 16 usethis-2.1.0/usethis/man/use_github_links.Rd | 2 usethis-2.1.0/usethis/man/use_github_pages.Rd | 2 usethis-2.1.0/usethis/man/use_github_release.Rd | 23 usethis-2.1.0/usethis/man/use_import_from.Rd |only usethis-2.1.0/usethis/man/use_lifecycle.Rd | 14 usethis-2.1.0/usethis/man/use_pkgdown.Rd | 11 usethis-2.1.0/usethis/man/use_release_issue.Rd | 21 usethis-2.1.0/usethis/man/use_tibble.Rd | 2 usethis-2.1.0/usethis/man/usethis-defunct.Rd | 29 usethis-2.1.0/usethis/man/usethis-package.Rd | 6 usethis-2.1.0/usethis/tests/testthat/_snaps/course.md | 4 usethis-2.1.0/usethis/tests/testthat/_snaps/data-table.md |only usethis-2.1.0/usethis/tests/testthat/_snaps/git-default-branch.md |only usethis-2.1.0/usethis/tests/testthat/_snaps/github-actions.md |only usethis-2.1.0/usethis/tests/testthat/_snaps/lifecycle.md |only usethis-2.1.0/usethis/tests/testthat/_snaps/package.md |only usethis-2.1.0/usethis/tests/testthat/_snaps/readme.md |only usethis-2.1.0/usethis/tests/testthat/_snaps/release.md | 60 + usethis-2.1.0/usethis/tests/testthat/_snaps/tibble.md | 10 usethis-2.1.0/usethis/tests/testthat/_snaps/tidy-upkeep.md |only usethis-2.1.0/usethis/tests/testthat/_snaps/tidyverse.md |only usethis-2.1.0/usethis/tests/testthat/_snaps/use_import_from.md |only usethis-2.1.0/usethis/tests/testthat/helper.R | 4 usethis-2.1.0/usethis/tests/testthat/setup.R | 12 usethis-2.1.0/usethis/tests/testthat/test-addin.R | 2 usethis-2.1.0/usethis/tests/testthat/test-badge.R | 9 usethis-2.1.0/usethis/tests/testthat/test-block.R |only usethis-2.1.0/usethis/tests/testthat/test-code-of-conduct.R | 2 usethis-2.1.0/usethis/tests/testthat/test-data-table.R | 25 usethis-2.1.0/usethis/tests/testthat/test-data.R | 2 usethis-2.1.0/usethis/tests/testthat/test-description.R | 71 ++ usethis-2.1.0/usethis/tests/testthat/test-edit.R | 13 usethis-2.1.0/usethis/tests/testthat/test-git-default-branch.R |only usethis-2.1.0/usethis/tests/testthat/test-git.R | 32 usethis-2.1.0/usethis/tests/testthat/test-github-actions.R | 158 ++-- usethis-2.1.0/usethis/tests/testthat/test-helpers.R | 45 - usethis-2.1.0/usethis/tests/testthat/test-lifecycle.R | 15 usethis-2.1.0/usethis/tests/testthat/test-package.R | 10 usethis-2.1.0/usethis/tests/testthat/test-pipe.R | 6 usethis-2.1.0/usethis/tests/testthat/test-pkgdown.R | 6 usethis-2.1.0/usethis/tests/testthat/test-proj.R | 11 usethis-2.1.0/usethis/tests/testthat/test-readme.R | 42 + usethis-2.1.0/usethis/tests/testthat/test-release.R | 112 ++- usethis-2.1.0/usethis/tests/testthat/test-tibble.R | 10 usethis-2.1.0/usethis/tests/testthat/test-tidy-upkeep.R |only usethis-2.1.0/usethis/tests/testthat/test-tidyverse.R | 14 usethis-2.1.0/usethis/tests/testthat/test-use_github_file.R |only usethis-2.1.0/usethis/tests/testthat/test-use_import_from.R |only usethis-2.1.0/usethis/tests/testthat/test-utils-github.R | 7 usethis-2.1.0/usethis/tests/testthat/test-utils.R | 14 usethis-2.1.0/usethis/tests/testthat/test-write.R | 75 ++ 137 files changed, 2581 insertions(+), 1458 deletions(-)
Title: Easily Harvest (Scrape) Web Pages
Description: Wrappers around the 'xml2' and 'httr' packages to
make it easy to download, then manipulate, HTML and XML.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between rvest versions 1.0.1 dated 2021-07-26 and 1.0.2 dated 2021-10-16
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NEWS.md | 6 ++++++ R/html.R | 17 +++++++++-------- R/table.R | 5 +++++ R/utils.R | 1 - README.md | 28 ++++++++++++++-------------- inst/doc/rvest.html | 8 ++++---- man/html_attr.Rd | 17 +++++++++-------- man/rvest-package.Rd | 3 +-- tests/testthat/_snaps/table.md | 4 ++++ tests/testthat/test-encoding.R | 2 ++ tests/testthat/test-table.R | 6 ++++++ 13 files changed, 76 insertions(+), 53 deletions(-)
Title: Classify Occurrences by Confidence Levels in the Species ID
Description: Classify occurrence records based on confidence
levels of species identification. In addition, implement tools to filter
occurrence inside grid cells and to manually check for possibles errors with
an interactive shiny application.
Author: Arthur Vinicius Rodrigues [cre],
Gabriel Nakamura [aut],
Leandro Duarte [aut]
Maintainer: Arthur Vinicius Rodrigues <rodrigues.arthur.v@gmail.com>
Diff between naturaList versions 0.4.1 dated 2021-08-21 and 0.4.2 dated 2021-10-16
DESCRIPTION | 6 - MD5 | 42 ++++---- NEWS.md | 5 R/clean_eval.R | 138 +++++++++++---------------- R/create_spec_df.R | 11 -- R/data_description.R | 15 ++ R/define_env_space.R | 16 +-- README.md | 6 - build/partial.rdb |binary data/r.temp.prec.rda |only data/spec_names_ex.rda |only inst/doc/natutaList_clean_eval_vignette.R | 16 --- inst/doc/natutaList_clean_eval_vignette.Rmd | 18 +-- inst/doc/natutaList_clean_eval_vignette.html | 28 ++--- inst/doc/natutaList_vignette.R | 3 inst/doc/natutaList_vignette.Rmd | 5 inst/doc/natutaList_vignette.html | 5 man/clean_eval.Rd | 138 +++++++++++---------------- man/create_spec_df.Rd | 11 -- man/define_env_space.Rd | 14 -- man/r.temp.prec.Rd |only man/spec_names_ex.Rd |only vignettes/natutaList_clean_eval_vignette.Rmd | 18 +-- vignettes/natutaList_vignette.Rmd | 5 24 files changed, 223 insertions(+), 277 deletions(-)
Title: Causal Inference using Multivariate Generalized Propensity Score
Description: Methods for estimating and utilizing the multivariate generalized
propensity score (mvGPS) for multiple continuous exposures described in
Williams, J.R, and Crespi, C.M. (2020) <arxiv:2008.13767>. The methods allow
estimation of a dose-response surface relating the joint distribution of multiple
continuous exposure variables to an outcome. Weights are constructed assuming a
multivariate normal density for the marginal and conditional distribution of
exposures given a set of confounders. Confounders can be different for different
exposure variables. The weights are designed to achieve balance across all
exposure dimensions and can be used to estimate dose-response surfaces.
Author: Justin Williams [aut, cre] (<https://orcid.org/0000-0002-5045-2764>)
Maintainer: Justin Williams <williazo@ucla.edu>
Diff between mvGPS versions 1.1.1 dated 2021-04-28 and 1.2.1 dated 2021-10-16
DESCRIPTION | 19 +++++-- MD5 | 28 +++++----- NEWS | 6 ++ R/bal.R | 117 ++++++++++++++++++++++---------------------- R/gen_D.R | 97 +++++++++++++++++++++--------------- R/mvGPS.R | 2 build/partial.rdb |binary inst/doc/mvGPS-intro.R | 1 inst/doc/mvGPS-intro.Rmd | 1 inst/doc/mvGPS-intro.html | 4 - man/bal.Rd | 52 +++++++++---------- man/gen_D.Rd | 62 ++++++++++++----------- tests/testthat/test-bal.R | 10 --- tests/testthat/test-mvGPS.R | 1 vignettes/mvGPS-intro.Rmd | 1 15 files changed, 216 insertions(+), 185 deletions(-)
Title: Quantitative Support of Decision Making under Uncertainty
Description: Supporting the quantitative analysis of binary welfare based
decision making processes using Monte Carlo simulations. Decision support
is given on two levels: (i) The actual decision level is to choose between
two alternatives under probabilistic uncertainty. This package calculates
the optimal decision based on maximizing expected welfare. (ii) The meta
decision level is to allocate resources to reduce the uncertainty in the
underlying decision problem, i.e to increase the current information to
improve the actual decision making process. This problem is dealt with
using the Value of Information Analysis. The Expected Value of
Information for arbitrary prospective estimates can be calculated as
well as Individual Expected Value of Perfect Information.
The probabilistic calculations are done via Monte Carlo
simulations. This Monte Carlo functionality can be used on its own.
Author: Eike Luedeling [cre, aut] (University of Bonn),
Lutz Goehring [aut] (ICRAF and Lutz Goehring Consulting),
Katja Schiffers [aut] (University of Bonn),
Cory Whitney [aut] (University of Bonn),
Eduardo Fernandez [aut] (University of Bonn)
Maintainer: Eike Luedeling <eike@eikeluedeling.com>
Diff between decisionSupport versions 1.107 dated 2021-10-16 and 1.108 dated 2021-10-16
DESCRIPTION | 6 - MD5 | 10 +-- R/scenario_mc.R | 3 build/partial.rdb |binary inst/doc/example_decision_function.html | 14 ++-- inst/doc/wildfire_example.html | 105 +++++++++++++++----------------- 6 files changed, 69 insertions(+), 69 deletions(-)
More information about decisionSupport at CRAN
Permanent link
Title: Data Only: The Correlates of State Policy Project Dataset
Description: Contains the Correlates of State Policy Project dataset (+ codebook) assembled by Marty P. Jordan and Matt Grossmann (2020) <http://ippsr.msu.edu/public-policy/correlates-state-policy> used by the 'cspp' package. The Correlates data contains over 2000 variables across more than 100 years that pertain to state politics and policy in the United States.
Author: Caleb Lucas (https://caleblucas.com/) and Joshua McCrain (http://joshuamccrain.com/)
Maintainer: Caleb Lucas <calebjlucas@gmail.com>
Diff between csppData versions 0.1.3 dated 2021-06-07 and 0.1.4 dated 2021-10-16
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/codebook.R | 2 +- R/correlates.R | 2 +- R/zzz.R | 8 ++++---- README.md | 31 +++++++++++++++++-------------- data/codebook.rda |binary data/correlates.rda |binary man/codebook.Rd | 4 ++-- man/correlates.Rd | 4 ++-- 10 files changed, 40 insertions(+), 37 deletions(-)
Title: A Tool for the Correlates of State Policy Project Data
Description: A tool that imports, subsets, visualizes, and exports the Correlates of State Policy Project dataset assembled by Marty P. Jordan and Matt Grossmann (2020) <http://ippsr.msu.edu/public-policy/correlates-state-policy>. The Correlates data contains over 2000 variables across more than 100 years that pertain to state politics and policy in the United States. Users with only a basic understanding of R can subset this data across multiple dimensions, export their search results, create map visualizations, export the citations associated with their searches, and more.
Author: Caleb Lucas (https://caleblucas.com/) and Joshua McCrain (http://joshuamccrain.com/)
Maintainer: Caleb Lucas <calebjlucas@gmail.com>
Diff between cspp versions 0.3.1 dated 2021-01-04 and 0.3.2 dated 2021-10-16
DESCRIPTION | 16 MD5 | 50 - NAMESPACE | 5 NEWS.md | 6 R/corr_plot.R |only R/generate_map.R | 8 R/get_cspp_data.R | 39 - R/get_network_data.R | 14 R/globals.R | 4 R/plot_panel.R | 18 R/zzz.R | 8 README.md | 529 ++++++++++-------- build/vignette.rds |binary inst/doc/cspp-vignette.R | 6 inst/doc/cspp-vignette.Rmd | 14 inst/doc/cspp-vignette.html | 846 +++++++++++------------------- man/corr_plot.Rd |only man/figures/README-unnamed-chunk-16-1.png |binary man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-18-1.png |binary man/figures/README-unnamed-chunk-19-1.png |binary man/figures/README-unnamed-chunk-20-1.png |binary man/figures/README-unnamed-chunk-21-1.png |binary man/figures/README-unnamed-chunk-26-1.png |only man/figures/README-unnamed-chunk-27-1.png |only man/generate_map.Rd | 4 man/plot_panel.Rd | 4 vignettes/cspp-vignette.Rmd | 14 28 files changed, 746 insertions(+), 839 deletions(-)
Title: Non-Ordered Vectors
Description: Functionality for manipulating values of associative
maps. Ordinary R vectors are unsuitable for working with values of
associative maps because elements of an R vector may be accessed by
reference to their location in the vector, but associative maps are
stored in arbitrary order. However, when associating keys with
values one needs both parts to be in 1-1 correspondence, so one
cannot dispense with the order entirely. The 'disordR' package
includes a single S4 class, disord. This class allows one to
perform only those operations appropriate for manipulating values of
associative maps and prevents any other operation (such as accessing
an element at a particular location). A useful heuristic is that
one is only allowed to access or modify a disord object using a
python list comprehension. The idea is to prevent ill-defined
operations on values (or keys) of associative maps, whose order is
undefined or at best implementation-specific, while allowing and
facilitating sensible operations. The package is needed for
development versions of 'mvp', 'hyper2', 'spray', 'clifford', and
'freealg'.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between disordR versions 0.0-7 dated 2021-08-05 and 0.0-8 dated 2021-10-16
DESCRIPTION | 6 ++-- MD5 | 17 ++++++----- R/disordR.R | 28 +++++++++++++------ README.md | 73 ++++++++++++++++++++++++++++---------------------- build/vignette.rds |binary inst/doc/disordR.Rmd | 10 ++++-- inst/doc/disordR.html | 54 ++++++++++++++++++------------------ man/figures |only man/misc.Rd | 6 ++++ vignettes/disordR.Rmd | 10 ++++-- 10 files changed, 121 insertions(+), 83 deletions(-)
Title: Raster Time Series Analysis
Description: This framework aims to provide classes and methods for manipulating and processing of raster time series data (e.g. a time series of satellite images).
Author: Babak Naimi
Maintainer: Babak Naimi <naimi.b@gmail.com>
Diff between rts versions 1.0-49 dated 2019-02-03 and 1.1-3 dated 2021-10-16
DESCRIPTION | 14 +-- MD5 | 71 ++++++++------- NAMESPACE | 6 + R/AAAClasses.R | 12 ++ R/ModisDownload.R | 154 ++++++++++++++++++++++----------- R/VHIdownload.R | 37 +++++-- R/apply.R | 157 ++++++++++++++++++++------------- R/cellFrom.R | 44 +++++++-- R/endpoints.R | 39 ++++---- R/extract.R | 175 ++++++++++++++++++++++++++++++++++--- R/index.R | 11 ++ R/period.R | 77 +++++++++++++--- R/plot.R | 23 ++++ R/rts.R | 166 ++++++++++++++++++++--------------- R/show.R | 165 +++++++++++++++++++++++------------ R/subset.R | 33 ++++++- R/utils.R |only R/writerts.R | 195 +++++++++++++++++++++++++++--------------- build |only inst/doc |only inst/external/ndvi/ndvi.grd | 52 +++++------ man/ModisDownload.Rd | 30 +++--- man/RasterStackBrick-class.Rd | 3 man/VHPdownload.Rd | 4 man/apply.monthly.Rd | 6 + man/cellFromXY.Rd | 26 +++-- man/endpoints.Rd | 2 man/extract.Rd | 4 man/extractIndex.Rd | 5 + man/index.Rd | 2 man/period.apply.Rd | 1 man/plot.Rd | 1 man/read.rts.Rd | 10 +- man/rts.Rd | 10 +- man/subset.Rd | 1 man/subsetIndex.Rd | 1 man/write.rts.Rd | 7 + vignettes |only 38 files changed, 1067 insertions(+), 477 deletions(-)
Title: R-Based Visualization Techniques for Task-Based Applications
Description: Performance analysis workflow that combines the power of the R
language (and the tidyverse realm) and many auxiliary tools to
provide a consistent, flexible, extensible, fast, and versatile
framework for the performance analysis of task-based applications
that run on top of the StarPU runtime (with its MPI (Message
Passing Interface) layer for multi-node support). Its goal is to
provide a fruitful prototypical environment to conduct performance
analysis hypothesis-checking for task-based applications that run
on heterogeneous (multi-GPU, multi-core) multi-node HPC
(High-performance computing) platforms.
Author: Lucas Mello Schnorr [aut, ths]
(<https://orcid.org/0000-0003-4828-9942>),
Vinicius Garcia Pinto [aut] (<https://orcid.org/0000-0002-6845-9358>),
Lucas Leandro Nesi [aut, cre] (<https://orcid.org/0000-0001-8874-1839>),
Marcelo Cogo Miletto [aut] (<https://orcid.org/0000-0002-1191-3863>),
Guilherme Alles [ctb],
Arnaud Legrand [ctb],
Luka Stanisic [ctb],
Rémy Drouilhet [ctb]
Maintainer: Lucas Leandro Nesi <lucas.nesi@inf.ufrgs.br>
Diff between starvz versions 0.5.0 dated 2021-03-25 and 0.6.0 dated 2021-10-16
DESCRIPTION | 8 ++-- MD5 | 46 +++++++++++++------------ R/RcppExports.R | 17 ++++++++- R/phase1.R | 56 ++++++++++++++++++++++--------- R/phase1_parse_csv.R | 49 +++++++++++++++++++-------- R/phase2.R | 11 ++++-- R/phase2_aggregation.R | 26 ++++++++++---- R/phase2_applications.R | 5 +- R/phase2_config.R | 7 ++- R/phase2_gaps.R | 2 + R/phase2_memory.R | 5 ++ R/phase2_states_chart.R | 20 +++++++---- R/phase2_util.R | 25 +++++++++++++- R/read_functions.R | 49 +++++++++++++++------------ R/write_functions.R | 29 ++++++++-------- inst/tools/phase1-workflow.sh | 75 +++++++++++++++++++++++++----------------- inst/tools/starvz | 4 +- man/panel_st_agg_dynamic.Rd | 5 ++ man/panel_st_agg_static.Rd | 6 +++ man/starvz_phase1.Rd | 2 - man/starvz_read_config.Rd | 6 ++- src/RcppExports.cpp | 42 +++++++++++++++++++++++ src/lastest.cpp |only src/separate_res.cpp |only tests/testthat/test_lu.R | 4 +- 25 files changed, 344 insertions(+), 155 deletions(-)
Title: Single Cell Mapper
Description: The single cell mapper (scMappR) R package contains a suite of bioinformatic tools that provide experimentally relevant cell-type specific information to a list of differentially expressed genes (DEG). The function "scMappR_and_pathway_analysis" reranks DEGs to generate cell-type specificity scores called cell-weighted fold-changes. Users input a list of DEGs, normalized counts, and a signature matrix into this function. scMappR then re-weights bulk DEGs by cell-type specific expression from the signature matrix, cell-type proportions from RNA-seq deconvolution and the ratio of cell-type proportions between the two conditions to account for changes in cell-type proportion. With cwFold-changes calculated, scMappR uses two approaches to utilize cwFold-changes to complete cell-type specific pathway analysis. The "process_dgTMatrix_lists" function in the scMappR package contains an automated scRNA-seq processing pipeline where users input scRNA-seq count data, which is made compatible for scMappR and other R packages that analyze scRNA-seq data. We further used this to store hundreds up regularly updating signature matrices. The functions "tissue_by_celltype_enrichment", "tissue_scMappR_internal", and "tissue_scMappR_custom" combine these consistently processed scRNAseq count data with gene-set enrichment tools to allow for cell-type marker enrichment of a generic gene list (e.g. GWAS hits). Reference: Sokolowski,D.J., Faykoo-Martinez,M., Erdman,L., Hou,H., Chan,C., Zhu,H., Holmes,M.M., Goldenberg,A. and Wilson,M.D. (2021) Single-cell mapper (scMappR): using scRNA-seq to infer cell-type specificities of differentially expressed genes. NAR Genomics and Bioinformatics. 3(1). Iqab011. <doi:10.1093/nargab/lqab011>.
Author: Dustin Sokolowski [aut, cre],
Mariela Faykoo-Martinez [aut],
Lauren Erdman [aut],
Houyun Hou [aut],
Cadia Chan [aut],
Helen Zhu [aut],
Melissa Holmes [aut],
Anna Goldenberg [aut],
Michael Wilson [aut]
Maintainer: Dustin Sokolowski <dustin.sokolowski@sickkids.ca>
Diff between scMappR versions 1.0.2 dated 2021-05-14 and 1.0.7 dated 2021-10-16
DESCRIPTION | 6 +-- MD5 | 20 +++++------ R/compare_deconvolution_methods.R | 61 ++++++++++++++++++++++++++++++++--- R/cwFoldChange_evaluate.R | 12 +++++- R/process_dgTMatrix_lists.R | 3 + README.md | 2 - inst/doc/scMappR_Vignette.Rmd | 6 +++ inst/doc/scMappR_Vignette.html | 15 +++++++- man/compare_deconvolution_methods.Rd | 7 ++-- man/process_dgTMatrix_lists.Rd | 3 + vignettes/scMappR_Vignette.Rmd | 6 +++ 11 files changed, 113 insertions(+), 28 deletions(-)
Title: An Extended Mixed-Effects Framework for Meta-Analysis
Description: A collection of functions to perform various meta-analytical models
through a unified mixed-effects framework, including standard univariate
fixed and random-effects meta-analysis and meta-regression, and non-standard
extensions such as multivariate, multilevel, longitudinal, and dose-response
models.
Author: Antonio Gasparrini [aut, cre],
Francesco Sera [aut]
Maintainer: Antonio Gasparrini <antonio.gasparrini@lshtm.ac.uk>
Diff between mixmeta versions 1.1.3 dated 2021-06-12 and 1.2.0 dated 2021-10-16
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 8 ++++++++ R/mixmeta.R | 2 +- inst/NEWS | 8 ++++++++ 5 files changed, 25 insertions(+), 9 deletions(-)
Title: The MBESS R Package
Description: Implements methods that are useful in designing research studies and analyzing data, with
particular emphasis on methods that are developed for or used within the behavioral,
educational, and social sciences (broadly defined). That being said, many of the methods
implemented within MBESS are applicable to a wide variety of disciplines. MBESS has a
suite of functions for a variety of related topics, such as effect sizes, confidence intervals
for effect sizes (including standardized effect sizes and noncentral effect sizes), sample size
planning (from the accuracy in parameter estimation [AIPE], power analytic, equivalence, and
minimum-risk point estimation perspectives), mediation analysis, various properties of
distributions, and a variety of utility functions. MBESS (pronounced 'em-bes') was originally
an acronym for 'Methods for the Behavioral, Educational, and Social Sciences,' but MBESS became
more general and now contains methods applicable and used in a wide variety of fields and is an
orphan acronym, in the sense that what was an acronym is now literally its name. MBESS has
greatly benefited from others, see <https://www3.nd.edu/~kkelley/site/MBESS.html> for a detailed
list of those that have contributed and other details.
Author: Ken Kelley [aut, cre]
Maintainer: Ken Kelley <kkelley@nd.edu>
Diff between MBESS versions 4.8.0 dated 2020-08-05 and 4.8.1 dated 2021-10-16
DESCRIPTION | 25 +++++++++++++------------ MD5 | 6 +++--- R/ci.reliability.R | 18 +++++++++++------- man/MBESS-package.Rd | 20 ++++++++++---------- 4 files changed, 37 insertions(+), 32 deletions(-)
Title: R Bindings for the Hong Kong Legislative Council API
Description: Fetching data from Hong Kong Legislative Council's open data API in R.
Functions correspond to the data endpoints of the API.
Documentations of supported API databases:
<https://www.legco.gov.hk/odata/english/billsdb.html>,
<https://www.legco.gov.hk/odata/english/hansard-db.html>,
<https://www.legco.gov.hk/odata/english/attendance-db.html>,
<https://www.legco.gov.hk/odata/english/schedule-db.html> and
<https://www.legco.gov.hk/odata/english/vrdb.html>.
Author: Elgar Teo
Maintainer: Elgar Teo <elgarteo@connect.hku.hk>
Diff between legco versions 0.1.3 dated 2020-03-31 and 0.1.4 dated 2021-10-16
DESCRIPTION | 12 - MD5 | 92 +++++++----- NAMESPACE | 9 + NEWS.md |only R/addresses.R | 4 R/all_bills.R | 10 - R/attendance.R | 8 - R/bills.R | 6 R/committee.R | 8 - R/db-man.R | 23 +++ R/hansard.R | 2 R/legco-package.R | 10 - R/legco_api.R | 32 ++-- R/meeting.R | 8 - R/meeting_committee.R | 6 R/member.R | 4 R/member_term.R | 4 R/membership.R | 12 - R/motions.R | 6 R/petitions.R | 4 R/questions.R | 4 R/rundown.R | 10 - R/search_committee.R |only R/search_member.R |only R/search_question.R |only R/search_voting_record.R |only R/session.R | 6 R/speakers.R | 2 R/statements.R | 4 R/subjects.R | 6 R/summoning_bells.R | 6 R/term.R | 4 R/utils-misc.R | 20 +- R/voting_record.R | 24 +-- R/voting_results.R | 6 README.md | 15 -- build/vignette.rds |binary inst/doc/attn.html | 234 ++++---------------------------- inst/doc/bills.html | 228 +++---------------------------- inst/doc/hansard.html | 320 ++++++++++---------------------------------- inst/doc/introduction.html | 288 +++++++-------------------------------- inst/doc/schedule.html | 272 ++++++------------------------------- inst/doc/voting.Rmd | 4 inst/doc/voting.html | 248 +++++----------------------------- man/comp-fun.Rd |only man/legco-package.Rd | 15 +- man/rundown.Rd | 2 man/search_committee.Rd |only man/search_member.Rd |only man/search_question.Rd |only man/search_voting_record.Rd |only vignettes/voting.Rmd | 4 52 files changed, 498 insertions(+), 1484 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>,
@strengejacke),
Dominique Makowski [aut, ctb] (<https://orcid.org/0000-0001-5375-9967>,
@Dom_Makowski),
Indrajeet Patil [aut, ctb] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets),
Philip Waggoner [aut, ctb] (<https://orcid.org/0000-0002-7825-7573>),
Mattan S. Ben-Shachar [aut, ctb]
(<https://orcid.org/0000-0002-4287-4801>),
Brenton M. Wiernik [aut] (<https://orcid.org/0000-0001-9560-6336>,
@bmwiernik),
Vincent Arel-Bundock [ctb] (<https://orcid.org/0000-0003-2042-7063>),
Alex Hayes [rev] (<https://orcid.org/0000-0002-4985-5160>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between insight versions 0.14.4 dated 2021-09-02 and 0.14.5 dated 2021-10-16
DESCRIPTION | 16 MD5 | 303 +++---- NAMESPACE | 18 NEWS.md | 46 + R/check_if_installed.R | 30 R/clean_names.R | 2 R/compute_variances.R | 2 R/find_predictors.R | 33 R/find_transformation.R |only R/find_variables.R | 27 R/format_table.R | 5 R/get_df.R | 60 + R/get_modelmatrix.R | 37 R/get_parameters_bayesian.R | 51 - R/get_parameters_emmeans.R | 4 R/get_predicted.R | 522 ++++++++++-- R/get_predicted_ci.R | 62 - R/get_predicted_methods.R | 15 R/get_priors.R | 58 - R/get_response.R | 22 R/get_statistic.R | 125 --- R/get_transformation.R |only R/get_varcov.R | 15 R/model_info.R | 151 +-- R/utils_get_data.R | 2 README.md | 4 build/partial.rdb |binary inst/doc/display.html | 144 +-- man/check_if_installed.Rd | 6 man/figures/logo.png |binary man/find_transformation.Rd |only man/find_variables.Rd | 25 man/get_df.Rd | 8 man/get_predicted.Rd | 45 - man/get_predicted_ci.Rd | 13 man/get_transformation.Rd |only man/model_info.Rd | 145 +-- tests/testthat/_snaps |only tests/testthat/helper-requiet.R |only tests/testthat/test-BayesFactorBF.R | 2 tests/testthat/test-FE-formula.R | 2 tests/testthat/test-GLMMadaptive.R | 2 tests/testthat/test-Gam2.R | 6 tests/testthat/test-LORgee.R | 6 tests/testthat/test-MCMCglmm.R | 6 tests/testthat/test-afex_aov.R | 2 tests/testthat/test-all_models_equal.R | 2 tests/testthat/test-aovlist.R | 6 tests/testthat/test-backticks.R | 2 tests/testthat/test-betabin.R | 2 tests/testthat/test-betareg.R | 6 tests/testthat/test-bife.R |only tests/testthat/test-bigglm.R | 4 tests/testthat/test-blmer.R | 6 tests/testthat/test-brms.R | 41 - tests/testthat/test-censReg.R | 8 tests/testthat/test-cgam.R | 6 tests/testthat/test-check_if_installed.R | 2 tests/testthat/test-clean_names.R | 2 tests/testthat/test-clm.R | 33 tests/testthat/test-clm2.R | 8 tests/testthat/test-clmm.R | 6 tests/testthat/test-coxme.R | 14 tests/testthat/test-coxph.R | 8 tests/testthat/test-cpglmm.R | 6 tests/testthat/test-crch.R | 6 tests/testthat/test-crq.R | 6 tests/testthat/test-data.frame.R | 2 tests/testthat/test-ellipses_info.R | 2 tests/testthat/test-emmeans.R |only tests/testthat/test-epiR.R | 6 tests/testthat/test-export_table.R | 2 tests/testthat/test-feis.R | 6 tests/testthat/test-felm.R | 6 tests/testthat/test-find_formula-data.R | 2 tests/testthat/test-find_predictor_nested_re.R | 2 tests/testthat/test-find_random.R | 2 tests/testthat/test-find_smooth.R | 6 tests/testthat/test-find_terms.R | 2 tests/testthat/test-fixest.R | 417 +++++----- tests/testthat/test-format.R | 2 tests/testthat/test-format_table_ci.R | 2 tests/testthat/test-formatting.R | 2 tests/testthat/test-gam.R | 28 tests/testthat/test-gamlss.R | 24 tests/testthat/test-gamm.R | 16 tests/testthat/test-gamm4.R | 2 tests/testthat/test-gbm.R | 2 tests/testthat/test-gee.R | 10 tests/testthat/test-geeglm.R | 6 tests/testthat/test-get_auxiliary.R | 2 tests/testthat/test-get_data.R | 2 tests/testthat/test-get_deviance.R | 2 tests/testthat/test-get_loglikelihood.R | 18 tests/testthat/test-get_predicted.R | 854 +++++++++++---------- tests/testthat/test-get_priors.R | 2 tests/testthat/test-get_residuals.R | 2 tests/testthat/test-get_variance.R | 2 tests/testthat/test-get_weights.R | 2 tests/testthat/test-glm.R | 6 tests/testthat/test-glmmTMB.R | 41 - tests/testthat/test-glmrob_base.R | 6 tests/testthat/test-gls.R | 6 tests/testthat/test-gmnl.R | 24 tests/testthat/test-has_intercept.R | 2 tests/testthat/test-htest.R | 2 tests/testthat/test-hurdle.R | 6 tests/testthat/test-is_nullmodel.R | 2 tests/testthat/test-iv_robust.R | 6 tests/testthat/test-ivreg.R | 6 tests/testthat/test-ivreg_AER.R | 6 tests/testthat/test-lm.R | 6 tests/testthat/test-lm_robust.R | 6 tests/testthat/test-lme.R | 8 tests/testthat/test-lmer.R | 6 tests/testthat/test-lmrob_base.R | 6 tests/testthat/test-lmtest.R | 6 tests/testthat/test-logistf.R | 6 tests/testthat/test-metaBMA.R | 2 tests/testthat/test-mixed.R | 8 tests/testthat/test-mlogit.R | 6 tests/testthat/test-model_data.R | 8 tests/testthat/test-model_info.R | 2 tests/testthat/test-multinom.R | 50 + tests/testthat/test-mvrstanarm.R | 6 tests/testthat/test-n_parameters_rank-deficiency.R | 2 tests/testthat/test-namespace.R | 6 tests/testthat/test-negbin.R | 2 tests/testthat/test-nlmer.R | 2 tests/testthat/test-offset.R | 6 tests/testthat/test-ols.R | 6 tests/testthat/test-panelr.R | 6 tests/testthat/test-plm.R | 2 tests/testthat/test-polr.R | 26 tests/testthat/test-proportion_response.R |only tests/testthat/test-psm.R | 2 tests/testthat/test-r3_4.R | 2 tests/testthat/test-response_data2.R | 6 tests/testthat/test-rlm.R |only tests/testthat/test-rlmer.R | 4 tests/testthat/test-rms.R | 6 tests/testthat/test-rq.R | 6 tests/testthat/test-rqss.R | 8 tests/testthat/test-rstanarm.R | 8 tests/testthat/test-spatial.R | 2 tests/testthat/test-speedglm.R | 8 tests/testthat/test-speedlm.R | 6 tests/testthat/test-standardize_names.R | 8 tests/testthat/test-survey.R | 6 tests/testthat/test-survfit.R | 6 tests/testthat/test-survreg.R | 6 tests/testthat/test-tidymodels.R | 6 tests/testthat/test-tobit.R | 2 tests/testthat/test-truncreg.R | 8 tests/testthat/test-vgam.R | 2 tests/testthat/test-vglm.R | 4 tests/testthat/test-zeroinfl.R | 6 157 files changed, 2369 insertions(+), 1671 deletions(-)
Title: Statistical Modelling for Plant Size Distributions
Description: Developed for the following tasks. 1 ) Computing the probability density function,
cumulative distribution function, random generation, and estimating the parameters
of the eleven mixture models. 2 ) Point estimation of the parameters of two -
parameter Weibull distribution using twelve methods and three - parameter Weibull
distribution using nine methods. 3 ) The Bayesian inference for the three -
parameter Weibull distribution. 4 ) Estimating parameters of the three - parameter
Birnbaum - Saunders, generalized exponential, and Weibull distributions fitted to
grouped data using three methods including approximated maximum likelihood,
expectation maximization, and maximum likelihood. 5 ) Estimating the parameters
of the gamma, log-normal, and Weibull mixture models fitted to the grouped data
through the EM algorithm, 6 ) Estimating parameters of the nonlinear height curve
fitted to the height - diameter observation, 7 ) Estimating parameters, computing
probability density function, cumulative distribution function, and generating
realizations from gamma shape mixture model introduced by Venturini et al. (2008)
<doi:10.1214/07-AOAS156> , 8 ) The Bayesian inference, computing probability
density function, cumulative distribution function, and generating realizations
from four-parameter Johnson SB distribution, 9 ) Robust multiple linear regression
analysis when error term follows skewed t distribution, 10 ) Estimating
parameters of a given distribution fitted to grouped data using method of maximum
likelihood, and 11 ) Estimating parameters of the Johnson SB distribution through
the Bayesian, method of moment, conditional maximum likelihood, and two - percentile
method.
Author: Mahdi Teimouri
Maintainer: Mahdi Teimouri <teimouri@aut.ac.ir>
Diff between ForestFit versions 0.7.1 dated 2021-02-06 and 1.2.3 dated 2021-10-16
ForestFit-0.7.1/ForestFit/data/DBH.txt |only ForestFit-0.7.1/ForestFit/data/HW.txt |only ForestFit-0.7.1/ForestFit/data/SW.txt |only ForestFit-1.2.3/ForestFit/DESCRIPTION | 14 - ForestFit-1.2.3/ForestFit/MD5 | 13 - ForestFit-1.2.3/ForestFit/R/ForestFit.R | 349 ++++++++++++++++++--------- ForestFit-1.2.3/ForestFit/data/DBH.txt.gz |only ForestFit-1.2.3/ForestFit/data/HW.txt.gz |only ForestFit-1.2.3/ForestFit/data/SW.txt.gz |only ForestFit-1.2.3/ForestFit/man/fitJSB.Rd |only ForestFit-1.2.3/ForestFit/man/fitbayesJSB.Rd | 6 11 files changed, 260 insertions(+), 122 deletions(-)
Title: Quantitative Support of Decision Making under Uncertainty
Description: Supporting the quantitative analysis of binary welfare based
decision making processes using Monte Carlo simulations. Decision support
is given on two levels: (i) The actual decision level is to choose between
two alternatives under probabilistic uncertainty. This package calculates
the optimal decision based on maximizing expected welfare. (ii) The meta
decision level is to allocate resources to reduce the uncertainty in the
underlying decision problem, i.e to increase the current information to
improve the actual decision making process. This problem is dealt with
using the Value of Information Analysis. The Expected Value of
Information for arbitrary prospective estimates can be calculated as
well as Individual Expected Value of Perfect Information.
The probabilistic calculations are done via Monte Carlo
simulations. This Monte Carlo functionality can be used on its own.
Author: Eike Luedeling [cre, aut] (University of Bonn),
Lutz Goehring [aut] (ICRAF and Lutz Goehring Consulting),
Katja Schiffers [aut] (University of Bonn),
Cory Whitney [aut] (University of Bonn),
Eduardo Fernandez [aut] (University of Bonn)
Maintainer: Eike Luedeling <eike@eikeluedeling.com>
Diff between decisionSupport versions 1.106 dated 2021-03-01 and 1.107 dated 2021-10-16
DESCRIPTION | 12 MD5 | 29 - NAMESPACE | 1 R/decisionSupport-package.R | 2 R/plot_cashflow.R | 39 - R/plot_evpi.R | 20 R/scenario_mc.R |only README.md | 6 build/partial.rdb |binary build/vignette.rds |binary inst/doc/example_decision_function.html | 645 +++++++++--------------- inst/doc/wildfire_example.html | 837 ++++++++++++-------------------- man/decisionSupport-package.Rd | 2 man/plot_cashflow.Rd | 3 man/plsr.mcSimulation.Rd | 13 man/scenario_mc.Rd |only vignettes/decisionSupport.png |only 17 files changed, 643 insertions(+), 966 deletions(-)
More information about decisionSupport at CRAN
Permanent link
Title: Censored Spatial Models
Description: It fits linear regression models for censored spatial data. It provides different estimation methods as the SAEM (Stochastic Approximation of Expectation Maximization) algorithm and seminaive that uses Kriging prediction to estimate the response at censored locations and predict new values at unknown locations. It also offers graphical tools for assessing the fitted model. More details can be found in Ordonez et al. (2018) <doi:10.1016/j.spasta.2017.12.001>.
Author: Alejandro Ordonez, Christian E. Galarza, Victor H. Lachos
Maintainer: Alejandro Ordonez <ordonezjosealejandro@gmail.com>
Diff between CensSpatial versions 2.58 dated 2020-05-04 and 2.59 dated 2021-10-16
DESCRIPTION | 16 ++++++++-------- MD5 | 6 +++--- man/localinfmeas.Rd | 2 +- man/summary.SAEMSpatialCens.Rd | 2 +- 4 files changed, 13 insertions(+), 13 deletions(-)
Title: Functions to Calculate Optimal Fourth Down Decisions in the
National Football League
Description: A set of functions to estimate outcomes of fourth down
plays in the National Football League and obtain fourth down plays
from <https://www.nfl.com/> and <https://www.espn.com/>.
Author: Ben Baldwin [aut, cre, cph],
Sebastian Carl [ctb]
Maintainer: Ben Baldwin <bbaldwin206@gmail.com>
Diff between nfl4th versions 1.0.0 dated 2021-03-17 and 1.0.1 dated 2021-10-16
DESCRIPTION | 16 +- MD5 | 16 +- NEWS.md | 21 +-- R/helpers.R | 2 R/silence_tidy_eval_notes.R | 254 ++++++++++++++++++++++---------------------- R/wrapper.R | 40 +++++- README.md | 19 ++- man/load_4th_pbp.Rd | 4 man/nfl4th-package.Rd | 4 9 files changed, 201 insertions(+), 175 deletions(-)
Title: Presentation-Ready Data Summary and Analytic Result Tables
Description: Creates presentation-ready tables summarizing data
sets, regression models, and more. The code to create the tables is
concise and highly customizable. Data frames can be summarized with
any function, e.g. mean(), median(), even user-written functions.
Regression models are summarized and include the reference rows for
categorical variables. Common regression models, such as logistic
regression and Cox proportional hazards regression, are automatically
identified and the tables are pre-filled with appropriate column
headers.
Author: Daniel D. Sjoberg [aut, cre] (<https://orcid.org/0000-0003-0862-2018>),
Michael Curry [aut] (<https://orcid.org/0000-0002-0261-4044>),
Joseph Larmarange [aut] (<https://orcid.org/0000-0001-7097-700X>),
Jessica Lavery [aut] (<https://orcid.org/0000-0002-2746-5647>),
Karissa Whiting [aut] (<https://orcid.org/0000-0002-4683-1868>),
Emily C. Zabor [aut] (<https://orcid.org/0000-0002-1402-4498>),
Xing Bai [ctb],
Esther Drill [ctb] (<https://orcid.org/0000-0002-3315-4538>),
Jessica Flynn [ctb] (<https://orcid.org/0000-0001-8310-6684>),
Margie Hannum [ctb] (<https://orcid.org/0000-0002-2953-0449>),
Stephanie Lobaugh [ctb],
Gustavo Zapata Wainberg [ctb] (<https://orcid.org/0000-0002-2524-3637>)
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between gtsummary versions 1.4.2 dated 2021-07-13 and 1.5.0 dated 2021-10-16
DESCRIPTION | 48 MD5 | 295 NAMESPACE | 24 NEWS.md | 1494 - R/add_ci.R |only R/add_difference.R | 79 R/add_global_p.R | 84 R/add_n.R | 2 R/add_nevent.R | 2 R/add_overall.R | 101 R/add_p.R | 54 R/add_q.R | 24 R/add_significance_stars.R | 2 R/add_stat.R | 60 R/add_vif.R | 26 R/as_flex_table.R | 15 R/as_gt.R | 16 R/as_hux_table.R | 13 R/as_kable_extra.R | 11 R/assert_package.R |only R/combine_terms.R | 1 R/custom_tidiers.R | 109 R/deprecated.R | 45 R/inline_text.R | 171 R/modify.R | 5 R/modify_cols_merge.R |only R/modify_column_hide.R | 2 R/modify_fmt_fun.R | 2 R/plot.R | 18 R/print.R | 2 R/reexport.R | 5 R/separate_p_footnotes.R |only R/set_gtsummary_theme.R | 2 R/style_sigfig.R | 6 R/syntax.R |only R/sysdata.rda |binary R/tbl_butcher.R |only R/tbl_continuous.R |only R/tbl_cross.R | 2 R/tbl_custom_summary.R |only R/tbl_regression.R | 9 R/tbl_regression_methods.R | 6 R/tbl_split.R |only R/tbl_strata.R | 46 R/tbl_summary.R | 16 R/tbl_survfit.R | 36 R/tbl_svysummary.R | 2 R/tbl_uvregression.R | 1 R/tests.R | 14 R/theme_gtsummary.R | 2 R/utils-add_p.R | 21 R/utils-add_p_tests.R | 156 R/utils-misc.R | 33 R/utils-tbl_custom_summary.R |only R/utils-tbl_summary.R | 19 README.md | 81 build/gtsummary.pdf |30234 +++++++++++++++++----------- build/vignette.rds |binary inst/CITATION |only inst/WORDLIST | 8 inst/doc/gallery.R | 10 inst/doc/gallery.Rmd | 12 inst/doc/gallery.html | 1244 - inst/doc/gtsummary_definition.R | 95 inst/doc/gtsummary_definition.Rmd | 110 inst/doc/gtsummary_definition.html | 2782 ++ inst/doc/inline_text.html | 228 inst/doc/rmarkdown.Rmd | 4 inst/doc/rmarkdown.html | 289 inst/doc/tbl_regression.html | 608 inst/doc/tbl_summary.html | 1220 - inst/doc/themes.html | 461 man/add_ci.Rd |only man/add_difference.Rd | 2 man/add_glance.Rd | 2 man/add_global_p.Rd | 38 man/add_n.tbl_summary.Rd | 8 man/add_n.tbl_survfit.Rd | 4 man/add_nevent.tbl_survfit.Rd | 4 man/add_overall.Rd | 13 man/add_p.tbl_summary.Rd | 5 man/add_p.tbl_survfit.Rd | 6 man/add_p.tbl_svysummary.Rd | 5 man/add_q.Rd | 38 man/add_stat.Rd | 18 man/add_stat_label.Rd | 10 man/add_vif.Rd | 24 man/as_flex_table.Rd | 15 man/as_gt.Rd | 11 man/as_hux_table.Rd | 13 man/as_kable_extra.Rd | 11 man/assert_package.Rd |only man/bold_italicize_labels_levels.Rd | 11 man/combine_terms.Rd | 4 man/continuous_summary.Rd |only man/custom_tidiers.Rd | 57 man/deprecated.Rd | 21 man/figures/README-tbl_merge_ex1-1.png |binary man/figures/add_ci_ex1.png |only man/figures/add_ci_ex2.png |only man/figures/add_prop_ci_ex1.png |only man/figures/add_prop_ci_ex2.png |only man/figures/continuous_summary_ex1.png |only man/figures/modify_cols_merge_ex1.png |only man/figures/modify_cols_merge_ex2.png |only man/figures/proportion_summary_ex1.png |only man/figures/ratio_summary_ex1.png |only man/figures/separate_p_footnotes_ex1.png |only man/figures/tbl_continuous_ex1.png |only man/figures/tbl_continuous_ex2.png |only man/figures/tbl_custom_summary_ex1.png |only man/figures/tbl_custom_summary_ex2.png |only man/figures/tbl_custom_summary_ex3.png |only man/gtsummary-package.Rd | 18 man/inline_text.tbl_cross.Rd | 2 man/inline_text.tbl_regression.Rd | 4 man/inline_text.tbl_summary.Rd | 5 man/inline_text.tbl_survfit.Rd | 7 man/inline_text.tbl_uvregression.Rd | 2 man/modify.Rd | 16 man/modify_cols_merge.Rd |only man/modify_column_hide.Rd | 3 man/modify_fmt_fun.Rd | 3 man/modify_table_body.Rd | 1 man/modify_table_styling.Rd | 1 man/plot.Rd | 16 man/proportion_summary.Rd |only man/ratio_summary.Rd |only man/reexports.Rd | 3 man/separate_p_footnotes.Rd |only man/set_gtsummary_theme.Rd | 2 man/style_sigfig.Rd | 11 man/syntax.Rd |only man/tbl_butcher.Rd |only man/tbl_continuous.Rd |only man/tbl_custom_summary.Rd |only man/tbl_merge.Rd | 16 man/tbl_regression.Rd | 17 man/tbl_regression_methods.Rd | 2 man/tbl_split.Rd |only man/tbl_stack.Rd | 16 man/tbl_strata.Rd | 82 man/tbl_summary.Rd | 16 man/tbl_survfit.Rd | 8 man/tbl_survfit_errors.Rd | 6 man/tbl_svysummary.Rd | 11 man/tbl_uvregression.Rd | 17 man/tests.Rd | 14 man/theme_gtsummary.Rd | 2 tests/testthat/test-add_ci.R |only tests/testthat/test-add_difference.R | 76 tests/testthat/test-add_p.tbl_summary.R | 119 tests/testthat/test-as_flex_table.R | 4 tests/testthat/test-as_hux_table.R | 4 tests/testthat/test-as_kable.R | 4 tests/testthat/test-as_kable_extra.R | 4 tests/testthat/test-combine_terms.R | 1 tests/testthat/test-custom_tidiers.R | 9 tests/testthat/test-inline_text.R | 57 tests/testthat/test-separate_p_footnotes.R |only tests/testthat/test-tbl_continuous.R |only tests/testthat/test-tbl_custom_summary.R |only tests/testthat/test-tbl_split.R |only tests/testthat/test-tbl_summary.R | 17 tests/testthat/test-tbl_survfit.R | 5 tests/testthat/test-tbl_uvregression.R | 1 tests/testthat/test-vetted_models-survreg.R | 1 vignettes/gallery.Rmd | 12 vignettes/gtsummary_definition.Rmd | 110 vignettes/rmarkdown.Rmd | 4 170 files changed, 26551 insertions(+), 14965 deletions(-)
Title: Sound Synthesis and Acoustic Analysis
Description: Performs parametric synthesis of sounds with harmonic and noise
components such as animal vocalizations or human voice. Also offers tools
for audio manipulation and acoustic analysis, including pitch tracking,
spectral analysis, audio segmentation, pitch and formant shifting, etc.
Includes four interactive web apps for synthesizing and annotating audio,
manually correcting pitch contours, and measuring formant frequencies.
Reference: Anikin (2019) <doi:10.3758/s13428-018-1095-7>.
Author: Andrey Anikin [aut, cre]
Maintainer: Andrey Anikin <rty.anik@rambler.ru>
Diff between soundgen versions 2.3.0 dated 2021-09-06 and 2.4.0 dated 2021-10-16
soundgen-2.3.0/soundgen/R/soundgenShiny.R |only soundgen-2.4.0/soundgen/DESCRIPTION | 15 soundgen-2.4.0/soundgen/MD5 | 96 soundgen-2.4.0/soundgen/NAMESPACE | 3 soundgen-2.4.0/soundgen/NEWS | 17 soundgen-2.4.0/soundgen/R/apps.R |only soundgen-2.4.0/soundgen/R/duration.R |only soundgen-2.4.0/soundgen/R/filters.R | 15 soundgen-2.4.0/soundgen/R/shiftPitch.R | 13 soundgen-2.4.0/soundgen/R/soundgen.R | 6 soundgen-2.4.0/soundgen/R/spectrogram.R | 234 - soundgen-2.4.0/soundgen/R/surprisal.R | 8 soundgen-2.4.0/soundgen/R/timeStretch.R |only soundgen-2.4.0/soundgen/R/utilities_pitch_postprocessing.R | 4 soundgen-2.4.0/soundgen/README.md | 32 soundgen-2.4.0/soundgen/THANKS | 5 soundgen-2.4.0/soundgen/inst/doc/acoustic_analysis.Rmd | 3 soundgen-2.4.0/soundgen/inst/doc/acoustic_analysis.html | 123 soundgen-2.4.0/soundgen/inst/doc/sound_generation.html | 1343 +++++----- soundgen-2.4.0/soundgen/inst/shiny/annotation_app |only soundgen-2.4.0/soundgen/inst/shiny/formant_app/server.R | 176 - soundgen-2.4.0/soundgen/inst/shiny/formant_app/www/formant_app.js | 7 soundgen-2.4.0/soundgen/inst/shiny/pitch_app/server.R | 38 soundgen-2.4.0/soundgen/inst/shiny/pitch_app/www/pitch_app.js | 19 soundgen-2.4.0/soundgen/man/annotation_app.Rd |only soundgen-2.4.0/soundgen/man/bandpass.Rd | 6 soundgen-2.4.0/soundgen/man/dot-bandpass.Rd | 4 soundgen-2.4.0/soundgen/man/dot-getDuration.Rd |only soundgen-2.4.0/soundgen/man/dot-shiftPitch.Rd | 6 soundgen-2.4.0/soundgen/man/dot-timeStretch.Rd |only soundgen-2.4.0/soundgen/man/figures/README-analysis-1.png |binary soundgen-2.4.0/soundgen/man/figures/README-synthsesis-1.png |binary soundgen-2.4.0/soundgen/man/figures/s.mp3 |binary soundgen-2.4.0/soundgen/man/filled.contour.mod.Rd | 2 soundgen-2.4.0/soundgen/man/formant_app.Rd | 2 soundgen-2.4.0/soundgen/man/getDuration.Rd |only soundgen-2.4.0/soundgen/man/pitch_app.Rd | 2 soundgen-2.4.0/soundgen/man/plotSpec.Rd | 3 soundgen-2.4.0/soundgen/man/shiftPitch.Rd | 5 soundgen-2.4.0/soundgen/man/soundgen_app.Rd | 2 soundgen-2.4.0/soundgen/man/spectrogram.Rd | 5 soundgen-2.4.0/soundgen/man/timeStretch.Rd |only soundgen-2.4.0/soundgen/vignettes/acoustic_analysis.Rmd | 3 43 files changed, 1172 insertions(+), 1025 deletions(-)
Title: Covariate-Adaptive Randomization for Clinical Trials
Description: Provides functions and command-line user interface to generate allocation sequence by covariate-adaptive randomization for clinical trials. The package currently supports six covariate-adaptive randomization procedures. Three hypothesis testing methods that are valid and robust under covariate-adaptive randomization are also available in the package to facilitate the inference for treatment effect under the included randomization procedures. Additionally, the package provides comprehensive and efficient tools to allow one to evaluate and compare the performance of randomization procedures and tests based on various criteria.
Author: Fuyi Tu [aut],
Xiaoqing Ye [aut, cre],
Wei Ma [aut, ths],
Feifang Hu [aut, ths]
Maintainer: Xiaoqing Ye <ye_xiaoq@163.com>
Diff between carat versions 2.0.1 dated 2021-10-02 and 2.0.2 dated 2021-10-16
DESCRIPTION | 8 +-- MD5 | 6 +- R/rand_completeData.R | 114 ++++++++++---------------------------------------- inst/NEWS.Rd | 6 ++ 4 files changed, 37 insertions(+), 97 deletions(-)
Title: Empirical Dynamic Modeling ('EDM')
Description: An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Author: Joseph Park [aut, cre] (<https://orcid.org/0000-0001-5411-1409>),
Cameron Smith [aut] (<https://orcid.org/0000-0003-0020-5607>),
George Sugihara [aut, ccp] (<https://orcid.org/0000-0002-2863-6946>),
Ethan Deyle [aut] (<https://orcid.org/0000-0001-8704-8434>),
Erik Saberski [ctb] (<https://orcid.org/0000-0002-6475-6187>),
Hao Ye [ctb] (<https://orcid.org/0000-0002-8630-1458>),
The Regents of the University of California [cph]
Maintainer: Joseph Park <JosephPark@IEEE.org>
Diff between rEDM versions 1.9.2 dated 2021-09-16 and 1.9.3 dated 2021-10-16
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 4 ++-- src/cppEDM/src/CCM.cc | 26 ++++++++++++-------------- src/cppEDM/src/Parameter.cc | 2 +- vignettes/rEDM-tutorial.html | 16 ++++++++-------- 6 files changed, 32 insertions(+), 34 deletions(-)
Title: Infrastructure for Ordering Objects Using Seriation
Description: Infrastructure for ordering objects with an implementation of several
seriation/sequencing/ordination techniques to reorder matrices, dissimilarity
matrices, and dendrograms. Also provides (optimally) reordered heatmaps,
color images and clustering visualizations like dissimilarity plots, and
visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) <doi:10.18637/jss.v025.i03>.
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Kurt Hornik [aut, cph],
Fionn Murtagh [ctb, cph],
Michael Brusco [ctb, cph],
Stephanie Stahl [ctb, cph],
Hans-Friedrich Koehn [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between seriation versions 1.3.0 dated 2021-06-30 and 1.3.1 dated 2021-10-16
DESCRIPTION | 11 +++++----- MD5 | 34 ++++++++++++++++++-------------- NAMESPACE | 3 ++ NEWS.md | 10 +++++++++ R/VAT.R | 8 +++---- R/ggVAT.R | 8 +++---- R/register_GA.R | 4 +-- R/register_optics.R |only R/register_tsne.R |only R/register_umap.R |only R/seriate.R | 16 +++++++-------- README.md | 17 +++++++++------- build/partial.rdb |binary inst/CITATION | 51 +++++++++++++++++++++++++++++------------------- inst/doc/seriation.pdf |binary man/VAT.Rd | 11 ++++++---- man/register_DendSer.Rd | 2 - man/register_GA.Rd | 2 - man/register_optics.Rd |only man/register_tsne.Rd |only man/register_umap.Rd |only 21 files changed, 107 insertions(+), 70 deletions(-)
Title: Random Subspace Ensemble Classification and Variable Screening
Description: We propose a general ensemble classification framework, RaSE algorithm, for the sparse classification problem. In RaSE algorithm, for each weak learner, some random subspaces are generated and the optimal one is chosen to train the model on the basis of some criterion. To be adapted to the problem, a novel criterion, ratio information criterion (RIC) is put up with based on Kullback-Leibler divergence. Besides minimizing RIC, multiple criteria can be applied, for instance, minimizing extended Bayesian information criterion (eBIC), minimizing training error, minimizing the validation error, minimizing the cross-validation error, minimizing leave-one-out error. There are various choices of base classifier, for instance, linear discriminant analysis, quadratic discriminant analysis, k-nearest neighbour, logistic regression, decision trees, random forest, support vector machines. RaSE algorithm can also be applied to do feature ranking, providing us the importance of each feature based on the selected percentage in multiple subspaces. RaSE framework can be extended to the general prediction framework, including both classification and regression. We can use the selected percentages of variables for variable screening. The latest version added the variable screening function for both regression and classification problems.
Author: Ye Tian [aut, cre] and Yang Feng [aut]
Maintainer: Ye Tian <ye.t@columbia.edu>
Diff between RaSEn versions 2.2.0 dated 2021-08-19 and 3.0.0 dated 2021-10-16
DESCRIPTION | 8 MD5 | 34 ++- NAMESPACE | 2 NEWS | 12 + R/RaSubset.R | 252 +++++++++++++++++++++++---- R/RaSubsetsc_c.R | 36 +-- R/RaSubsetsc_rg.R | 24 +- R/Rase.R | 420 +++++++++++++++++++++++++++++++--------------- R/predict.RaSE.R | 24 +- R/predict.super_RaSE.R |only R/print.super_RaSE.R |only inst/doc/RaSEn-demo.R | 9 inst/doc/RaSEn-demo.Rmd | 21 ++ inst/doc/RaSEn-demo.pdf |binary man/Rase.Rd | 59 +++++- man/predict.RaSE.Rd | 13 - man/predict.super_RaSE.Rd |only man/print.super_RaSE.Rd |only vignettes/RaSEn-demo.Rmd | 21 ++ vignettes/reference.bib | 9 20 files changed, 700 insertions(+), 244 deletions(-)
Title: Visualize the Climate Scenario Alignment of a Financial
Portfolio
Description: Create plots to visualize the alignment of a corporate
lending financial portfolio to climate change scenarios based on
climate indicators (production and emission intensities) across key
climate relevant sectors of the 'PACTA' methodology (Paris Agreement
Capital Transition Assessment; <https://2degrees-investing.org/>).
Financial institutions use 'PACTA' to study how their capital
allocation decisions align with climate change mitigation goals.
Author: Monika Furdyna [aut, ctr, cre]
(<https://orcid.org/0000-0002-3728-0646>),
Mauro Lepore [aut, ctr] (<https://orcid.org/0000-0002-1986-7988>),
Alex Axthelm [aut, ctr] (<https://orcid.org/0000-0001-8579-8565>),
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Monika Furdyna <monika.furdyna@gmail.com>
Diff between r2dii.plot versions 0.1.0 dated 2021-06-29 and 0.2.0 dated 2021-10-16
r2dii.plot-0.1.0/r2dii.plot/man/figures/README-unnamed-chunk-10-1.png |only r2dii.plot-0.1.0/r2dii.plot/man/figures/README-unnamed-chunk-11-1.png |only r2dii.plot-0.1.0/r2dii.plot/man/figures/README-unnamed-chunk-4-1.png |only r2dii.plot-0.1.0/r2dii.plot/man/figures/README-unnamed-chunk-5-1.png |only r2dii.plot-0.1.0/r2dii.plot/man/figures/README-unnamed-chunk-5-2.png |only r2dii.plot-0.1.0/r2dii.plot/man/figures/README-unnamed-chunk-6-1.png |only r2dii.plot-0.1.0/r2dii.plot/man/figures/README-unnamed-chunk-6-2.png |only r2dii.plot-0.1.0/r2dii.plot/man/figures/README-unnamed-chunk-6-3.png |only r2dii.plot-0.1.0/r2dii.plot/man/figures/README-unnamed-chunk-7-1.png |only r2dii.plot-0.1.0/r2dii.plot/man/figures/README-unnamed-chunk-8-1.png |only r2dii.plot-0.1.0/r2dii.plot/man/figures/README-unnamed-chunk-9-1.png |only r2dii.plot-0.1.0/r2dii.plot/tests/testthat/helper.R |only r2dii.plot-0.2.0/r2dii.plot/DESCRIPTION | 21 - r2dii.plot-0.2.0/r2dii.plot/MD5 | 84 ++-- r2dii.plot-0.2.0/r2dii.plot/NAMESPACE | 12 r2dii.plot-0.2.0/r2dii.plot/NEWS.md | 74 ++- r2dii.plot-0.2.0/r2dii.plot/R/imports.R | 8 r2dii.plot-0.2.0/r2dii.plot/R/plot_emission_intensity.R | 38 + r2dii.plot-0.2.0/r2dii.plot/R/plot_techmix.R | 49 +- r2dii.plot-0.2.0/r2dii.plot/R/plot_trajectory.R | 210 ++++++---- r2dii.plot-0.2.0/r2dii.plot/R/qplot_emission_intensity.R | 3 r2dii.plot-0.2.0/r2dii.plot/R/qplot_techmix.R | 19 r2dii.plot-0.2.0/r2dii.plot/R/qplot_trajectory.R | 16 r2dii.plot-0.2.0/r2dii.plot/R/scale_colour_r2dii.R |only r2dii.plot-0.2.0/r2dii.plot/R/scale_colour_r2dii_sector.R |only r2dii.plot-0.2.0/r2dii.plot/R/scale_colour_r2dii_tech.R |only r2dii.plot-0.2.0/r2dii.plot/R/theme_2dii.R | 1 r2dii.plot-0.2.0/r2dii.plot/R/to_title.R |only r2dii.plot-0.2.0/r2dii.plot/R/utils-tests.R |only r2dii.plot-0.2.0/r2dii.plot/R/utils.R | 93 ++-- r2dii.plot-0.2.0/r2dii.plot/README.md | 50 +- r2dii.plot-0.2.0/r2dii.plot/inst/WORDLIST | 5 r2dii.plot-0.2.0/r2dii.plot/man/figures/README-unnamed-chunk-2-1.png |binary r2dii.plot-0.2.0/r2dii.plot/man/figures/README-unnamed-chunk-3-1.png |binary r2dii.plot-0.2.0/r2dii.plot/man/plot_emission_intensity.Rd | 21 - r2dii.plot-0.2.0/r2dii.plot/man/plot_techmix.Rd | 32 + r2dii.plot-0.2.0/r2dii.plot/man/plot_trajectory.Rd | 30 + r2dii.plot-0.2.0/r2dii.plot/man/r2dii.plot-package.Rd | 9 r2dii.plot-0.2.0/r2dii.plot/man/scale_colour_r2dii.Rd |only r2dii.plot-0.2.0/r2dii.plot/man/scale_colour_r2dii_sector.Rd |only r2dii.plot-0.2.0/r2dii.plot/man/scale_colour_r2dii_tech.Rd |only r2dii.plot-0.2.0/r2dii.plot/man/to_title.Rd |only r2dii.plot-0.2.0/r2dii.plot/tests/testthat/_snaps/plot_techmix.md | 4 r2dii.plot-0.2.0/r2dii.plot/tests/testthat/_snaps/scale_colour_r2dii.md |only r2dii.plot-0.2.0/r2dii.plot/tests/testthat/_snaps/scale_colour_r2dii_sector.md |only r2dii.plot-0.2.0/r2dii.plot/tests/testthat/_snaps/scale_colour_r2dii_tech.md |only r2dii.plot-0.2.0/r2dii.plot/tests/testthat/test-plot_emission_intensity.R | 22 + r2dii.plot-0.2.0/r2dii.plot/tests/testthat/test-plot_techmix.R | 98 +++- r2dii.plot-0.2.0/r2dii.plot/tests/testthat/test-plot_trajectory.R | 72 +++ r2dii.plot-0.2.0/r2dii.plot/tests/testthat/test-qplot_emission_intensity.R | 5 r2dii.plot-0.2.0/r2dii.plot/tests/testthat/test-qplot_techmix.R | 3 r2dii.plot-0.2.0/r2dii.plot/tests/testthat/test-qplot_trajectory.R | 25 - r2dii.plot-0.2.0/r2dii.plot/tests/testthat/test-scale_colour_r2dii.R |only r2dii.plot-0.2.0/r2dii.plot/tests/testthat/test-scale_colour_r2dii_sector.R |only r2dii.plot-0.2.0/r2dii.plot/tests/testthat/test-scale_colour_r2dii_tech.R |only r2dii.plot-0.2.0/r2dii.plot/tests/testthat/test-theme_2dii.R | 3 r2dii.plot-0.2.0/r2dii.plot/tests/testthat/test-to_title.R |only 57 files changed, 701 insertions(+), 306 deletions(-)
Title: Frequency Distribution Tables, Histograms and Polygons
Description: Perform frequency distribution tables, associated histograms
and polygons from vector, data.frame and matrix objects for
numerical and categorical variables.
Author: Jos<e9> Cl<e1>udio Faria, Enio G. Jelihovschi and Ivan B. Allaman
Maintainer: Jos<e9> Cl<e1>udio Faria <joseclaudio.faria@gmail.com>
Diff between fdth versions 1.2-5 dated 2020-04-17 and 1.2-6 dated 2021-10-16
ChangeLog | 77 +++++++++-------- DESCRIPTION | 8 - INDEX | 5 - MD5 | 54 ++++++------ NAMESPACE | 2 R/fdt.data.frame.R | 10 +- R/fdt.default.R | 18 +++- R/fdt.matrix.R | 6 - R/fdt_cat.data.frame.R | 6 - R/fdt_cat.default.R | 2 R/fdt_cat.matrix.R | 2 R/make.fdt.multiple.R | 71 +++++++++++++++- README.md | 2 build/vignette.rds |binary inst/doc/latex_fdt.pdf |binary man/fdt.Rd | 146 +++++++++++++++++++-------------- man/fdt_cat.Rd | 48 +++++------ man/fdth-package.Rd | 140 ++++++++++++++++---------------- man/make.fdt.Rd | 54 ++++++------ man/mean.fdt.Rd | 4 man/median.fdt.Rd | 4 man/mfv.Rd | 14 +-- man/plot.Rd | 211 +++++++++++++++++++++++++------------------------ man/print.Rd | 84 ++++++++++--------- man/quantile.fdt.Rd | 27 +++++- man/sd.Rd | 4 man/summary.Rd | 82 +++++++++---------- man/var.Rd | 4 28 files changed, 611 insertions(+), 474 deletions(-)
Title: Evaluating Individualized Treatment Rules
Description: Provides various statistical methods for evaluating Individualized Treatment Rules under randomized data. The provided metrics include Population Average Value (PAV), Population Average Prescription Effect (PAPE), Area Under Prescription Effect Curve (AUPEC). It also provides the tools to analyze Individualized Treatment Rules under budget constraints. Detailed reference in Imai and Li (2019) <arXiv:1905.05389>.
Author: Michael Lingzhi Li [aut, cre],
Kosuke Imai [aut]
Maintainer: Michael Lingzhi Li <mlli@mit.edu>
Diff between evalITR versions 0.2.1 dated 2021-07-07 and 0.2.2 dated 2021-10-16
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/PAPDcv.R | 4 ++-- R/PAPEcv.R | 2 +- 5 files changed, 15 insertions(+), 11 deletions(-)