Tue, 19 Oct 2021

Package genSurv updated to version 1.0.4 with previous version 1.0.3 dated 2015-11-09

Title: Generating Multi-State Survival Data
Description: Generation of survival data with one (binary) time-dependent covariate. Generation of survival data arising from a progressive illness-death model.
Author: Artur Araujo [aut, cre] (<https://orcid.org/0000-0003-1419-4208>), Luis Meira-Machado [aut] (<https://orcid.org/0000-0002-8577-7665>), Susana Faria [aut] (<https://orcid.org/0000-0001-8014-9902>)
Maintainer: Artur Araujo <artur.stat@gmail.com>

Diff between genSurv versions 1.0.3 dated 2015-11-09 and 1.0.4 dated 2021-10-19

 DESCRIPTION            |   49 ++++++++++++++++++++-------
 MD5                    |   32 ++++++++++-------
 NAMESPACE              |    2 -
 R/dgBIV.R              |    4 +-
 README.md              |only
 build                  |only
 inst/CITATION          |   30 ++++++++++------
 inst/NEWS.Rd           |   88 +++++++++++++++++++++++++------------------------
 man/as.CMM.Rd          |   15 +++++---
 man/as.TDCM.Rd         |   15 +++++---
 man/as.THMM.Rd         |   15 +++++---
 man/genCMM.Rd          |   25 ++++++++-----
 man/genCPHM.Rd         |    7 +++
 man/genSurv-package.Rd |   38 +++++++++++----------
 man/genTDCM.Rd         |   39 ++++++++++++---------
 man/genTHMM.Rd         |   25 ++++++++-----
 src/Makevars           |only
 src/dgBIV.h            |only
 src/genSurv-win.def    |only
 src/init.c             |only
 20 files changed, 233 insertions(+), 151 deletions(-)

More information about genSurv at CRAN
Permanent link

Package digitalDLSorteR updated to version 0.1.1 with previous version 0.1.0 dated 2021-10-08

Title: Deconvolution of Bulk RNA-Seq Data Based on Deep Learning
Description: Deconvolution of bulk RNA-Seq data using context-specific deconvolution models based on Deep Neural Networks using scRNA-Seq data as input. These models are able to make accurate estimates of the cell composition of bulk RNA-Seq samples from the same context using the advances provided by Deep Learning and the meaningful information provided by scRNA-Seq data. See Torroja and Sanchez-Cabo (2019) <doi:10.3389/fgene.2019.00978> for more details.
Author: Diego Mañanes [aut, cre] (<https://orcid.org/0000-0001-7247-6794>), Carlos Torroja [aut] (<https://orcid.org/0000-0001-8914-3400>), Fatima Sanchez-Cabo [aut] (<https://orcid.org/0000-0003-1881-1664>)
Maintainer: Diego Mañanes <dmananesc@cnic.es>

Diff between digitalDLSorteR versions 0.1.0 dated 2021-10-08 and 0.1.1 dated 2021-10-19

 DESCRIPTION                      |    8 ++--
 MD5                              |   34 +++++++++---------
 NEWS.md                          |    9 ++++-
 R/dnnModel.R                     |    1 
 R/loadData.R                     |    1 
 R/simBulk.R                      |    4 +-
 R/simSingleCell.R                |   70 ++++++++++++++++++++++-----------------
 R/utils.R                        |    1 
 README.md                        |    8 +++-
 build/partial.rdb                |binary
 inst/doc/newModels.html          |   66 ++++++++++++++++++------------------
 man/estimateZinbwaveParams.Rd    |    1 
 man/generateBulkCellMatrix.Rd    |    1 
 man/loadSCProfiles.Rd            |    1 
 man/showProbPlot.Rd              |    1 
 man/simBulkProfiles.Rd           |    1 
 man/simSCProfiles.Rd             |    1 
 man/trainDigitalDLSorterModel.Rd |    1 
 18 files changed, 123 insertions(+), 86 deletions(-)

More information about digitalDLSorteR at CRAN
Permanent link

Package pricesensitivitymeter updated to version 1.2.2 with previous version 1.2.1 dated 2021-03-21

Title: Van Westendorp Price Sensitivity Meter Analysis
Description: An implementation of the van Westendorp Price Sensitivity Meter in R, which is a survey-based approach to analyze consumer price preferences and sensitivity (van Westendorp 1976, isbn:9789283100386).
Author: Max Alletsee [aut, cre]
Maintainer: Max Alletsee <max.alletsee@gmail.com>

Diff between pricesensitivitymeter versions 1.2.1 dated 2021-03-21 and 1.2.2 dated 2021-10-19

 pricesensitivitymeter-1.2.1/pricesensitivitymeter/NEWS                                         |only
 pricesensitivitymeter-1.2.2/pricesensitivitymeter/DESCRIPTION                                  |   11 
 pricesensitivitymeter-1.2.2/pricesensitivitymeter/MD5                                          |   23 +-
 pricesensitivitymeter-1.2.2/pricesensitivitymeter/NEWS.md                                      |only
 pricesensitivitymeter-1.2.2/pricesensitivitymeter/R/psm_plot.R                                 |   10 
 pricesensitivitymeter-1.2.2/pricesensitivitymeter/README.md                                    |  115 +++++-----
 pricesensitivitymeter-1.2.2/pricesensitivitymeter/build/vignette.rds                           |binary
 pricesensitivitymeter-1.2.2/pricesensitivitymeter/inst/doc/interpolation-in-small-samples.html |    8 
 pricesensitivitymeter-1.2.2/pricesensitivitymeter/inst/doc/using-weighted-data.Rmd             |    2 
 pricesensitivitymeter-1.2.2/pricesensitivitymeter/inst/doc/using-weighted-data.html            |   14 -
 pricesensitivitymeter-1.2.2/pricesensitivitymeter/inst/doc/visualizing-psm-results.html        |    8 
 pricesensitivitymeter-1.2.2/pricesensitivitymeter/man/figures                                  |only
 pricesensitivitymeter-1.2.2/pricesensitivitymeter/man/psm_plot.rd                              |    8 
 pricesensitivitymeter-1.2.2/pricesensitivitymeter/vignettes/using-weighted-data.Rmd            |    2 
 14 files changed, 106 insertions(+), 95 deletions(-)

More information about pricesensitivitymeter at CRAN
Permanent link

Package graphicalVAR updated to version 0.3 with previous version 0.2.4 dated 2020-10-23

Title: Graphical VAR for Experience Sampling Data
Description: Estimates within and between time point interactions in experience sampling data, using the Graphical vector autoregression model in combination with regularization. See also Epskamp, Waldorp, Mottus & Borsboom (2018) <doi:10.1080/00273171.2018.1454823>.
Author: Sacha Epskamp [aut, cre], Eren Asena [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>

Diff between graphicalVAR versions 0.2.4 dated 2020-10-23 and 0.3 dated 2021-10-19

 DESCRIPTION         |   15 ++++++++++-----
 MD5                 |   18 +++++++++---------
 NAMESPACE           |    1 +
 NEWS                |    7 +++++++
 R/Kappa.R           |    8 ++++++--
 R/Rothmana.R        |   42 ++++++++++++++++++++++++++++++------------
 R/dataPrep.R        |   49 ++++++++++++++++++++++++++++++-------------------
 R/graphicalVAR.R    |   12 ++++++++----
 R/simMLgvar.R       |    7 ++++---
 man/graphicalVAR.Rd |   29 ++++++++++++++++++++---------
 10 files changed, 125 insertions(+), 63 deletions(-)

More information about graphicalVAR at CRAN
Permanent link

Package ARPALData updated to version 1.2.1 with previous version 1.2.0 dated 2021-09-12

Title: Retrieving, Managing and Analysing Air Quality and Weather Data for Lombardy (Italy) using ARPA Lombardia Open Database
Description: Contains functions for retrieving, managing and analysing air quality and weather data from Regione Lombardia open database (<https://www.dati.lombardia.it/>). Data are collected by ARPA Lombardia (Lombardia Environmental Protection Agency), Italy, through its ground monitoring network. See the webpage <https://www.arpalombardia.it/Pages/ARPA_Home_Page.aspx> for further information on ARPA Lombardia's activities and history. Data quality (e.g. missing values, exported values, graphical mapping) has been checked involving members of the ARPA Lombardia's office for air quality control. The package makes available observations since 1989 (for weather) and 1996 (for air quality) and are updated with daily frequency by the regional agency.
Author: Paolo Maranzano [aut, cre, cph] (<https://orcid.org/0000-0002-9228-2759>), Andrea Algieri [aut, cph]
Maintainer: Paolo Maranzano <pmaranzano.ricercastatistica@gmail.com>

Diff between ARPALData versions 1.2.0 dated 2021-09-12 and 1.2.1 dated 2021-10-19

 DESCRIPTION                                     |    8 +-
 MD5                                             |   36 +++++------
 R/ARPALdf_Summary_map.R                         |    2 
 R/Time_aggregate.R                              |    7 +-
 R/get_ARPA_Lombardia_AQ_data_1y.R               |   20 +-----
 R/get_ARPA_Lombardia_AQ_municipal_registry.R    |    2 
 R/get_ARPA_Lombardia_AQ_registry.R              |    2 
 R/get_ARPA_Lombardia_W_data.R                   |    4 -
 R/get_ARPA_Lombardia_W_data_1y.R                |   78 +++++++++++++-----------
 R/get_ARPA_Lombardia_W_registry.R               |    2 
 R/registry_KNN_dist.R                           |    8 +-
 R/url_dataset_year.R                            |    2 
 man/ARPALdf_Summary_map.Rd                      |    2 
 man/Time_aggregate.Rd                           |    7 +-
 man/get_ARPA_Lombardia_AQ_municipal_registry.Rd |    2 
 man/get_ARPA_Lombardia_AQ_registry.Rd           |    2 
 man/get_ARPA_Lombardia_W_data.Rd                |    2 
 man/get_ARPA_Lombardia_W_registry.Rd            |    2 
 man/registry_KNN_dist.Rd                        |    5 -
 19 files changed, 101 insertions(+), 92 deletions(-)

More information about ARPALData at CRAN
Permanent link

Package rcdd updated to version 1.4 with previous version 1.2-2 dated 2019-04-22

Title: Computational Geometry
Description: R interface to (some of) cddlib (<https://github.com/cddlib/cddlib>). Converts back and forth between two representations of a convex polytope: as solution of a set of linear equalities and inequalities and as convex hull of set of points and rays. Also does linear programming and redundant generator elimination (for example, convex hull in n dimensions). All functions can use exact infinite-precision rational arithmetic.
Author: Charles J. Geyer <charlie@stat.umn.edu> and Glen D. Meeden <glen@stat.umn.edu>, incorporates code from cddlib (ver 0.94f) written by Komei Fukuda <fukuda@ifor.math.ethz.ch>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>

Diff between rcdd versions 1.2-2 dated 2019-04-22 and 1.4 dated 2021-10-19

 DESCRIPTION              |   15 +--
 MD5                      |   60 +++++++-------
 R/onAttach.R             |    4 
 build/vignette.rds       |binary
 inst/doc/vinny.R         |   57 +++++++++++++
 inst/doc/vinny.Rnw       |  192 ++++++++++++++++++++++++++++++++++++++++++++++-
 inst/doc/vinny.pdf       |binary
 man/qgram.Rd             |   10 +-
 man/scdd.Rd              |    2 
 tests/allfaces.Rout.save |    9 --
 tests/arith.Rout.save    |    9 --
 tests/bar-gmp.Rout.save  |    9 --
 tests/bar.Rout.save      |   11 +-
 tests/bug.Rout.save      |    9 --
 tests/bug2.Rout.save     |    9 --
 tests/chull.Rout.save    |    9 --
 tests/chull2.Rout.save   |   11 +-
 tests/convert.Rout.save  |    9 --
 tests/fred.Rout.save     |    9 --
 tests/lpcdd.Rout.save    |    9 --
 tests/make.Rout.save     |   11 +-
 tests/oops.Rout.save     |    9 --
 tests/qgram.Rout.save    |    9 --
 tests/qmatmult.Rout.save |    9 --
 tests/qux-gmp.Rout.save  |    9 --
 tests/qux.Rout.save      |    9 --
 tests/redund.Rout.save   |    9 --
 tests/sammy.Rout.save    |    9 --
 tests/subset.Rout.save   |    9 --
 tests/zero.Rout.save     |    9 --
 vignettes/vinny.Rnw      |  192 ++++++++++++++++++++++++++++++++++++++++++++++-
 31 files changed, 572 insertions(+), 155 deletions(-)

More information about rcdd at CRAN
Permanent link

Package SuperGauss updated to version 2.0.2 with previous version 2.0.1 dated 2020-10-03

Title: Superfast Likelihood Inference for Stationary Gaussian Time Series
Description: Likelihood evaluations for stationary Gaussian time series are typically obtained via the Durbin-Levinson algorithm, which scales as O(n^2) in the number of time series observations. This package provides a "superfast" O(n log^2 n) algorithm written in C++, crossing over with Durbin-Levinson around n = 300. Efficient implementations of the score and Hessian functions are also provided, leading to superfast versions of inference algorithms such as Newton-Raphson and Hamiltonian Monte Carlo. The C++ code provides a Toeplitz matrix class packaged as a header-only library, to simplify low-level usage in other packages and outside of R.
Author: Yun Ling [aut], Martin Lysy [aut, cre]
Maintainer: Martin Lysy <mlysy@uwaterloo.ca>

Diff between SuperGauss versions 2.0.1 dated 2020-10-03 and 2.0.2 dated 2021-10-19

 DESCRIPTION                       |    8 
 MD5                               |   14 
 build/vignette.rds                |binary
 configure                         |  731 ++++++++++++++++++++++++++++++++++++++
 configure.ac                      |   12 
 inst/doc/SuperGauss-quicktut.html |   51 +-
 man/SuperGauss-package.Rd         |    2 
 man/Toeplitz.Rd                   |    7 
 8 files changed, 789 insertions(+), 36 deletions(-)

More information about SuperGauss at CRAN
Permanent link

Package sumFREGAT updated to version 1.2.2 with previous version 1.2.1 dated 2021-02-28

Title: Fast Region-Based Association Tests on Summary Statistics
Description: An adaptation of classical region/gene-based association analysis techniques to the use of summary statistics (P values and effect sizes) and correlations between genetic variants as input. It is a tool to perform the most popular and efficient gene-based tests using the results of genome-wide association (meta-)analyses without having the original genotypes and phenotypes at hand.
Author: Nadezhda M. Belonogova <belon@bionet.nsc.ru> and Gulnara R. Svishcheva <gulsvi@bionet.nsc.ru> with contributions from: Seunggeun Lee (kernel functions), Pierre Lafaye de Micheaux ('davies' method), Minghui Wang, Yiyuan Liu, Shizhong Han (simpleM function), Yaowu Liu (ACAT function), Thomas Lumley ('kuonen' method), and James O. Ramsay (functional data analysis functions)
Maintainer: Nadezhda M. Belonogova <belon@bionet.nsc.ru>

Diff between sumFREGAT versions 1.2.1 dated 2021-02-28 and 1.2.2 dated 2021-10-19

 sumFREGAT-1.2.1/sumFREGAT/R/FFGAS.R                        |only
 sumFREGAT-1.2.1/sumFREGAT/R/MLR.R                          |only
 sumFREGAT-1.2.1/sumFREGAT/man/FFGAS.rd                     |only
 sumFREGAT-1.2.2/sumFREGAT/ChangeLog                        |    5 
 sumFREGAT-1.2.2/sumFREGAT/DESCRIPTION                      |    6 
 sumFREGAT-1.2.2/sumFREGAT/MD5                              |   39 
 sumFREGAT-1.2.2/sumFREGAT/NAMESPACE                        |    2 
 sumFREGAT-1.2.2/sumFREGAT/R/ACAT.R                         |    2 
 sumFREGAT-1.2.2/sumFREGAT/R/ACATO.R                        |    5 
 sumFREGAT-1.2.2/sumFREGAT/R/BT.R                           |   11 
 sumFREGAT-1.2.2/sumFREGAT/R/FLM.R                          |   46 -
 sumFREGAT-1.2.2/sumFREGAT/R/KMTest_Optimal.R               |   86 +-
 sumFREGAT-1.2.2/sumFREGAT/R/PCA.R                          |  178 ++--
 sumFREGAT-1.2.2/sumFREGAT/R/SKAT.R                         |   48 -
 sumFREGAT-1.2.2/sumFREGAT/R/SKATO.R                        |   66 -
 sumFREGAT-1.2.2/sumFREGAT/R/check.R                        |   37 
 sumFREGAT-1.2.2/sumFREGAT/R/genewise.R                     |   28 
 sumFREGAT-1.2.2/sumFREGAT/R/get.sumstat.R                  |  557 +++++++------
 sumFREGAT-1.2.2/sumFREGAT/R/sumSTAAR.R                     |only
 sumFREGAT-1.2.2/sumFREGAT/R/sumchi.R                       |    2 
 sumFREGAT-1.2.2/sumFREGAT/man/gene-based_test_functions.rd |   47 -
 sumFREGAT-1.2.2/sumFREGAT/man/sumFREGAT-package.rd         |    2 
 sumFREGAT-1.2.2/sumFREGAT/man/sumSTAAR.rd                  |only
 23 files changed, 622 insertions(+), 545 deletions(-)

More information about sumFREGAT at CRAN
Permanent link

Package qgraph updated to version 1.9 with previous version 1.6.9 dated 2021-01-28

Title: Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimation
Description: Weighted network visualization and analysis, as well as Gaussian graphical model computation. See Epskamp et al. (2012) <doi:10.18637/jss.v048.i04>.
Author: Sacha Epskamp [aut, cre], Giulio Costantini [aut], Jonas Haslbeck [aut], Adela Isvoranu [aut], Angelique O. J. Cramer [ctb], Lourens J. Waldorp [ctb], Verena D. Schmittmann [ctb], Denny Borsboom [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>

Diff between qgraph versions 1.6.9 dated 2021-01-28 and 1.9 dated 2021-10-19

 DESCRIPTION             |    8 ++++----
 MD5                     |   22 +++++++++++-----------
 NEWS                    |   16 ++++++++++++++++
 R/centralityFunctions.R |   13 ++++++++++++-
 R/centralityPlot.R      |    2 +-
 R/clusteringPlot.R      |    2 +-
 R/cor_auto.R            |    4 ++--
 R/qgraph.R              |   28 ++++++++++++++++++++++------
 R/vein.R                |   15 ++++++++++++++-
 man/CentAndClusfuns.Rd  |    4 ++--
 man/qgraph.Rd           |   12 +-----------
 man/qgraph_loadings.Rd  |   10 ++++++----
 12 files changed, 92 insertions(+), 44 deletions(-)

More information about qgraph at CRAN
Permanent link

Package modeltime.ensemble updated to version 1.0.0 with previous version 0.4.2 dated 2021-07-16

Title: Ensemble Algorithms for Time Series Forecasting with Modeltime
Description: A 'modeltime' extension that implements time series ensemble forecasting methods including model averaging, weighted averaging, and stacking. These techniques are popular methods to improve forecast accuracy and stability. Refer to papers such as "Machine-Learning Models for Sales Time Series Forecasting" Pavlyshenko, B.M. (2019) <doi:10.3390>.
Author: Matt Dancho [aut, cre], Business Science [cph]
Maintainer: Matt Dancho <mdancho@business-science.io>

Diff between modeltime.ensemble versions 0.4.2 dated 2021-07-16 and 1.0.0 dated 2021-10-19

 DESCRIPTION                                           |   15 +++---
 MD5                                                   |   28 ++++++++----
 NAMESPACE                                             |    4 +
 NEWS.md                                               |   14 ++++++
 R/00_global_variables.R                               |    3 -
 R/nested_ensemble_average.R                           |only
 R/nested_ensemble_weighted.R                          |only
 R/utils-parallel_processing.R                         |only
 README.md                                             |    6 +-
 build/vignette.rds                                    |binary
 inst/doc/getting-started-with-modeltime-ensemble.html |   12 +----
 inst/doc/nested-ensembles.R                           |only
 inst/doc/nested-ensembles.Rmd                         |only
 inst/doc/nested-ensembles.html                        |only
 inst/doc/recursive-ensembles.html                     |   12 ++---
 man/ensemble_nested_average.Rd                        |only
 man/ensemble_nested_weighted.Rd                       |only
 tests/testthat/test-ensemble_model_spec.R             |   42 +++++++-----------
 tests/testthat/test-nested-ensembles.R                |only
 vignettes/nested-ensembles.Rmd                        |only
 20 files changed, 77 insertions(+), 59 deletions(-)

More information about modeltime.ensemble at CRAN
Permanent link

Package languageserver updated to version 0.3.12 with previous version 0.3.11 dated 2021-07-22

Title: Language Server Protocol
Description: An implementation of the Language Server Protocol for R. The Language Server protocol is used by an editor client to integrate features like auto completion. See <https://microsoft.github.io/language-server-protocol/> for details.
Author: Randy Lai [aut, cre], Kun Ren [ctb]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>

Diff between languageserver versions 0.3.11 dated 2021-07-22 and 0.3.12 dated 2021-10-19

 languageserver-0.3.11/languageserver/man/document_code_action_reply.Rd |only
 languageserver-0.3.12/languageserver/DESCRIPTION                       |   17 -
 languageserver-0.3.12/languageserver/MD5                               |   39 +-
 languageserver-0.3.12/languageserver/NEWS.md                           |   17 +
 languageserver-0.3.12/languageserver/R/completion.R                    |   14 
 languageserver-0.3.12/languageserver/R/definition.R                    |    8 
 languageserver-0.3.12/languageserver/R/document.R                      |    2 
 languageserver-0.3.12/languageserver/R/handlers-langfeatures.R         |    4 
 languageserver-0.3.12/languageserver/R/hover.R                         |   15 
 languageserver-0.3.12/languageserver/R/namespace.R                     |    2 
 languageserver-0.3.12/languageserver/R/signature.R                     |    4 
 languageserver-0.3.12/languageserver/R/utils.R                         |   45 ++
 languageserver-0.3.12/languageserver/R/workspace.R                     |    4 
 languageserver-0.3.12/languageserver/README.md                         |   34 +-
 languageserver-0.3.12/languageserver/tests/testthat/helper-utils.R     |   95 +++---
 languageserver-0.3.12/languageserver/tests/testthat/test-completion.R  |   71 ++++
 languageserver-0.3.12/languageserver/tests/testthat/test-definition.R  |   74 ++++
 languageserver-0.3.12/languageserver/tests/testthat/test-hover.R       |  153 +++++++++-
 languageserver-0.3.12/languageserver/tests/testthat/test-link.R        |  136 ++++++++
 languageserver-0.3.12/languageserver/tests/testthat/test-signature.R   |   19 +
 languageserver-0.3.12/languageserver/tests/testthat/test-workspace.R   |    2 
 21 files changed, 650 insertions(+), 105 deletions(-)

More information about languageserver at CRAN
Permanent link

Package fairadapt updated to version 0.2.1 with previous version 0.2.0 dated 2021-07-28

Title: Fair Data Adaptation with Quantile Preservation
Description: An implementation of the fair data adaptation with quantile preservation described in Plecko & Meinshausen (2019) <arXiv:1911.06685>. The adaptation procedure uses the specified causal graph to pre-process the given training and testing data in such a way to remove the bias caused by the protected attribute. The procedure uses tree ensembles for quantile regression.
Author: Drago Plecko [aut, cre], Nicolas Bennett [aut]
Maintainer: Drago Plecko <drago.plecko@stat.math.ethz.ch>

Diff between fairadapt versions 0.2.0 dated 2021-07-28 and 0.2.1 dated 2021-10-19

 fairadapt-0.2.0/fairadapt/tests/PSCF                                              |only
 fairadapt-0.2.0/fairadapt/tests/benchmarking                                      |only
 fairadapt-0.2.0/fairadapt/tests/hidden                                            |only
 fairadapt-0.2.0/fairadapt/tests/real-data                                         |only
 fairadapt-0.2.0/fairadapt/vignettes/jss.fdb_latexmk                               |only
 fairadapt-0.2.0/fairadapt/vignettes/jss.fls                                       |only
 fairadapt-0.2.0/fairadapt/vignettes/jss_files/figure-latex/census-adapt-1.pdf     |only
 fairadapt-0.2.0/fairadapt/vignettes/jss_files/figure-latex/graph-semimarkov-1.pdf |only
 fairadapt-0.2.0/fairadapt/vignettes/jss_files/figure-latex/log-and-graph-1.pdf    |only
 fairadapt-0.2.0/fairadapt/vignettes/jss_files/figure-latex/mat-1.pdf              |only
 fairadapt-0.2.0/fairadapt/vignettes/jss_files/figure-latex/resolving-graph-1.pdf  |only
 fairadapt-0.2.0/fairadapt/vignettes/jss_files/figure-latex/vis-diff-1.pdf         |only
 fairadapt-0.2.1/fairadapt/DESCRIPTION                                             |   21 
 fairadapt-0.2.1/fairadapt/MD5                                                     |  125 -
 fairadapt-0.2.1/fairadapt/NEWS.md                                                 |    5 
 fairadapt-0.2.1/fairadapt/R/checks.R                                              |   18 
 fairadapt-0.2.1/fairadapt/R/data.R                                                |    2 
 fairadapt-0.2.1/fairadapt/R/fairadapt.R                                           |    6 
 fairadapt-0.2.1/fairadapt/R/generics.R                                            |   15 
 fairadapt-0.2.1/fairadapt/R/graphs.R                                              |    4 
 fairadapt-0.2.1/fairadapt/README.md                                               |    4 
 fairadapt-0.2.1/fairadapt/build/vignette.rds                                      |binary
 fairadapt-0.2.1/fairadapt/inst/doc/jss.R                                          |  358 ++-
 fairadapt-0.2.1/fairadapt/inst/doc/jss.Rmd                                        |  901 ++++++----
 fairadapt-0.2.1/fairadapt/inst/doc/jss.pdf                                        |binary
 fairadapt-0.2.1/fairadapt/man/fairTwins.Rd                                        |    2 
 fairadapt-0.2.1/fairadapt/man/fairadapt.Rd                                        |    5 
 fairadapt-0.2.1/fairadapt/man/gov_census.Rd                                       |    2 
 fairadapt-0.2.1/fairadapt/tests/testthat/_snaps/generics/auto_cts.png             |binary
 fairadapt-0.2.1/fairadapt/tests/testthat/_snaps/generics/auto_rf.png              |binary
 fairadapt-0.2.1/fairadapt/tests/testthat/_snaps/generics/ftdef_cts.csv            |   99 +
 fairadapt-0.2.1/fairadapt/tests/testthat/_snaps/generics/ftdef_lin.csv            |   99 +
 fairadapt-0.2.1/fairadapt/tests/testthat/_snaps/generics/ftdef_rf.csv             |   99 +
 fairadapt-0.2.1/fairadapt/tests/testthat/_snaps/generics/plot_cts.png             |binary
 fairadapt-0.2.1/fairadapt/tests/testthat/_snaps/generics/plot_rf.png              |binary
 fairadapt-0.2.1/fairadapt/tests/testthat/helpers.R                                |    9 
 fairadapt-0.2.1/fairadapt/tests/testthat/test-checks.R                            |    2 
 fairadapt-0.2.1/fairadapt/tests/testthat/test-generics.R                          |    6 
 fairadapt-0.2.1/fairadapt/vignettes/jss.Rmd                                       |  901 ++++++----
 fairadapt-0.2.1/fairadapt/vignettes/jss.bib                                       |  297 ++-
 fairadapt-0.2.1/fairadapt/vignettes/jss_cache                                     |only
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/before-adapt-1.pdf     |only
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/census-graph-1.pdf     |binary
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/census-tikz-1.pdf      |only
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/census-tikz-1.png      |only
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/fairtwin-plot-1.pdf    |only
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/graph-plot-1.pdf       |only
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/rel-edu-1.pdf          |only
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/rel-edu-1.png          |only
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/res-graph-1.pdf        |only
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/semi-graph-1.pdf       |only
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/semi-markov-1.pdf      |only
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/semi-markov-1.png      |only
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/uni-adm-1.pdf          |only
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/uni-adm-1.png          |only
 fairadapt-0.2.1/fairadapt/vignettes/jss_files/figure-latex/vis-adapt-1.pdf        |binary
 56 files changed, 1945 insertions(+), 1035 deletions(-)

More information about fairadapt at CRAN
Permanent link

Package NetLogoR updated to version 0.3.9 with previous version 0.3.8 dated 2021-07-10

Title: Build and Run Spatially Explicit Agent-Based Models
Description: Build and run spatially explicit agent-based models using only the R platform. 'NetLogoR' follows the same framework as the 'NetLogo' software (Wilensky, 1999 <http://ccl.northwestern.edu/netlogo/>) and is a translation in R of the structure and functions of 'NetLogo'. 'NetLogoR' provides new R classes to define model agents and functions to implement spatially explicit agent-based models in the R environment. This package allows benefiting of the fast and easy coding phase from the highly developed 'NetLogo' framework, coupled with the versatility, power and massive resources of the R software. Examples of three models (Ants <http://ccl.northwestern.edu/netlogo/models/Ants>, Butterfly (Railsback and Grimm, 2012) and Wolf-Sheep-Predation <http://ccl.northwestern.edu/netlogo/models/WolfSheepPredation>) written using 'NetLogoR' are available. The 'NetLogo' code of the original version of these models is provided alongside. A programming guide inspired from the 'NetLogo' Programming Guide (<https://ccl.northwestern.edu/netlogo/docs/programming.html>) and a dictionary of 'NetLogo' primitives (<https://ccl.northwestern.edu/netlogo/docs/dictionary.html>) equivalences are also available. NOTE: To increment 'time', these functions can use a for loop or can be integrated with a discrete event simulator, such as 'SpaDES' (<https://cran.r-project.org/package=SpaDES>). The suggested package 'fastshp' can be installed with 'install.packages("fastshp", repos = "https://rforge.net", type = "source")'.
Author: Sarah Bauduin [aut] (<https://orcid.org/0000-0002-3252-5894>), Eliot J B McIntire [aut, cre] (<https://orcid.org/0000-0002-6914-8316>), Alex M Chubaty [aut] (<https://orcid.org/0000-0001-7146-8135>), Her Majesty the Queen in Right of Canada, as represented by the Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>

Diff between NetLogoR versions 0.3.8 dated 2021-07-10 and 0.3.9 dated 2021-10-19

 DESCRIPTION                           |   12 ++---
 MD5                                   |   26 +++++------
 NAMESPACE                             |    1 
 NEWS.md                               |    8 +++
 R/NetLogoR-package.R                  |   10 +++-
 R/world-functions.R                   |   78 ++++++++++------------------------
 R/worldNLR-classes-methods.R          |   12 ++++-
 README.md                             |    7 +--
 build/vignette.rds                    |binary
 inst/doc/ProgrammingGuide.html        |   24 +++++-----
 man/projNowhere.Rd                    |    5 ++
 man/raster2world.Rd                   |   23 +++++-----
 man/stackWorlds.Rd                    |    7 ++-
 tests/testthat/test-world-functions.R |   12 ++++-
 14 files changed, 119 insertions(+), 106 deletions(-)

More information about NetLogoR at CRAN
Permanent link

Package Langevin updated to version 1.3.1 with previous version 1.3.0 dated 2021-10-18

Title: Langevin Analysis in One and Two Dimensions
Description: Estimate drift and diffusion functions from time series and generate synthetic time series from given drift and diffusion coefficients.
Author: Philip Rinn [aut, cre], Pedro G. Lind [aut], David Bastine [ctb]
Maintainer: Philip Rinn <philip.rinn@uni-oldenburg.de>

Diff between Langevin versions 1.3.0 dated 2021-10-18 and 1.3.1 dated 2021-10-19

 ChangeLog             |    4 ++++
 DESCRIPTION           |    8 ++++----
 MD5                   |   10 +++++-----
 inst/doc/Langevin.pdf |binary
 src/Makevars          |    6 ------
 src/Makevars.win      |   12 +-----------
 6 files changed, 14 insertions(+), 26 deletions(-)

More information about Langevin at CRAN
Permanent link

Package rWind updated to version 1.1.7 with previous version 1.1.5 dated 2020-02-17

Title: Download, Edit and Include Wind and Sea Currents Data in Ecological and Evolutionary Analysis
Description: Tools for download and manage surface wind and sea currents data from the Global Forecasting System <https://www.ncei.noaa.gov/products/weather-climate-models/global-forecast> and to compute connectivity between locations.
Author: Javier Fernández-López [aut, cre], Klaus Schliep [aut], Yurena Arjona [aut]
Maintainer: Javier Fernández-López <jflopez.bio@gmail.com>

Diff between rWind versions 1.1.5 dated 2020-02-17 and 1.1.7 dated 2021-10-19

 DESCRIPTION                  |   16 
 MD5                          |   53 +-
 NEWS                         |   16 
 R/rWind-package.R            |   14 
 R/wind_functions2.R          |  869 +++++++++++++++++++++++--------------------
 README.md                    |  122 +++++-
 build/vignette.rds           |binary
 inst/WORDLIST                |only
 inst/doc/Shortest_paths.R    |   16 
 inst/doc/Shortest_paths.Rmd  |    2 
 inst/doc/Shortest_paths.html |  258 ++++++++----
 man/arrowDir.Rd              |   11 
 man/flow.dispersion.Rd       |   17 
 man/flow.dispersion_int.Rd   |   16 
 man/rWind-package.Rd         |   10 
 man/seaOscar.dl.Rd           |   23 -
 man/tidy.rWind_series.Rd     |    5 
 man/uv2ds.Rd                 |   11 
 man/wind.data.Rd             |    9 
 man/wind.dl.Rd               |   30 -
 man/wind.dl_2.Rd             |   32 -
 man/wind.fit_int.Rd          |    6 
 man/wind.mean.Rd             |   10 
 man/wind.series.Rd           |    8 
 man/wind2raster.Rd           |    5 
 man/wind2raster_int.Rd       |    4 
 tests/testthat/test_rWind.R  |   31 -
 vignettes/Shortest_paths.Rmd |    2 
 28 files changed, 921 insertions(+), 675 deletions(-)

More information about rWind at CRAN
Permanent link

Package cancensus updated to version 0.4.4 with previous version 0.4.3 dated 2021-06-08

Title: Access, Retrieve, and Work with Canadian Census Data and Geography
Description: Integrated, convenient, and uniform access to Canadian Census data and geography retrieved using the 'CensusMapper' API. This package produces analysis-ready tidy data frames and spatial data in multiple formats, as well as convenience functions for working with Census variables, variable hierarchies, and region selection. API keys are freely available with free registration at <https://censusmapper.ca/api>. Census data and boundary geometries are reproduced and distributed on an "as is" basis with the permission of Statistics Canada (Statistics Canada 2001; 2006; 2011; 2016).
Author: Jens von Bergmann [aut] (API creator and maintainer), Dmitry Shkolnik [aut, cre] (Package maintainer, responsible for correspondence), Aaron Jacobs [aut]
Maintainer: Dmitry Shkolnik <shkolnikd@gmail.com>

Diff between cancensus versions 0.4.3 dated 2021-06-08 and 0.4.4 dated 2021-10-19

 DESCRIPTION                                               |    6 
 MD5                                                       |   48 
 NEWS.md                                                   |    5 
 build/vignette.rds                                        |binary
 inst/doc/Dwellings_by_document_type_cross_tabulation.html |  339 
 inst/doc/Making_maps_with_cancensus.R                     |    7 
 inst/doc/Making_maps_with_cancensus.Rmd                   |    7 
 inst/doc/Making_maps_with_cancensus.html                  | 5062 --------------
 inst/doc/Taxfiler_Data.R                                  |    8 
 inst/doc/Taxfiler_Data.Rmd                                |    8 
 inst/doc/Taxfiler_Data.html                               |  389 -
 inst/doc/cancensus.R                                      |    9 
 inst/doc/cancensus.Rmd                                    |    9 
 inst/doc/cancensus.html                                   |  484 -
 inst/doc/data_discovery.R                                 |   15 
 inst/doc/data_discovery.Rmd                               |   15 
 inst/doc/data_discovery.html                              | 1736 ----
 inst/doc/intersecting_geometries.R                        |    8 
 inst/doc/intersecting_geometries.Rmd                      |    8 
 inst/doc/intersecting_geometries.html                     |  321 
 vignettes/Making_maps_with_cancensus.Rmd                  |    7 
 vignettes/Taxfiler_Data.Rmd                               |    8 
 vignettes/cancensus.Rmd                                   |    9 
 vignettes/data_discovery.Rmd                              |   15 
 vignettes/intersecting_geometries.Rmd                     |    8 
 25 files changed, 745 insertions(+), 7786 deletions(-)

More information about cancensus at CRAN
Permanent link

Package Ravages updated to version 1.0.0 with previous version 0.1.5 dated 2021-05-12

Title: Rare Variant Analysis and Genetic Simulations
Description: Rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test (Bocher et al. 2021 <doi:10.1038/s41431-020-00792-8>) in the whole genome; and genetic simulations.
Author: Ozvan Bocher and Hervé Perdry
Maintainer: Ozvan Bocher <bocherozvan@gmail.com>

Diff between Ravages versions 0.1.5 dated 2021-05-12 and 1.0.0 dated 2021-10-19

 Ravages-0.1.5/Ravages/R/random_bed_matrix.r                      |only
 Ravages-0.1.5/Ravages/man/random.bed.matrix.Rd                   |only
 Ravages-1.0.0/Ravages/DESCRIPTION                                |   12 
 Ravages-1.0.0/Ravages/MD5                                        |  102 ++-
 Ravages-1.0.0/Ravages/NAMESPACE                                  |   19 
 Ravages-1.0.0/Ravages/NEWS                                       |   21 
 Ravages-1.0.0/Ravages/R/CAST.r                                   |   16 
 Ravages-1.0.0/Ravages/R/RAVA_FIRST.r                             |only
 Ravages-1.0.0/Ravages/R/adjustedCADD_annotation.r                |only
 Ravages-1.0.0/Ravages/R/burden.r                                 |    6 
 Ravages-1.0.0/Ravages/R/burden_continuous.r                      |   25 
 Ravages-1.0.0/Ravages/R/burden_continuous_subscores.r            |only
 Ravages-1.0.0/Ravages/R/burden_mlogit.r                          |   18 
 Ravages-1.0.0/Ravages/R/burden_mlogit_subscores.r                |only
 Ravages-1.0.0/Ravages/R/burden_subscores.r                       |only
 Ravages-1.0.0/Ravages/R/filter_adjustedCADD.r                    |only
 Ravages-1.0.0/Ravages/R/filter_rare_variants.r                   |   19 
 Ravages-1.0.0/Ravages/R/genotypic.freq.r                         |    9 
 Ravages-1.0.0/Ravages/R/or_matrix_fix.r                          |   10 
 Ravages-1.0.0/Ravages/R/or_matrix_fix_same_variant.r             |   10 
 Ravages-1.0.0/Ravages/R/random_bed_matrix_haplo.r                |   30 -
 Ravages-1.0.0/Ravages/R/rbm_GRR.r                                |only
 Ravages-1.0.0/Ravages/R/rbm_GRR_power.r                          |only
 Ravages-1.0.0/Ravages/R/rbm_haplos_power.r                       |only
 Ravages-1.0.0/Ravages/R/set_CADDregions.r                        |only
 Ravages-1.0.0/Ravages/R/set_genomic_region.r                     |   19 
 Ravages-1.0.0/Ravages/R/set_genomic_region_subregion.r           |only
 Ravages-1.0.0/Ravages/data/Subregions_LCT_example.RData          |only
 Ravages-1.0.0/Ravages/data/datalist                              |    1 
 Ravages-1.0.0/Ravages/data/genes.b37.RData                       |binary
 Ravages-1.0.0/Ravages/data/genes.b38.RData                       |binary
 Ravages-1.0.0/Ravages/inst/doc/Ravages_Simulations_vignette.R    |   72 --
 Ravages-1.0.0/Ravages/inst/doc/Ravages_Simulations_vignette.Rmd  |  139 ++---
 Ravages-1.0.0/Ravages/inst/doc/Ravages_Simulations_vignette.html |  157 ++---
 Ravages-1.0.0/Ravages/inst/doc/Ravages_vignette.R                |  102 ++-
 Ravages-1.0.0/Ravages/inst/doc/Ravages_vignette.Rmd              |  235 ++++++--
 Ravages-1.0.0/Ravages/inst/doc/Ravages_vignette.html             |  274 +++++++---
 Ravages-1.0.0/Ravages/man/CAST.Rd                                |    7 
 Ravages-1.0.0/Ravages/man/GRR.matrix.Rd                          |    4 
 Ravages-1.0.0/Ravages/man/GnomADgenes.Rd                         |    2 
 Ravages-1.0.0/Ravages/man/Jaccard.Rd                             |    8 
 Ravages-1.0.0/Ravages/man/RAVA_FIRST.Rd                          |only
 Ravages-1.0.0/Ravages/man/SKAT.Rd                                |    9 
 Ravages-1.0.0/Ravages/man/adjustedCADD_annotation.Rd             |only
 Ravages-1.0.0/Ravages/man/burden.Rd                              |   28 -
 Ravages-1.0.0/Ravages/man/burden.continuous.Rd                   |   15 
 Ravages-1.0.0/Ravages/man/burden.continuous.subscores.Rd         |only
 Ravages-1.0.0/Ravages/man/burden.mlogit.Rd                       |   10 
 Ravages-1.0.0/Ravages/man/burden.mlogit.subscores.Rd             |only
 Ravages-1.0.0/Ravages/man/burden.subscores.Rd                    |only
 Ravages-1.0.0/Ravages/man/burden.weighted.matrix.Rd              |    2 
 Ravages-1.0.0/Ravages/man/filter.rare.variants.Rd                |   19 
 Ravages-1.0.0/Ravages/man/filter_adjustedCADD.Rd                 |only
 Ravages-1.0.0/Ravages/man/genes.positions.Rd                     |   10 
 Ravages-1.0.0/Ravages/man/genotypic.freq.Rd                      |    9 
 Ravages-1.0.0/Ravages/man/rbm.GRR.Rd                             |only
 Ravages-1.0.0/Ravages/man/rbm.GRR.power.Rd                       |only
 Ravages-1.0.0/Ravages/man/rbm.haplos.power.Rd                    |only
 Ravages-1.0.0/Ravages/man/rbm.haplos.thresholds.Rd               |   12 
 Ravages-1.0.0/Ravages/man/set.CADDregions.Rd                     |only
 Ravages-1.0.0/Ravages/man/set.genomic.region.Rd                  |   15 
 Ravages-1.0.0/Ravages/man/set.genomic.region.subregion.Rd        |only
 Ravages-1.0.0/Ravages/man/subregions.LCT.Rd                      |only
 Ravages-1.0.0/Ravages/vignettes/Ravages_Simulations_vignette.Rmd |  139 ++---
 Ravages-1.0.0/Ravages/vignettes/Ravages_vignette.Rmd             |  235 ++++++--
 65 files changed, 1160 insertions(+), 660 deletions(-)

More information about Ravages at CRAN
Permanent link

Package pairwiseComparisons (with last version 3.2.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-10-19 3.2.0
2021-06-01 3.1.6
2021-04-27 3.1.5
2021-02-03 3.1.3
2021-01-15 3.1.2
2020-12-03 3.1.1
2020-10-28 3.1.0
2020-10-06 3.0.0
2020-09-12 2.0.1
2020-09-04 2.0.0
2020-06-23 1.1.2
2020-06-21 1.1.1
2020-05-29 1.0.0
2020-05-27 0.3.1
2020-04-11 0.3.0
2020-02-11 0.2.5
2020-02-02 0.2.0
2019-12-19 0.1.3
2019-10-24 0.1.2
2019-09-17 0.1.1
2019-08-28 0.1.0

Permanent link
New package R2BayesX with initial version 1.1-1.1
Package: R2BayesX
Version: 1.1-1.1
Date: 2017-12-05
Title: Estimate Structured Additive Regression Models with 'BayesX'
Description: An R interface to estimate structured additive regression (STAR) models with 'BayesX'.
Depends: R (>= 2.13.0), BayesXsrc, colorspace, mgcv
Suggests: akima, coda, maps, maptools, MBA, parallel, shapefiles, sp, spdep, splines, rgdal, spData, rgeos
Imports: methods
License: GPL-2 | GPL-3
LazyLoad: yes
NeedsCompilation: yes
Packaged: 2021-10-19 11:35:09 UTC; hornik
Author: Nikolaus Umlauf [aut, cre], Thomas Kneib [aut], Stefan Lang [aut], Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
Repository: CRAN
Date/Publication: 2021-10-19 12:06:37 UTC

More information about R2BayesX at CRAN
Permanent link

Package jstable updated to version 1.0.7 with previous version 1.0.6 dated 2021-07-25

Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>), Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>

Diff between jstable versions 1.0.6 dated 2021-07-25 and 1.0.7 dated 2021-10-19

 DESCRIPTION           |    8 +--
 MD5                   |   20 ++++----
 NEWS.md               |    4 +
 R/cox2.R              |    4 -
 R/gee.R               |   16 +++---
 R/glmshow.R           |    9 ++-
 R/lmer.R              |  125 ++++++++++++++++++++++++--------------------------
 R/svycox.R            |   10 ++--
 R/svyglm.R            |    5 +-
 build/vignette.rds    |binary
 inst/doc/jstable.html |   31 ++++++------
 11 files changed, 120 insertions(+), 112 deletions(-)

More information about jstable at CRAN
Permanent link

Package ipmisc (with last version 6.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-05-07 6.0.2
2021-02-13 6.0.0
2021-01-08 5.0.2
2020-12-08 5.0.1
2020-12-07 5.0.0
2020-10-25 4.1.0
2020-10-05 4.0.0
2020-09-13 3.2.0
2020-06-19 3.1.0
2020-05-31 3.0.0
2020-04-11 2.0.0
2020-03-06 1.2.0
2020-02-09 1.1.0
2020-02-06 1.0.0

Permanent link
Package ggstatsplot updated to version 0.9.0 with previous version 0.8.0 dated 2021-06-09

Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates graphics with details from statistical tests included in the plots themselves. It provides an easier syntax to generate information-rich plots for statistical analysis of continuous (violin plots, scatterplots, histograms, dot plots, dot-and-whisker plots) or categorical (pie and bar charts) data. Currently, it supports the most common types of statistical approaches and tests: parametric, nonparametric, robust, and Bayesian versions of t-test/ANOVA, correlation analyses, contingency table analysis, meta-analysis, and regression analyses.
Author: Indrajeet Patil [cre, aut, cph] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>

Diff between ggstatsplot versions 0.8.0 dated 2021-06-09 and 0.9.0 dated 2021-10-19

 ggstatsplot-0.8.0/ggstatsplot/R/grouped_ggbarstats.R                                             |only
 ggstatsplot-0.8.0/ggstatsplot/R/grouped_ggbetweenstats.R                                         |only
 ggstatsplot-0.8.0/ggstatsplot/R/grouped_ggcorrmat.R                                              |only
 ggstatsplot-0.8.0/ggstatsplot/R/grouped_ggdotplotstats.R                                         |only
 ggstatsplot-0.8.0/ggstatsplot/R/grouped_gghistostats.R                                           |only
 ggstatsplot-0.8.0/ggstatsplot/R/grouped_ggpiestats.R                                             |only
 ggstatsplot-0.8.0/ggstatsplot/R/grouped_ggscatterstats.R                                         |only
 ggstatsplot-0.8.0/ggstatsplot/R/grouped_ggwithinstats.R                                          |only
 ggstatsplot-0.8.0/ggstatsplot/R/helpers_ggcoefstats_graphics.R                                   |only
 ggstatsplot-0.8.0/ggstatsplot/R/helpers_grouped_functions.R                                      |only
 ggstatsplot-0.8.0/ggstatsplot/R/theme_ggstatsplot.R                                              |only
 ggstatsplot-0.8.0/ggstatsplot/data/VR_dilemma.rdata                                              |only
 ggstatsplot-0.8.0/ggstatsplot/data/movies_wide.rdata                                             |only
 ggstatsplot-0.8.0/ggstatsplot/man/VR_dilemma.Rd                                                  |only
 ggstatsplot-0.8.0/ggstatsplot/man/figures/README-ggcoefstats2-1.png                              |only
 ggstatsplot-0.8.0/ggstatsplot/man/figures/README-ggscatterstats3-1.png                           |only
 ggstatsplot-0.8.0/ggstatsplot/man/figures/arguments.png                                          |only
 ggstatsplot-0.8.0/ggstatsplot/man/figures/ggstatsverse.jpg                                       |only
 ggstatsplot-0.8.0/ggstatsplot/man/figures/lifecycle-archived.svg                                 |only
 ggstatsplot-0.8.0/ggstatsplot/man/figures/lifecycle-defunct.svg                                  |only
 ggstatsplot-0.8.0/ggstatsplot/man/figures/lifecycle-deprecated.svg                               |only
 ggstatsplot-0.8.0/ggstatsplot/man/figures/lifecycle-experimental.svg                             |only
 ggstatsplot-0.8.0/ggstatsplot/man/figures/lifecycle-maturing.svg                                 |only
 ggstatsplot-0.8.0/ggstatsplot/man/figures/lifecycle-questioning.svg                              |only
 ggstatsplot-0.8.0/ggstatsplot/man/figures/lifecycle-stable.svg                                   |only
 ggstatsplot-0.8.0/ggstatsplot/man/figures/lifecycle-superseded.svg                               |only
 ggstatsplot-0.8.0/ggstatsplot/man/ggcoefstats_label_maker.Rd                                     |only
 ggstatsplot-0.8.0/ggstatsplot/man/movies_wide.Rd                                                 |only
 ggstatsplot-0.8.0/ggstatsplot/tests/README.md                                                    |only
 ggstatsplot-0.8.0/ggstatsplot/tests/testthat/Rplots.pdf                                          |only
 ggstatsplot-0.8.0/ggstatsplot/vignettes/web_only/combine_plots.Rmd                               |only
 ggstatsplot-0.8.0/ggstatsplot/vignettes/web_only/effsize_interpretation.Rmd                      |only
 ggstatsplot-0.8.0/ggstatsplot/vignettes/web_only/other_resources.Rmd                             |only
 ggstatsplot-0.8.0/ggstatsplot/vignettes/web_only/session_info.Rmd                                |only
 ggstatsplot-0.9.0/ggstatsplot/DESCRIPTION                                                        |   24 
 ggstatsplot-0.9.0/ggstatsplot/MD5                                                                |  316 +-
 ggstatsplot-0.9.0/ggstatsplot/NAMESPACE                                                          |   86 
 ggstatsplot-0.9.0/ggstatsplot/NEWS.md                                                            |  134 -
 ggstatsplot-0.9.0/ggstatsplot/R/combine_plots.R                                                  |   17 
 ggstatsplot-0.9.0/ggstatsplot/R/data.R                                                           |  161 -
 ggstatsplot-0.9.0/ggstatsplot/R/extract_stats.R                                                  |   21 
 ggstatsplot-0.9.0/ggstatsplot/R/ggbarstats.R                                                     |  194 -
 ggstatsplot-0.9.0/ggstatsplot/R/ggbetweenstats.R                                                 |  276 +-
 ggstatsplot-0.9.0/ggstatsplot/R/ggcoefstats.R                                                    |  239 -
 ggstatsplot-0.9.0/ggstatsplot/R/ggcorrmat.R                                                      |  147 -
 ggstatsplot-0.9.0/ggstatsplot/R/ggdotplotstats.R                                                 |  182 -
 ggstatsplot-0.9.0/ggstatsplot/R/gghistostats.R                                                   |  206 +
 ggstatsplot-0.9.0/ggstatsplot/R/ggpiestats.R                                                     |  222 +
 ggstatsplot-0.9.0/ggstatsplot/R/ggscatterstats.R                                                 |  342 +-
 ggstatsplot-0.9.0/ggstatsplot/R/ggstatsplot-package.R                                            |   35 
 ggstatsplot-0.9.0/ggstatsplot/R/ggwithinstats.R                                                  |  280 +-
 ggstatsplot-0.9.0/ggstatsplot/R/global_vars.R                                                    |    7 
 ggstatsplot-0.9.0/ggstatsplot/R/helpers_ggbetweenstats_graphics.R                                |  161 -
 ggstatsplot-0.9.0/ggstatsplot/R/helpers_ggcatstats_graphics.R                                    |   55 
 ggstatsplot-0.9.0/ggstatsplot/R/helpers_gghistostats_graphics.R                                  |   15 
 ggstatsplot-0.9.0/ggstatsplot/R/pairwise_comparisons.R                                           |only
 ggstatsplot-0.9.0/ggstatsplot/R/reexports.R                                                      |   51 
 ggstatsplot-0.9.0/ggstatsplot/R/utils.R                                                          |only
 ggstatsplot-0.9.0/ggstatsplot/README.md                                                          |  486 +---
 ggstatsplot-0.9.0/ggstatsplot/build/vignette.rds                                                 |binary
 ggstatsplot-0.9.0/ggstatsplot/inst/WORDLIST                                                      |   31 
 ggstatsplot-0.9.0/ggstatsplot/inst/doc/additional.R                                              |    2 
 ggstatsplot-0.9.0/ggstatsplot/inst/doc/additional.Rmd                                            |   77 
 ggstatsplot-0.9.0/ggstatsplot/inst/doc/additional.html                                           |   64 
 ggstatsplot-0.9.0/ggstatsplot/man/combine_plots.Rd                                               |   13 
 ggstatsplot-0.9.0/ggstatsplot/man/extract_stats.Rd                                               |   14 
 ggstatsplot-0.9.0/ggstatsplot/man/figures/README-ggbarstats1-1.png                               |binary
 ggstatsplot-0.9.0/ggstatsplot/man/figures/README-ggbarstats2-1.png                               |binary
 ggstatsplot-0.9.0/ggstatsplot/man/figures/README-ggbetweenstats1-1.png                           |binary
 ggstatsplot-0.9.0/ggstatsplot/man/figures/README-ggbetweenstats2-1.png                           |binary
 ggstatsplot-0.9.0/ggstatsplot/man/figures/README-ggcoefstats1-1.png                              |binary
 ggstatsplot-0.9.0/ggstatsplot/man/figures/README-ggdotplotstats1-1.png                           |binary
 ggstatsplot-0.9.0/ggstatsplot/man/figures/README-gghistostats2-1.png                             |binary
 ggstatsplot-0.9.0/ggstatsplot/man/figures/README-ggpiestats1-1.png                               |binary
 ggstatsplot-0.9.0/ggstatsplot/man/figures/README-ggpiestats2-1.png                               |binary
 ggstatsplot-0.9.0/ggstatsplot/man/figures/README-ggscatterstats1-1.png                           |binary
 ggstatsplot-0.9.0/ggstatsplot/man/figures/README-ggscatterstats2-1.png                           |binary
 ggstatsplot-0.9.0/ggstatsplot/man/figures/README-ggwithinstats1-1.png                            |binary
 ggstatsplot-0.9.0/ggstatsplot/man/figures/README-ggwithinstats2-1.png                            |binary
 ggstatsplot-0.9.0/ggstatsplot/man/figures/README-ridgeplot-1.png                                 |binary
 ggstatsplot-0.9.0/ggstatsplot/man/ggbarstats.Rd                                                  |   29 
 ggstatsplot-0.9.0/ggstatsplot/man/ggbetweenstats.Rd                                              |   20 
 ggstatsplot-0.9.0/ggstatsplot/man/ggcoefstats.Rd                                                 |   32 
 ggstatsplot-0.9.0/ggstatsplot/man/ggcorrmat.Rd                                                   |   23 
 ggstatsplot-0.9.0/ggstatsplot/man/ggdotplotstats.Rd                                              |   16 
 ggstatsplot-0.9.0/ggstatsplot/man/gghistostats.Rd                                                |   19 
 ggstatsplot-0.9.0/ggstatsplot/man/ggpiestats.Rd                                                  |   31 
 ggstatsplot-0.9.0/ggstatsplot/man/ggscatterstats.Rd                                              |   89 
 ggstatsplot-0.9.0/ggstatsplot/man/ggstatsplot-package.Rd                                         |   16 
 ggstatsplot-0.9.0/ggstatsplot/man/ggwithinstats.Rd                                               |   34 
 ggstatsplot-0.9.0/ggstatsplot/man/grouped_ggbarstats.Rd                                          |   93 
 ggstatsplot-0.9.0/ggstatsplot/man/grouped_ggbetweenstats.Rd                                      |   96 
 ggstatsplot-0.9.0/ggstatsplot/man/grouped_ggcorrmat.Rd                                           |   57 
 ggstatsplot-0.9.0/ggstatsplot/man/grouped_ggdotplotstats.Rd                                      |   68 
 ggstatsplot-0.9.0/ggstatsplot/man/grouped_gghistostats.Rd                                        |   21 
 ggstatsplot-0.9.0/ggstatsplot/man/grouped_ggpiestats.Rd                                          |   83 
 ggstatsplot-0.9.0/ggstatsplot/man/grouped_ggscatterstats.Rd                                      |  121 -
 ggstatsplot-0.9.0/ggstatsplot/man/grouped_ggwithinstats.Rd                                       |  110 
 ggstatsplot-0.9.0/ggstatsplot/man/grouped_list.Rd                                                |    5 
 ggstatsplot-0.9.0/ggstatsplot/man/movies_long.Rd                                                 |    4 
 ggstatsplot-0.9.0/ggstatsplot/man/pairwise_comparisons.Rd                                        |only
 ggstatsplot-0.9.0/ggstatsplot/man/reexports.Rd                                                   |   10 
 ggstatsplot-0.9.0/ggstatsplot/man/theme_ggstatsplot.Rd                                           |   16 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat.R                                                   |    1 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/additional_args.md                           |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/combine_plots.md                             |    3 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/ggbarstats.md                                |    6 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/ggbetweenstats.md                            |   12 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/ggcoefstats                                  |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/ggcoefstats.md                               |  234 -
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/ggcorrmat.md                                 |   12 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/ggdotplotstats.md                            |    3 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/ggpiestats.md                                |   12 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/ggscatterstats                               |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/ggscatterstats.md                            |   98 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/ggwithinstats.md                             |   43 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/grouped_ggbetweenstats                       |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/grouped_ggcorrmat                            |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/grouped_ggcorrmat.md                         |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/grouped_ggpiestats                           |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/grouped_ggscatterstats                       |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/grouped_ggwithinstats                        |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/pairwise_comparisons_between.md              |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/pairwise_comparisons_within.md               |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/pairwise_ggsignif.md                         |  322 +-
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/vdiffr_figs/ggbarstats-works.svg             |    4 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/vdiffr_figs/ggbetweenstats-works.svg         |   40 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/vdiffr_figs/ggcoefstats-works.svg            |  186 -
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/vdiffr_figs/ggcorrmat-works-with-nas.svg     |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/vdiffr_figs/ggpiestats-works.svg             |  134 -
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/vdiffr_figs/ggscatterstats-works.svg         |  481 ++-
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/vdiffr_figs/grouped-ggbarstats-works.svg     |   10 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/vdiffr_figs/grouped-ggbetweenstats-works.svg |   65 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/vdiffr_figs/grouped-ggpiestats-works.svg     |  288 +-
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/vdiffr_figs/grouped-ggscatterstats-works.svg | 1210 ++++------
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/_snaps/z_ggcoefstats_dataframes.md                  |  186 -
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-additional_args.R                              |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-edge_case_null.R                               |   18 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-ggbarstats.R                                   |  153 -
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-ggbetweenstats.R                               |  174 -
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-ggcoefstats.R                                  |  142 -
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-ggcorrmat.R                                    |   65 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-ggdotplotstats.R                               |   99 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-gghistostats.R                                 |  140 -
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-ggpiestats.R                                   |  303 +-
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-ggscatterstats.R                               |  274 +-
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-ggwithinstats.R                                |  327 +-
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-grouped_ggbarstats.R                           |   31 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-grouped_ggbetweenstats.R                       |  119 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-grouped_ggcorrmat.R                            |   96 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-grouped_ggdotplotstats.R                       |   23 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-grouped_gghistostats.R                         |   30 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-grouped_ggpiestats.R                           |   81 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-grouped_ggscatterstats.R                       |  170 -
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-grouped_ggwithinstats.R                        |  209 -
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-pairwise_caption_helpers.R                     |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-pairwise_comparisons_between.R                 |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-pairwise_comparisons_within.R                  |only
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-pairwise_ggsignif.R                            |    7 
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-vdiffr_figs.R                                  |  247 +-
 ggstatsplot-0.9.0/ggstatsplot/tests/testthat/test-z_ggcoefstats_dataframes.R                     |  428 +--
 ggstatsplot-0.9.0/ggstatsplot/vignettes/additional.Rmd                                           |   77 
 ggstatsplot-0.9.0/ggstatsplot/vignettes/web_only/benchmarking.Rmd                                |    4 
 ggstatsplot-0.9.0/ggstatsplot/vignettes/web_only/dependencies.Rmd                                |   12 
 ggstatsplot-0.9.0/ggstatsplot/vignettes/web_only/faq.Rmd                                         |   99 
 ggstatsplot-0.9.0/ggstatsplot/vignettes/web_only/ggbetweenstats.Rmd                              |  134 -
 ggstatsplot-0.9.0/ggstatsplot/vignettes/web_only/ggcoefstats.Rmd                                 |  266 +-
 ggstatsplot-0.9.0/ggstatsplot/vignettes/web_only/ggcorrmat.Rmd                                   |   63 
 ggstatsplot-0.9.0/ggstatsplot/vignettes/web_only/ggdotplotstats.Rmd                              |   22 
 ggstatsplot-0.9.0/ggstatsplot/vignettes/web_only/gghistostats.Rmd                                |   19 
 ggstatsplot-0.9.0/ggstatsplot/vignettes/web_only/ggpiestats.Rmd                                  |   30 
 ggstatsplot-0.9.0/ggstatsplot/vignettes/web_only/ggscatterstats.Rmd                              |   60 
 ggstatsplot-0.9.0/ggstatsplot/vignettes/web_only/ggwithinstats.Rmd                               |  127 -
 ggstatsplot-0.9.0/ggstatsplot/vignettes/web_only/pairwise.Rmd                                    |only
 ggstatsplot-0.9.0/ggstatsplot/vignettes/web_only/principles.Rmd                                  |   48 
 ggstatsplot-0.9.0/ggstatsplot/vignettes/web_only/purrr_examples.Rmd                              |  340 +-
 176 files changed, 6142 insertions(+), 6496 deletions(-)

More information about ggstatsplot at CRAN
Permanent link

Package crosstable updated to version 0.2.2 with previous version 0.2.1 dated 2021-03-08

Title: Crosstables for Descriptive Analyses
Description: Create descriptive tables for continuous and categorical variables. Apply summary statistics and counting function, with or without a grouping variable, and create beautiful reports using 'rmarkdown' or 'officer'. You can also compute statistical tests and effect sizes if needed.
Author: Dan Chaltiel [aut, cre] (<https://orcid.org/0000-0003-3488-779X>), David Hajage [ccp]
Maintainer: Dan Chaltiel <dan.chaltiel@gmail.com>

Diff between crosstable versions 0.2.1 dated 2021-03-08 and 0.2.2 dated 2021-10-19

 crosstable-0.2.1/crosstable/R/summarise_survival.R                                                      |only
 crosstable-0.2.1/crosstable/R/summarize_categorical.R                                                   |only
 crosstable-0.2.1/crosstable/R/summarize_numeric.R                                                       |only
 crosstable-0.2.1/crosstable/man/body_add_table_legend.Rd                                                |only
 crosstable-0.2.1/crosstable/man/str_wrap2.Rd                                                            |only
 crosstable-0.2.2/crosstable/DESCRIPTION                                                                 |   21 
 crosstable-0.2.2/crosstable/MD5                                                                         |  197 -
 crosstable-0.2.2/crosstable/NAMESPACE                                                                   |   27 
 crosstable-0.2.2/crosstable/NEWS.md                                                                     |   31 
 crosstable-0.2.2/crosstable/R/burgled.R                                                                 |only
 crosstable-0.2.2/crosstable/R/compact.R                                                                 |    8 
 crosstable-0.2.2/crosstable/R/cross_by.R                                                                |   77 
 crosstable-0.2.2/crosstable/R/cross_categorical.R                                                       |  153 
 crosstable-0.2.2/crosstable/R/cross_numeric.R                                                           |  158 
 crosstable-0.2.2/crosstable/R/cross_survival.R                                                          |  126 
 crosstable-0.2.2/crosstable/R/crosstable-package.R                                                      |    1 
 crosstable-0.2.2/crosstable/R/crosstable.R                                                              |  334 +
 crosstable-0.2.2/crosstable/R/effect.R                                                                  |  511 +--
 crosstable-0.2.2/crosstable/R/flextable.R                                                               |  106 
 crosstable-0.2.2/crosstable/R/funs.R                                                                    |   31 
 crosstable-0.2.2/crosstable/R/gt.R                                                                      |   32 
 crosstable-0.2.2/crosstable/R/labels.R                                                                  |   36 
 crosstable-0.2.2/crosstable/R/officer.R                                                                 |  298 +
 crosstable-0.2.2/crosstable/R/openxlsx.R                                                                |  134 
 crosstable-0.2.2/crosstable/R/test.R                                                                    |   35 
 crosstable-0.2.2/crosstable/R/utils.R                                                                   |   95 
 crosstable-0.2.2/crosstable/README.md                                                                   |   88 
 crosstable-0.2.2/crosstable/build/vignette.rds                                                          |binary
 crosstable-0.2.2/crosstable/inst/WORDLIST                                                               |only
 crosstable-0.2.2/crosstable/inst/doc/crosstable-install.Rmd                                             |   23 
 crosstable-0.2.2/crosstable/inst/doc/crosstable-install.html                                            |   73 
 crosstable-0.2.2/crosstable/inst/doc/crosstable-report.R                                                |   27 
 crosstable-0.2.2/crosstable/inst/doc/crosstable-report.Rmd                                              |   81 
 crosstable-0.2.2/crosstable/inst/doc/crosstable-report.html                                             |  120 
 crosstable-0.2.2/crosstable/inst/doc/crosstable-selection.R                                             |   35 
 crosstable-0.2.2/crosstable/inst/doc/crosstable-selection.Rmd                                           |   58 
 crosstable-0.2.2/crosstable/inst/doc/crosstable-selection.html                                          |  409 --
 crosstable-0.2.2/crosstable/inst/doc/crosstable.R                                                       |   86 
 crosstable-0.2.2/crosstable/inst/doc/crosstable.Rmd                                                     |  210 -
 crosstable-0.2.2/crosstable/inst/doc/crosstable.html                                                    |  619 +--
 crosstable-0.2.2/crosstable/man/apply_labels.Rd                                                         |   59 
 crosstable-0.2.2/crosstable/man/as_flextable.Rd                                                         |  197 -
 crosstable-0.2.2/crosstable/man/as_gt.Rd                                                                |  141 
 crosstable-0.2.2/crosstable/man/as_workbook.Rd                                                          |   16 
 crosstable-0.2.2/crosstable/man/body_add_crosstable.Rd                                                  |   94 
 crosstable-0.2.2/crosstable/man/body_add_crosstable_footnote.Rd                                         |   39 
 crosstable-0.2.2/crosstable/man/body_add_gg2.Rd                                                         |  109 
 crosstable-0.2.2/crosstable/man/body_add_img2.Rd                                                        |   95 
 crosstable-0.2.2/crosstable/man/body_add_legend.Rd                                                      |only
 crosstable-0.2.2/crosstable/man/body_add_list.Rd                                                        |  104 
 crosstable-0.2.2/crosstable/man/body_add_normal.Rd                                                      |   84 
 crosstable-0.2.2/crosstable/man/body_add_title.Rd                                                       |    8 
 crosstable-0.2.2/crosstable/man/compact.Rd                                                              |  109 
 crosstable-0.2.2/crosstable/man/confint_numeric.Rd                                                      |    3 
 crosstable-0.2.2/crosstable/man/cross_summary.Rd                                                        |   57 
 crosstable-0.2.2/crosstable/man/crosstable-package.Rd                                                   |    4 
 crosstable-0.2.2/crosstable/man/crosstable.Rd                                                           |   42 
 crosstable-0.2.2/crosstable/man/crosstable_effect_args.Rd                                               |   50 
 crosstable-0.2.2/crosstable/man/crosstable_options.Rd                                                   |    1 
 crosstable-0.2.2/crosstable/man/crosstable_test_args.Rd                                                 |   84 
 crosstable-0.2.2/crosstable/man/display_effect.Rd                                                       |   41 
 crosstable-0.2.2/crosstable/man/display_test.Rd                                                         |   45 
 crosstable-0.2.2/crosstable/man/docx_bookmarks2.Rd                                                      |    8 
 crosstable-0.2.2/crosstable/man/effect_summary.Rd                                                       |  106 
 crosstable-0.2.2/crosstable/man/effect_survival.Rd                                                      |   45 
 crosstable-0.2.2/crosstable/man/effect_tabular.Rd                                                       |   87 
 crosstable-0.2.2/crosstable/man/format_fixed.Rd                                                         |    7 
 crosstable-0.2.2/crosstable/man/generate_autofit_macro.Rd                                               |only
 crosstable-0.2.2/crosstable/man/get_label.Rd                                                            |    3 
 crosstable-0.2.2/crosstable/man/import_labels.Rd                                                        |    7 
 crosstable-0.2.2/crosstable/man/peek.Rd                                                                 |   43 
 crosstable-0.2.2/crosstable/man/remove_labels.Rd                                                        |   53 
 crosstable-0.2.2/crosstable/man/rename_dataframe_with_labels.Rd                                         |   49 
 crosstable-0.2.2/crosstable/man/set_label.Rd                                                            |   10 
 crosstable-0.2.2/crosstable/man/summaryFunctions.Rd                                                     |  200 -
 crosstable-0.2.2/crosstable/man/test_correlation_auto.Rd                                                |    3 
 crosstable-0.2.2/crosstable/man/test_summarize_auto.Rd                                                  |   46 
 crosstable-0.2.2/crosstable/man/test_survival_logrank.Rd                                                |   40 
 crosstable-0.2.2/crosstable/man/test_tabular_auto.Rd                                                    |   46 
 crosstable-0.2.2/crosstable/tests/testthat/_snaps/1-crosstable.md                                       | 1703 ----------
 crosstable-0.2.2/crosstable/tests/testthat/_snaps/1-effects.md                                          |only
 crosstable-0.2.2/crosstable/tests/testthat/_snaps/1-tests.md                                            |only
 crosstable-0.2.2/crosstable/tests/testthat/_snaps/4-officer.md                                          |  286 +
 crosstable-0.2.2/crosstable/tests/testthat/docx/4-officer/snap_crosstables_double_with_effects.docx     |binary
 crosstable-0.2.2/crosstable/tests/testthat/docx/4-officer/snap_crosstables_double_with_effects_new.docx |only
 crosstable-0.2.2/crosstable/tests/testthat/docx/4-officer/snap_crosstables_helpers.docx                 |binary
 crosstable-0.2.2/crosstable/tests/testthat/docx/4-officer/snap_crosstables_simple.docx                  |binary
 crosstable-0.2.2/crosstable/tests/testthat/docx/4-officer/snap_crosstables_simple_new.docx              |only
 crosstable-0.2.2/crosstable/tests/testthat/docx/4-officer/snap_crosstables_triple.docx                  |binary
 crosstable-0.2.2/crosstable/tests/testthat/docx/4-officer/snap_crosstables_triple_new.docx              |only
 crosstable-0.2.2/crosstable/tests/testthat/docx/4-officer/snap_utils_functions.docx                     |binary
 crosstable-0.2.2/crosstable/tests/testthat/docx/4-officer/snap_utils_functions_new.docx                 |only
 crosstable-0.2.2/crosstable/tests/testthat/helper-init_dataset.R                                        |   46 
 crosstable-0.2.2/crosstable/tests/testthat/test-1-crosstable.R                                          |  448 --
 crosstable-0.2.2/crosstable/tests/testthat/test-1-effects.R                                             |only
 crosstable-0.2.2/crosstable/tests/testthat/test-1-tests.R                                               |only
 crosstable-0.2.2/crosstable/tests/testthat/test-2-selection.R                                           |    8 
 crosstable-0.2.2/crosstable/tests/testthat/test-3-compact.R                                             |   18 
 crosstable-0.2.2/crosstable/tests/testthat/test-4-officer.R                                             |  122 
 crosstable-0.2.2/crosstable/tests/testthat/xlsx/test_openxlsx1.xlsx                                     |binary
 crosstable-0.2.2/crosstable/tests/testthat/xlsx/test_openxlsx2.xlsx                                     |binary
 crosstable-0.2.2/crosstable/tests/testthat/xlsx/test_openxlsx3.xlsx                                     |binary
 crosstable-0.2.2/crosstable/tests/testthat/xlsx/test_openxlsx4.xlsx                                     |binary
 crosstable-0.2.2/crosstable/tests/testthat/xlsx/test_openxlsx5.xlsx                                     |only
 crosstable-0.2.2/crosstable/tests/testthat/xlsx/test_openxlsx6.xlsx                                     |only
 crosstable-0.2.2/crosstable/vignettes/crosstable-install.Rmd                                            |   23 
 crosstable-0.2.2/crosstable/vignettes/crosstable-report.Rmd                                             |   81 
 crosstable-0.2.2/crosstable/vignettes/crosstable-selection.Rmd                                          |   58 
 crosstable-0.2.2/crosstable/vignettes/crosstable.Rmd                                                    |  210 -
 109 files changed, 4440 insertions(+), 4938 deletions(-)

More information about crosstable at CRAN
Permanent link

Package pairwiseComparisons updated to version 3.2.0 with previous version 3.1.6 dated 2021-06-01

Title: Multiple Pairwise Comparison Tests
Description: Multiple pairwise comparison tests on tidy data for one-way analysis of variance for both between-subjects and within-subjects designs. Currently, it supports only the most common types of statistical analyses and tests: parametric (Welch's and Student's t-test), nonparametric (Durbin-Conover and Dunn test), robust (Yuen’s trimmed means test), and Bayes Factor (Student's t-test).
Author: Indrajeet Patil [cre, aut, cph] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>

Diff between pairwiseComparisons versions 3.1.6 dated 2021-06-01 and 3.2.0 dated 2021-10-19

 pairwiseComparisons-3.1.6/pairwiseComparisons/R/data.R                                              |only
 pairwiseComparisons-3.1.6/pairwiseComparisons/R/helpers.R                                           |only
 pairwiseComparisons-3.1.6/pairwiseComparisons/data                                                  |only
 pairwiseComparisons-3.1.6/pairwiseComparisons/man/bugs_long.Rd                                      |only
 pairwiseComparisons-3.1.6/pairwiseComparisons/man/movies_long.Rd                                    |only
 pairwiseComparisons-3.1.6/pairwiseComparisons/man/movies_wide.Rd                                    |only
 pairwiseComparisons-3.2.0/pairwiseComparisons/DESCRIPTION                                           |   19 
 pairwiseComparisons-3.2.0/pairwiseComparisons/LICENSE                                               |    4 
 pairwiseComparisons-3.2.0/pairwiseComparisons/MD5                                                   |   59 
 pairwiseComparisons-3.2.0/pairwiseComparisons/NAMESPACE                                             |   87 
 pairwiseComparisons-3.2.0/pairwiseComparisons/NEWS.md                                               |  292 +-
 pairwiseComparisons-3.2.0/pairwiseComparisons/R/attach.R                                            |only
 pairwiseComparisons-3.2.0/pairwiseComparisons/R/global_vars.R                                       |   37 
 pairwiseComparisons-3.2.0/pairwiseComparisons/R/pairwise_comparisons.R                              |  767 +++---
 pairwiseComparisons-3.2.0/pairwiseComparisons/R/reexports.R                                         |   54 
 pairwiseComparisons-3.2.0/pairwiseComparisons/README.md                                             | 1120 ++++------
 pairwiseComparisons-3.2.0/pairwiseComparisons/inst/CITATION                                         |   10 
 pairwiseComparisons-3.2.0/pairwiseComparisons/inst/WORDLIST                                         |   69 
 pairwiseComparisons-3.2.0/pairwiseComparisons/man/figures/README-ggsignif-1.png                     |binary
 pairwiseComparisons-3.2.0/pairwiseComparisons/man/figures/README-ggsignif2-1.png                    |binary
 pairwiseComparisons-3.2.0/pairwiseComparisons/man/p_adjust_text.Rd                                  |   48 
 pairwiseComparisons-3.2.0/pairwiseComparisons/man/pairwise_caption.Rd                               |   75 
 pairwiseComparisons-3.2.0/pairwiseComparisons/man/pairwise_comparisons.Rd                           |  443 +--
 pairwiseComparisons-3.2.0/pairwiseComparisons/man/reexports.Rd                                      |   46 
 pairwiseComparisons-3.2.0/pairwiseComparisons/tests/spelling.R                                      |   12 
 pairwiseComparisons-3.2.0/pairwiseComparisons/tests/testthat.R                                      |    9 
 pairwiseComparisons-3.2.0/pairwiseComparisons/tests/testthat/_snaps/additional_args.md              |  140 -
 pairwiseComparisons-3.2.0/pairwiseComparisons/tests/testthat/_snaps/pairwise_comparisons_between.md |  238 +-
 pairwiseComparisons-3.2.0/pairwiseComparisons/tests/testthat/_snaps/pairwise_comparisons_within.md  |  294 +-
 pairwiseComparisons-3.2.0/pairwiseComparisons/tests/testthat/test-additional_args.R                 |  108 
 pairwiseComparisons-3.2.0/pairwiseComparisons/tests/testthat/test-pairwise_caption_helpers.R        |  118 -
 pairwiseComparisons-3.2.0/pairwiseComparisons/tests/testthat/test-pairwise_comparisons_between.R    |  612 ++---
 pairwiseComparisons-3.2.0/pairwiseComparisons/tests/testthat/test-pairwise_comparisons_within.R     |  408 +--
 33 files changed, 2517 insertions(+), 2552 deletions(-)

More information about pairwiseComparisons at CRAN
Permanent link

New package BayesXsrc with initial version 3.0-1.1
Package: BayesXsrc
Version: 3.0-1.1
Date: 2018-04-13
Title: R Package Distribution of the BayesX C++ Sources
Description: BayesX performs Bayesian inference in structured additive regression (STAR) models. The R package BayesXsrc provides the BayesX command line tool for easy installation. A convenient R interface is provided in package R2BayesX.
Depends: R (>= 2.8.0)
Suggests: R2BayesX
SystemRequirements: GNU make
License: GPL-2 | GPL-3
URL: http://www.BayesX.org/
NeedsCompilation: yes
Packaged: 2021-10-18 17:26:24 UTC; hornik
Author: Nikolaus Umlauf [aut, cre], Daniel Adler [aut], Thomas Kneib [aut], Stefan Lang [aut], Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
Repository: CRAN
Date/Publication: 2021-10-19 09:33:24 UTC

More information about BayesXsrc at CRAN
Permanent link

Package statsExpressions updated to version 1.2.0 with previous version 1.1.0 dated 2021-05-30

Title: Tidy Dataframes and Expressions with Statistical Details
Description: Utilities for producing dataframes with rich details for the most common types of statistical approaches and tests: parametric, nonparametric, robust, and Bayesian t-test, one-way ANOVA, correlation analyses, contingency table analyses, and meta-analyses. The functions are pipe-friendly and provide a consistent syntax to work with tidy data. These dataframes additionally contain expressions with statistical details, and can be used in graphing packages. This package also forms the statistical processing backend for 'ggstatsplot'.
Author: Indrajeet Patil [cre, aut, cph] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>

Diff between statsExpressions versions 1.1.0 dated 2021-05-30 and 1.2.0 dated 2021-10-19

 statsExpressions-1.1.0/statsExpressions/R/bf_extractor.R                                    |only
 statsExpressions-1.1.0/statsExpressions/data/VR_dilemma.rdata                               |only
 statsExpressions-1.1.0/statsExpressions/man/VR_dilemma.Rd                                   |only
 statsExpressions-1.1.0/statsExpressions/man/bf_extractor.Rd                                 |only
 statsExpressions-1.1.0/statsExpressions/man/tidy_model_effectsize.Rd                        |only
 statsExpressions-1.1.0/statsExpressions/tests/testthat/test-bf_extractor.R                  |only
 statsExpressions-1.2.0/statsExpressions/DESCRIPTION                                         |   22 
 statsExpressions-1.2.0/statsExpressions/LICENSE                                             |    4 
 statsExpressions-1.2.0/statsExpressions/MD5                                                 |  193 -
 statsExpressions-1.2.0/statsExpressions/NAMESPACE                                           |  145 
 statsExpressions-1.2.0/statsExpressions/NEWS.md                                             |  740 ++--
 statsExpressions-1.2.0/statsExpressions/R/centrality_description.R                          |only
 statsExpressions-1.2.0/statsExpressions/R/contingency_table.R                               |  495 +-
 statsExpressions-1.2.0/statsExpressions/R/corr_test.R                                       |  184 -
 statsExpressions-1.2.0/statsExpressions/R/data.R                                            |  286 -
 statsExpressions-1.2.0/statsExpressions/R/global_vars.R                                     |   70 
 statsExpressions-1.2.0/statsExpressions/R/helpers_easystats.R                               |  121 
 statsExpressions-1.2.0/statsExpressions/R/helpers_expr_templates.R                          |  675 +--
 statsExpressions-1.2.0/statsExpressions/R/long_to_wide_converter.R                          |only
 statsExpressions-1.2.0/statsExpressions/R/meta_analysis.R                                   |  234 -
 statsExpressions-1.2.0/statsExpressions/R/one_sample_test.R                                 |  379 +-
 statsExpressions-1.2.0/statsExpressions/R/oneway_anova.R                                    |  677 +--
 statsExpressions-1.2.0/statsExpressions/R/reexports.R                                       |  106 
 statsExpressions-1.2.0/statsExpressions/R/statsExpressions-package.R                        |   65 
 statsExpressions-1.2.0/statsExpressions/R/tidy_model_expressions.R                          |only
 statsExpressions-1.2.0/statsExpressions/R/two_sample_test.R                                 |  511 +-
 statsExpressions-1.2.0/statsExpressions/R/utils.R                                           |only
 statsExpressions-1.2.0/statsExpressions/README.md                                           | 1380 ++++----
 statsExpressions-1.2.0/statsExpressions/build/vignette.rds                                  |binary
 statsExpressions-1.2.0/statsExpressions/inst/CITATION                                       |   28 
 statsExpressions-1.2.0/statsExpressions/inst/WORDLIST                                       |  151 
 statsExpressions-1.2.0/statsExpressions/inst/doc/stats_details.R                            |   16 
 statsExpressions-1.2.0/statsExpressions/inst/doc/stats_details.Rmd                          |  499 +-
 statsExpressions-1.2.0/statsExpressions/inst/doc/stats_details.html                         | 1704 +++++-----
 statsExpressions-1.2.0/statsExpressions/man/bugs_long.Rd                                    |   86 
 statsExpressions-1.2.0/statsExpressions/man/centrality_description.Rd                       |only
 statsExpressions-1.2.0/statsExpressions/man/contingency_table.Rd                            |  274 -
 statsExpressions-1.2.0/statsExpressions/man/corr_test.Rd                                    |  188 -
 statsExpressions-1.2.0/statsExpressions/man/expr_template.Rd                                |  245 -
 statsExpressions-1.2.0/statsExpressions/man/figures/README-anova_parametric2-1.png          |binary
 statsExpressions-1.2.0/statsExpressions/man/figures/README-anova_rob1-1.png                 |binary
 statsExpressions-1.2.0/statsExpressions/man/figures/README-centrality-1.png                 |only
 statsExpressions-1.2.0/statsExpressions/man/figures/README-corr-1.png                       |binary
 statsExpressions-1.2.0/statsExpressions/man/figures/README-custom_expr-1.png                |binary
 statsExpressions-1.2.0/statsExpressions/man/figures/README-gof-1.png                        |binary
 statsExpressions-1.2.0/statsExpressions/man/figures/README-metaanalysis-1.png               |binary
 statsExpressions-1.2.0/statsExpressions/man/figures/README-t_one-1.png                      |binary
 statsExpressions-1.2.0/statsExpressions/man/figures/README-t_two-1.png                      |binary
 statsExpressions-1.2.0/statsExpressions/man/figures/README-t_two_paired1-1.png              |binary
 statsExpressions-1.2.0/statsExpressions/man/format_num.Rd                                   |only
 statsExpressions-1.2.0/statsExpressions/man/iris_long.Rd                                    |   82 
 statsExpressions-1.2.0/statsExpressions/man/long_to_wide_converter.Rd                       |only
 statsExpressions-1.2.0/statsExpressions/man/meta_analysis.Rd                                |  213 -
 statsExpressions-1.2.0/statsExpressions/man/movies_long.Rd                                  |   92 
 statsExpressions-1.2.0/statsExpressions/man/movies_wide.Rd                                  |   96 
 statsExpressions-1.2.0/statsExpressions/man/one_sample_test.Rd                              |  284 -
 statsExpressions-1.2.0/statsExpressions/man/oneway_anova.Rd                                 |  404 +-
 statsExpressions-1.2.0/statsExpressions/man/reexports.Rd                                    |   70 
 statsExpressions-1.2.0/statsExpressions/man/statsExpressions-package.Rd                     |   86 
 statsExpressions-1.2.0/statsExpressions/man/stats_type_switch.Rd                            |only
 statsExpressions-1.2.0/statsExpressions/man/tidy_model_expressions.Rd                       |only
 statsExpressions-1.2.0/statsExpressions/man/tidy_model_parameters.Rd                        |   50 
 statsExpressions-1.2.0/statsExpressions/man/two_sample_test.Rd                              |  398 +-
 statsExpressions-1.2.0/statsExpressions/tests/spelling.R                                    |   12 
 statsExpressions-1.2.0/statsExpressions/tests/testthat.R                                    |    9 
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/centrality_description.md     |only
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/contingency_table.md          |  485 +-
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/corr_test.md                  |  232 -
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/format_num.md                 |only
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/long_to_wide_converter.md     |only
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/meta_random_parametric.md     |   46 
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/meta_random_robust.md         |   49 
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/one_sample.md                 |  327 -
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/one_two_sample_dataframes.md  |  238 -
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/oneway_anova_bayes.md         |   80 
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/oneway_anova_nonparametric.md |  144 
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/oneway_anova_parametric.md    |  200 -
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/oneway_anova_robust.md        |  165 
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/tidy_model_expressions.md     |only
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/tidy_model_expressions_F.md   |only
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/two_sample_bayes.md           |   42 
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/two_sample_nonparametric.md   |   92 
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/two_sample_parametric.md      |  205 -
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/two_sample_robust.md          |  214 -
 statsExpressions-1.2.0/statsExpressions/tests/testthat/_snaps/z_meta_random_bayes.md        |   20 
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-centrality_description.R        |only
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-contingency_table.R             |  653 +--
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-corr_test.R                     |  304 -
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-format_num.R                    |only
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-grouped_dataframes.R            |   90 
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-long_to_wide_converter.R        |only
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-loop_execution.R                |  105 
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-loop_execution_bayes.R          |  190 -
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-meta_random_parametric.R        |   62 
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-meta_random_robust.R            |   60 
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-one_sample.R                    |  350 +-
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-one_two_sample_dataframes.R     |  205 -
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-oneway_anova_bayes.R            |  391 +-
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-oneway_anova_nonparametric.R    |  292 -
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-oneway_anova_parametric.R       |  439 +-
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-oneway_anova_robust.R           |  141 
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-stats_type_switch.R             |only
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-tidy_model_expressions.R        |only
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-tidy_model_expressions_F.R      |only
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-two_sample_bayes.R              |  281 -
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-two_sample_nonparametric.R      |  288 -
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-two_sample_parametric.R         |  332 -
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-two_sample_robust.R             |  316 -
 statsExpressions-1.2.0/statsExpressions/tests/testthat/test-z_meta_random_bayes.R           |  124 
 statsExpressions-1.2.0/statsExpressions/vignettes/stats_details.Rmd                         |  499 +-
 statsExpressions-1.2.0/statsExpressions/vignettes/web_only/dataframe_outputs.Rmd            | 1168 +++---
 111 files changed, 10012 insertions(+), 10091 deletions(-)

More information about statsExpressions at CRAN
Permanent link

New package visxhclust with initial version 1.0.0
Package: visxhclust
Title: A Shiny App for Visual Exploration of Hierarchical Clustering
Version: 1.0.0
Maintainer: Rafael Henkin <r.henkin@qmul.ac.uk>
Description: A Shiny application and functions for visual exploration of hierarchical clustering with numeric datasets. Allows users to iterative set hyperparameters, select features and evaluate results through various plots and computation of evaluation criteria.
License: GPL-3
URL: https://github.com/rhenkin/visxhclust
BugReports: https://github.com/rhenkin/visxhclust/issues
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0)
biocViews:
Imports: shiny, shinyhelper, shinycssloaders, bsplus, DT, ggplot2, dplyr, readr, tidyr, cluster, fastcluster, clusterCrit, dunn.test, RColorBrewer, dendextend, ComplexHeatmap, circlize, patchwork, knitr, kableExtra
Suggests: testthat (>= 3.0.0), rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-10-18 14:50:38 UTC; rafaelhenkin
Author: Rafael Henkin [aut, cre]
Repository: CRAN
Date/Publication: 2021-10-19 07:20:02 UTC

More information about visxhclust at CRAN
Permanent link

New package QBMS with initial version 0.6
Package: QBMS
Version: 0.6
Date: 2021-10-08
Title: Query the Breeding Management System 'BMS'
Author: Khaled Al-Shamaa [aut, cre], Mariano Omar Crimi [ctb], Zakaria Kehel [ctb], ICARDA [cph]
Maintainer: Khaled Al-Shamaa <k.el-shamaa@cgiar.org>
Depends: R (>= 3.1.0)
Description: Query the Breeding Management System 'BMS' database (using 'BrAPI' calls) to help breeders as targeted end-users retrieving data directly into their analyzing pipelines.
License: GPL (>= 3)
URL: https://github.com/icarda-git/QBMS
BugReports: https://github.com/icarda-git/QBMS/issues
LazyData: FALSE
Imports: utils, httr, tcltk, jsonlite
NeedsCompilation: no
Encoding: UTF-8
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Packaged: 2021-10-18 11:10:57 UTC; Kel-shamaa
Repository: CRAN
Date/Publication: 2021-10-19 07:20:08 UTC

More information about QBMS at CRAN
Permanent link

Package PMwR updated to version 0.17-0 with previous version 0.16-1 dated 2021-09-18

Title: Portfolio Management with R
Description: Functions and examples for 'Portfolio Management with R': backtesting investment and trading strategies, computing profit/loss and returns, analysing trades, handling lists of transactions, reporting, and more.
Author: Enrico Schumann [aut, cre] (<https://orcid.org/0000-0001-7601-6576>)
Maintainer: Enrico Schumann <es@enricoschumann.net>

Diff between PMwR versions 0.16-1 dated 2021-09-18 and 0.17-0 dated 2021-10-19

 PMwR-0.16-1/PMwR/tests/README                           |only
 PMwR-0.17-0/PMwR/ChangeLog                              |   50 +++++
 PMwR-0.17-0/PMwR/DESCRIPTION                            |    8 
 PMwR-0.17-0/PMwR/MD5                                    |   64 +++----
 PMwR-0.17-0/PMwR/NEWS                                   |   20 ++
 PMwR-0.17-0/PMwR/R/internal.R                           |   10 -
 PMwR-0.17-0/PMwR/R/is_valid_ISIN.R                      |    4 
 PMwR-0.17-0/PMwR/R/plot_trading_hours.R                 |   12 -
 PMwR-0.17-0/PMwR/R/rc.R                                 |only
 PMwR-0.17-0/PMwR/R/rebalance.R                          |   34 +++
 PMwR-0.17-0/PMwR/R/returns.R                            |   83 +++------
 PMwR-0.17-0/PMwR/inst/CITATION                          |    4 
 PMwR-0.17-0/PMwR/inst/doc/An_overview_of_PMwR.R         |    6 
 PMwR-0.17-0/PMwR/inst/doc/An_overview_of_PMwR.Rnw       |  140 +++++++++++++---
 PMwR-0.17-0/PMwR/inst/doc/An_overview_of_PMwR.pdf       |binary
 PMwR-0.17-0/PMwR/inst/doc/Computing_returns.pdf         |binary
 PMwR-0.17-0/PMwR/inst/doc/Drawdowns_streaks.pdf         |binary
 PMwR-0.17-0/PMwR/inst/doc/FinTeX.pdf                    |binary
 PMwR-0.17-0/PMwR/inst/doc/pl_open_positions.pdf         |binary
 PMwR-0.17-0/PMwR/inst/doc/q32.pdf                       |binary
 PMwR-0.17-0/PMwR/inst/tinytest/test_rc.R                |   80 +++++++++
 PMwR-0.17-0/PMwR/inst/tinytest/test_returns.R           |    8 
 PMwR-0.17-0/PMwR/inst/tinytest/test_returns_dataframe.R |    7 
 PMwR-0.17-0/PMwR/inst/tinytest/test_returns_rebalance.R |   13 +
 PMwR-0.17-0/PMwR/man/PMwR-package.Rd                    |    2 
 PMwR-0.17-0/PMwR/man/instrument.Rd                      |    8 
 PMwR-0.17-0/PMwR/man/position.Rd                        |   18 +-
 PMwR-0.17-0/PMwR/man/quote32.Rd                         |    1 
 PMwR-0.17-0/PMwR/man/rc.Rd                              |   57 ++++--
 PMwR-0.17-0/PMwR/man/returns.Rd                         |   11 -
 PMwR-0.17-0/PMwR/man/scale1.Rd                          |    6 
 PMwR-0.17-0/PMwR/man/trade-analysis.Rd                  |    2 
 PMwR-0.17-0/PMwR/man/valuation.Rd                       |    6 
 PMwR-0.17-0/PMwR/vignettes/An_overview_of_PMwR.Rnw      |  140 +++++++++++++---
 34 files changed, 593 insertions(+), 201 deletions(-)

More information about PMwR at CRAN
Permanent link

New package npcs with initial version 0.1.0
Package: npcs
Title: Neyman-Pearson Classification via Cost-Sensitive Learning
Version: 0.1.0
Description: We connect the multi-class Neyman-Pearson classification (NP) problem to the cost-sensitive learning (CS) problem, and propose two algorithms (NPMC-CX and NPMC-ER) to solve the multi-class NP problem through cost-sensitive learning tools. Under certain conditions, the two algorithms are shown to satisfy multi-class NP properties. More details are available in the paper "Neyman-Pearson Multi-class Classification via Cost-sensitive Learning" (Ye Tian and Yang Feng, 2021), which will be posted on arXiv soon.
Imports: dfoptim, nnet, randomForest, e1071, magrittr, MASS, smotefamily, rpart, foreach, naivebayes, caret, formatR
License: GPL-2
Depends: R (>= 3.5.0)
Encoding: UTF-8
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-10-18 14:16:01 UTC; yetian
Author: Ye Tian [aut, cre], Yang Feng [aut]
Maintainer: Ye Tian <ye.t@columbia.edu>
Repository: CRAN
Date/Publication: 2021-10-19 07:20:05 UTC

More information about npcs at CRAN
Permanent link

New package Platypus with initial version 3.2.3
Package: Platypus
Title: Single-Cell Immune Repertoire and Gene Expression Analysis
Description: We present 'Platypus', an open-source software platform providing a user-friendly interface to investigate B-cell receptor and T-cell receptor repertoires from scSeq experiments. 'Platypus' provides a framework to automate and ease the analysis of single-cell immune repertoires while also incorporating transcriptional information involving unsupervised clustering, gene expression and gene ontology (Yermanos A, et al (2021) <doi:10.1093/nargab/lqab023>).
Version: 3.2.3
Date: 2021-09-23
Maintainer: Alexander Yermanos <ayermanos@gmail.com>
Depends: R(>= 3.5.0)
Imports: BiocGenerics, Biostrings, dplyr, ggplot2, knitr, jsonlite, Matrix, plyr, reshape2, rmarkdown, seqinr, Seurat, SeuratObject, stringr, tibble, tidyr, utils, useful
Suggests: AnnotationDbi, ape, circlize, cowplot, data.table, doParallel, fda.usc, fgsea, ggrepel, ggridges, ggseqlogo, grid, gridExtra, harmony, igraph, IRanges, limma, keras, methods, msigdbr, org.Mm.eg.db, pheatmap, phytools, purrr, scales, SummarizedExperiment, stringdist, tensorflow, vegan, testthat (>= 3.0.0)
License: GPL-2
Encoding: UTF-8
VignetteBuilder: knitr
LazyData: true
NeedsCompilation: no
Packaged: 2021-10-18 02:39:18 UTC; vickr
Author: Alexander Yermanos [aut, cre], Andreas Agrafiotis [ctb], Raphael Kuhn [ctb], Victor Kreiner [ctb], Damiano Robbiani [ctb], Josephine Yates [ctb], Jiami Han [ctb], Chrysa Papadopoulou [ctb], Cédric Weber [ctb], Danielle Shlesinger [ctb], Raphael Dizerens [ctb]
Repository: CRAN
Date/Publication: 2021-10-19 07:00:02 UTC

More information about Platypus at CRAN
Permanent link

Package cjbart (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-05-25 0.1.0

Permanent link
Package gfmR (with last version 1.1-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-03-14 1.1-0
2017-05-20 1.0-1

Permanent link
Package supernova (with last version 2.4.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-07-25 2.4.2
2021-05-29 2.4.1
2021-05-04 2.4.0
2021-01-12 2.3.0
2020-11-04 2.2.3
2019-09-26 2.1.1
2019-01-29 2.0.0
2018-06-16 1.1
2018-02-23 1.0

Permanent link
Package UncertainInterval (with last version 0.7.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-03-02 0.7.0
2020-04-16 0.6.0
2020-03-05 0.5.2
2019-07-25 0.5.0
2018-04-03 0.4.7
2018-02-27 0.4.6
2017-01-19 0.3.0

Permanent link
Package gen3sis (with last version 1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-07-12 1.3
2020-12-15 1.2
2020-08-29 1.1
2020-07-10 1.0

Permanent link
Package RDFTensor (with last version 1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-01-13 1.3
2020-05-31 1.2
2019-01-11 1.1
2018-11-27 1.0

Permanent link
Package polyglot (with last version 0.3.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-05-18 0.3.0
2018-11-01 0.2.1
2018-03-19 0.1.1
2018-03-19 0.1.2

Permanent link
Package amber (with last version 1.0.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-08-28 1.0.3

Permanent link
Package targeted (with last version 0.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-05-15 0.1.1
2020-05-08 0.1

Permanent link
Package connections (with last version 0.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-02-07 0.1.1
2019-10-28 0.1.0

Permanent link
Package IceCast (with last version 2.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-06-24 2.1.0
2017-08-16 1.2.0
2017-06-23 1.1.0

Permanent link
Package MHTcop (with last version 0.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-01-21 0.1.1
2018-04-05 0.1.0

Permanent link
Package CoordinateCleaner (with last version 2.0-18) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-10-14 2.0-18

Permanent link
Package QuantumClone (with last version 1.0.0.6) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-11-13 1.0.0.6
2017-03-08 1.0.0.4
2017-03-02 1.0.0.3
2016-08-26 0.16.8.19
2015-11-03 0.15.11
2015-09-15 0.9.15
2015-06-12 0.6.15

Permanent link
Package GEVACO (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-12-03 1.0.0

Permanent link
Package ACSNMineR (with last version 0.16.8.25) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-09-01 0.16.8.25
2016-02-12 0.16.01.29
2015-11-24 0.15.11
2015-10-27 0.10.15

Permanent link
Package MetaboLouise (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-11-30 1.0.0

Permanent link
Package LexisNexisTools (with last version 0.3.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-04-06 0.3.4
2020-12-13 0.3.3
2020-10-17 0.3.2
2020-06-03 0.3.1
2020-01-09 0.3.0
2019-07-09 0.2.3
2019-01-27 0.2.2
2019-01-21 0.2.1
2018-09-10 0.2.0
2018-04-09 0.1.2

Permanent link
Package solaR updated to version 0.46 with previous version 0.45 dated 2020-01-19

Title: Radiation and Photovoltaic Systems
Description: Calculation methods of solar radiation and performance of photovoltaic systems from daily and intradaily irradiation data sources.
Author: Oscar Perpiñán Lamigueiro [cre, aut] (<https://orcid.org/0000-0002-4134-7196>)
Maintainer: Oscar Perpiñán Lamigueiro <oscar.perpinan@upm.es>

Diff between solaR versions 0.45 dated 2020-01-19 and 0.46 dated 2021-10-19

 DESCRIPTION                  |    8 ++--
 MD5                          |   73 +++++++++++++++++++++----------------------
 R/fSolD.R                    |    2 -
 README.md                    |   36 +++++++++++----------
 build                        |only
 inst/CITATION                |   26 +++++++--------
 man/G0-class.Rd              |    4 +-
 man/Gef-class.Rd             |    4 +-
 man/HQCurve.Rd               |    4 +-
 man/NmgSFB.Rd                |    4 +-
 man/ProdGCPV-class.Rd        |    4 +-
 man/ProdPVPS-class.Rd        |    4 +-
 man/Shade-class.Rd           |    6 +--
 man/Sol-class.Rd             |    4 +-
 man/calcG0.Rd                |    4 +-
 man/calcGef.Rd               |    4 +-
 man/calcShd.Rd               |    4 +-
 man/calcSol.Rd               |    8 ++--
 man/compareLosses-methods.Rd |    4 +-
 man/defunct.Rd               |    2 -
 man/fBTd.Rd                  |    4 +-
 man/fCompD.Rd                |    4 +-
 man/fCompI.Rd                |    4 +-
 man/fInclin.Rd               |    4 +-
 man/fProd.Rd                 |    4 +-
 man/fPump.Rd                 |    4 +-
 man/fSolD.Rd                 |    8 ++--
 man/fSolI.Rd                 |    8 ++--
 man/fSombra.Rd               |    4 +-
 man/fTemp.Rd                 |    4 +-
 man/fTheta.Rd                |    4 +-
 man/local2UTC.Rd             |    4 +-
 man/optimShd.Rd              |    4 +-
 man/prodExample.Rd           |    2 -
 man/prodGCPV.Rd              |    4 +-
 man/prodPVPS.Rd              |    4 +-
 man/pumpCoef.Rd              |    6 +--
 man/solaR-package.Rd         |    5 ++
 38 files changed, 146 insertions(+), 140 deletions(-)

More information about solaR at CRAN
Permanent link

Package Rd2roxygen updated to version 1.12 with previous version 1.11 dated 2020-06-24

Title: Convert Rd to 'Roxygen' Documentation
Description: Functions to convert Rd to 'roxygen' documentation. It can parse an Rd file to a list, create the 'roxygen' documentation and update the original R script (e.g. the one containing the definition of the function) accordingly. This package also provides utilities that can help developers build packages using 'roxygen' more easily. The 'formatR' package can be used to reformat the R code in the examples sections so that the code will be more readable.
Author: Hadley Wickham [aut], Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>)
Maintainer: Yihui Xie <xie@yihui.name>

Diff between Rd2roxygen versions 1.11 dated 2020-06-24 and 1.12 dated 2021-10-19

 Rd2roxygen-1.11/Rd2roxygen/NEWS                     |only
 Rd2roxygen-1.12/Rd2roxygen/DESCRIPTION              |    8 
 Rd2roxygen-1.12/Rd2roxygen/MD5                      |   18 -
 Rd2roxygen-1.12/Rd2roxygen/NEWS.md                  |only
 Rd2roxygen-1.12/Rd2roxygen/R/build.R                |    2 
 Rd2roxygen-1.12/Rd2roxygen/R/utils.R                |   23 -
 Rd2roxygen-1.12/Rd2roxygen/README.md                |    4 
 Rd2roxygen-1.12/Rd2roxygen/build/vignette.rds       |binary
 Rd2roxygen-1.12/Rd2roxygen/inst/doc/Rd2roxygen.Rmd  |    6 
 Rd2roxygen-1.12/Rd2roxygen/inst/doc/Rd2roxygen.html |  330 +++-----------------
 Rd2roxygen-1.12/Rd2roxygen/vignettes/Rd2roxygen.Rmd |    6 
 11 files changed, 87 insertions(+), 310 deletions(-)

More information about Rd2roxygen at CRAN
Permanent link

Package RcmdrPlugin.BWS1 updated to version 0.1-5 with previous version 0.1-4 dated 2020-12-17

Title: R Commander Plug-in for Case 1 (Object Case) Best-Worst Scaling
Description: Adds menu items to the R Commander for implementing case 1 (object case) best-worst scaling (BWS1) from designing choice sets to measuring preferences for items. BWS1 is a question-based survey method that constructs various combinations of items (choice sets) using the experimental designs, asks respondents to select the best and worst items in each choice set, and then measures preferences for the items by analyzing the responses. For details on BWS1, refer to Louviere et al. (2015) <doi:10.1017/CBO9781107337855>.
Author: Hideo Aizaki
Maintainer: Hideo Aizaki <azk-r@spa.nifty.com>

Diff between RcmdrPlugin.BWS1 versions 0.1-4 dated 2020-12-17 and 0.1-5 dated 2021-10-19

 DESCRIPTION                     |    8 -
 MD5                             |   10 -
 NEWS                            |    5 
 R/RcmdrPlugin.BWS1.R            |  225 +++++++++++++---------------------------
 inst/etc/menus.txt              |    3 
 man/RcmdrPlugin.BWS1-package.Rd |   40 +++----
 6 files changed, 111 insertions(+), 180 deletions(-)

More information about RcmdrPlugin.BWS1 at CRAN
Permanent link

Package logger updated to version 0.2.2 with previous version 0.2.1 dated 2021-07-06

Title: A Lightweight, Modern and Flexible Logging Utility
Description: Inspired by the the 'futile.logger' R package and 'logging' Python module, this utility provides a flexible and extensible way of formatting and delivering log messages with low overhead.
Author: Gergely Daróczi [aut, cre] (<https://orcid.org/0000-0003-3149-8537>), System1 [fnd]
Maintainer: Gergely Daróczi <daroczig@rapporter.net>

Diff between logger versions 0.2.1 dated 2021-07-06 and 0.2.2 dated 2021-10-19

 DESCRIPTION                              |    8 +--
 MD5                                      |   30 ++++++------
 NEWS.md                                  |    6 ++
 README.md                                |    2 
 build/vignette.rds                       |binary
 inst/doc/Intro.html                      |   16 +++---
 inst/doc/anatomy.html                    |   12 ++--
 inst/doc/customize_logger.Rmd            |    2 
 inst/doc/customize_logger.html           |   76 +++++++++++++++----------------
 inst/doc/migration.R                     |    2 
 inst/doc/migration.Rmd                   |    2 
 inst/doc/migration.html                  |   46 +++++++++---------
 inst/doc/r_packages.html                 |    2 
 tests/testthat/test-CRANSKIP-appenders.R |    2 
 vignettes/customize_logger.Rmd           |    2 
 vignettes/migration.Rmd                  |    2 
 16 files changed, 108 insertions(+), 102 deletions(-)

More information about logger at CRAN
Permanent link

Package tidyseurat updated to version 0.3.0 with previous version 0.2.7 dated 2021-08-25

Title: Brings Seurat to the Tidyverse
Description: It creates an invisible layer that allow to see the 'Seurat' object as tibble and interact seamlessly with the tidyverse.
Author: Stefano Mangiola [aut, cre], Maria Doyle [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>

Diff between tidyseurat versions 0.2.7 dated 2021-08-25 and 0.3.0 dated 2021-10-19

 DESCRIPTION                 |   10 
 MD5                         |   15 
 R/dplyr_methods.R           | 2328 ++++++++++++++++++++++----------------------
 R/zzz.R                     |    7 
 README.md                   | 1092 ++++++++++----------
 build/tidyseurat.pdf        |binary
 inst/CITATION               |only
 inst/doc/introduction.html  |   12 
 tests/testthat/test-dplyr.R |  298 ++---
 9 files changed, 1885 insertions(+), 1877 deletions(-)

More information about tidyseurat at CRAN
Permanent link

Package lm.br updated to version 2.9.4 with previous version 2.9.3 dated 2017-04-27

Title: Linear Model with Breakpoint
Description: Exact significance tests for a changepoint in linear or multiple linear regression. Confidence regions with exact coverage probabilities for the changepoint. Based on Knowles, Siegmund and Zhang (1991) <doi:10.1093/biomet/78.1.15>.
Author: Marc Adams [aut, cre], authors of R function 'lm' [ctb] (general interface), authors of 'lm.gls' [ctb] (interface and R code for covariate weights), U.S. NIST [ctb] (C++ code for TNT::Vector template)
Maintainer: Marc Adams <lm.br.pkg@gmail.com>

Diff between lm.br versions 2.9.3 dated 2017-04-27 and 2.9.4 dated 2021-10-19

 DESCRIPTION        |   16 +++---
 MD5                |   24 +++++-----
 build/vignette.rds |binary
 demo/testscript.R  |    2 
 inst/doc/lm.br.R   |  122 ++++++++++++++++++++++++++---------------------------
 inst/doc/lm.br.pdf |binary
 man/lm.br.Rd       |   22 ++++-----
 src/gam_fs.cpp     |    2 
 src/globals.h      |    8 ++-
 src/pre_calc.cpp   |   12 ++---
 src/set_Sigma.cpp  |    4 -
 src/set_sy.cpp     |    4 -
 src/set_theta0.cpp |    4 -
 13 files changed, 112 insertions(+), 108 deletions(-)

More information about lm.br at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.