Title: Grouped Date Classes
Description: Provides a coherent interface and implementation for creating
grouped date classes. This package is part of the RECON
(<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Author: Tim Taylor [aut, cre] (<https://orcid.org/0000-0002-8587-7113>)
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between grates versions 0.2.0 dated 2021-05-28 and 0.3.0 dated 2021-10-21
DESCRIPTION | 8 MD5 | 44 +-- NAMESPACE | 5 NEWS.md | 10 R/int_period.R | 6 R/month.R | 6 R/period.R | 16 - R/seq.R |only R/year.R | 1 R/yearweek.R | 2 README.md | 23 - build/vignette.rds |binary inst/doc/introduction.html | 576 ++++++++++++----------------------------- man/as_month.Rd | 17 - man/as_period.Rd | 17 - man/as_quarter.Rd | 17 - man/as_year.Rd | 17 - man/as_yearweek.Rd | 17 - tests/testthat/test-month.R | 4 tests/testthat/test-period.R | 4 tests/testthat/test-quarter.R | 4 tests/testthat/test-seq.R |only tests/testthat/test-year.R | 4 tests/testthat/test-yearweek.R | 6 24 files changed, 316 insertions(+), 488 deletions(-)
Title: Create and Manipulate BioCompute Objects
Description: Tools to create, validate, and export BioCompute Objects
described in King et al. (2019) <doi:10.17605/osf.io/h59uh>.
Users can encode information in data frames, and compose
BioCompute Objects from the domains defined by the standard.
A checksum validator and a JSON schema validator are provided.
This package also supports exporting BioCompute Objects as JSON,
PDF, HTML, or 'Word' documents, and exporting to cloud-based platforms.
Author: Jeffrey Grover [aut, cre] (<https://orcid.org/0000-0001-6246-1767>),
Soner Koc [aut] (<https://orcid.org/0000-0002-0772-6600>),
Nan Xiao [aut] (<https://orcid.org/0000-0002-0250-5673>),
Dennis Dean [aut] (<https://orcid.org/0000-0002-7621-9717>),
Seven Bridges Genomics [cph, fnd]
Maintainer: Jeffrey Grover <jeffrey.grover@sevenbridges.com>
Diff between biocompute versions 1.0.6 dated 2021-09-29 and 1.1.0 dated 2021-10-21
biocompute-1.0.6/biocompute/inst/bco/BCO_Example_CNVs.json |only biocompute-1.1.0/biocompute/DESCRIPTION | 6 biocompute-1.1.0/biocompute/MD5 | 109 ++- biocompute-1.1.0/biocompute/NAMESPACE | 29 biocompute-1.1.0/biocompute/NEWS.md | 9 biocompute-1.1.0/biocompute/R/compose-description.R | 14 biocompute-1.1.0/biocompute/R/compose-error.R | 10 biocompute-1.1.0/biocompute/R/compose-execution.R | 12 biocompute-1.1.0/biocompute/R/compose-extension-fhir.R | 8 biocompute-1.1.0/biocompute/R/compose-extension-scm.R | 8 biocompute-1.1.0/biocompute/R/compose-extension.R | 8 biocompute-1.1.0/biocompute/R/compose-io.R | 8 biocompute-1.1.0/biocompute/R/compose-parametric.R | 10 biocompute-1.1.0/biocompute/R/compose-provenance.R | 8 biocompute-1.1.0/biocompute/R/compose-top-level-fields.R | 26 biocompute-1.1.0/biocompute/R/compose-usability.R | 10 biocompute-1.1.0/biocompute/R/compose.R | 14 biocompute-1.1.0/biocompute/R/export-docs.R | 6 biocompute-1.1.0/biocompute/R/export-sevenbridges.R | 2 biocompute-1.1.0/biocompute/R/read-bco.R |only biocompute-1.1.0/biocompute/R/utils-compose.R | 2 biocompute-1.1.0/biocompute/R/validate-checksum.R | 16 biocompute-1.1.0/biocompute/R/validate-schema.R | 42 - biocompute-1.1.0/biocompute/R/version.R | 4 biocompute-1.1.0/biocompute/README.md | 4 biocompute-1.1.0/biocompute/inst/bco/HCV1a.json | 303 +++++----- biocompute-1.1.0/biocompute/inst/bco/HIVE_metagenomics.json | 27 biocompute-1.1.0/biocompute/inst/bco/README | 2 biocompute-1.1.0/biocompute/inst/bco/UVP.json | 25 biocompute-1.1.0/biocompute/inst/bco/glycosylation-sites-UniCarbKB.json | 46 - biocompute-1.1.0/biocompute/inst/doc/case-study.html | 28 biocompute-1.1.0/biocompute/inst/doc/intro.html | 61 -- biocompute-1.1.0/biocompute/inst/schemas/1.4.2 |only biocompute-1.1.0/biocompute/man/compose.Rd | 10 biocompute-1.1.0/biocompute/man/compose_description.Rd | 16 biocompute-1.1.0/biocompute/man/compose_error.Rd | 10 biocompute-1.1.0/biocompute/man/compose_execution.Rd | 12 biocompute-1.1.0/biocompute/man/compose_extension.Rd | 10 biocompute-1.1.0/biocompute/man/compose_fhir.Rd | 10 biocompute-1.1.0/biocompute/man/compose_io.Rd | 8 biocompute-1.1.0/biocompute/man/compose_parametric.Rd | 10 biocompute-1.1.0/biocompute/man/compose_provenance.Rd | 10 biocompute-1.1.0/biocompute/man/compose_scm.Rd | 10 biocompute-1.1.0/biocompute/man/compose_tlf.Rd | 18 biocompute-1.1.0/biocompute/man/compose_usability.Rd | 10 biocompute-1.1.0/biocompute/man/export_html.Rd | 2 biocompute-1.1.0/biocompute/man/export_pdf.Rd | 2 biocompute-1.1.0/biocompute/man/export_sevenbridges.Rd | 2 biocompute-1.1.0/biocompute/man/export_word.Rd | 2 biocompute-1.1.0/biocompute/man/read_bco.Rd |only biocompute-1.1.0/biocompute/man/validate_checksum.Rd | 12 biocompute-1.1.0/biocompute/man/validate_schema.Rd | 12 52 files changed, 543 insertions(+), 480 deletions(-)
Title: Command Line Optional and Positional Argument Parser
Description: A command line parser to
be used with Rscript to write "#!" shebang scripts that gracefully
accept positional and optional arguments and automatically generate usage.
Author: Trevor L Davis [aut, cre],
Allen Day [ctb] (Some documentation and examples ported from the getopt
package.),
Python Software Foundation [ctb] (Some documentation from the optparse
Python module.),
Paul Newell [ctb]
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between argparse versions 2.1.1 dated 2021-09-08 and 2.1.2 dated 2021-10-21
DESCRIPTION | 6 ++--- MD5 | 16 ++++++++------ NEWS.md | 9 +++++++- R/argparse.R | 20 +++++++++++++++-- README.md | 11 +++++---- build/vignette.rds |binary inst/doc/argparse.html | 46 ++++++++++++++++++++--------------------- man/figures |only tests/testthat/test-argparse.R | 14 +++++++++++- 9 files changed, 79 insertions(+), 43 deletions(-)
Title: Data Structures and Algorithms for Relations
Description: Data structures and algorithms for k-ary relations with
arbitrary domains, featuring relational algebra, predicate functions,
and fitters for consensus relations.
Author: David Meyer [aut],
Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Christian Buchta [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between relations versions 0.6-9 dated 2019-10-26 and 0.6-10 dated 2021-10-21
DESCRIPTION | 6 ++-- MD5 | 30 ++++++++++----------- build/partial.rdb |binary build/vignette.rds |binary data/Cetacea.rda |binary data/Felines.rda |binary data/SVM_Benchmarking_Classification.rda |binary data/SVM_Benchmarking_Classification_Consensus.rda |binary data/SVM_Benchmarking_Regression.rda |binary data/SVM_Benchmarking_Regression_Consensus.rda |binary inst/NEWS.Rd | 12 ++++++++ inst/doc/relations.R | 1 inst/doc/relations.pdf |binary man/consensus.Rd | 2 - man/dissimilarity.Rd | 2 - vignettes/relations.bib | 4 +- 16 files changed, 34 insertions(+), 23 deletions(-)
Title: Create Reports Using R and 'asciidoc'
Description: Inspired by Karl Broman`s reader on using 'knitr'
with 'asciidoc'
(<https://kbroman.org/knitr_knutshell/pages/asciidoc.html>), this is
merely a wrapper to 'knitr' and 'asciidoc'.
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between rasciidoc versions 3.1.3 dated 2021-08-22 and 3.1.4 dated 2021-10-21
DESCRIPTION | 8 - MD5 | 10 - NEWS.md | 4 inst/NEWS.rd | 6 inst/doc/An_Introduction_to_rasciidoc.html | 178 ++++++----------------------- inst/runit_tests/runit-render.R | 5 6 files changed, 60 insertions(+), 151 deletions(-)
Title: 'Apple App Store' and 'iTunes' Data Extraction
Description: Using 'Apple App Store' <https://www.apple.com/app-store/> web scraping and 'iTunes' API
<https://affiliate.itunes.apple.com/resources/documentation/itunes-store-web-service-search-api/>
to extract content information, app ratings and reviews.
Author: Ashley Baldry [aut, cre]
Maintainer: Ashley Baldry <arbaldry91@gmail.com>
Diff between appler versions 0.1.1 dated 2021-05-24 and 0.1.2 dated 2021-10-21
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/reviews.R | 6 +++++- tests/testthat/test-chart.R | 15 --------------- 5 files changed, 19 insertions(+), 25 deletions(-)
More information about CoordinateCleaner at CRAN
Permanent link
More information about scatterPlotMatrix at CRAN
Permanent link
Title: R Analyzer for Large-Scale Assessments
Description: Prepare and analyze data from large-scale assessments and surveys with
complex sampling and assessment design (see 'Rutkowski', 2010
<doi:10.3102/0013189X10363170>). Such studies are, for example,
international assessments like 'TIMSS', 'PIRLS' and 'PISA'. A graphical
interface is available for the non-technical user.The package includes
functions to covert the original data from 'SPSS' into 'R' data sets
keeping the user-defined missing values, merge data from different
respondents and/or countries, generate variable dictionaries, modify
data, produce descriptive statistics (percentages, means, percentiles,
benchmarks) and multivariate statistics (correlations, linear
regression, binary logistic regression). The number of supported
studies and analysis types will increase in future. For a general
presentation of the package, see 'Mirazchiyski', 2021a
(<doi:10.1186/s40536-021-00114-4>). For detailed technical aspects of the
package, see 'Mirazchiyski', 2021b (<doi:10.3390/psych3020018>).
Author: Plamen V. Mirazchiyski [aut, cre],
INERI [aut]
Maintainer: Plamen V. Mirazchiyski <plamen.mirazchiyski@ineri.org>
Diff between RALSA versions 1.0.1 dated 2021-05-28 and 1.0.2 dated 2021-10-21
DESCRIPTION | 19 MD5 | 38 NAMESPACE | 2 NEWS.md | 25 R/RALSA.r | 11 R/common.r | 685 +++----- R/lsa.bench.r | 365 +--- R/lsa.bin.log.reg.r | 244 -- R/lsa.convert.data.r | 658 -------- R/lsa.corr.r | 139 - R/lsa.data.diag.r | 187 -- R/lsa.lin.reg.r | 278 --- R/lsa.merge.data.r | 1237 ++++++--------- R/lsa.pcts.means.r | 104 - R/lsa.prctls.r | 113 - R/lsa.recode.vars.r | 77 R/lsa.vars.dict.r | 265 +-- inst/shiny/GUI/server.r | 2419 +++-------------------------- inst/shiny/GUI/ui.r | 3941 +++++++++++++++++++++--------------------------- man/RALSA.Rd | 6 20 files changed, 3219 insertions(+), 7594 deletions(-)
More information about opGMMassessment at CRAN
Permanent link
Title: Harvest Metadata Using OAI-PMH Version 2.0
Description: Harvest metadata using the Open Archives Initiative Protocol for Metadata
Harvesting (OAI-PMH) version 2.0 (for more information, see
<https://www.openarchives.org/OAI/openarchivesprotocol.html>).
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between OAIHarvester versions 0.3-2 dated 2021-05-03 and 0.3-3 dated 2021-10-21
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- R/pmh.R | 10 +++++----- R/providers.R | 2 +- R/transform.R | 22 +++++++++++----------- R/utils.R | 6 +++--- R/verb.R | 2 +- build/vignette.rds |binary inst/doc/oaih.R | 2 +- inst/doc/oaih.Rnw | 26 +++++++++++++------------- inst/doc/oaih.pdf |binary man/providers.Rd | 6 +++--- man/serialize.Rd | 2 +- man/size.Rd | 4 ++-- man/transform.Rd | 2 +- man/verb.Rd | 2 +- vignettes/oaih.Rnw | 26 +++++++++++++------------- vignettes/oaih.bib | 8 ++++---- 18 files changed, 81 insertions(+), 81 deletions(-)
Title: Nonparametric Regression and Bandwidth Selection for Spatial
Models
Description: Nonparametric smoothing techniques for data on a lattice and
functional time series. Smoothing is done via kernel regression or
local polynomial regression, a bandwidth selection procedure based on
an iterative plug-in algorithm is implemented. This package allows for
modeling a dependency structure of the error terms of the
nonparametric regression model. Methods used in this paper are
described in Feng/Schaefer (2021)
<https://ideas.repec.org/p/pdn/ciepap/144.html>, Schaefer/Feng (2021)
<https://ideas.repec.org/p/pdn/ciepap/143.html>.
Author: Bastian Schaefer [aut, cre],
Sebastian Letmathe [ctb],
Yuanhua Feng [ths]
Maintainer: Bastian Schaefer <bastian.schaefer@uni-paderborn.de>
Diff between DCSmooth versions 1.0.2 dated 2021-08-25 and 1.1.2 dated 2021-10-21
DCSmooth-1.0.2/DCSmooth/R/BandwidthSelection_AdditionalFunctions.R |only DCSmooth-1.0.2/DCSmooth/R/DCS_Methods.R |only DCSmooth-1.0.2/DCSmooth/R/SM_QARMAAdditionalFunctions.R |only DCSmooth-1.0.2/DCSmooth/R/SM_QARMAEstimation.R |only DCSmooth-1.0.2/DCSmooth/R/SM_SARMAEstimation.R |only DCSmooth-1.0.2/DCSmooth/man/qarma.est.Rd |only DCSmooth-1.0.2/DCSmooth/man/qarma.sim.Rd |only DCSmooth-1.0.2/DCSmooth/src/LP_ConstBndw_BMod.cpp |only DCSmooth-1.0.2/DCSmooth/src/LP_ConstWindow_BMod.cpp |only DCSmooth-1.1.2/DCSmooth/DESCRIPTION | 51 DCSmooth-1.1.2/DCSmooth/MD5 | 146 - DCSmooth-1.1.2/DCSmooth/NAMESPACE | 42 DCSmooth-1.1.2/DCSmooth/NEWS.md | 26 DCSmooth-1.1.2/DCSmooth/R/BandwidthSelection_KR.R | 156 - DCSmooth-1.1.2/DCSmooth/R/BandwidthSelection_LP.R | 170 - DCSmooth-1.1.2/DCSmooth/R/DCS_CheckExceptions.R | 234 + DCSmooth-1.1.2/DCSmooth/R/DCS_HelperFunctionsForMain.R | 10 DCSmooth-1.1.2/DCSmooth/R/DCS_MainFunctions.R | 505 +++- DCSmooth-1.1.2/DCSmooth/R/DCS_ParallelFunctions.R |only DCSmooth-1.1.2/DCSmooth/R/LM_FunctionsBndwSelection.R | 22 DCSmooth-1.1.2/DCSmooth/R/LM_SFARIMAAdditionalFunctions.R | 175 - DCSmooth-1.1.2/DCSmooth/R/LM_SFARIMAEstimation.R | 145 - DCSmooth-1.1.2/DCSmooth/R/LM_kdf.R | 6 DCSmooth-1.1.2/DCSmooth/R/Methods_DCS.R |only DCSmooth-1.1.2/DCSmooth/R/Methods_LM_SM.R |only DCSmooth-1.1.2/DCSmooth/R/RcppExports.R | 124 - DCSmooth-1.1.2/DCSmooth/R/SM_FunctionsBandwSelection.R |only DCSmooth-1.1.2/DCSmooth/R/SM_SARMA_AdditionalFunctions.R |only DCSmooth-1.1.2/DCSmooth/R/SM_SARMA_Estimation.R |only DCSmooth-1.1.2/DCSmooth/R/SM_SARMA_UserFunctions.R |only DCSmooth-1.1.2/DCSmooth/R/SM_VarEstimation.R | 80 DCSmooth-1.1.2/DCSmooth/R/SM_nonparametric.R | 4 DCSmooth-1.1.2/DCSmooth/R/data.R | 68 DCSmooth-1.1.2/DCSmooth/R/sysdata.rda |binary DCSmooth-1.1.2/DCSmooth/README.md | 27 DCSmooth-1.1.2/DCSmooth/build/partial.rdb |binary DCSmooth-1.1.2/DCSmooth/build/vignette.rds |binary DCSmooth-1.1.2/DCSmooth/data/returns.alv.rda |only DCSmooth-1.1.2/DCSmooth/data/temp.nunn.rda |only DCSmooth-1.1.2/DCSmooth/data/temp.yuma.rda |only DCSmooth-1.1.2/DCSmooth/data/volumes.alv.rda |only DCSmooth-1.1.2/DCSmooth/data/wind.nunn.rda |only DCSmooth-1.1.2/DCSmooth/data/wind.yuma.rda |only DCSmooth-1.1.2/DCSmooth/data/y.norm1.rda |binary DCSmooth-1.1.2/DCSmooth/data/y.norm2.rda |binary DCSmooth-1.1.2/DCSmooth/data/y.norm3.rda |binary DCSmooth-1.1.2/DCSmooth/inst/doc/DCSmooth.R | 130 - DCSmooth-1.1.2/DCSmooth/inst/doc/DCSmooth.Rmd | 562 +++- DCSmooth-1.1.2/DCSmooth/inst/doc/DCSmooth.html | 1239 ++++++---- DCSmooth-1.1.2/DCSmooth/man/dcs.Rd | 32 DCSmooth-1.1.2/DCSmooth/man/figures/README-example-1.png |binary DCSmooth-1.1.2/DCSmooth/man/kernel.assign.Rd |only DCSmooth-1.1.2/DCSmooth/man/kernel.list.Rd |only DCSmooth-1.1.2/DCSmooth/man/plot.dcs.Rd | 2 DCSmooth-1.1.2/DCSmooth/man/print.dcs.Rd | 2 DCSmooth-1.1.2/DCSmooth/man/print.dcs_options.Rd | 2 DCSmooth-1.1.2/DCSmooth/man/print.summary_dcs.Rd | 2 DCSmooth-1.1.2/DCSmooth/man/print.summary_sarma.Rd |only DCSmooth-1.1.2/DCSmooth/man/residuals.dcs.Rd | 2 DCSmooth-1.1.2/DCSmooth/man/returns.alv.Rd |only DCSmooth-1.1.2/DCSmooth/man/sarma.est.Rd |only DCSmooth-1.1.2/DCSmooth/man/sarma.sim.Rd |only DCSmooth-1.1.2/DCSmooth/man/set.options.Rd | 133 - DCSmooth-1.1.2/DCSmooth/man/sfarima.est.Rd | 14 DCSmooth-1.1.2/DCSmooth/man/sfarima.sim.Rd | 12 DCSmooth-1.1.2/DCSmooth/man/summary.dcs.Rd | 11 DCSmooth-1.1.2/DCSmooth/man/summary.dcs_options.Rd | 2 DCSmooth-1.1.2/DCSmooth/man/summary.sarma.Rd |only DCSmooth-1.1.2/DCSmooth/man/surface.dcs.Rd | 10 DCSmooth-1.1.2/DCSmooth/man/temp.nunn.Rd |only DCSmooth-1.1.2/DCSmooth/man/temp.yuma.Rd |only DCSmooth-1.1.2/DCSmooth/man/volumes.alv.Rd |only DCSmooth-1.1.2/DCSmooth/man/wind.nunn.Rd |only DCSmooth-1.1.2/DCSmooth/man/wind.yuma.Rd |only DCSmooth-1.1.2/DCSmooth/src/DCSmooth_kernels.h |only DCSmooth-1.1.2/DCSmooth/src/KR_ConstBndw.cpp | 11 DCSmooth-1.1.2/DCSmooth/src/KR_ConstWindow.cpp | 3 DCSmooth-1.1.2/DCSmooth/src/KernelFunctions.cpp | 351 -- DCSmooth-1.1.2/DCSmooth/src/Kernels_M.cpp |only DCSmooth-1.1.2/DCSmooth/src/Kernels_MW.cpp |only DCSmooth-1.1.2/DCSmooth/src/Kernels_T.cpp |only DCSmooth-1.1.2/DCSmooth/src/LP_ConstBndw.cpp | 120 DCSmooth-1.1.2/DCSmooth/src/LP_ConstWindow.cpp | 55 DCSmooth-1.1.2/DCSmooth/src/RcppExports.cpp | 404 ++- DCSmooth-1.1.2/DCSmooth/src/ar_coef.cpp | 90 DCSmooth-1.1.2/DCSmooth/src/sarma_rss.cpp |only DCSmooth-1.1.2/DCSmooth/src/sfarima_rss.cpp | 176 - DCSmooth-1.1.2/DCSmooth/tests/testthat/test-dcs.R | 477 +++ DCSmooth-1.1.2/DCSmooth/tests/testthat/test-dcs_exceptions.R |only DCSmooth-1.1.2/DCSmooth/tests/testthat/test-kernels.R |only DCSmooth-1.1.2/DCSmooth/tests/testthat/test-parallel.R |only DCSmooth-1.1.2/DCSmooth/tests/testthat/test-sarma_sfarima.R |only DCSmooth-1.1.2/DCSmooth/tests/testthat/test-set_options.R | 83 DCSmooth-1.1.2/DCSmooth/tests/testthat/test_var_model.R |only DCSmooth-1.1.2/DCSmooth/vignettes/DCSmooth.Rmd | 562 +++- DCSmooth-1.1.2/DCSmooth/vignettes/literature.bib | 20 96 files changed, 4183 insertions(+), 2315 deletions(-)
Title: A New Age-Period-Cohort Model for Describing and Investigating
Inter-Cohort Differences and Life Course Dynamics
Description: It implemented Age-Period-Interaction Model (APC-I Model) proposed in the paper of Liying Luo and James S. Hodges in 2019. A new age-period-cohort model for describing and investigating inter-cohort differences and life course dynamics.
Author: Jiahui Xu [aut, cre],
Liying Luo [aut]
Maintainer: Jiahui Xu <jpx5053@psu.edu>
Diff between APCI versions 1.0.2 dated 2021-10-01 and 1.0.3 dated 2021-10-21
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/apci.R | 2 +- R/temp6_model.R | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: A Modern and Easy-to-Use Crypto Library
Description: Bindings to 'libsodium': a modern, easy-to-use software library for
encryption, decryption, signatures, password hashing and more. Sodium uses
curve25519, a state-of-the-art Diffie-Hellman function by Daniel Bernstein,
which has become very popular after it was discovered that the NSA had
backdoored Dual EC DRBG.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between sodium versions 1.1 dated 2017-03-31 and 1.2.0 dated 2021-10-21
DESCRIPTION | 12 +- MD5 | 42 ++++---- NAMESPACE | 2 NEWS | 3 R/hashing.R | 16 +++ build/vignette.rds |binary cleanup | 2 configure | 42 ++++---- inst/doc/crypto101.R | 24 ++-- inst/doc/crypto101.html | 214 +++++++++++++++++++++++++++--------------- inst/doc/crypto101.rmd | 2 inst/doc/intro.R | 22 ++-- inst/doc/intro.html | 239 ++++++++++++++++++++++++++++++------------------ inst/doc/intro.rmd | 8 - man/hash.Rd | 15 ++- man/helpers.Rd | 1 man/stream.Rd | 2 man/symmetric.Rd | 2 src/hashing.c | 20 ++++ src/helpers.c | 18 ++- vignettes/crypto101.rmd | 2 vignettes/intro.rmd | 8 - 22 files changed, 439 insertions(+), 257 deletions(-)
Title: Efficient Bayesian Inference for Time-Varying Parameter Models
with Shrinkage
Description: Efficient Markov chain Monte Carlo (MCMC) algorithms for fully Bayesian estimation of time-varying parameter models with shrinkage priors. Details on the algorithms used are provided in Bitto and Frühwirth-Schnatter (2019) <doi:10.1016/j.jeconom.2018.11.006> and
Cadonna et al. (2020) <doi:10.3390/econometrics8020020>.
Author: Peter Knaus [aut, cre] (<https://orcid.org/0000-0001-6498-7084>),
Angela Bitto-Nemling [aut],
Annalisa Cadonna [aut] (<https://orcid.org/0000-0003-0360-7628>),
Sylvia Frühwirth-Schnatter [aut]
(<https://orcid.org/0000-0003-0516-5552>),
Daniel Winkler [ctb],
Kemal Dingic [ctb]
Maintainer: Peter Knaus <peter.knaus@wu.ac.at>
Diff between shrinkTVP versions 2.0.2 dated 2021-05-13 and 2.0.3 dated 2021-10-21
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 7 +++++++ R/plot_functions.R | 6 +++--- R/shrinkTVP.R | 10 +++++----- R/shrinkTVP_methods.R | 4 ++-- build/vignette.rds |binary inst/doc/shrinkTVP.pdf |binary inst/include/shrinkTVP.h | 37 +++++++++++++++++++++++++++++++++++++ src/exports.cpp | 1 + src/sample_DG_TVP.cpp | 2 +- src/sample_TG_TVP.cpp | 4 ++-- 12 files changed, 72 insertions(+), 27 deletions(-)
Title: Analysing Convergent Evolution using the Wheatsheaf Index
Description: Analysing convergent evolution using the Wheatsheaf index, described in Arbuckle et al. (2014) <doi: 10.1111/2041-210X.12195>, and some other random but perhaps useful functions.
Author: Kevin Arbuckle and Amanda Minter
Maintainer: Kevin Arbuckle <kevin.arbuckle@swansea.ac.uk>
Diff between windex versions 2.0.2 dated 2021-04-14 and 2.0.3 dated 2021-10-21
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- R/pir.R |only man/error.bars.Rd | 2 +- man/pir.Rd |only man/windex-package.Rd | 4 ++-- 6 files changed, 12 insertions(+), 10 deletions(-)
Title: Robust and Sparse Correlation Matrix
Description: Performs robust and sparse correlation matrix estimation. Robustness is achieved based on a simple robust pairwise correlation estimator, while sparsity is obtained based on thresholding. The optimal thresholding is tuned via cross-validation. See Serra, Coretto, Fratello and Tagliaferri (2018) <doi:10.1093/bioinformatics/btx642>.
Author: Luca Coraggio [cre, aut],
Pietro Coretto [aut],
Angela Serra [aut],
Roberto Tagliaferri [ctb]
Maintainer: Luca Coraggio <luca.coraggio@unina.it>
Diff between RSC versions 2.0 dated 2021-10-17 and 2.0.1 dated 2021-10-21
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 6 ++++++ R/rmad.R | 2 ++ man/rmad.Rd | 18 ++++++++++++------ src/init.c | 9 +++------ 6 files changed, 32 insertions(+), 21 deletions(-)
Title: Handling, Visualisation and Analysis of Epidemiological Contacts
Description: A collection of tools for representing epidemiological contact data, composed of case line lists and contacts between cases. Also contains procedures for data handling, interactive graphics, and statistics.
Author: Finlay Campbell [aut, cre],
Thibaut Jombart [aut],
Nistara Randhawa [aut],
Bertrand Sudre [aut],
VP Nagraj [aut],
Thomas Crellen [aut],
Zhian N. Kamvar [aut]
Maintainer: Finlay Campbell <finlaycampbell93@gmail.com>
Diff between epicontacts versions 1.1.0 dated 2017-11-21 and 1.1.2 dated 2021-10-21
DESCRIPTION | 36 - MD5 | 84 ++-- NAMESPACE | 1 NEWS.md | 21 + R/as.igraph.epicontacts.R | 7 R/get_clusters.R | 7 R/get_degree.R | 18 R/get_id.R | 80 ++-- R/handling.R | 125 +++--- R/make_epicontacts.R | 33 - R/plot.R | 3 R/print.summary_epicontacts.R | 8 R/subset_clusters_by_id.R | 32 + R/summary.epicontacts.R | 9 R/thin.R | 4 R/vis_epicontacts.R | 141 +++++-- build/vignette.rds |binary inst/CITATION |only inst/doc/epicontacts.R | 42 +- inst/doc/epicontacts.html | 556 +++++++++++++++------------- inst/doc/epicontacts_class.R | 24 - inst/doc/epicontacts_class.html | 303 +++++++++------ man/codeawesome.Rd | 4 man/get_clusters.Rd | 10 man/get_id.Rd | 9 man/graph3D.Rd | 15 man/make_epicontacts.Rd | 12 man/plot.epicontacts.Rd | 12 man/sub-.epicontacts.Rd | 11 man/subset.epicontacts.Rd | 13 man/vis_epicontacts.Rd | 39 + tests/testthat/rds/print.rds |only tests/testthat/rds/print1.rds |binary tests/testthat/rds/z.rds |binary tests/testthat/rds/zz.rds |binary tests/testthat/test_as.igraph.epicontacts.R | 17 tests/testthat/test_get_clusters.R | 51 ++ tests/testthat/test_get_pairwise.R | 4 tests/testthat/test_handling.R | 109 ++--- tests/testthat/test_plot.epicontacts.R | 52 +- tests/testthat/test_print.epicontacts.R | 22 - tests/testthat/test_subset.epicontacts.R | 41 +- tests/testthat/test_summary.epicontacts.R | 8 tests/testthat/test_thin.R | 8 44 files changed, 1217 insertions(+), 754 deletions(-)
Title: A Method to Estimate the Accuracy and Biogeographical Status of
Georeferenced Biological Data
Description: Automated assessment of accuracy and geographical status of georeferenced biological data. The methods rely on reference regions, namely checklists and range maps. Includes functions to obtain data from the Global Biodiversity Information Facility <https://www.gbif.org/> and from the Global Inventory of Floras and Traits <https://gift.uni-goettingen.de/home>. Alternatively, the user can input their own data. Furthermore, provides easy visualisation of the data and the results through the plotting functions. Especially suited for large datasets. The reference for the methodology is: Arlé et al. (under review).
Author: Eduardo Arlé [aut, cre],
Alexander Zizka [aut],
Patrick Weigelt [ctb],
Sam Levin [ctb],
Carsten Meyer [ths]
Maintainer: Eduardo Arlé <eduardo.arle@idiv.de>
Diff between bRacatus versions 1.0.4 dated 2021-05-28 and 1.0.5 dated 2021-10-21
DESCRIPTION | 8 MD5 | 16 - NAMESPACE | 2 NEWS.md | 12 + R/countryChecklists.R | 4 R/glonafRegions.R |only build/vignette.rds |binary inst/CITATION | 11 - inst/doc/Using_bRacatus.html | 405 +++++++++++-------------------------------- man/glonafRegions.Rd |only 10 files changed, 143 insertions(+), 315 deletions(-)
Title: Create Interactive Chart with the JavaScript 'ApexCharts'
Library
Description: Provides an 'htmlwidgets' interface to 'apexcharts.js'.
'Apexcharts' is a modern JavaScript charting library to build interactive charts and visualizations with simple API.
'Apexcharts' examples and documentation are available here: <https://apexcharts.com/>.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
Juned Chhipa [cph] (apexcharts.js library),
Mike Bostock [cph] (d3.format library)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between apexcharter versions 0.2.0 dated 2021-05-11 and 0.3.0 dated 2021-10-21
apexcharter-0.2.0/apexcharter/inst/doc/chart-options.R |only apexcharter-0.2.0/apexcharter/inst/doc/chart-options.Rmd |only apexcharter-0.2.0/apexcharter/inst/doc/chart-options.html |only apexcharter-0.2.0/apexcharter/inst/doc/facets.R |only apexcharter-0.2.0/apexcharter/inst/doc/facets.Rmd |only apexcharter-0.2.0/apexcharter/inst/doc/facets.html |only apexcharter-0.2.0/apexcharter/inst/doc/shiny-integration.R |only apexcharter-0.2.0/apexcharter/inst/doc/shiny-integration.Rmd |only apexcharter-0.2.0/apexcharter/inst/doc/shiny-integration.html |only apexcharter-0.2.0/apexcharter/inst/doc/spark-box.R |only apexcharter-0.2.0/apexcharter/inst/doc/spark-box.Rmd |only apexcharter-0.2.0/apexcharter/inst/doc/spark-box.html |only apexcharter-0.2.0/apexcharter/inst/doc/sync-charts.R |only apexcharter-0.2.0/apexcharter/inst/doc/sync-charts.Rmd |only apexcharter-0.2.0/apexcharter/inst/doc/sync-charts.html |only apexcharter-0.2.0/apexcharter/inst/htmlwidgets/apexcharter.css |only apexcharter-0.2.0/apexcharter/inst/htmlwidgets/apexcharter.yaml |only apexcharter-0.2.0/apexcharter/inst/htmlwidgets/assets |only apexcharter-0.2.0/apexcharter/vignettes/articles |only apexcharter-0.2.0/apexcharter/vignettes/chart-options.Rmd |only apexcharter-0.2.0/apexcharter/vignettes/facets.Rmd |only apexcharter-0.2.0/apexcharter/vignettes/figures |only apexcharter-0.2.0/apexcharter/vignettes/shiny-integration.Rmd |only apexcharter-0.2.0/apexcharter/vignettes/spark-box.Rmd |only apexcharter-0.2.0/apexcharter/vignettes/sync-charts.Rmd |only apexcharter-0.3.0/apexcharter/DESCRIPTION | 8 apexcharter-0.3.0/apexcharter/MD5 | 249 - apexcharter-0.3.0/apexcharter/NEWS.md | 9 apexcharter-0.3.0/apexcharter/R/annotations.R | 15 apexcharter-0.3.0/apexcharter/R/apex.R | 4 apexcharter-0.3.0/apexcharter/R/apexcharter.R | 4 apexcharter-0.3.0/apexcharter/R/format.R | 8 apexcharter-0.3.0/apexcharter/README.md | 41 apexcharter-0.3.0/apexcharter/build/vignette.rds |binary apexcharter-0.3.0/apexcharter/inst/apexcharts-locale |only apexcharter-0.3.0/apexcharter/inst/d3-format-locale |only apexcharter-0.3.0/apexcharter/inst/doc/apexcharter.R | 3 apexcharter-0.3.0/apexcharter/inst/doc/apexcharter.Rmd | 3 apexcharter-0.3.0/apexcharter/inst/doc/apexcharter.html | 1733 ---------- apexcharter-0.3.0/apexcharter/inst/htmlwidgets/apexcharter.js | 358 -- apexcharter-0.3.0/apexcharter/inst/htmlwidgets/apexcharter.js.LICENSE.txt |only apexcharter-0.3.0/apexcharter/man/add_event.Rd | 3 apexcharter-0.3.0/apexcharter/man/add_event_marker.Rd | 5 apexcharter-0.3.0/apexcharter/man/add_point.Rd | 14 apexcharter-0.3.0/apexcharter/man/label.Rd | 3 apexcharter-0.3.0/apexcharter/vignettes/apexcharter.Rmd | 3 apexcharter-0.3.0/apexcharter/vignettes/extra |only 47 files changed, 329 insertions(+), 2134 deletions(-)
Title: Utilities for the Simulation and Analysis of Random Fields
Description: Various utilities are provided that might be used in spatial statistics and elsewhere. It delivers a method for solving linear equations that checks the sparsity of the matrix before any algorithm is used. Furthermore, it includes the Struve functions.
Author: Martin Schlather [aut, cre], Reinhard Furrer [ctb], Martin Kroll [ctb], Brian D. Ripley [ctb]
Maintainer: Martin Schlather <schlather@math.uni-mannheim.de>
Diff between RandomFieldsUtils versions 0.5.5 dated 2021-10-05 and 0.5.6 dated 2021-10-21
DESCRIPTION | 6 +-- MD5 | 25 +++++++------- inst/include/Basic_utils.h | 52 +++++++++++++++++++++++++++-- inst/include/Basic_utils_local.h | 1 inst/include/General_utils.h | 1 inst/include/errors_messages.h | 10 ++++- inst/include/intrinsics.h | 69 +-------------------------------------- inst/include/parallel_simd.h |only src/Basic_utils.h | 52 +++++++++++++++++++++++++++-- src/General_utils.h | 1 src/errors_messages.h | 10 ++++- src/intrinsics.h | 3 + src/solve.cc | 17 +++++++-- src/win_linux_aux.cc | 11 +++--- 14 files changed, 157 insertions(+), 101 deletions(-)
More information about RandomFieldsUtils at CRAN
Permanent link
Title: Data Analysis Part of 'IOHprofiler'
Description: The data analysis module for the Iterative Optimization Heuristics
Profiler ('IOHprofiler'). This module provides statistical analysis methods for the
benchmark data generated by optimization heuristics, which can be visualized through a
web-based interface. The benchmark data is usually generated by the
experimentation module, called 'IOHexperimenter'. 'IOHanalyzer' also supports
the widely used 'COCO' (Comparing Continuous Optimisers) data format for benchmarking.
Author: Hao Wang [cre, aut],
Diederick Vermetten [aut],
Carola Doerr [aut],
Thomas Bäck [aut]
Maintainer: Hao Wang <h.wang@liacs.leidenuniv.nl>
Diff between IOHanalyzer versions 0.1.5.2 dated 2021-05-31 and 0.1.6.1 dated 2021-10-21
IOHanalyzer-0.1.5.2/IOHanalyzer/inst/shiny-server/ui/mockup_ontology.R |only IOHanalyzer-0.1.5.2/IOHanalyzer/inst/temp.rds |only IOHanalyzer-0.1.6.1/IOHanalyzer/DESCRIPTION | 15 IOHanalyzer-0.1.6.1/IOHanalyzer/LICENSE | 4 IOHanalyzer-0.1.6.1/IOHanalyzer/MD5 | 254 +- IOHanalyzer-0.1.6.1/IOHanalyzer/NAMESPACE | 10 IOHanalyzer-0.1.6.1/IOHanalyzer/R/DataSet.R | 247 +- IOHanalyzer-0.1.6.1/IOHanalyzer/R/DataSetList.R | 285 ++- IOHanalyzer-0.1.6.1/IOHanalyzer/R/IOHanalyzer-deprecated.R | 390 ++-- IOHanalyzer-0.1.6.1/IOHanalyzer/R/IOHanalyzer.R | 253 +- IOHanalyzer-0.1.6.1/IOHanalyzer/R/data.R | 32 IOHanalyzer-0.1.6.1/IOHanalyzer/R/plot.R | 743 +++---- IOHanalyzer-0.1.6.1/IOHanalyzer/R/plotDataSetList.R | 67 IOHanalyzer-0.1.6.1/IOHanalyzer/R/readFiles.R | 86 IOHanalyzer-0.1.6.1/IOHanalyzer/R/runServer.R | 38 IOHanalyzer-0.1.6.1/IOHanalyzer/R/stats.R | 47 IOHanalyzer-0.1.6.1/IOHanalyzer/README.md | 336 +-- IOHanalyzer-0.1.6.1/IOHanalyzer/data/dsl.rda |binary IOHanalyzer-0.1.6.1/IOHanalyzer/data/dsl_large.rda |binary IOHanalyzer-0.1.6.1/IOHanalyzer/inst/extdata/ONE_PLUS_LAMDA_EA/IOHprofiler_f1_i1.info | 4 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/extdata/ONE_PLUS_LAMDA_EA/data_f1/IOHprofiler_f1_DIM100_i1.dat | 944 +++++----- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/extdata/ONE_PLUS_LAMDA_EA_ws/IOHprofiler_fbla_i1.info | 6 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/extdata/ONE_PLUS_LAMDA_EA_ws/IOHprofiler_fblubb_i1.info | 6 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/extdata/ONE_PLUS_LAMDA_EA_ws/data_fbla/IOHprofiler_fbla_DIM100_i1.dat | 944 +++++----- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/extdata/ONE_PLUS_LAMDA_EA_ws/data_fblubb/IOHprofiler_fblubb_DIM100_i1.dat | 944 +++++----- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/LICENSE.txt | 58 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/global.R | 524 ++--- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/FV_PAR_SUMMARY_TABLE.Rmd | 18 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/INSTALL.Rmd | 78 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/PAR_SUMMARY_TABLE.Rmd | 18 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/RT_OVERVIEW_TABLE.Rmd | 20 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/RT_SUMMARY_TABLE.Rmd | 18 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/ECDF_AUC.Rmd | 80 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/ECDF_Aggregated.Rmd | 54 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/ECDF_Single_Function.Rmd | 80 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/ECDF_Single_Target.Rmd | 62 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/FV_ECDF_AUC.Rmd | 80 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/FV_ECDF_Single_Function.Rmd | 84 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/FV_ECDF_Single_Target.Rmd | 64 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/FV_Histogram.Rmd | 64 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/FV_PMF.Rmd | 64 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/FV_Rank.Rmd | 44 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/Multi_ERT.Rmd | 44 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/Multi_FCE.Rmd | 42 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/Param_plot.Rmd | 78 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/RT_Histogram.Rmd | 64 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/RT_PMF.Rmd | 64 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/RT_Rank.Rmd | 46 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/Single_ERT.Rmd | 80 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/Single_FCE.Rmd | 70 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/Template_test.Rmd | 930 ++++----- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/Report/bibliography.bib | 20 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/TAR_SUMMARY_TABLE.Rmd | 14 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/about.md | 194 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/dataformat.md | 210 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/docs.Rmd | 52 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/quantile.Rmd | 18 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/markdown/welcome.md | 90 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server.R | 130 - IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/ERTPlot.R | 38 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/ERT_aggr_dim_plot.R | 266 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/ERT_aggr_plot.R | 10 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/ERT_summary.R | 271 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/FCEPDF.R | 11 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/FCEPlot.R | 29 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/FCESummary.R | 273 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/FCE_ECDF.R | 242 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/FCE_aggr_plot.R | 12 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/FV_DSCinterface.R | 448 ++-- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/FV_PAR.R | 21 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/RTPMF.R | 11 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/RT_DSCinterface.R | 446 ++-- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/RT_ECDF.R | 12 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/RT_Par.R | 359 +-- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/Shapley_computations.R | 244 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/fv_stat_tests.R | 320 +-- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/general_overview.R | 122 - IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/parrallel_coord.R | 10 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/report_generation.R | 78 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/settings_page.R | 35 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/statistical_significance.R | 318 +-- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/tables_multi_func.R | 204 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/server/upload.R | 243 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/theme.R | 200 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui.R | 50 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/DIM_fID_panel.R | 32 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/DSC_interface.R | 560 ++--- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/ERT_agg_box.R | 7 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/ERT_box.R | 28 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/ERT_comparison_box.R | 12 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/Parrallel_coord_box.R | 66 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/fv_box.R | 15 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/fv_dist_box.R | 17 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/fv_ecdf_box.R | 272 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/fv_par_box.R | 268 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/fv_stats_box.R | 234 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/fv_summary_box.R | 178 - IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/overview_box.R | 72 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/report_generation_box.R | 236 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/rt_dist_box.R | 12 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/rt_ecdf_box.R | 25 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/rt_par_box.R | 268 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/rt_portfolio_box.R | 3 IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/rt_summary_box.R | 186 - IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/settings.R | 177 - IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/sidebar_menu.R | 98 - IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/stats_box.R | 250 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/tables_multi_func_box.R | 206 +- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/upload_box.R | 298 +-- IOHanalyzer-0.1.6.1/IOHanalyzer/inst/shiny-server/ui/variable.R | 73 IOHanalyzer-0.1.6.1/IOHanalyzer/man/DataSetList.Rd | 7 IOHanalyzer-0.1.6.1/IOHanalyzer/man/change_id.Rd |only IOHanalyzer-0.1.6.1/IOHanalyzer/man/clean_DataSetList.Rd | 2 IOHanalyzer-0.1.6.1/IOHanalyzer/man/get_RT_summary.Rd | 5 IOHanalyzer-0.1.6.1/IOHanalyzer/man/get_color_scheme.Rd | 4 IOHanalyzer-0.1.6.1/IOHanalyzer/man/get_color_scheme_dt.Rd | 2 IOHanalyzer-0.1.6.1/IOHanalyzer/man/get_funcName.Rd |only IOHanalyzer-0.1.6.1/IOHanalyzer/man/get_id.Rd |only IOHanalyzer-0.1.6.1/IOHanalyzer/man/get_line_style.Rd | 4 IOHanalyzer-0.1.6.1/IOHanalyzer/man/get_marg_contrib_ecdf.Rd | 6 IOHanalyzer-0.1.6.1/IOHanalyzer/man/get_static_attribute_values.Rd |only IOHanalyzer-0.1.6.1/IOHanalyzer/man/get_static_attributes.Rd |only IOHanalyzer-0.1.6.1/IOHanalyzer/man/plot_general_data.Rd | 8 IOHanalyzer-0.1.6.1/IOHanalyzer/man/runServer.Rd | 5 IOHanalyzer-0.1.6.1/IOHanalyzer/man/set_color_scheme.Rd | 4 IOHanalyzer-0.1.6.1/IOHanalyzer/man/subset.DataSet.Rd |only IOHanalyzer-0.1.6.1/IOHanalyzer/man/subset.DataSetList.Rd | 13 IOHanalyzer-0.1.6.1/IOHanalyzer/tests/testthat.R | 8 IOHanalyzer-0.1.6.1/IOHanalyzer/tests/testthat/test_DataSetList.R | 94 IOHanalyzer-0.1.6.1/IOHanalyzer/tests/testthat/test_DataSetList_named_with_strings.R | 124 - IOHanalyzer-0.1.6.1/IOHanalyzer/tests/testthat/test_data_generation.R | 232 +- IOHanalyzer-0.1.6.1/IOHanalyzer/tests/testthat/test_diagram_examples_with_string_names.R | 72 132 files changed, 9082 insertions(+), 8585 deletions(-)
Title: Monotonic Binning for Credit Rating Models
Description: Performs monotonic binning of numeric risk factor in credit rating models (PD, LGD, EAD)
development. All functions handle both binary and continuous target variable.
Functions that use isotonic regression in the first stage of binning process have an additional
feature for correction of minimum percentage of observations and minimum target rate per bin.
Additionally, monotonic trend can be identified based on raw data or, if known in advance,
forced by functions' argument. Missing values and other possible special values are treated
separately from so-called complete cases.
Author: Andrija Djurovic [aut, cre]
Maintainer: Andrija Djurovic <djandrija@gmail.com>
Diff between monobin versions 0.1.1 dated 2021-08-02 and 0.2.0 dated 2021-10-21
DESCRIPTION | 6 +++--- MD5 | 25 ++++++++++++++----------- NAMESPACE | 1 + NEWS.md | 9 +++++++-- R/00_GLOBALS.R | 2 +- R/01_PCT_BINNING.R | 1 - R/02_ISO_BINNING.R | 1 - R/03_WOE_BINNING.R | 1 - R/04_CUM_BINNING.R | 1 - R/05_STS_BINNING.R | 1 - R/06_NDR_BINNING.R | 1 - R/07_MDT_BINNING.R |only R/99_CHECKS.R | 6 +++--- README.md |only man/mdt.bin.Rd |only 15 files changed, 29 insertions(+), 26 deletions(-)
Title: Interface with 'Nominatim' API Service
Description: Lite interface for getting data from 'OSM' service
'Nominatim' <https://nominatim.org/release-docs/latest/>. Extract
coordinates from addresses, find places near a set of coordinates,
search for amenities and return spatial objects on 'sf' format.
Author: Diego Hernangómez [aut, cre, cph]
(<https://orcid.org/0000-0001-8457-4658>),
Jindra Lacko [ctb, rev]
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>
Diff between nominatimlite versions 0.1.2 dated 2021-10-07 and 0.1.3 dated 2021-10-21
nominatimlite-0.1.2/nominatimlite/inst/doc/nominatimlite.R |only nominatimlite-0.1.3/nominatimlite/DESCRIPTION | 15 - nominatimlite-0.1.3/nominatimlite/MD5 | 84 ++++---- nominatimlite-0.1.3/nominatimlite/NEWS.md | 60 +++--- nominatimlite-0.1.3/nominatimlite/R/geo_address_lookup.R | 20 -- nominatimlite-0.1.3/nominatimlite/R/geo_address_lookup_sf.R | 20 -- nominatimlite-0.1.3/nominatimlite/R/geo_amenity.R | 23 -- nominatimlite-0.1.3/nominatimlite/R/geo_amenity_sf.R | 22 -- nominatimlite-0.1.3/nominatimlite/R/geo_lite.R | 22 -- nominatimlite-0.1.3/nominatimlite/R/geo_lite_sf.R | 39 +--- nominatimlite-0.1.3/nominatimlite/R/nominatim_check_access.R | 94 ++++++++-- nominatimlite-0.1.3/nominatimlite/R/reverse_geo_lite.R | 23 -- nominatimlite-0.1.3/nominatimlite/R/reverse_geo_lite_sf.R | 24 -- nominatimlite-0.1.3/nominatimlite/README.md | 70 +++---- nominatimlite-0.1.3/nominatimlite/build/vignette.rds |binary nominatimlite-0.1.3/nominatimlite/data/osm_amenities.rda |binary nominatimlite-0.1.3/nominatimlite/inst/WORDLIST | 5 nominatimlite-0.1.3/nominatimlite/inst/doc/nominatimlite.Rmd | 25 +- nominatimlite-0.1.3/nominatimlite/inst/doc/nominatimlite.html | 4 nominatimlite-0.1.3/nominatimlite/man/api_call.Rd |only nominatimlite-0.1.3/nominatimlite/man/figures/README-McDonalds-1.png |binary nominatimlite-0.1.3/nominatimlite/man/figures/README-line-object-1.png |binary nominatimlite-0.1.3/nominatimlite/man/figures/README-penta-1.png |binary nominatimlite-0.1.3/nominatimlite/man/geo_address_lookup.Rd | 7 nominatimlite-0.1.3/nominatimlite/man/geo_address_lookup_sf.Rd | 11 - nominatimlite-0.1.3/nominatimlite/man/geo_amenity.Rd | 7 nominatimlite-0.1.3/nominatimlite/man/geo_amenity_sf.Rd | 11 - nominatimlite-0.1.3/nominatimlite/man/geo_lite.Rd | 7 nominatimlite-0.1.3/nominatimlite/man/geo_lite_sf.Rd | 24 +- nominatimlite-0.1.3/nominatimlite/man/nominatim_check_access.Rd | 11 - nominatimlite-0.1.3/nominatimlite/man/nominatimlite-package.Rd | 1 nominatimlite-0.1.3/nominatimlite/man/reverse_geo_lite.Rd | 7 nominatimlite-0.1.3/nominatimlite/man/reverse_geo_lite_sf.Rd | 11 - nominatimlite-0.1.3/nominatimlite/tests/testthat/test-geo_address_lookup.R | 10 - nominatimlite-0.1.3/nominatimlite/tests/testthat/test-geo_address_lookup_sf.R | 8 nominatimlite-0.1.3/nominatimlite/tests/testthat/test-geo_amenity.R | 5 nominatimlite-0.1.3/nominatimlite/tests/testthat/test-geo_amenity_sf.R | 5 nominatimlite-0.1.3/nominatimlite/tests/testthat/test-geo_lite.R | 9 nominatimlite-0.1.3/nominatimlite/tests/testthat/test-geo_lite_sf.R | 9 nominatimlite-0.1.3/nominatimlite/tests/testthat/test-reverse_geo_lite.R | 7 nominatimlite-0.1.3/nominatimlite/tests/testthat/test-reverse_geo_lite_sf.R | 8 nominatimlite-0.1.3/nominatimlite/vignettes/McDonalds-1.png |binary nominatimlite-0.1.3/nominatimlite/vignettes/nominatimlite.Rmd | 25 +- nominatimlite-0.1.3/nominatimlite/vignettes/penta-1.png |binary 44 files changed, 403 insertions(+), 330 deletions(-)
Title: Operationalizing Social Determinants of Health Data for
Researchers
Description: Accesses raw data via API and calculates social
determinants of health measures for user-specified locations in the
US, returning them in tidyverse- and sf-compatible data frames.
Author: Nik Krieger [aut, cre],
Jarrod Dalton [aut],
Cindy Wang [aut],
Adam Perzynski [aut],
National Institutes of Health/National Institute on Aging [fnd] (The
development of this software package was supported by a research
grant from the National Institutes of Health/National Institute on
Aging, (Principal Investigators: Jarrod E. Dalton, PhD and Adam T.
Perzynski, PhD; Grant Number: 5R01AG055480-02). All of its contents
are solely the responsibility of the authors and do not necessarily
represent the official views of the NIH.)
Maintainer: Nik Krieger <nk@case.edu>
Diff between sociome versions 2.0.0 dated 2021-02-24 and 2.1.0 dated 2021-10-21
sociome-2.0.0/sociome/R/sysdata.rda |only sociome-2.0.0/sociome/inst |only sociome-2.1.0/sociome/DESCRIPTION | 18 sociome-2.1.0/sociome/MD5 | 44 - sociome-2.1.0/sociome/NAMESPACE | 5 sociome-2.1.0/sociome/NEWS.md | 7 sociome-2.1.0/sociome/R/calculate_adi.R | 231 +++--- sociome-2.1.0/sociome/R/census_api_key.R | 2 sociome-2.1.0/sociome/R/centers.R |only sociome-2.1.0/sociome/R/data_documentation.R | 4 sociome-2.1.0/sociome/R/dissimilarity.R |only sociome-2.1.0/sociome/R/get_adi.R | 233 +++--- sociome-2.1.0/sociome/R/get_geoids.R | 34 sociome-2.1.0/sociome/R/utils-pipe.R | 1 sociome-2.1.0/sociome/R/validation.R | 354 +++++++--- sociome-2.1.0/sociome/data/acs_vars.rda |binary sociome-2.1.0/sociome/data/decennial_vars.rda |binary sociome-2.1.0/sociome/man/acs_vars.Rd | 2 sociome-2.1.0/sociome/man/append_dissimilarities.Rd |only sociome-2.1.0/sociome/man/calculate_adi.Rd | 73 -- sociome-2.1.0/sociome/man/census_api_key.Rd | 2 sociome-2.1.0/sociome/man/get_adi.Rd | 269 +++---- sociome-2.1.0/sociome/man/get_areas_near_coordinates.Rd |only sociome-2.1.0/sociome/man/get_geoids.Rd | 32 sociome-2.1.0/sociome/man/lon_lat_from_area.Rd |only sociome-2.1.0/sociome/tests/testthat/nmcounties.rda |only sociome-2.1.0/sociome/tests/testthat/test_tidycensus_related.R | 81 ++ 27 files changed, 819 insertions(+), 573 deletions(-)
Title: Reddit Data Extraction Toolkit
Description: A collection of tools for extracting structured data from <https://www.reddit.com/>.
Author: Ivan Rivera <ivan.s.rivera@gmail.com>
Maintainer: Ivan Rivera <ivan.s.rivera@gmail.com>
Diff between RedditExtractoR versions 3.0.3 dated 2021-09-03 and 3.0.5 dated 2021-10-21
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 8 ++++++++ R/find_thread_urls.R | 1 + R/parsers.R | 4 +--- README.md | 5 +++++ 6 files changed, 24 insertions(+), 12 deletions(-)
More information about RedditExtractoR at CRAN
Permanent link
Title: Proportional Odds Model with Censored, Time-Lagged Categorical
Outcome
Description: Implements a semiparametric estimator for the odds ratio model with
censored, time-lagged, ordered categorical outcome in a randomized clinical
trial that incorporates baseline and time-dependent information.
Tsiatis, A. A. and Davidian, M. (2021) <arXiv:2106.15559>.
Author: Marie Davidian [aut],
A. A. Tsiatis [aut],
Shannon T. Holloway [aut, cre]
Maintainer: Shannon T. Holloway <sthollow@ncsu.edu>
Diff between tLagPropOdds versions 1.1 dated 2021-10-20 and 1.2 dated 2021-10-21
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 8 +++++++- R/aipw.R | 18 +++++++----------- 4 files changed, 20 insertions(+), 18 deletions(-)
Title: The Flexible Spatial Scan Statistic
Description: Functions for the detection of spatial clusters using the flexible
spatial scan statistic developed by Tango and Takahashi (2005) <doi:10.1186/1476-072X-4-11>.
This package implements a wrapper for the C routine used in the FleXScan 3.1.2
<https://sites.google.com/site/flexscansoftware/home> developed by Takahashi,
Yokoyama, and Tango. For details, see Otani et al. (2021) <doi:10.18637/jss.v099.i13>.
Author: Takahiro Otani,
Kunihiko Takahashi
Maintainer: Takahiro Otani <otani@med.nagoya-cu.ac.jp>
Diff between rflexscan versions 0.4.0 dated 2021-01-19 and 1.0.0 dated 2021-10-21
DESCRIPTION | 12 ++++++------ MD5 | 17 +++++++++-------- NAMESPACE | 1 - NEWS.md | 6 +++++- R/RcppExports.R | 44 ++++++++++++++++++++++---------------------- R/flexscan.R | 9 ++++++++- inst |only man/rflexscan-package.Rd | 3 +++ man/rflexscan.Rd | 6 +++++- src/RcppExports.cpp | 5 +++++ 10 files changed, 63 insertions(+), 40 deletions(-)
Title: Access, Retrieve, and Work with Canadian Census Data and
Geography
Description: Integrated, convenient, and uniform access to Canadian
Census data and geography retrieved using the 'CensusMapper' API. This package produces analysis-ready
tidy data frames and spatial data in multiple formats, as well as convenience functions
for working with Census variables, variable hierarchies, and region selection. API
keys are freely available with free registration at <https://censusmapper.ca/api>.
Census data and boundary geometries are reproduced and distributed on an "as
is" basis with the permission of Statistics Canada (Statistics Canada 2001; 2006;
2011; 2016).
Author: Jens von Bergmann [aut] (API creator and maintainer),
Dmitry Shkolnik [aut, cre] (Package maintainer, responsible for
correspondence),
Aaron Jacobs [aut]
Maintainer: Dmitry Shkolnik <shkolnikd@gmail.com>
Diff between cancensus versions 0.4.5 dated 2021-10-20 and 0.4.6 dated 2021-10-21
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/Making_maps_with_cancensus.html | 8 ++++---- man/child_census_vectors.Rd | 3 ++- 4 files changed, 12 insertions(+), 11 deletions(-)
Title: User-Friendly Tables with Color Helpers for Data Exploration
Description: Make it easy to deal with multiple cross-tables in data
exploration, by creating them, manipulating them, and adding color
helpers to highlight important informations. All functions are "tidy",
pipe-friendly, and render data frames which can be easily manipulated.
Tables can be exported to Excel and in html with formats and colors.
Author: Brice Nocenti [aut, cre]
Maintainer: Brice Nocenti <brice.nocenti@gmail.com>
Diff between tabxplor versions 1.0.1 dated 2021-09-14 and 1.0.2 dated 2021-10-21
tabxplor-1.0.1/tabxplor/man/tab_core.Rd |only tabxplor-1.0.2/tabxplor/DESCRIPTION | 10 tabxplor-1.0.2/tabxplor/MD5 | 62 tabxplor-1.0.2/tabxplor/NAMESPACE | 1 tabxplor-1.0.2/tabxplor/NEWS.md | 19 tabxplor-1.0.2/tabxplor/R/fmt_class.R | 230 +- tabxplor-1.0.2/tabxplor/R/tab.R | 167 + tabxplor-1.0.2/tabxplor/R/tab_classes.R | 355 ++- tabxplor-1.0.2/tabxplor/R/tab_xl.R | 345 +-- tabxplor-1.0.2/tabxplor/R/utils.R | 4 tabxplor-1.0.2/tabxplor/README.md | 25 tabxplor-1.0.2/tabxplor/build/vignette.rds |binary tabxplor-1.0.2/tabxplor/inst/doc/tabxplor.R | 9 tabxplor-1.0.2/tabxplor/inst/doc/tabxplor.Rmd | 28 tabxplor-1.0.2/tabxplor/inst/doc/tabxplor.html | 2094 +++++++++++++++++-- tabxplor-1.0.2/tabxplor/man/fmt.Rd | 2 tabxplor-1.0.2/tabxplor/man/format.tabxplor_fmt.Rd | 8 tabxplor-1.0.2/tabxplor/man/new_tab.Rd | 2 tabxplor-1.0.2/tabxplor/man/tab.Rd | 6 tabxplor-1.0.2/tabxplor/man/tab_chi2.Rd | 4 tabxplor-1.0.2/tabxplor/man/tab_ci.Rd | 4 tabxplor-1.0.2/tabxplor/man/tab_kable.Rd | 31 tabxplor-1.0.2/tabxplor/man/tab_many.Rd | 29 tabxplor-1.0.2/tabxplor/man/tab_pct.Rd | 6 tabxplor-1.0.2/tabxplor/man/tab_plain.Rd |only tabxplor-1.0.2/tabxplor/man/tab_prepare.Rd | 6 tabxplor-1.0.2/tabxplor/man/tab_spread.Rd | 5 tabxplor-1.0.2/tabxplor/man/tab_tot.Rd | 4 tabxplor-1.0.2/tabxplor/man/tab_totaltab.Rd | 4 tabxplor-1.0.2/tabxplor/man/tab_xl.Rd | 18 tabxplor-1.0.2/tabxplor/tests/testthat/test-tab.R | 792 +++---- tabxplor-1.0.2/tabxplor/tests/testthat/test-tab_xl.R | 15 tabxplor-1.0.2/tabxplor/vignettes/tabxplor.Rmd | 28 33 files changed, 3268 insertions(+), 1045 deletions(-)
Title: Text Processing for Small or Big Data Files
Description: It offers functions for splitting, parsing, tokenizing and creating a vocabulary for big text data files. Moreover, it includes functions for building a document-term matrix and extracting information from those (term-associations, most frequent terms). It also embodies functions for calculating token statistics (collocations, look-up tables, string dissimilarities) and functions to work with sparse matrices. Lastly, it includes functions for Word Vector Representations (i.e. 'GloVe', 'fasttext') and incorporates functions for the calculation of (pairwise) text document dissimilarities. The source code is based on 'C++11' and exported in R through the 'Rcpp', 'RcppArmadillo' and 'BH' packages.
Author: Lampros Mouselimis [aut, cre] (<https://orcid.org/0000-0002-8024-1546>)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between textTinyR versions 1.1.5 dated 2021-10-13 and 1.1.6 dated 2021-10-21
DESCRIPTION | 10 MD5 | 16 NEWS.md | 5 README.md | 2 build/vignette.rds |binary inst/doc/functionality_of_textTinyR_package.html | 4 inst/doc/word_vectors_doc2vec.html | 4 tests/testthat/helper-function_for_tests.R | 89 + tests/testthat/test-tokenization_transformation.R | 1105 +++++++++++----------- 9 files changed, 636 insertions(+), 599 deletions(-)
Title: Access the 'City of Vancouver' Open Data API
Description: Wrapper around the 'City of Vancouver' Open Data API <https://opendata.vancouver.ca/api/v2/console> to simplify and standardize access to 'City of Vancouver' open data.
Functionality to list the data catalogue and access data and geographic records.
Author: Jens von Bergmann
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between VancouvR versions 0.1.6 dated 2021-07-09 and 0.1.7 dated 2021-10-21
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 5 +++++ README.md | 2 +- inst/doc/Demo.html | 38 +++++++++++++++++++------------------- inst/doc/Isolines.html | 4 +++- man/aggregate_cov_data.Rd | 2 ++ man/get_cov_data.Rd | 2 ++ man/get_cov_metadata.Rd | 2 ++ man/list_cov_datasets.Rd | 2 ++ man/search_cov_datasets.Rd | 2 ++ 11 files changed, 52 insertions(+), 35 deletions(-)
Title: High Dimensional Bayesian Ridge Regression without MCMC
Description: The svd(singular value decomposition) or qr decomposition was using for the implementation, this avoid the recursion optimizing the time in the compute.
Author: Sergio Perez-Elizalde Developer [aut],
Blanca Monroy-Castillo Developer [aut, cre],
Paulino Perez-Rodriguez User [ctb],
Jose Crossa User [ctb]
Maintainer: Blanca Monroy-Castillo Developer <blancamonroy.96@gmail.com>
Diff between HDBRR versions 1.1.1 dated 2021-09-22 and 1.1.2 dated 2021-10-21
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/HDBRR.R | 2 +- R/plot.HDBRR.R | 4 ++-- R/summary.HDBRR.R | 4 ++-- build/vignette.rds |binary inst/doc/HDBRR.Rnw | 12 ++++++------ inst/doc/HDBRR.pdf |binary vignettes/HDBRR.Rnw | 12 ++++++------ 9 files changed, 28 insertions(+), 28 deletions(-)
Title: Analyze, Summarize, and Visualize Daily Streamflow Data
Description: The Flow Analysis Summary Statistics Tool for R, 'fasstr', provides various
functions to tidy and screen daily stream discharge data, calculate and visualize various summary statistics
and metrics, and compute annual trending and volume frequency analyses. It features useful function arguments
for filtering of and handling dates, customizing data and metrics, and the ability to pull daily data directly
from the Water Survey of Canada hydrometric database (<https://collaboration.cmc.ec.gc.ca/cmc/hydrometrics/www/>).
Author: Jon Goetz [aut, cre] (<https://orcid.org/0000-0002-4993-1119>),
Carl James Schwarz [aut],
Robin Pike [ctb],
Province of British Columbia [cph]
Maintainer: Jon Goetz <jon.goetz@gov.bc.ca>
Diff between fasstr versions 0.3.2 dated 2020-11-07 and 0.3.3 dated 2021-10-21
DESCRIPTION | 27 MD5 | 287 ++--- NEWS.md | 16 R/add_date_variables.R | 6 R/calc_daily_cumulative_stats.R | 3 R/calc_daily_stats.R | 21 R/calc_longterm_daily_stats.R | 14 R/calc_longterm_monthly_stats.R | 9 R/calc_monthly_stats.R | 11 R/compute_annual_trends.R | 21 R/compute_full_analysis.R | 6 R/compute_hydat_peak_frequencies.R | 2 R/fill_missing_dates.R | 127 -- R/plot_annual_cumulative_stats.R | 14 R/plot_annual_flow_timing.R | 2 R/plot_annual_lowflows.R | 4 R/plot_annual_outside_normal.R | 2 R/plot_annual_stats.R | 23 R/plot_daily_cumulative_stats.R | 3 R/plot_daily_stats.R | 6 R/plot_monthly_stats.R | 2 R/utils.R | 6 R/write_full_analysis.R | 2 build/vignette.rds |binary inst/doc/fasstr.html | 324 ------ inst/doc/fasstr_frequency_analysis.html | 316 ------ inst/doc/fasstr_full_analysis.R | 9 inst/doc/fasstr_full_analysis.Rmd | 9 inst/doc/fasstr_full_analysis.html | 348 +----- inst/doc/fasstr_trending_analysis.R | 10 inst/doc/fasstr_trending_analysis.Rmd | 12 inst/doc/fasstr_trending_analysis.html | 349 +----- inst/doc/fasstr_under_the_hood.Rmd | 3 inst/doc/fasstr_under_the_hood.html | 553 +++------- inst/doc/fasstr_users_guide.R | 2 inst/doc/fasstr_users_guide.Rmd | 8 inst/doc/fasstr_users_guide.html | 986 +++++++------------ man/add_basin_area.Rd | 116 +- man/add_cumulative_volume.Rd | 112 +- man/add_cumulative_yield.Rd | 144 +- man/add_daily_volume.Rd | 72 - man/add_daily_yield.Rd | 120 +- man/add_date_variables.Rd | 96 - man/add_rolling_means.Rd | 142 +- man/add_seasons.Rd | 112 +- man/calc_all_annual_stats.Rd | 304 ++--- man/calc_annual_cumulative_stats.Rd | 216 ++-- man/calc_annual_flow_timing.Rd | 186 +-- man/calc_annual_lowflows.Rd | 214 ++-- man/calc_annual_outside_normal.Rd | 190 +-- man/calc_annual_peaks.Rd | 208 ++-- man/calc_annual_stats.Rd | 242 ++-- man/calc_daily_cumulative_stats.Rd | 211 ++-- man/calc_daily_stats.Rd | 255 ++-- man/calc_flow_percentile.Rd | 186 +-- man/calc_longterm_daily_stats.Rd | 286 ++--- man/calc_longterm_mean.Rd | 182 +-- man/calc_longterm_monthly_stats.Rd | 285 ++--- man/calc_longterm_percentile.Rd | 180 +-- man/calc_monthly_cumulative_stats.Rd | 208 ++-- man/calc_monthly_stats.Rd | 251 ++-- man/compute_annual_frequencies.Rd | 280 ++--- man/compute_annual_trends.Rd | 345 +++--- man/compute_frequency_analysis.Rd | 186 +-- man/compute_frequency_quantile.Rd | 198 +-- man/compute_full_analysis.Rd | 290 ++--- man/compute_hydat_peak_frequencies.Rd | 184 +-- man/fasstr-package.Rd | 114 +- man/figures/fasstr_cheatsheet.png |only man/figures/plot1-1.png |binary man/figures/plot2-1.png |binary man/fill_missing_dates.Rd | 123 +- man/plot_annual_cumulative_stats.Rd | 214 +--- man/plot_annual_flow_timing.Rd | 178 +-- man/plot_annual_lowflows.Rd | 192 +-- man/plot_annual_means.Rd | 180 +-- man/plot_annual_outside_normal.Rd | 192 +-- man/plot_annual_stats.Rd | 253 ++-- man/plot_daily_cumulative_stats.Rd | 217 ++-- man/plot_daily_stats.Rd | 274 ++--- man/plot_data_screening.Rd | 192 +-- man/plot_flow_data.Rd | 216 ++-- man/plot_flow_duration.Rd | 242 ++-- man/plot_longterm_daily_stats.Rd | 240 ++-- man/plot_longterm_monthly_stats.Rd | 248 ++-- man/plot_missing_dates.Rd | 182 +-- man/plot_monthly_cumulative_stats.Rd | 220 ++-- man/plot_monthly_stats.Rd | 214 ++-- man/screen_flow_data.Rd | 222 ++-- man/write_flow_data.Rd | 172 +-- man/write_full_analysis.Rd | 304 ++--- man/write_objects_list.Rd | 112 +- man/write_plots.Rd | 124 +- man/write_results.Rd | 72 - tests/testthat/test-add_basin_area.R | 16 tests/testthat/test-add_cumulative_volume.R | 16 tests/testthat/test-add_cumulative_yield.R | 18 tests/testthat/test-add_daily_volume.R | 8 tests/testthat/test-add_daily_yield.R | 12 tests/testthat/test-add_date_variables.R | 28 tests/testthat/test-add_rolling_means.R | 16 tests/testthat/test-add_seasons.R | 12 tests/testthat/test-calc_all_annual_stats.R | 12 tests/testthat/test-calc_annual_cumulative_stats.R | 12 tests/testthat/test-calc_annual_flow_timing.R | 10 tests/testthat/test-calc_annual_lowflows.R | 12 tests/testthat/test-calc_annual_outside_normal.R | 8 tests/testthat/test-calc_annual_stats.R | 20 tests/testthat/test-calc_daily_cumulative_stats.R | 12 tests/testthat/test-calc_daily_stats.R | 20 tests/testthat/test-calc_flow_percentile.R | 6 tests/testthat/test-calc_longterm_daily_stats.R | 20 tests/testthat/test-calc_longterm_mean.R | 10 tests/testthat/test-calc_longterm_monthly_stats.R | 20 tests/testthat/test-calc_longterm_percentile.R | 8 tests/testthat/test-calc_monthly_cumulative_stats.R | 12 tests/testthat/test-calc_monthly_stats.R | 22 tests/testthat/test-compute_annual_frequencies.R | 4 tests/testthat/test-compute_annual_trends.R | 18 tests/testthat/test-compute_frequency_analysis.R | 4 tests/testthat/test-compute_frequency_quantile.R | 4 tests/testthat/test-compute_full_analysis.R | 4 tests/testthat/test-compute_hydat_peak_frequencies.R | 6 tests/testthat/test-fill_missing_dates.R | 20 tests/testthat/test-plot_annual_cumulative_stats.R | 8 tests/testthat/test-plot_annual_flow_timing.R | 4 tests/testthat/test-plot_annual_lowflows.R | 6 tests/testthat/test-plot_annual_means.R | 4 tests/testthat/test-plot_annual_outside_normal.R | 6 tests/testthat/test-plot_annual_stats.R | 4 tests/testthat/test-plot_daily_cumulative_stats.R | 4 tests/testthat/test-plot_daily_stats.R | 6 tests/testthat/test-plot_data_screening.R | 6 tests/testthat/test-plot_flow_data.R | 6 tests/testthat/test-plot_flow_duration.R | 6 tests/testthat/test-plot_longterm_daily_stats.R | 4 tests/testthat/test-plot_longterm_monthly_stats.R | 4 tests/testthat/test-plot_missing_dates.R | 4 tests/testthat/test-plot_monthly_cumulative_stats.R | 4 tests/testthat/test-plot_monthly_stats.R | 8 tests/testthat/test-screen_flow_data.R | 14 vignettes/fasstr_full_analysis.Rmd | 9 vignettes/fasstr_trending_analysis.Rmd | 12 vignettes/fasstr_under_the_hood.Rmd | 3 vignettes/fasstr_users_guide.Rmd | 8 145 files changed, 6572 insertions(+), 8189 deletions(-)