Title: Revealed Preference and Attention Analysis in Random Limited
Attention Models
Description: It is widely documented in psychology, economics and other disciplines that socio-economic agent may not pay full attention to all available alternatives, rendering standard revealed preference theory invalid. This package implements the estimation and inference procedures of Cattaneo, Ma, Masatlioglu and Suleymanov (2020) <arXiv:1712.03448> and Cattaneo, Cheung, Ma, and Masatlioglu (2021) <arXiv:2110.10650>, which utilizes standard choice data to partially identify and estimate a decision maker's preference and attention. For inference, several simulation-based critical values are provided.
Author: Matias D. Cattaneo, Paul Cheung, Xinwei Ma, Yusufcan Masatlioglu, Elchin Suleymanov
Maintainer: Xinwei Ma <x1ma@ucsd.edu>
Diff between ramchoice versions 1.1 dated 2019-07-11 and 2.0 dated 2021-10-22
ramchoice-1.1/ramchoice/R/rAtte.R |only ramchoice-1.1/ramchoice/R/rAtte_fun.R |only ramchoice-1.1/ramchoice/man/print.CMMRandomAttention.Rd |only ramchoice-1.1/ramchoice/man/summary.CMMRandomAttention.Rd |only ramchoice-2.0/ramchoice/DESCRIPTION | 15 +- ramchoice-2.0/ramchoice/MD5 | 34 +++-- ramchoice-2.0/ramchoice/NAMESPACE | 12 +- ramchoice-2.0/ramchoice/R/auxiliaryFunctions.R |only ramchoice-2.0/ramchoice/R/ramchoice-package.R | 28 +++- ramchoice-2.0/ramchoice/R/ramdata.R | 8 - ramchoice-2.0/ramchoice/R/revealAtte.R |only ramchoice-2.0/ramchoice/R/revealPref.R |only ramchoice-2.0/ramchoice/build |only ramchoice-2.0/ramchoice/man/genMat.Rd | 39 ++++-- ramchoice-2.0/ramchoice/man/logitAtte.Rd |only ramchoice-2.0/ramchoice/man/logitSimu.Rd |only ramchoice-2.0/ramchoice/man/print.ramchoiceRevealAtte.Rd |only ramchoice-2.0/ramchoice/man/print.ramchoiceRevealPref.Rd |only ramchoice-2.0/ramchoice/man/rAtte.Rd | 76 +++++-------- ramchoice-2.0/ramchoice/man/ramchoice-package.Rd | 26 ++-- ramchoice-2.0/ramchoice/man/ramdata.Rd | 14 +- ramchoice-2.0/ramchoice/man/revealAtte.Rd |only ramchoice-2.0/ramchoice/man/revealPref.Rd |only ramchoice-2.0/ramchoice/man/sumData.Rd | 24 ++-- ramchoice-2.0/ramchoice/man/summary.ramchoiceRevealAtte.Rd |only ramchoice-2.0/ramchoice/man/summary.ramchoiceRevealPref.Rd |only 26 files changed, 159 insertions(+), 117 deletions(-)
Title: Statistical Methods for Sensitivity Analysis in Meta-Analysis
Description: The following methods are implemented to evaluate how sensitive the results of a meta-analysis are to potential bias in meta-analysis and to support Schwarzer et al. (2015) <DOI:10.1007/978-3-319-21416-0>, Chapter 5 'Small-Study Effects in Meta-Analysis':
- Copas selection model described in Copas & Shi (2001) <DOI:10.1177/096228020101000402>;
- limit meta-analysis by Rücker et al. (2011) <DOI:10.1093/biostatistics/kxq046>;
- upper bound for outcome reporting bias by Copas & Jackson (2004) <DOI:10.1111/j.0006-341X.2004.00161.x>;
- imputation methods for missing binary data by Gamble & Hollis (2005) <DOI:10.1016/j.jclinepi.2004.09.013> and Higgins et al. (2008) <DOI:10.1177/1740774508091600>;
- LFK index test and Doi plot by Furuya-Kanamori et al. (2018) <DOI:10.1097/XEB.0000000000000141>.
Author: Guido Schwarzer [cre, aut] (<https://orcid.org/0000-0001-6214-9087>),
James R. Carpenter [aut] (<https://orcid.org/0000-0003-3890-6206>),
Gerta Rücker [aut] (<https://orcid.org/0000-0002-2192-2560>)
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between metasens versions 0.6-0 dated 2021-01-15 and 1.0-0 dated 2021-10-22
metasens-0.6-0/metasens/R/copas.gradient.without.beta.R |only metasens-0.6-0/metasens/R/copas.loglik.with.beta.R |only metasens-0.6-0/metasens/R/copas.loglik.without.beta.R |only metasens-0.6-0/metasens/R/lambda.R |only metasens-1.0-0/metasens/DESCRIPTION | 20 metasens-1.0-0/metasens/MD5 | 90 +-- metasens-1.0-0/metasens/NAMESPACE | 4 metasens-1.0-0/metasens/NEWS.md | 23 metasens-1.0-0/metasens/R/Crowther2003.R | 9 metasens-1.0-0/metasens/R/Moore1998.R | 6 metasens-1.0-0/metasens/R/copas-internal.R |only metasens-1.0-0/metasens/R/copas.R | 52 - metasens-1.0-0/metasens/R/doiplot.R | 8 metasens-1.0-0/metasens/R/forest.orbbound.R | 44 - metasens-1.0-0/metasens/R/funnel.limitmeta.R | 18 metasens-1.0-0/metasens/R/lfkindex.R | 8 metasens-1.0-0/metasens/R/limitmeta.R | 25 metasens-1.0-0/metasens/R/mean-sd-internal.R |only metasens-1.0-0/metasens/R/meta-aux.R |only metasens-1.0-0/metasens/R/meta-chk.R |only metasens-1.0-0/metasens/R/meta-format.R |only metasens-1.0-0/metasens/R/meta-int.R |only metasens-1.0-0/metasens/R/meta-is.R |only metasens-1.0-0/metasens/R/meta-set.R |only metasens-1.0-0/metasens/R/meta-transf.R |only metasens-1.0-0/metasens/R/meta-xlab.R |only metasens-1.0-0/metasens/R/metamiss.R | 91 +-- metasens-1.0-0/metasens/R/metasens-interal.R | 10 metasens-1.0-0/metasens/R/metasens-package.R | 4 metasens-1.0-0/metasens/R/orbbound.R | 2 metasens-1.0-0/metasens/R/plot.copas.R | 8 metasens-1.0-0/metasens/R/print.copas.R | 210 ++++--- metasens-1.0-0/metasens/R/print.limitmeta.R | 378 +++++++++---- metasens-1.0-0/metasens/R/print.orbbound.R | 73 +- metasens-1.0-0/metasens/R/print.summary.copas.R | 226 ++----- metasens-1.0-0/metasens/R/print.summary.limitmeta.R | 460 +++++----------- metasens-1.0-0/metasens/R/summary.copas.R | 15 metasens-1.0-0/metasens/R/summary.limitmeta.R | 4 metasens-1.0-0/metasens/man/Crowther2003.Rd | 9 metasens-1.0-0/metasens/man/Moore1998.Rd | 6 metasens-1.0-0/metasens/man/copas.Rd | 10 metasens-1.0-0/metasens/man/forest.orbbound.Rd | 8 metasens-1.0-0/metasens/man/funnel.limitmeta.Rd | 10 metasens-1.0-0/metasens/man/limitmeta.Rd | 8 metasens-1.0-0/metasens/man/metamiss.Rd | 11 metasens-1.0-0/metasens/man/metasens-package.Rd | 4 metasens-1.0-0/metasens/man/print.copas.Rd | 84 ++ metasens-1.0-0/metasens/man/print.limitmeta.Rd | 78 ++ metasens-1.0-0/metasens/man/print.orbbound.Rd | 8 metasens-1.0-0/metasens/man/print.summary.copas.Rd | 78 -- metasens-1.0-0/metasens/man/print.summary.limitmeta.Rd | 81 -- metasens-1.0-0/metasens/man/summary.copas.Rd | 2 metasens-1.0-0/metasens/man/summary.limitmeta.Rd | 2 53 files changed, 1161 insertions(+), 1026 deletions(-)
Title: Sequential Parameter Optimization Toolbox
Description: A set of tools for model-based optimization and tuning of
algorithms (hyperparameter tuning). It includes surrogate models, optimizers, and design of experiment
approaches. The main interface is spot, which uses sequentially updated
surrogate models for the purpose of efficient optimization. The main goal is
to ease the burden of objective function evaluations, when a single evaluation
requires a significant amount of resources.
Author: Thomas Bartz-Beielstein [aut, cre]
(<https://orcid.org/0000-0002-5938-5158>),
Martin Zaefferer [aut] (<https://orcid.org/0000-0003-2372-2092>),
Frederik Rehbach [aut] (<https://orcid.org/0000-0003-0922-8629>),
Margarita Rebolledo [ctb],
Joerg Stork [ctb] (0000-0002-7471-3498),
Christian Lasarczyk [ctb]
Maintainer: Thomas Bartz-Beielstein <tbb@bartzundbartz.de>
Diff between SPOT versions 2.5.8 dated 2021-08-04 and 2.5.12 dated 2021-10-22
SPOT-2.5.12/SPOT/DESCRIPTION | 10 SPOT-2.5.12/SPOT/MD5 | 42 ++- SPOT-2.5.12/SPOT/NAMESPACE | 10 SPOT-2.5.12/SPOT/NEWS.md | 9 SPOT-2.5.12/SPOT/R/buildPCA.R |only SPOT-2.5.12/SPOT/R/buildRanger.R | 41 +-- SPOT-2.5.12/SPOT/R/plotPCA.R |only SPOT-2.5.12/SPOT/R/plotPCAvariance.R |only SPOT-2.5.12/SPOT/R/resSpot.R | 9 SPOT-2.5.12/SPOT/R/resSpot2.R | 10 SPOT-2.5.12/SPOT/R/spotTools.R | 7 SPOT-2.5.12/SPOT/build/partial.rdb |binary SPOT-2.5.12/SPOT/build/vignette.rds |binary SPOT-2.5.12/SPOT/inst/doc/SPOTVignetteNutshell.R | 67 +---- SPOT-2.5.12/SPOT/inst/doc/SPOTVignetteNutshell.Rmd | 84 ++----- SPOT-2.5.12/SPOT/inst/doc/SPOTVignetteNutshell.html | 239 ++++++++------------ SPOT-2.5.12/SPOT/man/buildPCA.Rd |only SPOT-2.5.12/SPOT/man/buildRanger.Rd | 8 SPOT-2.5.12/SPOT/man/getNatDesignFromCoded.Rd | 5 SPOT-2.5.12/SPOT/man/plotPCA.Rd |only SPOT-2.5.12/SPOT/man/plotPCAvariance.Rd |only SPOT-2.5.12/SPOT/man/resSpot.Rd | 2 SPOT-2.5.12/SPOT/man/resSpot2.Rd | 2 SPOT-2.5.12/SPOT/vignettes/SPOTVignetteNutshell.Rmd | 84 ++----- SPOT-2.5.12/SPOT/vignettes/SPOTVignetteNutshell.md |only SPOT-2.5.8/SPOT/tests/testthat/Rplots.pdf |only 26 files changed, 265 insertions(+), 364 deletions(-)
Title: R Interface to the 'UNU.RAN' Random Variate Generators
Description: Interface to the 'UNU.RAN' library for Universal Non-Uniform RANdom variate generators.
Thus it allows to build non-uniform random number generators from quite arbitrary
distributions. In particular, it provides an algorithm for fast numerical inversion
for distribution with given density function.
In addition, the package contains densities, distribution functions and quantiles
from a couple of distributions.
Author: Josef Leydold [aut, cre],
Wolfgang H"ormann [aut]
Maintainer: Josef Leydold <josef.leydold@wu.ac.at>
Diff between Runuran versions 0.34 dated 2021-08-11 and 0.35 dated 2021-10-22
DESCRIPTION | 10 MD5 | 34 NEWS | 6 configure | 2840 +++++++++++++++++++---------------- configure.ac | 9 inst/doc/Runuran.pdf |binary man/Runuran-package.Rd | 6 man/unuran-class.Rd | 2 man/unuran.cmv-class.Rd | 2 man/unuran.cont-class.Rd | 2 man/unuran.discr-class.Rd | 2 man/unuran.distr-class.Rd | 2 src/Makevars.in | 2 src/README | 2 src/config.h.in | 13 src/unuran-src/methods/mvtdr_init.ch | 2 vignettes/arvag.bib | 4 vignettes/inputs/version.tex | 2 18 files changed, 1637 insertions(+), 1303 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-25 0.9.1
2021-04-05 0.8.0
2020-11-27 0.7.0
2020-10-31 0.6.0
2020-08-27 0.5.0
2020-06-15 0.4.1
2020-03-01 0.3.0
2020-03-01 0.4.0
2019-09-26 0.2.7
2019-09-23 0.2.6
2019-08-29 0.2.5
2019-07-26 0.2.3
2019-07-26 0.2.4
2019-06-23 0.2.2
2019-05-14 0.2.1
2019-05-13 0.2.0
2019-04-25 0.1.3
2019-04-16 0.1.2
2019-03-29 0.1.1
Title: Steve's Miscellaneous Functions
Description: These are miscellaneous functions that I find useful for my research and teaching.
The contents include themes for plots, functions for simulating
quantities of interest from regression models, functions for simulating various
forms of fake data for instructional/research purposes, and many more. All told, the functions
provided here are broadly useful for data organization, data presentation, data recoding,
and data simulation.
Author: Steve Miller [aut, cre],
Ben Bolker [ctb],
Dave Armstrong [ctb],
John Fox [ctb],
Winston Chang [ctb],
Brian Ripley [ctb],
Bill Venables [ctb],
Pascal van Kooten [ctb],
Gerko Vink [ctb],
Paul Williamson [ctb],
Andreas Beger [ctb] (<https://orcid.org/0000-0003-1883-3169>)
Maintainer: Steve Miller <steven.v.miller@gmail.com>
Diff between stevemisc versions 1.2.0 dated 2021-07-27 and 1.3.0 dated 2021-10-22
DESCRIPTION | 16 ++-- MD5 | 36 ++++++---- NAMESPACE | 5 + NEWS.md | 9 ++ R/corvectors.R | 3 R/data.R | 100 +++++++++++++++++++++++++++++- R/ggplot-themes.R | 2 R/linloess_plot.R |only R/ps_spells.R |only README.md | 46 ++++++------- data/fra_leaderyears.rda |only data/gmy_dyadyears.rda |only data/strategic_rivalries.rda |binary data/usa_mids.rda |binary man/corvectors.Rd | 3 man/figures/README-unnamed-chunk-18-4.png |binary man/fra_leaderyears.Rd |only man/ggplot-themes.Rd | 2 man/gmy_dyadyears.Rd |only man/linloess_plot.Rd |only man/ps_spells.Rd |only man/stevepubs.Rd | 2 man/usa_mids.Rd | 49 +++++++------- 23 files changed, 197 insertions(+), 76 deletions(-)
Title: Who Ever Care About the [Art of R] Scripts?
Description: For instructions, check <https://github.com/Hzhang-ouce/ARTofR>. This is a wrapper of 'bannerCommenter', for generating neat comments!
Author: Huanyuan Zhang [aut, cre] (<https://orcid.org/0000-0003-4801-8771>)
Maintainer: Huanyuan Zhang <hyzhang1996@gmail.com>
Diff between ARTofR versions 0.2.3 dated 2021-10-05 and 0.3.3 dated 2021-10-22
DESCRIPTION | 6 +-- MD5 | 18 ++++----- NAMESPACE | 1 NEWS.md | 8 +++- R/xxx_title.R | 36 ++++++++++++++----- README.md | 26 ++++++++++--- inst/doc/User_guide.Rmd | 89 ++++++++++++++++++++++++----------------------- inst/doc/User_guide.html | 10 ++--- man/xxx_title1.Rd | 13 +++++- vignettes/User_guide.Rmd | 89 ++++++++++++++++++++++++----------------------- 10 files changed, 173 insertions(+), 123 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-13 0.5.0
2021-07-23 0.4.9
2021-06-11 0.4.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-12 0.8.4
2021-07-22 0.8.3
2021-04-06 0.8.2
2021-01-07 0.8.1
2020-10-28 0.8.0
2020-09-04 0.7.2
2020-08-28 0.7.1
2020-08-27 0.7.0
2020-07-08 0.6.2
2020-06-23 0.6.1
2020-05-03 0.6.0
2020-04-06 0.5.2
2020-03-01 0.5.1
2020-01-26 0.5.0
2019-11-23 0.4.1
2019-10-13 0.4.0
2019-09-17 0.3.1
2019-07-30 0.3.0
2019-05-18 0.2.10
2019-05-10 0.2.9
2019-03-22 0.2.8
2019-01-07 0.2.7
2018-10-20 0.2.6
2018-06-02 0.2.5
2018-05-19 0.2.4
2018-03-06 0.2.3
2017-12-19 0.2.2
2017-11-23 0.2.1
2017-07-12 0.1.9
2017-06-02 0.1.8
2017-01-06 0.1.7-3
2016-12-28 0.1.7-2
2016-12-26 0.1.7-1
2016-12-23 0.1.7
2016-11-11 0.1.6
2016-10-26 0.1.5
2016-08-29 0.1.4
2016-05-30 0.1.2
2016-01-16 0.1.1
2016-01-15 0.1.0
2015-11-02 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-09 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-22 0.4.7
2021-10-21 0.4.6
2021-10-20 0.4.5
2021-10-19 0.4.4
2021-06-08 0.4.3
2021-02-09 0.4.2
2021-01-27 0.4.1
2021-01-16 0.4.0
2020-07-16 0.3.2
2020-06-23 0.3.1
2020-06-22 0.3
2020-05-12 0.2.2
2020-03-05 0.2.1
2019-07-28 0.2.0
2018-11-20 0.1.8
2018-02-04 0.1.7
2018-01-24 0.1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-15 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-28 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-11 0.5
2021-10-05 0.4
2021-09-20 0.3
2021-08-16 0.2.3
2021-07-28 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-13 0.2.1
2021-05-10 0.2.0
2021-01-18 0.1.0
Title: R Tools for Text Matrices, Embeddings, and Networks
Description: This is a collection of functions optimized for working with
for working with various kinds of text matrices. Focusing on
the text matrix as the primary object – which is represented
either as a base R dense matrix or a 'Matrix' package sparse
matrix – allows for a consistent and intuitive interface
that stays close to the underlying mathematical foundation
of computational text analysis. In particular, the package
includes functions for working with word embeddings,
text networks, and document-term matrices. Methods developed in
Stoltz and Taylor (2019) <doi:10.1007/s42001-019-00048-6>,
Taylor and Stoltz (2020) <doi:10.1007/s42001-020-00075-8>,
Taylor and Stoltz (2020) <doi:10.15195/v7.a23>, and
Stoltz and Taylor (2021) <doi:10.1016/j.poetic.2021.101567>.
Author: Dustin Stoltz [aut, cre] (<https://orcid.org/0000-0002-4774-0765>),
Marshall Taylor [aut] (<https://orcid.org/0000-0002-7440-0723>)
Maintainer: Dustin Stoltz <dss219@lehigh.edu>
Diff between text2map versions 0.1.0 dated 2021-08-24 and 0.1.1 dated 2021-10-22
DESCRIPTION | 25 - MD5 | 73 ++-- NEWS.md |only R/CMDist.R | 27 - R/CoCA.R | 347 ++++++++++----------- R/data.R | 28 + R/utils-dtm.R | 440 ++++++++++++++++++--------- R/utils-embedding.R | 85 +++-- R/utils.R | 26 - README.md | 33 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/CMDist-concept-movers-distance.Rmd | 2 inst/doc/CMDist-concept-movers-distance.html | 6 inst/doc/concept-class-analysis.html | 4 man/CMDist.Rd | 24 - man/CoCA.Rd | 31 - man/anchor_lists.Rd | 12 man/dtm_builder.Rd | 70 ++-- man/dtm_resampler.Rd | 23 + man/dtm_stats.Rd | 8 man/dtm_stopper.Rd | 81 +++- man/find_projection.Rd | 2 man/find_rejection.Rd | 9 man/get_anchors.Rd | 34 +- man/get_centroid.Rd | 3 man/get_direction.Rd | 7 man/get_regions.Rd | 21 - man/get_stoplist.Rd | 20 - man/jfk_speech.Rd | 2 man/plot.CoCA.Rd | 2 man/stoplists.Rd | 15 man/text2map-package.Rd | 15 man/vocab_builder.Rd | 9 tests/testthat/helper-data.R | 21 - tests/testthat/test-CMDist-parallel.R | 5 tests/testthat/test-utils-dtm.R | 162 ++++++++- vignettes/CMDist-concept-movers-distance.Rmd | 2 38 files changed, 1045 insertions(+), 629 deletions(-)
Title: Statistical Methods for Archaeology
Description: Statistical pattern recognition and dating using archaeological artefacts assemblages.
Package of statistical tools for archaeology.
hclustcompro(perioclust): Bellanger Lise, Coulon Arthur, Husi Philippe (2020, ISBN:978-3-030-60103-4).
mapclust: Bellanger Lise, Coulon Arthur, Husi Philippe (2021) <doi:10.1016/j.jas.2021.105431>.
seriograph: Desachy Bruno (2004) <doi:10.3406/pica.2004.2396>.
Author: Lise Bellanger [aut],
Philippe Husi [aut],
Arthur Coulon [aut, cre],
Bruno Desachy [ctb],
Benjamin Martineau [ctb]
Maintainer: Arthur Coulon <arthur-coulon@outlook.fr>
Diff between SPARTAAS versions 1.0.0 dated 2021-02-22 and 1.1.0 dated 2021-10-22
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Title: Probabilistic Forecast Combination Using CRPS Learning
Description: Combine probabilistic forecasts using CRPS learning algorithms proposed in Berrisch, Ziel (2021) <arXiv:2102.00968>. The package implements multiple online learning algorithms like Bernstein online aggregation; see Wintenberger (2014) <arXiv:1404.1356>. Quantile regression is also implemented for comparison purposes. Model parameters can be tuned automatically with respect to the loss of the forecast combination. Methods like predict(), update(), plot() and print() are available for convenience. This package utilizes the optim C++ library for numeric optimization <https://github.com/kthohr/optim>.
Author: Jonathan Berrisch [cre] (<https://orcid.org/0000-0002-4944-9074>),
Florian Ziel [aut] (<https://orcid.org/0000-0002-2974-2660>)
Maintainer: Jonathan Berrisch <Jonathan@Berrisch.biz>
Diff between profoc versions 0.8.4 dated 2021-09-15 and 0.8.5 dated 2021-10-22
DESCRIPTION | 8 - MD5 | 34 ++--- NEWS.md | 13 ++ R/RcppExports.R | 24 +-- R/batch.R | 101 ++++++++++++---- R/online.R | 158 +++++++++++++++++++------ build/partial.rdb |binary inst/include/misc.h | 9 - inst/include/splines.h | 22 +-- man/online.Rd | 4 src/RcppExports.cpp | 111 +++++------------ src/batch.cpp | 107 ++--------------- src/misc.cpp | 28 +++- src/online.cpp | 182 +++++------------------------ src/oracle.cpp | 4 src/splines.cpp | 54 +++----- tests/testthat/test-combination_sampling.R | 10 - tests/testthat/test-init_weights.R | 10 - 18 files changed, 403 insertions(+), 476 deletions(-)
Title: Automatic Time Series Analysis and Forecasting Using the Ata
Method
Description: The Ata method (Yapar et al. (2019) <doi:10.15672/hujms.461032>), an alternative to exponential smoothing (described in Yapar (2016) <doi:10.15672/HJMS.201614320580>,
Yapar et al. (2017) <doi:10.15672/HJMS.2017.493>), is a new univariate time series forecasting method which provides innovative solutions to issues faced during the
initialization and optimization stages of existing forecasting methods. Forecasting performance of the Ata method is superior to existing methods both in terms of easy
implementation and accurate forecasting. It can be applied to non-seasonal or seasonal time series which can be decomposed into four components (remainder, level, trend
and seasonal). This methodology performed well on the M3 and M4-competition data. This package was written based on Ali Sabri Taylan’s PhD dissertation.
Author: Ali Sabri Taylan [aut, cre, cph]
(<https://orcid.org/0000-0001-9514-934X>),
Hanife Taylan Selamlar [aut, cph]
(<https://orcid.org/0000-0002-4091-884X>),
Guckan Yapar [aut, ths, cph] (<https://orcid.org/0000-0002-0971-6676>)
Maintainer: Ali Sabri Taylan <alisabritaylan@gmail.com>
Diff between ATAforecasting versions 0.0.54 dated 2021-10-20 and 0.0.55 dated 2021-10-22
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/SubATA_Multiple.R | 4 ++-- R/SubATA_MultipleO.R | 4 ++-- build/partial.rdb |binary 5 files changed, 13 insertions(+), 13 deletions(-)
More information about ATAforecasting at CRAN
Permanent link
Title: Variance Components Testing for Linear and Nonlinear Mixed
Effects Models
Description: An implementation of the Likelihood ratio Test (LRT) for testing that,
in a (non)linear mixed effects model, the variances of a subset of the random
effects are equal to zero. There is no restriction on the subset of variances
that can be tested: for example, it is possible to test that all the variances
are equal to zero. Note that the implemented test is asymptotic.
This package should be used on model fits from packages 'nlme', 'lmer', and 'saemix'.
Charlotte Baey, Paul-Henry Cournède and Estelle Kuhn (2019) <doi:10.1016/j.csda.2019.01.014>.
Author: Charlotte Baey [aut, cre] (<https://orcid.org/0000-0002-1413-1058>),
Estelle Kuhn [aut]
Maintainer: Charlotte Baey <charlotte.baey@univ-lille.fr>
Diff between varTestnlme versions 1.1.0 dated 2021-10-11 and 1.1.1 dated 2021-10-22
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NEWS.md | 4 ++++ R/lme4_utilities.R | 6 +++--- R/lme_utilities.R | 6 +++--- README.md | 14 ++++++-------- 6 files changed, 27 insertions(+), 25 deletions(-)
Title: Permutation Tests for Regression, (Repeated Measures)
ANOVA/ANCOVA and Comparison of Signals
Description: Functions to compute p-values based on permutation tests. Regression, ANOVA and ANCOVA, omnibus F-tests, marginal unilateral and bilateral t-tests are available. Several methods to handle nuisance variables are implemented (Kherad-Pajouh, S., & Renaud, O. (2010) <doi:10.1016/j.csda.2010.02.015> ; Kherad-Pajouh, S., & Renaud, O. (2014) <doi:10.1007/s00362-014-0617-3> ; Winkler, A. M., Ridgway, G. R., Webster, M. A., Smith, S. M., & Nichols, T. E. (2014) <doi:10.1016/j.neuroimage.2014.01.060>). An extension for the comparison of signals issued from experimental conditions (e.g. EEG/ERP signals) is provided. Several corrections for multiple testing are possible, including the cluster-mass statistic (Maris, E., & Oostenveld, R. (2007) <doi:10.1016/j.jneumeth.2007.03.024>) and the threshold-free cluster enhancement (Smith, S. M., & Nichols, T. E. (2009) <doi:10.1016/j.neuroimage.2008.03.061>).
Author: Jaromil Frossard [aut, cre],
Olivier Renaud [aut]
Maintainer: Jaromil Frossard <jaromil.frossard@unige.ch>
Diff between permuco versions 1.1.0 dated 2019-12-19 and 1.1.1 dated 2021-10-22
permuco-1.1.0/permuco/NEWS |only permuco-1.1.0/permuco/R/cluster_fit_model.R |only permuco-1.1.0/permuco/R/cluster_nuisance_var.R |only permuco-1.1.0/permuco/R/cluster_nuisance_var_rnd.R |only permuco-1.1.0/permuco/R/cluster_private.R |only permuco-1.1.0/permuco/R/cluster_public.R |only permuco-1.1.0/permuco/R/fit_model.R |only permuco-1.1.0/permuco/R/nuisance_var.R |only permuco-1.1.0/permuco/R/nuisance_var_rnd.R |only permuco-1.1.0/permuco/R/private.R |only permuco-1.1.0/permuco/R/public.R |only permuco-1.1.0/permuco/vignettes/permuco_tutorial_01.pdf |only permuco-1.1.1/permuco/DESCRIPTION | 24 permuco-1.1.1/permuco/MD5 | 149 ++-- permuco-1.1.1/permuco/NAMESPACE | 12 permuco-1.1.1/permuco/NEWS.md |only permuco-1.1.1/permuco/R/Pmat.R |only permuco-1.1.1/permuco/R/Pmat_product.R |only permuco-1.1.1/permuco/R/RcppExports.R |only permuco-1.1.1/permuco/R/anova_table.R |only permuco-1.1.1/permuco/R/anova_table_rnd.R |only permuco-1.1.1/permuco/R/aovperm.R |only permuco-1.1.1/permuco/R/aovperm_fix.R | 19 permuco-1.1.1/permuco/R/aovperm_rnd.R | 12 permuco-1.1.1/permuco/R/as.Pmat.R |only permuco-1.1.1/permuco/R/assign.Pmat.R |only permuco-1.1.1/permuco/R/changeContrast.R |only permuco-1.1.1/permuco/R/checkBalancedData.R |only permuco-1.1.1/permuco/R/check_P.R |only permuco-1.1.1/permuco/R/check_distribution.R |only permuco-1.1.1/permuco/R/cluster_methods.R | 494 +++++++------- permuco-1.1.1/permuco/R/cluster_methods_rnd.R |only permuco-1.1.1/permuco/R/cluster_table.R | 4 permuco-1.1.1/permuco/R/cluster_table_clustermass.R |only permuco-1.1.1/permuco/R/clusterlm.R |only permuco-1.1.1/permuco/R/clusterlm_fix.R | 26 permuco-1.1.1/permuco/R/clusterlm_rnd.R | 12 permuco-1.1.1/permuco/R/compute_all_pvalue.R |only permuco-1.1.1/permuco/R/compute_benjamini_hochberg.R |only permuco-1.1.1/permuco/R/compute_bonferroni.R |only permuco-1.1.1/permuco/R/compute_clusterdepth.R |only permuco-1.1.1/permuco/R/compute_clusterdepth_head.R |only permuco-1.1.1/permuco/R/compute_clustermass.R |only permuco-1.1.1/permuco/R/compute_degree_freedom_fix.R |only permuco-1.1.1/permuco/R/compute_degree_freedom_rnd.R |only permuco-1.1.1/permuco/R/compute_holm.R |only permuco-1.1.1/permuco/R/compute_maxT.R |only permuco-1.1.1/permuco/R/compute_minP.R |only permuco-1.1.1/permuco/R/compute_pvalue.R |only permuco-1.1.1/permuco/R/compute_stepdownmaxT.R |only permuco-1.1.1/permuco/R/compute_tfce.R |only permuco-1.1.1/permuco/R/compute_tfce_statistic.R |only permuco-1.1.1/permuco/R/compute_troendle.R |only permuco-1.1.1/permuco/R/data.R | 4 permuco-1.1.1/permuco/R/depth_distribution.R |only permuco-1.1.1/permuco/R/distribution_to_pscale.R |only permuco-1.1.1/permuco/R/effect_anova_rnd.R |only permuco-1.1.1/permuco/R/full_table.R | 1 permuco-1.1.1/permuco/R/get_cluster.R |only permuco-1.1.1/permuco/R/khatrirao.R |only permuco-1.1.1/permuco/R/link.R |only permuco-1.1.1/permuco/R/lmperm.R |only permuco-1.1.1/permuco/R/lmperm_fix.R | 14 permuco-1.1.1/permuco/R/methods.R | 303 +++++--- permuco-1.1.1/permuco/R/methods_rnd.R |only permuco-1.1.1/permuco/R/np.R |only permuco-1.1.1/permuco/R/old_cluster_methods.R |only permuco-1.1.1/permuco/R/old_cluster_private.R |only permuco-1.1.1/permuco/R/plot.clusterlm.R |only permuco-1.1.1/permuco/R/plot.lmperm.R |only permuco-1.1.1/permuco/R/print.clusterlm.R |only permuco-1.1.1/permuco/R/print.listof_multcomp_table.R |only permuco-1.1.1/permuco/R/print.lmperm.R |only permuco-1.1.1/permuco/R/print.lmpermutation_table.R |only permuco-1.1.1/permuco/R/print.multcomp_table.R |only permuco-1.1.1/permuco/R/summary.clusterlm.R |only permuco-1.1.1/permuco/R/summary.lmperm.R |only permuco-1.1.1/permuco/R/switch_multcomp.R |only permuco-1.1.1/permuco/README.md | 158 +++- permuco-1.1.1/permuco/build/vignette.rds |binary permuco-1.1.1/permuco/inst/CITATION |only permuco-1.1.1/permuco/inst/doc/permuco_tutorial.pdf |binary permuco-1.1.1/permuco/inst/doc/permuco_tutorial.pdf.asis | 1 permuco-1.1.1/permuco/man/Pmat.Rd | 109 +-- permuco-1.1.1/permuco/man/Pmat_product.Rd |only permuco-1.1.1/permuco/man/aovperm.Rd | 213 +++--- permuco-1.1.1/permuco/man/as.Pmat.Rd | 32 permuco-1.1.1/permuco/man/attentionshifting_design.Rd | 59 - permuco-1.1.1/permuco/man/attentionshifting_signal.Rd | 45 - permuco-1.1.1/permuco/man/clusterlm.Rd | 220 +++--- permuco-1.1.1/permuco/man/compute_clusterdepth.Rd |only permuco-1.1.1/permuco/man/compute_clusterdepth_head.Rd |only permuco-1.1.1/permuco/man/compute_clustermass.Rd | 57 - permuco-1.1.1/permuco/man/compute_maxT.Rd |only permuco-1.1.1/permuco/man/compute_minP.Rd | 43 - permuco-1.1.1/permuco/man/compute_stepdownmaxT.Rd |only permuco-1.1.1/permuco/man/compute_tfce.Rd | 53 - permuco-1.1.1/permuco/man/compute_troendle.Rd | 43 - permuco-1.1.1/permuco/man/emergencycost.Rd | 59 - permuco-1.1.1/permuco/man/get_cluster.Rd |only permuco-1.1.1/permuco/man/jpah2016.Rd | 65 + permuco-1.1.1/permuco/man/lmperm.Rd | 154 ++-- permuco-1.1.1/permuco/man/plot.clusterlm.Rd | 91 +- permuco-1.1.1/permuco/man/plot.lmperm.Rd | 49 - permuco-1.1.1/permuco/man/print.clusterlm.Rd | 45 - permuco-1.1.1/permuco/man/summary.clusterlm.Rd | 73 +- permuco-1.1.1/permuco/src |only permuco-1.1.1/permuco/tests |only permuco-1.1.1/permuco/vignettes/permuco_tutorial.pdf.asis | 1 109 files changed, 1544 insertions(+), 1100 deletions(-)
Title: Mutation Models for Pedigree Likelihood Computations
Description: A collection of functions for modelling mutations in pedigrees with
marker data, as used e.g. in likelihood computations with microsatellite data.
Implemented models include proportional and stepwise models, as well as random
models for experimental work, and custom models allowing the user to apply any
valid mutation matrix. Allele lumping is done following the lumpability criteria
of Kemeny and Snell (1976), ISBN:0387901922.
Author: Magnus Dehli Vigeland [aut, cre]
(<https://orcid.org/0000-0002-9134-4962>)
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedmut versions 0.2.0 dated 2020-07-30 and 0.3.0 dated 2021-10-22
pedmut-0.2.0/pedmut/man/figures/README-pedmut-example-1.png |only pedmut-0.3.0/pedmut/DESCRIPTION | 9 - pedmut-0.3.0/pedmut/MD5 | 24 +- pedmut-0.3.0/pedmut/NEWS.md | 5 pedmut-0.3.0/pedmut/R/mutationMatrix.R | 2 pedmut-0.3.0/pedmut/R/mutationModel.R | 4 pedmut-0.3.0/pedmut/R/pedmut-package.R |only pedmut-0.3.0/pedmut/README.md | 101 ++++++------ pedmut-0.3.0/pedmut/man/figures/README-ex1-ped-1.png |only pedmut-0.3.0/pedmut/man/mutationMatrix.Rd | 2 pedmut-0.3.0/pedmut/man/pedmut.Rd |only pedmut-0.3.0/pedmut/tests/testthat/test-lumping.R | 1 pedmut-0.3.0/pedmut/tests/testthat/test-mutationMatrix.R | 1 pedmut-0.3.0/pedmut/tests/testthat/test-mutationModel.R | 1 pedmut-0.3.0/pedmut/tests/testthat/test-properties.R | 1 15 files changed, 77 insertions(+), 74 deletions(-)
Title: Inference of Gene Regulatory Networks
Description: We present 'corto' (Correlation Tool), a simple package to infer
gene regulatory networks and visualize master regulators from gene expression
data using DPI (Data Processing Inequality) and bootstrapping to recover edges.
An initial step is performed to calculate all significant
edges between a list of source nodes (centroids) and target genes.
Then all triplets containing two centroids and one target are tested
in a DPI step which removes edges. A bootstrapping process then calculates
the robustness of the network, eventually re-adding edges previously removed by DPI.
The algorithm has been optimized to run outside a computing cluster, using a fast correlation
implementation. The package finally provides functions to calculate network enrichment
analysis from RNA-Seq and ATAC-Seq signatures as described in the article by
Giorgi lab (2020) <doi:10.1093/bioinformatics/btaa223>.
Author: Federico M. Giorgi [aut, cre],
Daniele Mercatelli [ctb],
Gonzalo Lopez-Garcia [ctb]
Maintainer: Federico M. Giorgi <federico.giorgi@gmail.com>
Diff between corto versions 1.1.9 dated 2021-09-29 and 1.1.10 dated 2021-10-22
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- README.md | 6 +++--- inst/doc/corto_vignette.Rmd | 6 +++--- inst/doc/corto_vignette.html | 8 ++++---- vignettes/corto_vignette.Rmd | 6 +++--- 6 files changed, 21 insertions(+), 21 deletions(-)
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') for
temporal data in an data- and model-oriented format. The 'tsibble'
provides tools to easily manipulate and analyse temporal data, such as
filling in time gaps and aggregating over calendar periods.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>),
Mitchell O'Hara-Wild [aut] (<https://orcid.org/0000-0001-6729-7695>),
Tyler Smith [ctb],
Wil Davis [ctb]
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 1.0.1 dated 2021-04-12 and 1.1.0 dated 2021-10-22
DESCRIPTION | 6 - MD5 | 82 +++++++-------- NAMESPACE | 9 - NEWS.md | 11 ++ R/as-tsibble.R | 16 ++ R/dplyr-verbs.R | 8 + R/filter-index.R | 10 + R/gaps.R | 126 +++++++++++++++-------- R/holiday.R | 16 -- R/reexports.R | 8 - R/rolling.R | 3 R/tsibble2ts.R | 7 - R/yearmonth.R | 19 +++ R/yearquarter.R | 9 + R/yearweek.R | 9 + R/zzz.R | 2 build/tsibble.pdf |binary build/vignette.rds |binary inst/doc/faq.R | 2 inst/doc/faq.Rmd | 2 inst/doc/faq.html | 198 ++++++++++++++++++------------------- inst/doc/implicit-na.R | 2 inst/doc/implicit-na.Rmd | 2 inst/doc/implicit-na.html | 138 ++++++++++++------------- inst/doc/intro-tsibble.R | 2 inst/doc/intro-tsibble.Rmd | 2 inst/doc/intro-tsibble.html | 126 +++++++++++------------ man/count_gaps.Rd | 14 ++ man/fill_gaps.Rd | 6 - man/has_gaps.Rd | 8 + man/reexports.Rd | 4 man/scan_gaps.Rd | 8 + man/slide_tsibble.Rd | 1 man/stretch_tsibble.Rd | 1 man/tile_tsibble.Rd | 1 man/year-month.Rd | 6 + tests/testthat/test-filter-index.R | 5 tests/testthat/test-tsibble2ts.R | 6 + tests/testthat/test-yearmonth.R | 5 vignettes/faq.Rmd | 2 vignettes/implicit-na.Rmd | 2 vignettes/intro-tsibble.Rmd | 2 42 files changed, 519 insertions(+), 367 deletions(-)
Title: Docker Client
Description: Work with containers over the Docker API. Rather than
using system calls to interact with a docker client, using the
API directly means that we can receive richer information from
docker. The interface in the package is automatically generated
using the 'OpenAPI' (a.k.a., 'swagger') specification, and all
return values are checked in order to make them type stable.
Author: Rich FitzJohn [aut, cre]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between stevedore versions 0.9.3 dated 2020-01-12 and 0.9.4 dated 2021-10-22
DESCRIPTION | 8 MD5 | 44 R/docker_client_support.R | 2 R/stevedore.R | 2 R/swagger_types.R | 2 README.md | 4 build/stevedore.pdf |binary build/vignette.rds |binary inst/doc/cookbook.html | 539 ++++--- inst/doc/examples.html | 639 ++++---- inst/doc/stevedore.Rmd | 2 inst/doc/stevedore.html | 1784 ++++++++----------------- man/stevedore.Rd | 2 tests/testthat/helper-stevedore.R | 11 tests/testthat/test-docker-client-containers.R | 16 tests/testthat/test-docker-client-services.R | 6 tests/testthat/test-docker-client.R | 10 tests/testthat/test-http-compat.R | 7 tests/testthat/test-http-curl.R | 14 tests/testthat/test-http-httppipe.R | 2 tests/testthat/test-httppipe-unix.R | 12 tests/testthat/test-util.R | 12 vignettes/stevedore.Rmd | 2 23 files changed, 1397 insertions(+), 1723 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 2.8-4 dated 2021-09-15 and 2.8-5 dated 2021-10-22
DESCRIPTION | 8 +- MD5 | 12 +-- R/polarPlot.R | 94 +++++++++++++++++++++++++++++- R/selectRunning.R | 158 ++++++++++++++++++++++++++++----------------------- R/windRose.R | 12 +++ R/zzz.R | 2 man/selectRunning.Rd | 21 +++++- 7 files changed, 217 insertions(+), 90 deletions(-)
Title: Multimodal and Multilevel Network Analysis
Description: A set of tools that extend common social network analysis packages
for analysing multimodal and multilevel networks.
It includes functions for one- and two-mode (and sometimes three-mode)
centrality, centralization, clustering, and constraint,
as well as for one- and two-mode network regression and block-modelling.
All functions operate with matrices, edge lists,
and 'igraph', 'network'/'sna', and 'tidygraph' objects.
The package is released as a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book.
Author: James Hollway [cph, cre, aut, ctb] (IHEID,
<https://orcid.org/0000-0002-8361-9647>)
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 0.7.1 dated 2021-09-25 and 0.8.1 dated 2021-10-22
migraph-0.7.1/migraph/R/clustering.R |only migraph-0.7.1/migraph/R/plot.R |only migraph-0.7.1/migraph/R/plot_releases.R |only migraph-0.7.1/migraph/R/read_ucinet.R |only migraph-0.7.1/migraph/man/graph_clustering.Rd |only migraph-0.7.1/migraph/man/plot.blockmodel.Rd |only migraph-0.7.1/migraph/man/plot.igraph.Rd |only migraph-0.7.1/migraph/man/plot_releases.Rd |only migraph-0.7.1/migraph/tests/testthat/test-clustering.R |only migraph-0.7.1/migraph/tests/testthat/test-plot_releases.R |only migraph-0.8.1/migraph/DESCRIPTION | 17 migraph-0.8.1/migraph/MD5 | 145 +++++--- migraph-0.8.1/migraph/NAMESPACE | 111 +++++- migraph-0.8.1/migraph/NEWS.md | 126 ++++++- migraph-0.8.1/migraph/R/autographr.R |only migraph-0.8.1/migraph/R/balance.R |only migraph-0.8.1/migraph/R/blockmodel.R | 120 +++++- migraph-0.8.1/migraph/R/blockmodel_visualisation.R |only migraph-0.8.1/migraph/R/census.R |only migraph-0.8.1/migraph/R/centralization.R | 103 +++-- migraph-0.8.1/migraph/R/coercion.R | 88 ++-- migraph-0.8.1/migraph/R/cohesion.R |only migraph-0.8.1/migraph/R/constraint.R | 46 +- migraph-0.8.1/migraph/R/create.R | 105 ++--- migraph-0.8.1/migraph/R/data_brandes.R |only migraph-0.8.1/migraph/R/data_bristol.R | 4 migraph-0.8.1/migraph/R/data_coleman.R |only migraph-0.8.1/migraph/R/data_elite.R | 42 +- migraph-0.8.1/migraph/R/data_evs.R | 6 migraph-0.8.1/migraph/R/data_karateka.R |only migraph-0.8.1/migraph/R/data_m182.R |only migraph-0.8.1/migraph/R/data_marvel.R |only migraph-0.8.1/migraph/R/data_projection.R |only migraph-0.8.1/migraph/R/data_ryanair.R | 21 - migraph-0.8.1/migraph/R/data_senate112.R | 27 - migraph-0.8.1/migraph/R/data_southern_women.R | 4 migraph-0.8.1/migraph/R/generate.R | 22 - migraph-0.8.1/migraph/R/ggevolution.R | 99 ++++- migraph-0.8.1/migraph/R/ggidentify.R |only migraph-0.8.1/migraph/R/gglineage.R | 31 + migraph-0.8.1/migraph/R/ggraphgrid.R | 107 ++--- migraph-0.8.1/migraph/R/is.R | 22 - migraph-0.8.1/migraph/R/netlm.R | 82 ++-- migraph-0.8.1/migraph/R/project.R | 18 - migraph-0.8.1/migraph/R/read.R |only migraph-0.8.1/migraph/R/reexports_ggplot2.R |only migraph-0.8.1/migraph/R/reexports_tidygraph.R | 16 migraph-0.8.1/migraph/R/smallworld.R | 45 +- migraph-0.8.1/migraph/R/sysdata.rda |only migraph-0.8.1/migraph/R/to.R | 252 ++++++++++++-- migraph-0.8.1/migraph/README.md | 19 - migraph-0.8.1/migraph/build |only migraph-0.8.1/migraph/data/brandes.rda |only migraph-0.8.1/migraph/data/ison_bb.rda |only migraph-0.8.1/migraph/data/ison_bm.rda |only migraph-0.8.1/migraph/data/ison_coleman.rda |only migraph-0.8.1/migraph/data/ison_karateka.rda |only migraph-0.8.1/migraph/data/ison_m182.rda |only migraph-0.8.1/migraph/data/ison_marvel_relationships.rda |only migraph-0.8.1/migraph/data/ison_marvel_teams.rda |only migraph-0.8.1/migraph/data/ison_mb.rda |only migraph-0.8.1/migraph/data/ison_mm.rda |only migraph-0.8.1/migraph/inst/doc |only migraph-0.8.1/migraph/man/autographr.Rd |only migraph-0.8.1/migraph/man/blockmodel.Rd | 24 + migraph-0.8.1/migraph/man/blockmodel_visualisation.Rd |only migraph-0.8.1/migraph/man/brandes.Rd |only migraph-0.8.1/migraph/man/census.Rd |only migraph-0.8.1/migraph/man/centrality.Rd | 2 migraph-0.8.1/migraph/man/centralization.Rd | 6 migraph-0.8.1/migraph/man/coercion.Rd | 11 migraph-0.8.1/migraph/man/cohesion.Rd |only migraph-0.8.1/migraph/man/create.Rd | 10 migraph-0.8.1/migraph/man/generate.Rd | 2 migraph-0.8.1/migraph/man/ggatyear.Rd |only migraph-0.8.1/migraph/man/ggevolution.Rd | 2 migraph-0.8.1/migraph/man/ggidentify.Rd |only migraph-0.8.1/migraph/man/graph_balance.Rd |only migraph-0.8.1/migraph/man/graph_triad_census.Rd |only migraph-0.8.1/migraph/man/is.Rd | 9 migraph-0.8.1/migraph/man/ison_coleman.Rd |only migraph-0.8.1/migraph/man/ison_community.Rd |only migraph-0.8.1/migraph/man/ison_marvel.Rd |only migraph-0.8.1/migraph/man/ison_projection.Rd |only migraph-0.8.1/migraph/man/marvel.Rd |only migraph-0.8.1/migraph/man/mpn_evs.Rd | 6 migraph-0.8.1/migraph/man/mpn_ryanair.Rd | 17 migraph-0.8.1/migraph/man/mpn_senate112.Rd | 27 - migraph-0.8.1/migraph/man/netlm.Rd | 21 - migraph-0.8.1/migraph/man/node_constraint.Rd | 11 migraph-0.8.1/migraph/man/node_smallworld.Rd | 21 - migraph-0.8.1/migraph/man/read.Rd | 17 migraph-0.8.1/migraph/man/reexports.Rd | 15 migraph-0.8.1/migraph/man/to.Rd | 42 ++ migraph-0.8.1/migraph/tests/testthat/Rplots.pdf |binary migraph-0.8.1/migraph/tests/testthat/test-balance.R |only migraph-0.8.1/migraph/tests/testthat/test-cohesion.R |only migraph-0.8.1/migraph/tests/testthat/test-ggidentify.R |only migraph-0.8.1/migraph/tests/testthat/test-gglineage.R | 24 + migraph-0.8.1/migraph/vignettes |only 100 files changed, 1328 insertions(+), 617 deletions(-)
Title: Validate 'JSON' Schema
Description: Uses the node library 'is-my-json-valid' or 'ajv' to
validate 'JSON' against a 'JSON' schema. Drafts 04, 06 and 07 of
'JSON' schema are supported.
Author: Rich FitzJohn [aut, cre],
Rob Ashton [aut],
Alicia Schep [ctb],
Ian Lyttle [ctb],
Kara Woo [ctb],
Mathias Buus [cph],
Evgeny Poberezkin [cph]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between jsonvalidate versions 1.1.0 dated 2019-06-25 and 1.3.1 dated 2021-10-22
DESCRIPTION | 22 MD5 | 34 NEWS.md | 15 R/read.R |only R/util.R |only R/validate.R | 343 R/zzz.R |only README.md | 38 build/vignette.rds |binary inst/LICENSE.ajv | 2 inst/WORDLIST |only inst/bundle.js |14467 ++++++++++++++++++++++++---------------- inst/doc/jsonvalidate.R | 51 inst/doc/jsonvalidate.Rmd | 45 inst/doc/jsonvalidate.html | 71 man/json_validate.Rd | 48 man/json_validator.Rd | 74 tests/testthat/test-read.R |only tests/testthat/test-util.R |only tests/testthat/test-validator.R | 562 + vignettes/jsonvalidate.Rmd | 45 21 files changed, 9816 insertions(+), 6001 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. The package includes methods for spectral fitting: Wilson
(2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018)
<DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] (<https://orcid.org/0000-0002-2089-3956>),
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 1.14.0 dated 2021-07-23 and 1.15.0 dated 2021-10-22
spant-1.14.0/spant/man/comb_csv_results.Rd |only spant-1.15.0/spant/DESCRIPTION | 16 - spant-1.15.0/spant/MD5 | 213 +++++++-------- spant-1.15.0/spant/NAMESPACE | 4 spant-1.15.0/spant/NEWS.md | 11 spant-1.15.0/spant/R/abfit.R | 21 + spant-1.15.0/spant/R/basis_set.R | 72 ++++- spant-1.15.0/spant/R/fitting.R | 15 + spant-1.15.0/spant/R/mrs_data_proc.R | 29 +- spant-1.15.0/spant/R/rats.R | 2 spant-1.15.0/spant/R/svs_batch_fit.R | 23 + spant-1.15.0/spant/R/utils.R | 83 +++-- spant-1.15.0/spant/R/varpro.R | 6 spant-1.15.0/spant/R/varpro_3_para.R | 6 spant-1.15.0/spant/R/varpro_basic.R |only spant-1.15.0/spant/inst/CITATION |only spant-1.15.0/spant/inst/doc/spant-intro.html | 140 ++++----- spant-1.15.0/spant/inst/doc/spant-preprocessing.html | 4 spant-1.15.0/spant/man/acquire.Rd | 46 +-- spant-1.15.0/spant/man/add_noise.Rd | 46 +-- spant-1.15.0/spant/man/align.Rd | 2 spant-1.15.0/spant/man/append_coils.Rd | 38 +- spant-1.15.0/spant/man/append_dyns.Rd | 38 +- spant-1.15.0/spant/man/apply_axes.Rd | 60 ++-- spant-1.15.0/spant/man/apply_mrs.Rd | 44 +-- spant-1.15.0/spant/man/auto_phase.Rd | 50 +-- spant-1.15.0/spant/man/bbase.Rd | 46 +-- spant-1.15.0/spant/man/bc_constant.Rd | 40 +- spant-1.15.0/spant/man/calc_ed_from_lambda.Rd | 42 +- spant-1.15.0/spant/man/calc_peak_info_vec.Rd | 40 +- spant-1.15.0/spant/man/calc_spec_diff.Rd | 42 +- spant-1.15.0/spant/man/calc_spec_snr.Rd | 88 +++--- spant-1.15.0/spant/man/crop_td_pts.Rd | 42 +- spant-1.15.0/spant/man/ecc.Rd | 52 +-- spant-1.15.0/spant/man/elliptical_mask.Rd | 58 ++-- spant-1.15.0/spant/man/est_noise_sd.Rd | 46 +-- spant-1.15.0/spant/man/fit_amps.Rd | 58 ++-- spant-1.15.0/spant/man/fp_phase_correct.Rd | 44 +-- spant-1.15.0/spant/man/ft_dyn.Rd | 38 +- spant-1.15.0/spant/man/gausswin_2d.Rd | 62 ++-- spant-1.15.0/spant/man/get_1h_brain_basis_paras.Rd | 48 +-- spant-1.15.0/spant/man/get_1h_brain_basis_paras_v1.Rd | 48 +-- spant-1.15.0/spant/man/get_1h_brain_basis_paras_v2.Rd | 48 +-- spant-1.15.0/spant/man/get_2d_psf.Rd | 46 +-- spant-1.15.0/spant/man/get_head_dyns.Rd |only spant-1.15.0/spant/man/get_mrsi2d_seg.Rd | 48 +-- spant-1.15.0/spant/man/get_mrsi_voi.Rd | 46 +-- spant-1.15.0/spant/man/get_mrsi_voxel.Rd | 50 +-- spant-1.15.0/spant/man/get_mrsi_voxel_xy_psf.Rd | 50 +-- spant-1.15.0/spant/man/get_seg_ind.Rd | 42 +- spant-1.15.0/spant/man/get_tail_dyns.Rd |only spant-1.15.0/spant/man/get_voi_seg.Rd | 38 +- spant-1.15.0/spant/man/get_voi_seg_psf.Rd | 38 +- spant-1.15.0/spant/man/get_voxel.Rd | 54 +-- spant-1.15.0/spant/man/grid_shift_xy.Rd | 42 +- spant-1.15.0/spant/man/lb.Rd | 54 +-- spant-1.15.0/spant/man/mean_mrs_list.Rd | 34 +- spant-1.15.0/spant/man/mrs_data2basis.Rd | 42 +- spant-1.15.0/spant/man/mrs_data2vec.Rd | 54 +-- spant-1.15.0/spant/man/nifti_flip_lr.Rd | 42 +- spant-1.15.0/spant/man/peak_info.Rd | 72 ++--- spant-1.15.0/spant/man/plot_bc.Rd | 36 +- spant-1.15.0/spant/man/plot_slice_map.Rd | 94 +++--- spant-1.15.0/spant/man/re_weighting.Rd | 42 +- spant-1.15.0/spant/man/read_basis.Rd | 4 spant-1.15.0/spant/man/read_basis_ac.Rd |only spant-1.15.0/spant/man/read_lcm_coord.Rd | 36 +- spant-1.15.0/spant/man/read_mrs_tqn.Rd | 64 ++-- spant-1.15.0/spant/man/read_tqn_result.Rd | 48 +-- spant-1.15.0/spant/man/rectangular_mask.Rd | 58 ++-- spant-1.15.0/spant/man/rep_mrs.Rd | 54 +-- spant-1.15.0/spant/man/resample_img.Rd | 42 +- spant-1.15.0/spant/man/scale_mrs_amp.Rd | 40 +- spant-1.15.0/spant/man/scale_spec.Rd | 72 ++--- spant-1.15.0/spant/man/seq_cpmg_ideal.Rd | 50 +-- spant-1.15.0/spant/man/seq_mega_press_ideal.Rd | 84 ++--- spant-1.15.0/spant/man/seq_press_ideal.Rd | 50 +-- spant-1.15.0/spant/man/seq_pulse_acquire.Rd | 42 +- spant-1.15.0/spant/man/seq_pulse_acquire_31p.Rd | 42 +- spant-1.15.0/spant/man/seq_slaser_ideal.Rd | 54 +-- spant-1.15.0/spant/man/seq_spin_echo_ideal.Rd | 46 +-- spant-1.15.0/spant/man/seq_spin_echo_ideal_31p.Rd | 46 +-- spant-1.15.0/spant/man/seq_steam_ideal.Rd | 50 +-- spant-1.15.0/spant/man/set_lw.Rd | 42 +- spant-1.15.0/spant/man/set_mask_xy_mat.Rd | 44 +-- spant-1.15.0/spant/man/shift_basis.Rd | 40 +- spant-1.15.0/spant/man/sim_basis.Rd | 64 ++-- spant-1.15.0/spant/man/sim_basis_1h_brain.Rd | 70 ++-- spant-1.15.0/spant/man/sim_basis_1h_brain_press.Rd | 70 ++-- spant-1.15.0/spant/man/sim_basis_tqn.Rd | 66 ++-- spant-1.15.0/spant/man/sim_brain_1h.Rd | 82 ++--- spant-1.15.0/spant/man/sim_mol.Rd | 80 ++--- spant-1.15.0/spant/man/sim_zero.Rd | 50 +-- spant-1.15.0/spant/man/spec_op.Rd | 64 ++-- spant-1.15.0/spant/man/spin_sys.Rd | 42 +- spant-1.15.0/spant/man/spm_pve2categorical.Rd | 38 +- spant-1.15.0/spant/man/sub_mean_dyns.Rd | 34 +- spant-1.15.0/spant/man/sum_mrs.Rd | 44 +-- spant-1.15.0/spant/man/td_conv_filt.Rd | 42 +- spant-1.15.0/spant/man/varpro_3_para_opts.Rd | 100 +++---- spant-1.15.0/spant/man/varpro_basic_opts.Rd |only spant-1.15.0/spant/man/varpro_opts.Rd | 96 +++--- spant-1.15.0/spant/man/write_basis_tqn.Rd | 46 +-- spant-1.15.0/spant/man/zf.Rd | 52 +-- spant-1.15.0/spant/tests/testthat/abfit_res_coarse.rds |binary spant-1.15.0/spant/tests/testthat/abfit_res_default.rds |binary spant-1.15.0/spant/tests/testthat/abfit_res_fine.rds |binary spant-1.15.0/spant/tests/testthat/abfit_res_no_optim.rds |binary spant-1.15.0/spant/tests/testthat/abfit_sim_mrs_data.rds |binary spant-1.15.0/spant/tests/testthat/abfit_sim_res.rds |binary spant-1.15.0/spant/tests/testthat/test_qm_sim.R | 12 111 files changed, 2479 insertions(+), 2316 deletions(-)
Title: Datasets and Functions for 'Sampling: Design and Analysis, 3rd
Edition'
Description: Includes all the datasets of 'Sampling: Design and Analysis'
(3rd edition by Sharon Lohr) in R format and additional functions for
analyzing and graphing probability samples.
Author: Yan Lu [aut, cre],
Sharon Lohr [aut]
Maintainer: Yan Lu <yanlu@unm.edu>
Diff between SDAResources versions 0.1.0 dated 2021-05-17 and 0.1.1 dated 2021-10-22
DESCRIPTION | 11 + MD5 | 270 ++++++++++++++++++++++++++++++++++++++-------- NAMESPACE | 6 + R/Functions.R | 94 +++++++++++++--- R/agpop.R | 44 +++---- R/agpps.R | 87 +++++++++----- R/agsrs.R | 17 +- R/agstrat.R | 47 ++++---- R/algebra.R | 15 +- R/anthrop.R |only R/anthsrs.R | 16 +- R/anthuneq.R |only R/artifratio.R |only R/asafellow.R |only R/auditresult.R |only R/auditselect.R |only R/azcounties.R |only R/baseball.R |only R/books.R |only R/census1920.R |only R/census2010.R |only R/cherry.R |only R/classes.R | 13 +- R/classpps.R | 18 +-- R/classppsjp.R |only R/college.R | 131 ++++++++++++---------- R/collegerg.R | 176 ++++++++++++++++++++++++++++- R/collshr.R |only R/coots.R | 28 +++- R/counties.R |only R/crimes.R |only R/deadtrees.R | 13 +- R/divorce.R |only R/gini.R |only R/golfsrs.R |only R/gpa.R | 15 +- R/healthjournals.R |only R/htcdf.R |only R/htpop.R |only R/htsrs.R | 20 ++- R/htstrat.R | 10 + R/hunting.R |only R/impute.R | 31 +++-- R/integerwt.R |only R/intellonline.R |only R/intelltel.R |only R/intellwts.R |only R/ipums.R |only R/journal.R |only R/measles.R |only R/mysteries.R |only R/nhanes.R | 119 +++++++++++--------- R/nybight.R |only R/otters.R |only R/ozone.R |only R/pitcount.R |only R/profresp.R |only R/profrespacs.R |only R/radon.R |only R/rectlength.R |only R/rnt.R |only R/sample70.R |only R/santacruz.R | 19 ++- R/schools.R | 39 +++--- R/seals.R |only R/shapespop.R |only R/shorebirds.R |only R/sp500.R |only R/spanish.R |only R/srs30.R |only R/ssc.R |only R/statepop.R |only R/statepps.R |only R/swedishlcs.R |only R/syc.R | 166 +++++++++++++++++++++------- R/teachers.R |only R/teachmi.R |only R/teachnr.R |only R/uneqvar.R |only R/vietnam.R |only R/vius.R |only R/viusca.R |only R/winter.R |only R/wtshare.R |only data/anthrop.RData |only data/anthuneq.RData |only data/artifratio.RData |only data/asafellow.RData |only data/auditresult.RData |only data/auditselect.RData |only data/azcounties.RData |only data/baseball.RData |only data/books.RData |only data/census1920.RData |only data/census2010.RData |only data/cherry.RData |only data/classppsjp.RData |only data/collshr.RData |only data/counties.RData |only data/crimes.RData |only data/divorce.RData |only data/gini.RData |only data/golfsrs.RData |only data/healthjournals.RData |only data/htcdf.RData |only data/htpop.RData |only data/hunting.RData |only data/integerwt.RData |only data/intellonline.RData |only data/intelltel.RData |only data/intellwts.RData |only data/ipums.RData |only data/journal.RData |only data/measles.RData |only data/mysteries.RData |only data/nybight.RData |only data/otters.RData |only data/ozone.RData |only data/pitcount.RData |only data/profresp.RData |only data/profrespacs.RData |only data/radon.RData |only data/rectlength.RData |only data/rnt.RData |only data/sample70.RData |only data/seals.RData |only data/shapespop.RData |only data/shorebirds.RData |only data/sp500.RData |only data/spanish.RData |only data/srs30.RData |only data/ssc.RData |only data/statepop.RData |only data/statepps.RData |only data/swedishlcs.RData |only data/teachers.RData |only data/teachmi.RData |only data/teachnr.RData |only data/uneqvar.RData |only data/vietnam.RData |only data/vius.RData |only data/viusca.RData |only data/winter.RData |only data/wtshare.RData |only man/agpop.Rd | 36 +++--- man/agpps.Rd | 82 +++++++++---- man/agsrs.Rd | 8 - man/agstrat.Rd | 44 ++++--- man/algebra.Rd | 14 +- man/anthrop.Rd |only man/anthsrs.Rd | 14 +- man/anthuneq.Rd |only man/artifratio.Rd |only man/asafellow.Rd |only man/auditresult.Rd |only man/auditselect.Rd |only man/azcounties.Rd |only man/baseball.Rd |only man/books.Rd |only man/captureci.Rd |only man/census1920.Rd |only man/census2010.Rd |only man/cherry.Rd |only man/classes.Rd | 12 +- man/classpps.Rd | 16 +- man/classppsjp.Rd |only man/college.Rd | 130 ++++++++++++---------- man/collegerg.Rd | 175 ++++++++++++++++++++++++++++- man/collshr.Rd |only man/coots.Rd | 25 +++- man/counties.Rd |only man/crimes.Rd |only man/deadtrees.Rd | 10 + man/divorce.Rd |only man/emppmf.Rd |only man/gini.Rd |only man/golfsrs.Rd |only man/gpa.Rd | 13 +- man/healthjournals.Rd |only man/htcdf.Rd |only man/htpop.Rd |only man/htsrs.Rd | 18 ++- man/htstrat.Rd | 8 - man/hunting.Rd |only man/impute.Rd | 29 +++- man/integerwt.Rd |only man/intellonline.Rd |only man/intelltel.Rd |only man/intellwts.Rd |only man/intervals_ex40.Rd | 31 +++-- man/ipums.Rd |only man/journal.Rd |only man/measles.Rd |only man/mysteries.Rd |only man/nhanes.Rd | 103 ++++++++++------- man/nybight.Rd |only man/otters.Rd |only man/ozone.Rd |only man/pitcount.Rd |only man/profresp.Rd |only man/profrespacs.Rd |only man/radon.Rd |only man/rectlength.Rd |only man/rnt.Rd |only man/sample70.Rd |only man/santacruz.Rd | 17 ++ man/schools.Rd | 37 +++--- man/seals.Rd |only man/shapespop.Rd |only man/shorebirds.Rd |only man/sp500.Rd |only man/spanish.Rd |only man/srs30.Rd |only man/ssc.Rd |only man/statepop.Rd |only man/statepps.Rd |only man/swedishlcs.Rd |only man/syc.Rd | 166 ++++++++++++++++++++++------ man/teachers.Rd |only man/teachmi.Rd |only man/teachnr.Rd |only man/uneqvar.Rd |only man/vietnam.Rd |only man/vius.Rd |only man/viusca.Rd |only man/winter.Rd |only man/wtshare.Rd |only 227 files changed, 1724 insertions(+), 669 deletions(-)
Title: Density, Cumulative and Quantile Functions of Quadratic Forms
Description: The computation of quadratic form (QF) distributions is often not trivial and it requires numerical routines. The package contains functions aimed at evaluating the exact distribution of quadratic forms (QFs) and ratios of QFs. In particular, we propose to evaluate density, quantile and distribution functions of positive definite QFs and ratio of independent positive QFs by means of an algorithm based on the numerical inversion of Mellin transforms.
Author: Aldo Gardini [aut, cre],
Fedele Greco [aut],
Carlo Trivisano [aut]
Maintainer: Aldo Gardini <aldo.gardini2@unibo.it>
Diff between QF versions 0.0.4 dated 2021-02-18 and 0.0.6 dated 2021-10-22
QF-0.0.4/QF/cleanup |only QF-0.0.4/QF/configure |only QF-0.0.4/QF/configure.ac |only QF-0.0.4/QF/src/Makevars.in |only QF-0.0.6/QF/DESCRIPTION | 9 ++++----- QF-0.0.6/QF/MD5 | 25 ++++++++++++------------- QF-0.0.6/QF/R/Distributions_depratio.R | 7 +++++-- QF-0.0.6/QF/R/MellinQF.R | 4 ++++ QF-0.0.6/QF/R/MellinQF_ratio.R | 6 ++++++ QF-0.0.6/QF/man/pQF_depratio.Rd | 2 +- QF-0.0.6/QF/src/Makevars |only QF-0.0.6/QF/src/Makevars.ucrt |only QF-0.0.6/QF/src/Makevars.win | 17 +++++++++-------- QF-0.0.6/QF/src/RcppExports.cpp | 5 +++++ QF-0.0.6/QF/src/get_mellin_QF.cpp | 6 +++++- QF-0.0.6/QF/src/get_mellin_QF_ratio.cpp | 2 +- QF-0.0.6/QF/tools |only 17 files changed, 52 insertions(+), 31 deletions(-)
Title: Probabilistic Supervised Learning for 'mlr3'
Description: Provides extensions for probabilistic supervised learning for
'mlr3'. This includes extending the regression task to probabilistic
and interval regression, adding a survival task, and other specialized
models, predictions, and measures.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut],
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Nurul Ain Toha [ctb],
Andreas Bender [ctb] (<https://orcid.org/0000-0001-5628-8611>)
Maintainer: Raphael Sonabend <raphaelsonabend@gmail.com>
Diff between mlr3proba versions 0.4.1 dated 2021-09-07 and 0.4.2 dated 2021-10-22
DESCRIPTION | 16 MD5 | 164 ++++----- NEWS.md | 4 R/LearnerDensHistogram.R | 2 R/LearnerDensKDE.R | 6 R/LearnerSurv.R | 4 R/LearnerSurvCoxPH.R | 6 R/LearnerSurvKaplan.R | 2 R/MeasureSurv.R | 2 R/MeasureSurvAUC.R | 2 R/MeasureSurvCalibrationAlpha.R | 4 R/MeasureSurvCindex.R | 26 - R/MeasureSurvDCalibration.R | 6 R/MeasureSurvGraf.R | 6 R/MeasureSurvIntLogloss.R | 6 R/MeasureSurvIntegrated.R | 4 R/MeasureSurvLogloss.R | 2 R/MeasureSurvSchmid.R | 6 R/PipeOpCrankCompositor.R | 10 R/PipeOpDistrCompositor.R | 16 R/PipeOpPredRegrSurv.R | 50 +- R/PipeOpPredSurvRegr.R | 25 - R/PipeOpPredTransformer.R | 13 R/PipeOpProbregrCompositor.R | 54 +-- R/PipeOpSurvAvg.R | 35 +- R/PipeOpTaskRegrSurv.R | 37 +- R/PipeOpTaskSurvRegr.R | 156 ++++----- R/PipeOpTaskTransformer.R | 15 R/PipeOpTransformer.R | 7 R/PredictionDataSurv.R | 11 R/PredictionDens.R | 2 R/PredictionSurv.R | 8 R/TaskDens_X.R | 4 R/TaskGeneratorSimdens.R | 2 R/TaskGeneratorSimsurv.R | 8 R/TaskSurv.R | 1 R/TaskSurv_X.R | 8 R/bibentries.R | 110 +++--- R/cindex.R | 6 R/helpers.R | 2 R/histogram.R | 4 R/integrated_scores.R | 18 - R/pecs.R | 80 ++-- R/pipelines.R | 255 +++++++-------- R/surv_measures.R | 4 R/surv_return.R | 6 R/zzz.R | 16 README.md | 1 build/partial.rdb |binary man/MeasureSurvIntegrated.Rd | 2 man/TaskSurv.Rd | 1 man/mlr3proba-package.Rd | 8 man/mlr_graphs_crankcompositor.Rd | 20 - man/mlr_graphs_distrcompositor.Rd | 24 - man/mlr_graphs_probregrcompositor.Rd | 40 +- man/mlr_graphs_survaverager.Rd | 22 - man/mlr_graphs_survbagging.Rd | 22 - man/mlr_graphs_survtoregr.Rd | 66 +-- man/mlr_measures_dens.logloss.Rd | 2 man/mlr_measures_surv.intlogloss.Rd | 2 man/mlr_measures_surv.logloss.Rd | 7 man/mlr_pipeops_compose_distr.Rd | 14 man/mlr_pipeops_compose_probregr.Rd | 34 +- man/mlr_pipeops_survavg.Rd | 14 man/mlr_pipeops_trafopred_regrsurv.Rd | 34 +- man/mlr_pipeops_trafopred_survregr.Rd | 18 - man/mlr_pipeops_trafotask_regrsurv.Rd | 28 - man/mlr_pipeops_trafotask_survregr.Rd | 94 ++--- man/mlr_task_generators_simsurv.Rd | 6 man/pecs.Rd | 38 +- tests/testthat/helper.R | 6 tests/testthat/helper_pipeops.R | 15 tests/testthat/test_PredictionSurv.R | 2 tests/testthat/test_TaskSurv.R | 6 tests/testthat/test_mlr_learners_surv_coxph.R | 2 tests/testthat/test_mlr_measures.R | 22 - tests/testthat/test_mlr_measures_MeasureSurvIntegrated.R | 6 tests/testthat/test_pipelines.R | 8 tests/testthat/test_pipeop_crankcompositor.R | 26 - tests/testthat/test_pipeop_distrcompositor.R | 6 tests/testthat/test_pipeop_probregrcompositor.R | 4 tests/testthat/test_pipeop_survavg.R | 37 +- tests/testthat/test_register.R | 2 83 files changed, 944 insertions(+), 926 deletions(-)
Title: A 'ggplot2' Implement of Venn Diagram
Description: Easy-to-use functions to generate 2-7 sets Venn plot in publication quality.
'ggVennDiagram' plot Venn using well-defined geometry dataset and 'ggplot2'. The shapes of 2-4 sets
Venn use circles and ellipses, while the shapes of 4-7 sets Venn use irregular polygons (4 has both forms), which
are developed and imported from another package 'venn', authored by Adrian Dusa. We provided internal functions to
integrate shape data with user provided sets data, and calculated the geometry of every regions/intersections
of them, then separately plot Venn in three components: set edges, set labels, and regions.
From version 1.0, it is possible to customize these components as you demand in ordinary 'ggplot2' grammar.
Author: Chun-Hui Gao [aut, cre] (<https://orcid.org/0000-0002-1445-7939>),
Guangchuang Yu [ctb] (<https://orcid.org/0000-0002-6485-8781>),
Adrian Dusa [ctb]
Maintainer: Chun-Hui Gao <gaospecial@gmail.com>
Diff between ggVennDiagram versions 1.1.4 dated 2021-07-07 and 1.2.0 dated 2021-10-22
DESCRIPTION | 6 +-- MD5 | 22 ++++++------ NEWS.md | 6 +++ README.md | 18 ++++++++-- inst/doc/fully-customed.R | 26 ++++++++++++++ inst/doc/fully-customed.Rmd | 33 ++++++++++++++++++ inst/doc/fully-customed.html | 40 +++++++++++++++++++++++ inst/doc/using-ggVennDiagram.html | 6 +-- inst/doc/venn-plot-with-more-than-four-sets.Rmd | 2 - inst/doc/venn-plot-with-more-than-four-sets.html | 2 - vignettes/fully-customed.Rmd | 33 ++++++++++++++++++ vignettes/venn-plot-with-more-than-four-sets.Rmd | 2 - 12 files changed, 173 insertions(+), 23 deletions(-)
Title: Analysis of Geostatistical Data using Bayes and Empirical Bayes
Methods
Description: Functions to fit geostatistical data. The data can be
continuous, binary or count data and the models implemented are
flexible. Conjugate priors are assumed on some parameters while
inference on the other parameters can be done through a full
Bayesian analysis of by empirical Bayes methods.
Author: Evangelos Evangelou <e.evangelou@maths.bath.ac.uk>, Vivekananda
Roy <vroy@iastate.edu>
Maintainer: Evangelos Evangelou <e.evangelou@maths.bath.ac.uk>
Diff between geoBayes versions 0.6.3 dated 2019-12-02 and 0.7.0 dated 2021-10-22
DESCRIPTION | 12 +++--- MD5 | 74 +++++++++++++++++++++--------------------- NAMESPACE | 3 + NEWS | 2 + R/bf.R | 10 +++-- R/bfse.R | 6 ++- R/calcbf.R | 20 ++++++----- R/geobayes-correlation.R | 1 R/mcsp2.R | 56 ++++++++++++++++++++++++++------ R/mcsp_mala.R | 76 ++++++++++++++++++++++++++++++++------------ R/seeb.R | 3 + R/simulate.R | 39 +++++++++++++++++----- R/skelpnts.R | 50 ++++++++++++++++++++++------ R/sploglik.R | 20 +++++++---- man/alik_inla.Rd | 3 + man/alik_optim.Rd | 3 + man/geoBayes_correlation.Rd | 4 +- man/geoBayes_models.Rd | 4 +- man/mcsglmm.Rd | 3 + man/mcsglmm_mala.Rd | 3 + man/mcstrga.Rd | 3 + man/mcstrga_mala.Rd | 3 + man/rhizoctonia.Rd | 4 +- man/rsglmm.Rd | 5 ++ src/Makevars | 2 - src/betaprior.f90 | 16 +++++---- src/bfse.f90 | 54 ++++++++++++++++--------------- src/bfsp2.f90 | 26 +++++++-------- src/calcb2.f90 | 62 +++++++++++++++++------------------ src/calcbd.f90 | 28 +++++++++------- src/llik.f90 | 48 +++++++++++++++------------ src/llikderiv.f90 | 6 +-- src/llikmc.f90 | 24 ++++++------- src/mcmcfcns.f90 | 20 ++++++----- src/mcsp2.f90 | 56 +++++++++++++++++--------------- src/mcsp_mala.f90 | 41 ++++++++++++----------- src/seeb.f90 | 40 +++++++++++------------ src/skelpnts.f90 | 30 ++++++++--------- 38 files changed, 525 insertions(+), 335 deletions(-)
Title: UCA Rcmdr Plug-in
Description: Some extensions to Rcmdr (R Commander), randomness test,
variance test for one normal sample and predictions using active model,
made by R-UCA project and used in teaching statistics at University of Cadiz (UCA).
Author: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between RcmdrPlugin.UCA versions 4.4-3 dated 2021-04-02 and 4.5-1 dated 2021-10-22
ChangeLog | 3 DESCRIPTION | 12 MD5 | 34 - NAMESPACE | 19 R/qualitycontrol.R | 601 +++++++++++++++------------- build/vignette.rds |binary inst/doc/additions.html | 4 inst/doc/adiciones.html | 4 inst/etc/menus.txt | 25 - inst/po/es/LC_MESSAGES/R-RcmdrPlugin.UCA.mo |binary man/RcmdrPlugin.UCA-internal.Rd | 16 man/RcmdrPlugin.UCA-package.Rd | 4 man/RcmdrPlugin.UCA.es-package.Rd | 4 man/qccMenu.Rd |only man/qccMenu.es.Rd |only po/R-RcmdrPlugin.UCA-es.mo |binary po/R-RcmdrPlugin.UCA-es.po | 446 ++++++++++++++------ po/R-RcmdrPlugin.UCA.mo |binary po/R-RcmdrPlugin.UCA.pot | 366 ++++++++++++----- 19 files changed, 972 insertions(+), 566 deletions(-)
More information about RcmdrPlugin.UCA at CRAN
Permanent link
Title: Multivariate Difference Between Two Groups
Description: Estimation of multivariate differences between two groups (e.g., multivariate sex differences) with regularized regression methods and predictive approach. See Lönnqvist & Ilmarinen (2021) <doi:10.1007/s11109-021-09681-2> and Ilmarinen et al. (2021) <doi:10.31234/osf.io/j59bs>.
Author: Ville-Juhani Ilmarinen [aut, cre]
(<https://orcid.org/0000-0001-9493-379X>)
Maintainer: Ville-Juhani Ilmarinen <vj.ilmarinen@gmail.com>
Diff between multid versions 0.1.0 dated 2021-09-20 and 0.2.0 dated 2021-10-22
DESCRIPTION | 11 MD5 | 32 +- NAMESPACE | 1 NEWS.md | 10 R/D_regularized.R | 26 +- R/D_regularized_fold.R | 28 +- R/D_regularized_fold_out.R | 109 ++++++++- R/D_regularized_out.R | 83 ++++++- R/colwise_pool.R | 12 - R/d_pooled_sd.R | 17 + R/pcc.R |only README.md | 469 ++++++++++++++++++++++++++++++++++-------- man/D_regularized.Rd | 17 + man/D_regularized_fold_out.Rd | 18 + man/D_regularized_out.Rd | 18 + man/d_pooled_sd.Rd | 13 - man/figures |only man/pcc.Rd |only 18 files changed, 717 insertions(+), 147 deletions(-)
Title: Open Source Geometry Engine ('GEOS') R API
Description: Provides an R API to the Open Source Geometry Engine
('GEOS') library (<https://trac.osgeo.org/geos/>) and a vector format
with which to efficiently store 'GEOS' geometries. High-performance functions
to extract information from, calculate relationships between, and
transform geometries are provided. Finally, facilities to import
and export geometry vectors to other spatial formats are provided.
Author: Dewey Dunnington [aut, cre] (<https://orcid.org/0000-0002-9415-4582>),
Edzer Pebesma [aut] (<https://orcid.org/0000-0001-8049-7069>)
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between geos versions 0.1.1 dated 2021-05-18 and 0.1.2 dated 2021-10-22
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ README.md | 18 ++++++++---------- man/figures/README-ex-plot-1.png |binary man/geos-package.Rd | 7 +------ tests/testthat/Rplots.pdf |binary tests/testthat/test-geos-binary-atomic.R | 8 +++++++- tests/testthat/test-geos-unary-geometry.R | 16 ++++++++++------ 9 files changed, 42 insertions(+), 35 deletions(-)
Title: Access, Retrieve, and Work with Canadian Census Data and
Geography
Description: Integrated, convenient, and uniform access to Canadian
Census data and geography retrieved using the 'CensusMapper' API. This package produces analysis-ready
tidy data frames and spatial data in multiple formats, as well as convenience functions
for working with Census variables, variable hierarchies, and region selection. API
keys are freely available with free registration at <https://censusmapper.ca/api>.
Census data and boundary geometries are reproduced and distributed on an "as
is" basis with the permission of Statistics Canada (Statistics Canada 2001; 2006;
2011; 2016).
Author: Jens von Bergmann [aut] (API creator and maintainer),
Dmitry Shkolnik [aut, cre] (Package maintainer, responsible for
correspondence),
Aaron Jacobs [aut]
Maintainer: Dmitry Shkolnik <shkolnikd@gmail.com>
Diff between cancensus versions 0.4.6 dated 2021-10-21 and 0.4.7 dated 2021-10-22
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/cancensus.R | 9 ++++++++- R/census_regions.R | 4 ++++ inst/doc/Making_maps_with_cancensus.html | 8 ++++---- man/dataset_attribution.Rd | 3 +++ man/label_vectors.Rd | 1 + man/list_census_datasets.Rd | 3 +++ man/list_census_regions.Rd | 4 ++++ 9 files changed, 38 insertions(+), 16 deletions(-)
Title: See a Forest for the Trees
Description: Get insight into a forest of classification trees, by calculating similarities between the trees, and subsequently clustering them. Each cluster is represented by it's most central cluster member. The package implements the methodology described in Sies & Van Mechelen (2020) <doi:10.1007/s00357-019-09350-4>.
Author: Aniek Sies [aut, cre],
Iven Van Mechelen [ths]
Maintainer: Aniek Sies <aniek.sies@kuleuven.be>
Diff between C443 versions 3.2.1 dated 2021-06-27 and 3.2.2 dated 2021-10-22
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/clusterforest.R | 10 +++++----- 3 files changed, 11 insertions(+), 11 deletions(-)
Title: Non-Parametric Bayesian Analyses of Animal Movement
Description: Methods for assessing animal movement from telemetry and biologging
data using non-parametric Bayesian methods. This includes features for pre-
processing and analysis of data, as well as the visualization of results
from the models. This framework does not rely on standard parametric density
functions, which provides flexibility during model fitting. Further details
regarding part of this framework can be found in Cullen et al. (2021) <doi:10.1101/2020.11.05.369702>.
Author: Joshua Cullen [aut, cre, cph] (<https://orcid.org/0000-0002-6935-9340>),
Denis Valle [aut, cph]
Maintainer: Joshua Cullen <joshcullen10@gmail.com>
Diff between bayesmove versions 0.2.0 dated 2021-04-26 and 0.2.1 dated 2021-10-22
DESCRIPTION | 17 - MD5 | 31 +- NAMESPACE | 1 NEWS.md | 6 R/RcppExports.R | 13 + R/segmentation_gibbs_functions.R | 32 -- R/segmentation_gibbs_sampler.R | 30 +- R/segmentation_helper_functions.R | 47 ++- R/shinyapp.R | 477 +++++++++++++++++++++----------------- README.md | 49 ++- inst/CITATION | 6 inst/WORDLIST | 4 man/shiny_tracks.Rd | 11 man/summarize1.Rd |only man/traceplot.Rd | 39 ++- src/LDA_aux1.cpp | 26 ++ src/RcppExports.cpp | 16 + 17 files changed, 487 insertions(+), 318 deletions(-)
Title: Partition/Decomposition of Breeding Values by Paths of
Information
Description: A software that implements a method for partitioning genetic trends to
quantify the sources of genetic gain in breeding programmes.
The partitioning method is described in Garcia-Cortes et al.
(2008) <doi:10.1017/S175173110800205X>. The package includes the
main function AlphaPart for partitioning breeding values and auxiliary
functions for manipulating data and summarizing, visualizing, and saving
results.
Author: Gregor Gorjanc [aut, cre] (<https://orcid.org/0000-0001-8008-2787>),
Jana Obsteter [aut] (<https://orcid.org/0000-0003-1511-3916>),
Thiago de Paula Oliveira [aut]
(<https://orcid.org/0000-0002-4555-2584>)
Maintainer: Gregor Gorjanc <highlander.research.lab@gmail.com>
Diff between AlphaPart versions 0.8.3 dated 2021-09-28 and 0.8.4 dated 2021-10-22
AlphaPart-0.8.3/AlphaPart/tests |only AlphaPart-0.8.4/AlphaPart/DESCRIPTION | 12 ++++---- AlphaPart-0.8.4/AlphaPart/MD5 | 19 ++----------- AlphaPart-0.8.4/AlphaPart/build/partial.rdb |binary AlphaPart-0.8.4/AlphaPart/inst/doc/alphapart-vignette.html | 4 +- 5 files changed, 11 insertions(+), 24 deletions(-)
Title: Header-Only C++ Mathematical Optimization Library for
'Armadillo'
Description: 'Ensmallen' is a templated C++ mathematical optimization library
(by the 'MLPACK' team) that provides a simple set of abstractions for writing an
objective function to optimize. Provided within are various standard and
cutting-edge optimizers that include full-batch gradient descent techniques,
small-batch techniques, gradient-free optimizers, and constrained optimization.
The 'RcppEnsmallen' package includes the header files from the 'Ensmallen' library
and pairs the appropriate header files from 'armadillo' through the
'RcppArmadillo' package. Therefore, users do not need to install 'Ensmallen' nor
'Armadillo' to use 'RcppEnsmallen'. Note that 'Ensmallen' is licensed under
3-Clause BSD, 'Armadillo' starting from 7.800.0 is licensed under Apache License 2,
'RcppArmadillo' (the 'Rcpp' bindings/bridge to 'Armadillo') is licensed under
the GNU GPL version 2 or later. Thus, 'RcppEnsmallen' is also licensed under
similar terms. Note that 'Ensmallen' requires a compiler that supports
'C++11' and 'Armadillo' 9.800 or later.
Author: James Joseph Balamuta [aut, cre, cph]
(<https://orcid.org/0000-0003-2826-8458>),
Dirk Eddelbuettel [aut, cph] (<https://orcid.org/0000-0001-6419-907X>)
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between RcppEnsmallen versions 0.2.17.0.1 dated 2021-07-06 and 0.2.18.0.1 dated 2021-10-22
ChangeLog | 17 +++ DESCRIPTION | 10 - MD5 | 26 ++-- NEWS.md | 18 +++ build/vignette.rds |binary inst/doc/using-rcppensmallen.Rmd | 8 - inst/doc/using-rcppensmallen.html | 28 ++--- inst/include/ensmallen.hpp | 2 inst/include/ensmallen_bits/callbacks/early_stop_at_min_loss.hpp | 4 inst/include/ensmallen_bits/callbacks/grad_clip_by_norm.hpp |only inst/include/ensmallen_bits/callbacks/grad_clip_by_value.hpp |only inst/include/ensmallen_bits/callbacks/traits.hpp | 56 ++++++++-- inst/include/ensmallen_bits/ens_version.hpp | 8 - src/RcppExports.cpp | 5 vignettes/using-rcppensmallen.Rmd | 8 - 15 files changed, 139 insertions(+), 51 deletions(-)
Title: Growth Charts via Smooth Regression Quantiles with Automatic
Smoothness Estimation and Additive Terms
Description: Fits non-crossing regression quantiles as a function of linear covariates and multiple smooth terms, including varying coefficients, via B-splines with L1-norm difference penalties.
The smoothing parameters are estimated as part of the model fitting, see Muggeo and others (2021) <doi:10.1177/1471082X20929802>. Monotonicity and concavity
constraints on the fitted curves are allowed, see Muggeo and others (2013) <doi:10.1007/s10651-012-0232-1> and also <doi:10.13140/RG.2.2.12924.85122> for some code examples.
Author: Vito M. R. Muggeo [aut, cre] (<https://orcid.org/0000-0002-3386-4054>)
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between quantregGrowth versions 1.3-0 dated 2021-06-11 and 1.3-1 dated 2021-10-22
DESCRIPTION | 13 ++-- MD5 | 42 +++++++-------- NEWS | 20 +++++-- R/gcrq.r | 63 +++++++++++++++------- R/logLik.gcrq.R | 11 ++- R/ncross.rq.fitXB.r | 35 ++++++++---- R/plot.gcrq.R | 8 ++ R/predict.gcrq.R | 44 +++++++++++---- R/print.gcrq.R | 3 - R/ps.R | 16 ++--- R/summary.gcrq.R | 117 +++++++++++++++++++++--------------------- build/vignette.rds |binary inst/doc/quantregGrowth.R | 2 inst/doc/quantregGrowth.Rmd | 21 +++---- inst/doc/quantregGrowth.html | 23 ++++---- man/charts.Rd | 4 - man/gcrq.Rd | 21 ++++--- man/logLik.gcrq.Rd | 8 ++ man/plot.gcrq.Rd | 4 - man/ps.Rd | 20 +++---- man/quantregGrowth-package.Rd | 10 +-- vignettes/quantregGrowth.Rmd | 21 +++---- 22 files changed, 299 insertions(+), 207 deletions(-)
More information about quantregGrowth at CRAN
Permanent link
Title: A Framework for Comparing the Performance of MCMC Samplers
Description: A framework for running sets of MCMC samplers on sets of distributions with a variety of tuning parameters, along with plotting functions to visualize the results of those simulations.
Author: Madeleine Thompson, except dchud.f and dchdd.f, which were written by G. W. Stewart.
Maintainer: Madeleine Thompson <madeleineth@gmail.com>
Diff between SamplerCompare versions 1.3.1 dated 2021-09-28 and 1.3.2 dated 2021-10-22
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++-------- build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 6 +++--- inst/doc/glue.pdf |binary inst/doc/sc-intro.pdf |binary man/compare.samplers.Rd | 2 +- man/comparison.plot.Rd | 2 +- man/simulation.result.Rd | 2 +- 10 files changed, 19 insertions(+), 18 deletions(-)
More information about SamplerCompare at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-24 0.1.1
2016-11-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-14 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-30 0.13.1
Title: R/Package Version Check
Description: Check latest release version of R and R package (both in 'CRAN', 'Bioconductor' or 'Github').
Author: Guangchuang Yu [aut, cre],
Chun-hui Gao [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between rvcheck versions 0.2.0 dated 2021-09-14 and 0.2.1 dated 2021-10-22
DESCRIPTION | 9 +++++---- MD5 | 6 ++++-- NAMESPACE | 7 +++++++ R/reexports.R |only man/reexports.Rd |only 5 files changed, 16 insertions(+), 6 deletions(-)
Title: R Interface to the 'PostgreSQL' Database System
Description: Database interface and 'PostgreSQL' driver for 'R'.
This package provides a Database Interface 'DBI' compliant
driver for 'R' to access 'PostgreSQL' database systems.
In order to build and install this package from source, 'PostgreSQL'
itself must be present your system to provide 'PostgreSQL' functionality
via its libraries and header files. These files are provided as
'postgresql-devel' package under some Linux distributions.
On 'macOS' and 'Microsoft Windows' system the attached 'libpq' library source will be used.
Author: Joe Conway, Dirk Eddelbuettel, Tomoaki Nishiyama, Sameer Kumar Prayaga (during 2008), Neil Tiffin
Maintainer: Tomoaki Nishiyama <tomoakin@staff.kanazawa-u.ac.jp>
Diff between RPostgreSQL versions 0.7-2 dated 2021-10-06 and 0.7-3 dated 2021-10-22
DESCRIPTION | 8 +++--- MD5 | 6 ++-- configure | 72 +++++++++-------------------------------------------------- configure.ac | 17 +++++++++++-- 4 files changed, 32 insertions(+), 71 deletions(-)
Title: Magnetic Resonance Binning, Integration and Normalization
Description: Nuclear Magnetic Resonance is widely used in Life Science
research. The package (<doi:10.1021/acs.jproteome.0c00684>) converts 1D
or 2D data into a matrix of values suitable for further data analysis and
performs basic processing steps in a reproducible way. Negative values, a
common issue in such data, are replaced by positive values. All used
parameters are stored in a readable text file and can be restored from that
file to enable exact reproduction of the data at a later time.
Author: Matthias Klein [aut, cre] (<https://orcid.org/0000-0001-7455-5381>)
Maintainer: Matthias Klein <klein.663@osu.edu>
Diff between mrbin versions 1.6.0 dated 2021-08-23 and 1.6.1 dated 2021-10-22
DESCRIPTION | 6 +- MD5 | 10 ++-- NEWS.md | 6 ++ R/mrbin.R | 119 ++++++++++++++++++++++++++++++++++++----------------- inst/doc/mrbin.pdf |binary man/addToPlot.Rd | 5 +- 6 files changed, 99 insertions(+), 47 deletions(-)
Title: Miscellaneous, Analytic R Kernels
Description: Miscellaneous functions and wrappers for development in other
packages created, maintained by Jordan Mark Barbone.
Author: Jordan Mark Barbone [aut, cph, cre] (0000-0001-9788-3628)
Maintainer: Jordan Mark Barbone <jmbarbone@gmail.com>
Diff between mark versions 0.3.0 dated 2021-09-18 and 0.4.0 dated 2021-10-22
DESCRIPTION | 8 - MD5 | 153 +++++++++++++++++++--------------- NAMESPACE | 8 + NEWS.md | 31 ++++++ R/base-conversion.R | 2 R/counts.R | 8 - R/dataframes.R | 29 +++++- R/description.R | 29 ++++-- R/environments.R | 40 +++----- R/fact.R | 24 +++-- R/fct_expand_seq.R | 2 R/flip.R | 3 R/handlers.R | 3 R/import.R | 2 R/insert.R |only R/labels.R | 26 ++--- R/lines-of-code.R | 6 - R/logic.R | 33 +++++-- R/match.R | 2 R/na-assignment.R | 4 R/nas.R | 33 ++++++- R/note.R | 13 -- R/percent_rank.R |only R/plot.R | 6 - R/pseudo-id.R | 15 ++- R/strings.R | 16 --- R/struct.R | 25 +++-- R/system-file.R | 2 R/unlist.R | 5 - R/utils.R | 65 +++++--------- README.md | 2 man/insert.Rd |only man/list2df.Rd | 7 + man/logic_ext.Rd | 12 ++ man/ls_ext.Rd | 9 +- man/omit_na.Rd |only man/percentile_rank.Rd |only man/pseudo_id.Rd | 12 +- man/quick_df.Rd | 13 ++ man/struct.Rd | 25 +++-- tests/testthat/Rplots.pdf |only tests/testthat/_snaps/handlers.md |only tests/testthat/_snaps/note.md | 33 ++++++- tests/testthat/files |only tests/testthat/scripts/lines |only tests/testthat/test-apply.R | 25 +++++ tests/testthat/test-array.R | 5 + tests/testthat/test-base-conversion.R | 23 +++++ tests/testthat/test-between-more.R | 2 tests/testthat/test-boolean.R | 74 ++++++++++++++++ tests/testthat/test-char2fact.R | 4 tests/testthat/test-clipboard.R | 8 + tests/testthat/test-dataframes.R | 17 +++ tests/testthat/test-dates.R | 13 ++ tests/testthat/test-depth.R | 1 tests/testthat/test-description.R |only tests/testthat/test-detail.R |only tests/testthat/test-diff-time.R | 13 ++ tests/testthat/test-environments.R |only tests/testthat/test-expand.R | 15 ++- tests/testthat/test-fact.R | 36 +++++++- tests/testthat/test-fct-expand-seq.R | 7 + tests/testthat/test-flip.R | 15 +++ tests/testthat/test-funs.R | 5 + tests/testthat/test-handlers.R | 16 +++ tests/testthat/test-identical.R |only tests/testthat/test-import.R |only tests/testthat/test-insert.R |only tests/testthat/test-labels.R | 23 +++++ tests/testthat/test-lines-of-code.R |only tests/testthat/test-logic.R | 13 ++ tests/testthat/test-map.R |only tests/testthat/test-match-arg.R | 17 +++ tests/testthat/test-match.R |only tests/testthat/test-na-assignments.R | 18 ++++ tests/testthat/test-namespace.R |only tests/testthat/test-nas.R | 17 +++ tests/testthat/test-note.R | 33 ++++--- tests/testthat/test-options.R |only tests/testthat/test-paste.R | 10 +- tests/testthat/test-percentile_rank.R |only tests/testthat/test-plot.R |only tests/testthat/test-round-by.R | 16 ++- tests/testthat/test-stats.R | 2 tests/testthat/test-struct.R | 11 ++ tests/testthat/test-system-file.R |only tests/testthat/test-time-report.R |only tests/testthat/test-unlist.R | 11 ++ tests/testthat/test-utils.R | 29 ++++++ 89 files changed, 877 insertions(+), 308 deletions(-)