Title: Splitting Conic Solver
Description: Solves convex cone programs via operator splitting. Can solve:
linear programs ('LPs'), second-order cone programs ('SOCPs'), semidefinite programs
('SDPs'), exponential cone programs ('ECPs'), and power cone programs ('PCPs'), or
problems with any combination of those cones. 'SCS' uses 'AMD' (a set of routines for permuting sparse matrices prior to factorization) and 'LDL' (a sparse 'LDL' factorization and solve package) from 'SuiteSparse' (<https://people.engr.tamu.edu/davis/suitesparse.html>).
Author: Florian Schwendinger [aut, cre],
Brendan O'Donoghue [aut, cph],
Balasubramanian Narasimhan [aut],
Timothy A. Davis [cph],
Patrick R. Amestory [cph],
Iain S. Duff [cph]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between scs versions 1.3-2 dated 2019-11-19 and 3.0-0 dated 2021-11-07
scs-1.3-2/scs/src/scs/linsys/amatrix.h |only scs-1.3-2/scs/src/scs/linsys/common.c |only scs-1.3-2/scs/src/scs/linsys/common.h |only scs-1.3-2/scs/src/scs/linsys/direct |only scs-1.3-2/scs/src/scs/test/data |only scs-1.3-2/scs/src/scs/test/problems/small_random_socp.h |only scs-1.3-2/scs/src/scs/test/run_tests |only scs-1.3-2/scs/src/scs_mods/glbopts.h |only scs-3.0-0/scs/DESCRIPTION | 22 scs-3.0-0/scs/MD5 | 241 +- scs-3.0-0/scs/NEWS.md | 2 scs-3.0-0/scs/R/scs.R | 65 scs-3.0-0/scs/R/sparse.R | 33 scs-3.0-0/scs/README.md | 32 scs-3.0-0/scs/cleanup | 2 scs-3.0-0/scs/inst/check.R |only scs-3.0-0/scs/man/scs.Rd | 17 scs-3.0-0/scs/man/scs_control.Rd | 51 scs-3.0-0/scs/src/Makevars | 3 scs-3.0-0/scs/src/Makevars.win | 3 scs-3.0-0/scs/src/scs/CMakeLists.txt |only scs-3.0-0/scs/src/scs/Makefile | 84 scs-3.0-0/scs/src/scs/cmake |only scs-3.0-0/scs/src/scs/docs |only scs-3.0-0/scs/src/scs/include/aa.h | 90 scs-3.0-0/scs/src/scs/include/cones.h | 34 scs-3.0-0/scs/src/scs/include/glbopts.h | 144 - scs-3.0-0/scs/src/scs/include/linalg.h | 6 scs-3.0-0/scs/src/scs/include/linsys.h | 110 - scs-3.0-0/scs/src/scs/include/normalize.h | 6 scs-3.0-0/scs/src/scs/include/rw.h | 10 scs-3.0-0/scs/src/scs/include/scs.h | 427 +++- scs-3.0-0/scs/src/scs/include/util.h | 18 scs-3.0-0/scs/src/scs/linsys/cpu |only scs-3.0-0/scs/src/scs/linsys/csparse.c |only scs-3.0-0/scs/src/scs/linsys/csparse.h |only scs-3.0-0/scs/src/scs/linsys/external |only scs-3.0-0/scs/src/scs/linsys/scs_matrix.c |only scs-3.0-0/scs/src/scs/linsys/scs_matrix.h |only scs-3.0-0/scs/src/scs/scs.mk | 50 scs-3.0-0/scs/src/scs/src/aa.c | 552 ++++- scs-3.0-0/scs/src/scs/src/cones.c | 869 ++++---- scs-3.0-0/scs/src/scs/src/ctrlc.c | 20 scs-3.0-0/scs/src/scs/src/linalg.c | 112 - scs-3.0-0/scs/src/scs/src/normalize.c | 90 scs-3.0-0/scs/src/scs/src/rw.c | 231 +- scs-3.0-0/scs/src/scs/src/scs.c | 1468 ++++++++------- scs-3.0-0/scs/src/scs/src/scs_version.c | 10 scs-3.0-0/scs/src/scs/src/util.c | 178 - scs-3.0-0/scs/src/scs/test/minunit.h | 30 scs-3.0-0/scs/src/scs/test/problem_utils.h | 207 +- scs-3.0-0/scs/src/scs/test/problems/degenerate.h |only scs-3.0-0/scs/src/scs/test/problems/hs21_tiny_qp.h |only scs-3.0-0/scs/src/scs/test/problems/hs21_tiny_qp_rw.h |only scs-3.0-0/scs/src/scs/test/problems/infeasible_tiny_qp.h |only scs-3.0-0/scs/src/scs/test/problems/qafiro_tiny_qp.h |only scs-3.0-0/scs/src/scs/test/problems/random_prob |only scs-3.0-0/scs/src/scs/test/problems/random_prob.h |only scs-3.0-0/scs/src/scs/test/problems/rob_gauss_cov_est.h | 219 +- scs-3.0-0/scs/src/scs/test/problems/small_lp.h | 27 scs-3.0-0/scs/src/scs/test/problems/small_qp.h |only scs-3.0-0/scs/src/scs/test/problems/test_validation.h |only scs-3.0-0/scs/src/scs/test/problems/unbounded_tiny_qp.h |only scs-3.0-0/scs/src/scs/test/random_socp_prob.c | 107 - scs-3.0-0/scs/src/scs/test/rng.h |only scs-3.0-0/scs/src/scs/test/run_from_file.c | 55 scs-3.0-0/scs/src/scs/test/run_tests.c | 22 scs-3.0-0/scs/src/scs_mods/README.md |only scs-3.0-0/scs/src/scs_mods/rw.c | 386 ++- scs-3.0-0/scs/src/scs_mods/scs.mk | 47 scs-3.0-0/scs/src/scsr.c | 215 +- scs-3.0-0/scs/tests/testthat.R | 1 scs-3.0-0/scs/tests/testthat/problem_results |only scs-3.0-0/scs/tests/testthat/test_example.R | 23 scs-3.0-0/scs/tests/testthat/test_problems.R |only scs-3.0-0/scs/tests/testthat/test_psd.R | 38 scs-3.0-0/scs/tests/testthat/test_random_lp.R | 26 scs-3.0-0/scs/tests/testthat/test_socp.R | 21 scs-3.0-0/scs/tests/testthat/test_sparse_utils.R |only scs-3.0-0/scs/tests/testthat/test_tiny.R | 11 80 files changed, 4058 insertions(+), 2357 deletions(-)
Title: Helper Functions for Regression Analysis
Description: A set of functions used to automate commonly used methods in
regression analysis. This includes plotting interactions, and calculating
simple slopes, standardized coefficients, regions of significance
(Johnson & Neyman, 1936; cf. Spiller et al., 2012), etc. See the reghelper
documentation for more information, documentation, and examples.
Author: Jeffrey Hughes [aut, cre],
David Beiner [aut]
Maintainer: Jeffrey Hughes <jeff.hughes@gmail.com>
Diff between reghelper versions 1.0.2 dated 2021-02-20 and 1.1.0 dated 2021-11-07
reghelper-1.0.2/reghelper/man/print.simple_slopes_lme4.Rd |only reghelper-1.1.0/reghelper/DESCRIPTION | 24 - reghelper-1.1.0/reghelper/MD5 | 13 reghelper-1.1.0/reghelper/NAMESPACE | 3 reghelper-1.1.0/reghelper/NEWS.md | 16 reghelper-1.1.0/reghelper/R/simple_slopes.R | 226 ++++++++------ reghelper-1.1.0/reghelper/README.md | 20 - reghelper-1.1.0/reghelper/man/simple_slopes.Rd | 31 + 8 files changed, 205 insertions(+), 128 deletions(-)
Title: Compute, Handle and Plot Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise
incidence from dated events for a defined time interval. Dates can be
provided in various standard formats. The class 'incidence2' is used to store
computed incidence and can be easily manipulated, subsetted, and plotted.
This package is part of the RECON (<https://www.repidemicsconsortium.org/>)
toolkit for outbreak analysis (<https://www.reconverse.org>).
Author: Tim Taylor [aut, cre] (<https://orcid.org/0000-0002-8587-7113>),
Thibaut Jombart [ctb],
Zhian N. Kamvar [ctb] (<https://orcid.org/0000-0003-1458-7108>)
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between incidence2 versions 1.2.2 dated 2021-08-23 and 1.2.3 dated 2021-11-07
incidence2-1.2.2/incidence2/man/cumulate-deprecated.Rd |only incidence2-1.2.3/incidence2/DESCRIPTION | 10 incidence2-1.2.3/incidence2/MD5 | 64 incidence2-1.2.3/incidence2/NAMESPACE | 3 incidence2-1.2.3/incidence2/NEWS.md | 8 incidence2-1.2.3/incidence2/R/complete_counts.R | 32 incidence2-1.2.3/incidence2/R/cumulate.R | 85 + incidence2-1.2.3/incidence2/R/incidence.R | 1 incidence2-1.2.3/incidence2/R/incidence2-package.R | 2 incidence2-1.2.3/incidence2/R/plot.R | 31 incidence2-1.2.3/incidence2/R/print.R | 42 incidence2-1.2.3/incidence2/R/regroup.R | 1 incidence2-1.2.3/incidence2/R/summary.R | 5 incidence2-1.2.3/incidence2/build/vignette.rds |binary incidence2-1.2.3/incidence2/inst/doc/Introduction.R | 6 incidence2-1.2.3/incidence2/inst/doc/Introduction.Rmd | 6 incidence2-1.2.3/incidence2/inst/doc/Introduction.html | 456 +----- incidence2-1.2.3/incidence2/inst/doc/alternative_date_groupings.html | 459 +----- incidence2-1.2.3/incidence2/inst/doc/customizing_incidence_plots.R | 8 incidence2-1.2.3/incidence2/inst/doc/customizing_incidence_plots.Rmd | 8 incidence2-1.2.3/incidence2/inst/doc/customizing_incidence_plots.html | 361 +---- incidence2-1.2.3/incidence2/inst/doc/handling_incidence_objects.R | 6 incidence2-1.2.3/incidence2/inst/doc/handling_incidence_objects.Rmd | 11 incidence2-1.2.3/incidence2/inst/doc/handling_incidence_objects.html | 703 +++------- incidence2-1.2.3/incidence2/man/complete_counts.Rd | 9 incidence2-1.2.3/incidence2/man/cumulate.Rd |only incidence2-1.2.3/incidence2/man/plot.incidence2.Rd | 6 incidence2-1.2.3/incidence2/tests/testthat/_snaps/incidence.md | 44 incidence2-1.2.3/incidence2/tests/testthat/test-complete_counts.R | 7 incidence2-1.2.3/incidence2/tests/testthat/test-cumulate.R | 37 incidence2-1.2.3/incidence2/tests/testthat/test-plots.R | 10 incidence2-1.2.3/incidence2/vignettes/Introduction.Rmd | 6 incidence2-1.2.3/incidence2/vignettes/customizing_incidence_plots.Rmd | 8 incidence2-1.2.3/incidence2/vignettes/handling_incidence_objects.Rmd | 11 34 files changed, 919 insertions(+), 1527 deletions(-)
Title: Smooth Effects on Response Penalty for 'CLM'
Description: A regularization method for the cumulative link
models. The 'smooth-effect-on-response penalty' ('SERP') provides
flexible modelling of the ordinal model by enabling the smooth
transition from the general cumulative link model to a coarser form of
the same model. In other words, as the tuning parameter goes from zero
to infinity, the subject-specific effects associated with each
variable in the model tend to a unique global effect. The parameter
estimates of the general cumulative model are mostly unidentifiable or
at least only identifiable within a range of the entire parameter
space. Thus, by maximizing a penalized rather than the usual
non-penalized log-likelihood, this and other numerical problems common
with the general model are to a large extent eliminated. Fitting is
via a modified Newton's method. Several standard model performance and
descriptive methods are also available. For more details on the penalty
implemented here, see, 'Ugba (2021)' <doi:10.21105/joss.03705>,
'Ugba et al. (2021)' <doi:10.3390/stats4030037> and
'Tutz and Gertheiss (2016)' <doi:10.1177/1471082X16642560>.
Author: Ejike R. Ugba [aut, cre, cph] (<https://orcid.org/0000-0003-2572-0023>)
Maintainer: Ejike R. Ugba <ejike.ugba@outlook.com>
Diff between serp versions 0.2.1 dated 2021-09-01 and 0.2.3 dated 2021-11-07
DESCRIPTION | 13 +- MD5 | 53 +++++----- NAMESPACE | 1 NEWS.md | 40 ++++--- R/serp.R | 97 +++++++++---------- R/serp.anova.R | 34 ++---- R/serp.confint.R | 4 R/serp.control.R | 17 ++- R/serp.fit.R | 10 - R/serp.method.R | 87 ++++++++++++----- R/serp.misc.R | 59 +++++------ R/serp.performance.R | 101 ++++++++++--------- R/serp.vcov.R | 8 - R/wine.R | 17 +-- README.md | 108 +++++++++++++++------ man/anova.serp.Rd | 32 +++--- man/coef.serp.Rd | 3 man/errorMetrics.Rd | 77 +++++++-------- man/print.errorMetrics.Rd |only man/serp.Rd | 131 ++++++++++++++++--------- man/serp.control.Rd | 4 man/summary.serp.Rd | 24 ++-- man/vcov.serp.Rd | 2 man/wine.Rd | 36 ++++--- tests/testthat/test-model-formula.R | 6 + tests/testthat/test-model-weights.R | 34 ++++-- tests/testthat/test-penalized-model.R | 162 +++++++++++++++++++++----------- tests/testthat/test-unpenalized-model.R | 20 ++- 28 files changed, 709 insertions(+), 471 deletions(-)
Title: Collective Matrix Factorization for Recommender Systems
Description: Collective matrix factorization (a.k.a. multi-view or multi-way factorization,
Singh, Gordon, (2008) <doi:10.1145/1401890.1401969>) tries to approximate a matrix 'X' as the
product of two low-dimensional matrices aided with secondary information matrices about rows
and/or columns of 'X' which are also factorized using the same latent components.
The intended usage is for recommender systems, dimensionality reduction, and missing value imputation.
Implements extensions of the original model (Cortes, (2018) <arXiv:1809.00366>) and can produce
different factorizations such as the weighted 'implicit-feedback' model (Hu, Koren, Volinsky,
(2008) <doi:10.1109/ICDM.2008.22>), the 'weighted-lambda-regularization' model,
(Zhou, Wilkinson, Schreiber, Pan, (2008) <doi:10.1007/978-3-540-68880-8_32>),
or the enhanced model with 'implicit features' (Rendle, Zhang,
Koren, (2019) <arXiv:1905.01395>), with or without side information. Can use gradient-based
procedures or alternating-least squares procedures (Koren, Bell, Volinsky, (2009)
<doi:10.1109/MC.2009.263>), with either a Cholesky solver, a faster conjugate gradient solver
(Takacs, Pilaszy, Tikk, (2011) <doi:10.1145/2043932.2043987>), or a non-negative
coordinate descent solver (Franc, Hlavac, Navara, (2005) <doi:10.1007/11556121_50>),
providing efficient methods for sparse and dense data, and mixtures thereof.
Supports L1 and L2 regularization in the main models,
offers alternative most-popular and content-based models, and implements functionality
for cold-start recommendations and imputation of 2D data.
Author: David Cortes [aut, cre, cph],
Jorge Nocedal [cph] (Copyright holder of included LBFGS library),
Naoaki Okazaki [cph] (Copyright holder of included LBFGS library),
David Blackman [cph] (Copyright holder of original Xoshiro code),
Sebastiano Vigna [cph] (Copyright holder of original Xoshiro code)
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between cmfrec versions 3.2.2-1 dated 2021-09-26 and 3.2.2-2 dated 2021-11-07
DESCRIPTION | 6 +-- MD5 | 18 ++++----- R/factors.R | 10 ++--- R/factors_single.R | 10 ++--- R/fit.R | 104 ++++++++++++++++++++++++++--------------------------- R/helpers.R | 89 ++++++++++++++++++++++++--------------------- R/items.R | 8 ++-- R/other.R | 24 ++++++------ R/predict_new.R | 2 - R/topN.R | 14 ++++--- 10 files changed, 148 insertions(+), 137 deletions(-)
Title: Tools and Statistical Procedures in Plant Science
Description: The 'inti' package is part of the 'inkaverse' project for developing
different procedures and tools used in plant science and experimental designs.
The mean aim of the package is to support researchers during the planning of
experiments and data collection (tarpuy()), data analysis and graphics (yupana())
, and technical writing.
Learn more about the 'inkaverse' project at <https://inkaverse.com/>.
Author: Flavio Lozano-Isla [aut, cre] (<https://orcid.org/0000-0002-0714-669X>)
Maintainer: Flavio Lozano-Isla <flavjack@gmail.com>
Diff between inti versions 0.4.4 dated 2021-10-01 and 0.5.0 dated 2021-11-07
inti-0.4.4/inti/R/yupana_export_smr.R |only inti-0.4.4/inti/R/yupana_import_smr.R |only inti-0.4.4/inti/man/yupana_export_smr.Rd |only inti-0.4.4/inti/man/yupana_import_smr.Rd |only inti-0.5.0/inti/DESCRIPTION | 8 inti-0.5.0/inti/MD5 | 136 - inti-0.5.0/inti/NAMESPACE | 5 inti-0.5.0/inti/NEWS.md | 28 inti-0.5.0/inti/R/H2cal.R | 227 +-- inti-0.5.0/inti/R/mean_comparison.R | 13 inti-0.5.0/inti/R/plot_raw.R | 51 inti-0.5.0/inti/R/plot_smr.R | 76 + inti-0.5.0/inti/R/tarpuy_varlist.R | 187 +- inti-0.5.0/inti/R/yupana_analysis.R | 23 inti-0.5.0/inti/R/yupana_export.R |only inti-0.5.0/inti/R/yupana_import.R |only inti-0.5.0/inti/R/yupana_mvr.R | 2 inti-0.5.0/inti/README.md | 14 inti-0.5.0/inti/build/partial.rdb |binary inti-0.5.0/inti/build/vignette.rds |binary inti-0.5.0/inti/inst/doc/apps.R | 2 inti-0.5.0/inti/inst/doc/apps.Rmd | 2 inti-0.5.0/inti/inst/doc/apps.html | 6 inti-0.5.0/inti/inst/doc/heritability.R | 14 inti-0.5.0/inti/inst/doc/heritability.Rmd | 24 inti-0.5.0/inti/inst/doc/heritability.html | 256 +-- inti-0.5.0/inti/inst/doc/rticles.R | 2 inti-0.5.0/inti/inst/doc/rticles.Rmd | 2 inti-0.5.0/inti/inst/doc/rticles.html | 2 inti-0.5.0/inti/inst/doc/tarpuy.R | 2 inti-0.5.0/inti/inst/doc/tarpuy.Rmd | 2 inti-0.5.0/inti/inst/doc/yupana.R | 2 inti-0.5.0/inti/inst/doc/yupana.Rmd | 2 inti-0.5.0/inti/inst/doc/yupana.html | 2 inti-0.5.0/inti/inst/tarpuy/rsconnect/shinyapps.io/flavjack/tarpuy.dcf | 6 inti-0.5.0/inti/inst/tarpuy/ui.R | 2 inti-0.5.0/inti/inst/tarpuy/www/custom.css | 4 inti-0.5.0/inti/inst/yupana/rsconnect/shinyapps.io/flavjack/yupana.dcf | 6 inti-0.5.0/inti/inst/yupana/server.R | 711 ++++------ inti-0.5.0/inti/inst/yupana/ui.R | 99 - inti-0.5.0/inti/inst/yupana/www/custom.css | 17 inti-0.5.0/inti/man/H2cal.Rd | 279 ++- inti-0.5.0/inti/man/colortext.Rd | 68 inti-0.5.0/inti/man/footnotes.Rd | 58 inti-0.5.0/inti/man/include_figure.Rd | 66 inti-0.5.0/inti/man/include_table.Rd | 90 - inti-0.5.0/inti/man/jc_tombola.Rd | 102 - inti-0.5.0/inti/man/mean_comparison.Rd | 120 - inti-0.5.0/inti/man/met.Rd | 68 inti-0.5.0/inti/man/metamorphosis.Rd | 74 - inti-0.5.0/inti/man/outliers_remove.Rd | 88 - inti-0.5.0/inti/man/plot_diag.Rd | 34 inti-0.5.0/inti/man/plot_raw.Rd | 182 +- inti-0.5.0/inti/man/plot_smr.Rd | 226 +-- inti-0.5.0/inti/man/potato.Rd | 76 - inti-0.5.0/inti/man/reexports.Rd | 32 inti-0.5.0/inti/man/tarpuy.Rd | 58 inti-0.5.0/inti/man/tarpuy_design.Rd | 136 - inti-0.5.0/inti/man/tarpuy_plex.Rd | 194 +- inti-0.5.0/inti/man/tarpuy_plotdesign.Rd | 84 - inti-0.5.0/inti/man/tarpuy_varlist.Rd | 77 - inti-0.5.0/inti/man/web_table.Rd | 98 - inti-0.5.0/inti/man/yupana.Rd | 58 inti-0.5.0/inti/man/yupana_analysis.Rd | 142 - inti-0.5.0/inti/man/yupana_export.Rd |only inti-0.5.0/inti/man/yupana_import.Rd |only inti-0.5.0/inti/man/yupana_mvr.Rd | 118 - inti-0.5.0/inti/man/yupana_reshape.Rd | 88 - inti-0.5.0/inti/vignettes/apps.Rmd | 2 inti-0.5.0/inti/vignettes/heritability.Rmd | 24 inti-0.5.0/inti/vignettes/rticles.Rmd | 2 inti-0.5.0/inti/vignettes/tarpuy.Rmd | 2 inti-0.5.0/inti/vignettes/yupana.Rmd | 2 73 files changed, 2367 insertions(+), 2216 deletions(-)
Title: A Collection of Functions for Directional Data Analysis
Description: A collection of functions for directional data (including massive data, with millions of observations) analysis. Hypothesis testing, discriminant and regression analysis, MLE of distributions and more are included. The standard textbook for such data is the "Directional Statistics" by Mardia, K. V. and Jupp, P. E. (2000). Other references include a) Phillip J. Paine, Simon P. Preston Michail Tsagris and Andrew T. A. Wood (2018). An elliptically symmetric angular Gaussian distribution. Statistics and Computing 28(3): 689-697. <doi:10.1007/s11222-017-9756-4>. b) Tsagris M. and Alenazi A. (2019). Comparison of discriminant analysis methods on the sphere. Communications in Statistics: Case Studies, Data Analysis and Applications 5(4):467--491. <doi:10.1080/23737484.2019.1684854>. c) P. J. Paine, S. P. Preston, M. Tsagris and Andrew T. A. Wood (2020). Spherical regression models with general covariates and anisotropic errors. Statistics and Computing 30(1): 153--165. <doi:10.1007/s11222-019-09872-2>.
Author: Michail Tsagris, Giorgos Athineou, Christos Adam, Anamul Sajib, Eli Amson, Micah J. Waldstein
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Directional versions 5.1 dated 2021-10-29 and 5.2 dated 2021-11-07
DESCRIPTION | 13 +++---- MD5 | 42 ++++++++++++------------- NAMESPACE | 10 +++--- R/africa.R | 28 +++++++++-------- R/asia.R | 28 +++++++++-------- R/europe.R | 30 +++++++++--------- R/kent.contour.R | 65 +++++++++++++++++++++++++++++++++++++-- R/kent.datacontour.R | 71 ++++++++++++++++++++++++++++++++++++++++--- R/mixvmf.contour.R | 68 ++++++++++++++++++++++++++++++++++++++--- R/north.america.R | 46 ++++++++++----------------- R/oceania.R | 41 ++++++++++-------------- R/south.america.R | 53 ++++++++++---------------------- R/vmf.contour.R | 62 +++++++++++++++++++++++++++++++++++-- R/vmf.kerncontour.R | 74 +++++++++++++++++++++++++++++++++++++++++---- R/worldmap.R | 33 +++++++++----------- man/Directional-package.Rd | 8 ++-- man/kent.contour.Rd | 8 ++-- man/kent.datacontour.Rd | 7 ++-- man/mixvmf.contour.Rd | 5 +-- man/oceania.Rd | 18 ++++++---- man/vmf.contour.Rd | 9 ++--- man/vmf.kerncontour.Rd | 16 +++++---- 22 files changed, 502 insertions(+), 233 deletions(-)
Title: Whitening and High-Dimensional Canonical Correlation Analysis
Description: Implements the whitening methods (ZCA, PCA, Cholesky,
ZCA-cor, and PCA-cor) discussed in Kessy, Lewin, and Strimmer (2018)
"Optimal whitening and decorrelation", <doi:10.1080/00031305.2016.1277159>,
as well as the whitening approach to canonical correlation analysis allowing
negative canonical correlations described in Jendoubi and Strimmer (2019)
"A whitening approach to probabilistic canonical correlation analysis for omics
data integration", <doi:10.1186/s12859-018-2572-9>. The package also offers a
function to simulate random orthogonal matrices.
Author: Korbinian Strimmer, Takoua Jendoubi, Agnan Kessy, Alex Lewin
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between whitening versions 1.2.0 dated 2020-12-06 and 1.3.0 dated 2021-11-07
DESCRIPTION | 15 ++++++++------- MD5 | 20 +++++++++++--------- NAMESPACE | 2 +- NEWS | 5 +++++ R/simOrtho.R |only man/corplot.Rd | 2 +- man/scca.Rd | 4 ++-- man/simOrtho.Rd |only man/whiten.Rd | 5 ++--- man/whitening.package.Rd | 8 ++++---- man/whiteningCrossCov.Rd | 4 ++-- man/whiteningMatrix.Rd | 4 ++-- 12 files changed, 38 insertions(+), 31 deletions(-)
Title: Simple Data Frames
Description: Provides a 'tbl_df' class (the 'tibble') with stricter checking and better formatting than the traditional
data frame.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
Romain Francois [ctb],
Jennifer Bryan [ctb],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between tibble versions 3.1.5 dated 2021-09-30 and 3.1.6 dated 2021-11-07
DESCRIPTION | 6 MD5 | 46 +-- NAMESPACE | 2 NEWS.md | 8 R/new.R | 10 R/pillar.R | 20 + R/tbl_sum.R | 2 R/view.R | 2 R/zzz.R | 2 README.md | 2 inst/doc/formats.html | 23 - inst/doc/invariants.html | 280 ++++++++++++---------- inst/doc/tibble.html | 15 - inst/doc/types.html | 6 man/char.Rd | 11 man/num.Rd | 16 + man/tibble-package.Rd | 3 tests/testthat/_snaps/msg.md | 5 tests/testthat/_snaps/vignette-formats/formats.md | 12 tests/testthat/test-as_tibble.R | 2 tests/testthat/test-msg.R | 3 tests/testthat/test-new.R | 16 + tests/testthat/test-subsetting.R | 2 tests/testthat/test-vignette-tibble.R | 2 24 files changed, 315 insertions(+), 181 deletions(-)
Title: Linear Group Fixed Effects
Description: Transforms away factors with many levels prior to doing an OLS.
Useful for estimating linear models with multiple group fixed effects, and for
estimating linear models which uses factors with many levels as pure control variables. See Gaure (2013) <doi:10.1016/j.csda.2013.03.024>
Includes support for instrumental variables, conditional F statistics for weak instruments,
robust and multi-way clustered standard errors, as well as limited mobility bias correction (Gaure 2014 <doi:10.1002/sta4.68>).
WARNING: This package is NOT under active development anymore, no further improvements are to be expected, and the package is at risk of being removed from CRAN.
Author: Simen Gaure [aut] (<https://orcid.org/0000-0001-7251-8747>),
Grant McDermott [ctb],
Karl Dunkle Werner [ctb],
Matthieu Stigler [ctb, cre] (<https://orcid.org/0000-0002-6802-4290>),
Daniel Lüdecke [ctb]
Maintainer: Matthieu Stigler <Matthieu.Stigler@gmail.com>
Diff between lfe versions 2.8-7 dated 2021-07-31 and 2.8-7.1 dated 2021-11-07
DESCRIPTION | 6 MD5 | 20 build/partial.rdb |binary build/vignette.rds |binary configure | 2892 ++++++++++++++++++++++++++------------------ configure.ac | 18 inst/doc/biascorrection.pdf |binary inst/doc/identification.pdf |binary inst/doc/lfehow.pdf |binary inst/doc/speed.pdf |binary tools/ax_pthread.m4 | 266 ++-- 11 files changed, 1939 insertions(+), 1263 deletions(-)
Title: Access to 'Jamendo' API
Description: Provides an interface to 'Jamendo' API <https://developer.jamendo.com/v3.0>.
Pull audio, features and other information for a given
'Jamendo' user (including yourself!) or enter an artist's -, album's -,
or track's name and retrieve the available information in seconds.
Author: Maximilian Greil [aut, cre],
Benedikt Greil [aut]
Maintainer: Maximilian Greil <maximilian_greil@web.de>
Diff between JamendoR versions 0.1.0 dated 2019-04-15 and 0.1.1 dated 2021-11-07
DESCRIPTION | 16 +++---- MD5 | 87 +++++++++++++++++++++--------------------- NEWS.md |only R/artists.R | 4 - R/authenticate.R | 21 +++++++--- R/feed.R | 8 ++- R/playlists.R | 7 ++- R/usersProfile.R | 42 ++++++++++++++------ README.md | 56 ++++++++++++++++++--------- man/getAlbum.Rd | 7 ++- man/getAlbumMusicinfo.Rd | 7 ++- man/getAlbumTracks.Rd | 7 ++- man/getArtist.Rd | 7 ++- man/getArtistAlbums.Rd | 8 ++- man/getArtistMusicinfo.Rd | 11 +++-- man/getArtistTracks.Rd | 8 ++- man/getArtistsLocation.Rd | 8 ++- man/getAutocompleteSearch.Rd | 7 ++- man/getMyPlaylists.Rd | 7 ++- man/getMyUserProfile.Rd | 7 ++- man/getPlaylist.Rd | 7 ++- man/getPlaylistTracks.Rd | 8 ++- man/getPlaylistsNamesearch.Rd | 7 ++- man/getRadio.Rd | 7 ++- man/getReviewsAlbums.Rd | 7 ++- man/getReviewsAlbumsUser.Rd | 7 ++- man/getReviewsArtistAlbums.Rd | 7 ++- man/getReviewsTracks.Rd | 7 ++- man/getTrack.Rd | 7 ++- man/getTracksNamesearch.Rd | 7 ++- man/getTracksSimilar.Rd | 7 ++- man/getTracksTags.Rd | 3 - man/getUserProfile.Rd | 7 ++- man/getUserProfileAlbums.Rd | 7 ++- man/getUserProfileArtists.Rd | 7 ++- man/getUserProfileTracks.Rd | 3 - man/jamendoOAuth.Rd | 16 +++++-- man/jamendoR.Rd | 1 man/resfreshToken.Rd | 19 ++++++--- man/setUserDislike.Rd | 10 ++-- man/setUserFan.Rd | 7 ++- man/setUserFavorite.Rd | 10 ++-- man/setUserLike.Rd | 7 ++- man/setUserMyalbum.Rd | 10 ++-- tests |only 45 files changed, 335 insertions(+), 175 deletions(-)
Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating random
and regular graphs, graph visualization, centrality methods and much more.
Author: See AUTHORS file.
Maintainer: Tamás Nepusz <ntamas@gmail.com>
Diff between igraph versions 1.2.7 dated 2021-10-15 and 1.2.8 dated 2021-11-07
DESCRIPTION | 6 MD5 | 64 - NEWS.md | 14 R/auto.R | 726 +++++++++--------- R/bipartite.R | 8 R/centrality.R | 2 R/cohesive.blocks.R | 4 R/make.R | 2 build/partial.rdb |binary configure | 18 configure.ac | 2 inst/NEWS.md | 14 man/bipartite_mapping.Rd | 8 man/cohesive_blocks.Rd | 2 man/eigen_centrality.Rd | 2 man/make_.Rd | 2 src/Makevars.win | 2 src/blas.c | 10 src/bliss/graph.cc | 3 src/foreign-dl-parser.c | 3 src/foreign-dl-parser.y | 3 src/foreign-gml-parser.c | 3 src/foreign-gml-parser.y | 3 src/foreign-lgl-parser.c | 3 src/foreign-lgl-parser.y | 3 src/foreign-ncol-parser.c | 3 src/foreign-ncol-parser.y | 3 src/foreign-pajek-parser.c | 3 src/foreign-pajek-parser.y | 3 src/igraph_arpack_internal.h | 24 src/igraph_blas_internal.h | 4 src/igraph_version.h | 2 src/rinterface.c | 1648 +++++++++++++++++++++---------------------- 33 files changed, 1318 insertions(+), 1279 deletions(-)
Title: Read and Write 'FreeSurfer' Neuroimaging File Formats
Description: Provides functions to read and write neuroimaging data in various file formats, with a focus on 'FreeSurfer' <http://freesurfer.net/> formats. This includes, but is not limited to, the following file formats: 1) MGH/MGZ format files, which can contain multi-dimensional images or other data. Typically they contain time-series of three-dimensional brain scans acquired by magnetic resonance imaging (MRI). They can also contain vertex-wise measures of surface morphometry data. The MGH format is named after the Massachusetts General Hospital, and the MGZ format is a compressed version of the same format. 2) 'FreeSurfer' morphometry data files in binary 'curv' format. These contain vertex-wise surface measures, i.e., one scalar value for each vertex of a brain surface mesh. These are typically values like the cortical thickness or brain surface area at each vertex. 3) Annotation file format. This contains a brain surface parcellation derived from a cortical atlas. 4) Surface file format. Contains a brain surface mesh, given by a list of vertices and a list of faces.
Author: Tim Schäfer [aut, cre] (<https://orcid.org/0000-0002-3683-8070>)
Maintainer: Tim Schäfer <ts+code@rcmd.org>
Diff between freesurferformats versions 0.1.15 dated 2021-05-25 and 0.1.16 dated 2021-11-07
freesurferformats-0.1.15/freesurferformats/man/read.smp.brainvoyager.v2.Rd |only freesurferformats-0.1.15/freesurferformats/man/write.smp.brainvoyager.v3.Rd |only freesurferformats-0.1.16/freesurferformats/DESCRIPTION | 14 freesurferformats-0.1.16/freesurferformats/MD5 | 35 - freesurferformats-0.1.16/freesurferformats/NAMESPACE | 1 freesurferformats-0.1.16/freesurferformats/R/brainvoyager.R | 199 +++++++--- freesurferformats-0.1.16/freesurferformats/R/read_fs_mgh.R | 3 freesurferformats-0.1.16/freesurferformats/R/read_fs_surface.R | 53 ++ freesurferformats-0.1.16/freesurferformats/R/read_fs_volume.R | 4 freesurferformats-0.1.16/freesurferformats/R/surface_dist.R | 2 freesurferformats-0.1.16/freesurferformats/inst/doc/freesurferformats.html | 197 --------- freesurferformats-0.1.16/freesurferformats/inst/doc/freesurferformats_header.html | 197 --------- freesurferformats-0.1.16/freesurferformats/inst/doc/freesurferformats_write.html | 197 --------- freesurferformats-0.1.16/freesurferformats/man/read.fs.surface.asc.Rd | 6 freesurferformats-0.1.16/freesurferformats/man/read.smp.brainvoyager.Rd | 2 freesurferformats-0.1.16/freesurferformats/man/read.smp.brainvoyager.v1or2.Rd |only freesurferformats-0.1.16/freesurferformats/man/read.smp.brainvoyager.v4or5.Rd |only freesurferformats-0.1.16/freesurferformats/man/write.smp.brainvoyager.Rd | 2 freesurferformats-0.1.16/freesurferformats/man/write.smp.brainvoyager.v3or4or5.Rd |only freesurferformats-0.1.16/freesurferformats/tests/testthat/test-read_fs_curv.R | 4 freesurferformats-0.1.16/freesurferformats/tests/testthat/test-read_fs_mgh.R | 10 21 files changed, 267 insertions(+), 659 deletions(-)
More information about freesurferformats at CRAN
Permanent link
Title: Domino Data Capture
Description: Instrument prediction code that lets you capture inputs
to the model, predictions, prediction properties, and other metadata.
Author: Vivekananda Tadala [aut, cre],
Sayan Nayak [ctb],
Domino Data Lab Inc. [cph]
Maintainer: Vivekananda Tadala <vivekananda.tadala@dominodatalab.com>
Diff between DominoDataCapture versions 0.1.0 dated 2021-11-02 and 0.1.1 dated 2021-11-07
DESCRIPTION | 8 ++--- MD5 | 12 ++++---- R/data_capture_client.R | 14 ++++------ R/data_capture_client_utils.R | 2 - README.md | 6 ++-- man/DataCaptureClient-class.Rd | 2 - tests/testthat/test_data_capture_client.R | 42 +++++++++++++++++------------- 7 files changed, 44 insertions(+), 42 deletions(-)
More information about DominoDataCapture at CRAN
Permanent link
Title: An Interface for Content-Based Identifiers
Description: An interface for creating, registering, and resolving content-based
identifiers for data management. Content-based identifiers rely on
the 'cryptographic' hashes to refer to the files they identify, thus,
anyone possessing the file can compute the identifier using a
well-known standard algorithm, such as 'SHA256'. By registering
a URL at which the content is accessible to a public archive (such as
Hash Archive) or depositing data in a scientific repository such 'Zenodo',
'DataONE' or 'SoftwareHeritage', the content identifier can serve
many functions typically associated with A Digital Object Identifier
('DOI'). Unlike location-based identifiers like 'DOIs', content-based
identifiers permit the same content to be registered in many locations.
Author: Carl Boettiger [aut, cre] (<https://orcid.org/0000-0002-1642-628X>),
Jorrit Poelen [aut] (<https://orcid.org/0000-0003-3138-4118>),
NSF OAC 1839201 [fnd]
(https://www.nsf.gov/awardsearch/showAward?AWD_ID=1839201)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between contentid versions 0.0.12 dated 2021-08-08 and 0.0.14 dated 2021-11-07
contentid-0.0.12/contentid/R/query_history.R |only contentid-0.0.12/contentid/R/query_sources.R |only contentid-0.0.12/contentid/inst/examples/hash-archive-dump-api.R |only contentid-0.0.12/contentid/man/query_history.Rd |only contentid-0.0.12/contentid/man/query_sources.Rd |only contentid-0.0.14/contentid/DESCRIPTION | 8 contentid-0.0.14/contentid/MD5 | 80 ++++---- contentid-0.0.14/contentid/NAMESPACE | 6 contentid-0.0.14/contentid/NEWS.md | 20 ++ contentid-0.0.14/contentid/R/content_id.R | 7 contentid-0.0.14/contentid/R/default_registries.R | 15 - contentid-0.0.14/contentid/R/has_resource.R |only contentid-0.0.14/contentid/R/hash-archive.R | 3 contentid-0.0.14/contentid/R/history_url.R |only contentid-0.0.14/contentid/R/pin.R | 25 -- contentid-0.0.14/contentid/R/purge_cache.R | 2 contentid-0.0.14/contentid/R/query.R | 15 - contentid-0.0.14/contentid/R/register.R | 2 contentid-0.0.14/contentid/R/resolve.R | 6 contentid-0.0.14/contentid/R/retrieve.R | 11 - contentid-0.0.14/contentid/R/software-heritage.R | 18 + contentid-0.0.14/contentid/R/sources.R |only contentid-0.0.14/contentid/R/store.R | 13 - contentid-0.0.14/contentid/R/tsv_registry.R | 19 +- contentid-0.0.14/contentid/README.md | 59 +++--- contentid-0.0.14/contentid/build/vignette.rds |binary contentid-0.0.14/contentid/inst/WORDLIST | 93 ++++++---- contentid-0.0.14/contentid/inst/doc/intro.html | 2 contentid-0.0.14/contentid/man/content_id.Rd | 6 contentid-0.0.14/contentid/man/default_registries.Rd |only contentid-0.0.14/contentid/man/has_resource.Rd |only contentid-0.0.14/contentid/man/history_swh.Rd | 7 contentid-0.0.14/contentid/man/history_url.Rd |only contentid-0.0.14/contentid/man/pin.Rd | 24 -- contentid-0.0.14/contentid/man/purge_cache.Rd | 2 contentid-0.0.14/contentid/man/query.Rd | 14 - contentid-0.0.14/contentid/man/register.Rd | 3 contentid-0.0.14/contentid/man/resolve.Rd | 5 contentid-0.0.14/contentid/man/retrieve.Rd | 12 - contentid-0.0.14/contentid/man/retrieve_swh.Rd | 3 contentid-0.0.14/contentid/man/sources.Rd |only contentid-0.0.14/contentid/man/sources_swh.Rd | 8 contentid-0.0.14/contentid/man/store.Rd | 12 - contentid-0.0.14/contentid/man/store_swh.Rd | 3 contentid-0.0.14/contentid/tests/testthat/test-pin.R | 3 contentid-0.0.14/contentid/tests/testthat/test-register-query.R | 4 contentid-0.0.14/contentid/tests/testthat/test-remote_api.R | 3 47 files changed, 255 insertions(+), 258 deletions(-)
More information about shiny.semantic at CRAN
Permanent link
Title: Neat and Painless Statistical Reporting
Description: User-friendly, clear and simple statistics, primarily for
publication in psychological science. The main functions are wrappers for
other packages, but there are various additions as well. Every relevant step
from data aggregation to reportable printed statistics is covered for basic
experimental designs.
Author: Gáspár Lukács [aut, cre] (<https://orcid.org/0000-0001-9401-4830>),
Bennett Kleinberg [ctb] (<https://orcid.org/0000-0003-1658-9086>),
Johnny van Doorn [ctb] (<https://orcid.org/0000-0003-0270-096X>)
Maintainer: Gáspár Lukács <lkcsgaspar@gmail.com>
Diff between neatStats versions 1.7.3 dated 2021-08-18 and 1.8.1 dated 2021-11-07
DESCRIPTION | 8 MD5 | 26 - NAMESPACE | 1 R/internal.R | 1214 +++++++++++++++++++++++++++--------------------------- R/mean_ci.R | 17 R/roc_neat.R | 137 +++++- R/sd_ci.R |only R/t_neat.R | 184 +++++--- R/var_tests.R | 69 +-- build/partial.rdb |binary man/mean_ci.Rd | 12 man/roc_neat.Rd | 40 + man/sd_ci.Rd |only man/t_neat.Rd | 19 man/var_tests.Rd | 6 15 files changed, 988 insertions(+), 745 deletions(-)
Title: Linear Quantile Mixed Models
Description: Functions to fit quantile regression models for hierarchical
data (2-level nested designs) as described in Geraci and
Bottai (2014, Statistics and Computing) <doi:10.1007/s11222-013-9381-9>.
A vignette is given in Geraci (2014, Journal of Statistical Software)
<doi:10.18637/jss.v057.i13> and included in the package documents.
The packages also provides functions to fit quantile models for
independent data and for count responses.
Author: Marco Geraci
Maintainer: Marco Geraci <marco.geraci@uniroma1.it>
Diff between lqmm versions 1.5.5 dated 2019-12-13 and 1.5.6 dated 2021-11-07
DESCRIPTION | 10 ++--- MD5 | 20 +++++----- NEWS | 7 +++ R/auxiliary.R | 12 +++--- R/lqmm.R | 98 ++++++++++++++++++++++++++++++++++------------------ inst/CITATION | 5 +- man/lqm.Rd | 2 - man/lqmm-package.Rd | 4 +- man/lqmm.Rd | 2 - man/predict.lqmm.Rd | 16 ++++++-- src/init.c | 14 +++++-- 11 files changed, 122 insertions(+), 68 deletions(-)
Title: Tools for Carbonate Isotope Geochemistry
Description: This toolbox makes working with carbonate oxygen,
carbon, and clumped isotope data reproducible and straightforward.
Use it to quickly calculate isotope fractionation factors,
and apply paleothermometry equations.
Author: David Bajnai [aut, cre] (<https://orcid.org/0000-0002-4053-5056>),
Julian Tödter [ctb]
Maintainer: David Bajnai <david.bajnai@uni-goettingen.de>
Diff between isogeochem versions 1.0.8.3 dated 2021-11-03 and 1.0.9 dated 2021-11-07
DESCRIPTION | 8 - MD5 | 28 ++--- NEWS.md | 12 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/devils_hole.R | 20 +-- inst/doc/devils_hole.Rmd | 27 +---- inst/doc/devils_hole.html | 231 ++++++++++++++++++------------------------- inst/doc/kim_oneil_1997.R | 38 +++---- inst/doc/kim_oneil_1997.Rmd | 41 +++---- inst/doc/kim_oneil_1997.html | 73 ++++++------- vignettes/devils_hole.Rmd | 27 +---- vignettes/devils_hole.md | 10 - vignettes/kim_oneil_1997.Rmd | 41 +++---- vignettes/kim_oneil_1997.md | 25 ++-- 15 files changed, 266 insertions(+), 315 deletions(-)
Title: Fast Estimators for Design-Based Inference
Description: Fast procedures for small set of commonly-used, design-appropriate estimators with robust standard errors and confidence intervals. Includes estimators for linear regression, instrumental variables regression, difference-in-means, Horvitz-Thompson estimation, and regression improving precision of experimental estimates by interacting treatment with centered pre-treatment covariates introduced by Lin (2013) <doi:10.1214/12-AOAS583>.
Author: Graeme Blair [aut, cre],
Jasper Cooper [aut],
Alexander Coppock [aut],
Macartan Humphreys [aut],
Luke Sonnet [aut],
Neal Fultz [ctb],
Lily Medina [ctb],
Russell Lenth [ctb]
Maintainer: Graeme Blair <graeme.blair@ucla.edu>
Diff between estimatr versions 0.30.2 dated 2021-01-17 and 0.30.4 dated 2021-11-07
DESCRIPTION | 8 +-- MD5 | 24 +++++------ NAMESPACE | 3 + NEWS.md | 7 ++- R/S3_confint.R | 8 +++ R/S3_glance.R | 18 ++++---- R/S3_tidy.R | 57 ++++++++++++++++----------- R/estimatr_lm_robust.R | 5 +- build/partial.rdb |binary man/estimatr_tidiers.Rd | 14 +++--- man/lm_robust.Rd | 5 +- src/RcppExports.cpp | 5 ++ tests/testthat/test-s3-methods.R | 81 +++++++++++++++++++++++++++++++++++++++ 13 files changed, 176 insertions(+), 59 deletions(-)
Title: Adaptive Gauss Hermite Quadrature for Bayesian Inference
Description: Adaptive Gauss Hermite Quadrature for Bayesian inference.
The AGHQ method for normalizing posterior distributions
and making Bayesian inferences based on them. Functions are provided for doing
quadrature and marginal Laplace approximations, and summary methods are provided
for making inferences based on the results.
See Stringer (2021). "Implementing Adaptive Quadrature for Bayesian Inference:
the aghq Package" <arXiv:2101.04468>.
Author: Alex Stringer
Maintainer: Alex Stringer <alex.stringer@uwaterloo.ca>
Diff between aghq versions 0.3.0 dated 2021-11-05 and 0.3.1 dated 2021-11-07
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 7 ++++++- tests/testthat/test-03-summary-statistics.R | 6 +++--- 4 files changed, 15 insertions(+), 10 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-30 1.2
2017-06-02 1.1
2016-08-31 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-11-15 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-27 1.0.2
2018-05-29 1.0.1
2018-04-12 1.0
Title: Gliding Box Lacunarity and Other Metrics for 2D Random Closed
Sets
Description: Functions for estimating the gliding box lacunarity (GBL),
covariance, and pair-correlation of a random closed set (RACS) in 2D
from a binary coverage map (e.g. presence-absence land cover maps).
Contains a number of newly-developed covariance-based estimators of
GBL (Hingee et al., 2019) <doi:10.1007/s13253-019-00351-9> and
balanced estimators, proposed by Picka (2000)
<http://www.jstor.org/stable/1428408>, for covariance, centred
covariance, and pair-correlation. Also contains methods for
estimating contagion-like properties of RACS and simulating 2D Boolean
models. Binary coverage maps are usually represented as raster images
with pixel values of TRUE, FALSE or NA, with NA representing
unobserved pixels. A demo for extracting such a binary map from a
geospatial data format is provided. Binary maps may also be
represented using polygonal sets as the foreground, however for most
computations such maps are converted into raster images. The package
is based on research conducted during the author's PhD studies.
Author: Kassel Liam Hingee
Maintainer: Kassel Liam Hingee <kassel.hingee@gmail.com>
Diff between lacunaritycovariance versions 1.1-1 dated 2021-03-24 and 1.1-2 dated 2021-11-07
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- build/partial.rdb |binary inst/doc/estimate_RACS_properties.pdf |binary tests/testthat/test-rbdr.R | 4 ++-- 5 files changed, 13 insertions(+), 13 deletions(-)
More information about lacunaritycovariance at CRAN
Permanent link
Title: High Dimensional Bayesian Ridge Regression without MCMC
Description: Ridge regression provide biased estimators of the regression parameters with lower variance. The HDBRR ("High Dimensional Bayesian Ridge Regression") function fits Bayesian Ridge regression without MCMC, this one uses the SVD or QR decomposition for the posterior computation.
Author: Sergio Perez-Elizalde Developer [aut],
Blanca Monroy-Castillo Developer [aut, cre],
Paulino Perez-Rodriguez User [ctb],
Jose Crossa User [ctb]
Maintainer: Blanca Monroy-Castillo Developer <blancamonroy.96@gmail.com>
Diff between HDBRR versions 1.1.2 dated 2021-10-21 and 1.1.3 dated 2021-11-07
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- inst/doc/HDBRR.Rnw | 4 ++-- inst/doc/HDBRR.pdf |binary man/HDBRR.Rd | 4 ++-- vignettes/HDBRR.Rnw | 4 ++-- 6 files changed, 15 insertions(+), 15 deletions(-)
Title: An Interface to the Dash Ecosystem for Authoring Reactive Web
Applications
Description: A framework for building analytical web applications, Dash offers a pleasant and productive development experience. No JavaScript required.
Author: Chris Parmer [aut],
Ryan Patrick Kyle [aut] (<https://orcid.org/0000-0001-5829-9867>),
Carson Sievert [aut] (<https://orcid.org/0000-0002-4958-2844>),
Hammad Khan [aut, cre] (<https://orcid.org/0000-0003-2479-9841>),
Plotly Technologies [cph]
Maintainer: Hammad Khan <hammadkhan@plotly.com>
Diff between dash versions 0.9.2 dated 2021-11-03 and 0.9.3 dated 2021-11-07
dash-0.9.2/dash/tests/testthat/test-routes.R |only dash-0.9.3/dash/DESCRIPTION | 9 dash-0.9.3/dash/MD5 | 9 dash-0.9.3/dash/NAMESPACE | 1 dash-0.9.3/dash/R/imports.R | 2 dash-0.9.3/dash/tests/testthat/test-attributes.R | 257 ----------------------- 6 files changed, 8 insertions(+), 270 deletions(-)
Title: Data for Generalised Additive Models for Location Scale and
Shape
Description: Data used as examples in the current two books on Generalised Additive Models for Location Scale and Shape introduced by Rigby and Stasinopoulos (2005), <doi:10.1111/j.1467-9876.2005.00510.x>.
Author: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>, Bob
Rigby, Fernanda De Bastiani
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss.data versions 6.0-1 dated 2021-03-18 and 6.0-2 dated 2021-11-07
DESCRIPTION | 8 +-- MD5 | 113 ++++++++++++++++++++++++------------------------ build |only data/CD4.rda |binary data/InfMort.RData |binary data/LGAclaims.rda |binary data/Leukemia.RData |binary data/Mums.rda |binary data/VictimsOfCrime.rda |binary data/acidity.rda |binary data/aep.rda |binary data/aids.rda |binary data/aircond.rda |binary data/alveolar.rda |binary data/brownfat.RData |binary data/bush2000.RData |binary data/cable.RData |binary data/computer.rda |binary data/cysts.RData |binary data/db.rda |binary data/dbbmi.rda |binary data/dbhh.RData |binary data/eu15.RData |binary data/fabric.rda |binary data/film30.rda |binary data/film90.RData |binary data/glass.rda |binary data/glasses.RData |binary data/grip.RData |binary data/hodges.rda |binary data/hodges1.rda |binary data/lice.rda |binary data/lungFunction.RData |binary data/margolin.rda |binary data/meta.rda |binary data/mvi.rda |binary data/mviBig.rda |binary data/oil.RData |binary data/parzen.rda |binary data/plasma.RData |binary data/polio.rda |binary data/rent.rda |binary data/rent99.polys.rda |binary data/rent99.rda |binary data/respInf.rda |binary data/sleep.RData |binary data/species.rda |binary data/stylo.rda |binary data/tensile.rda |binary data/tidal.RData |binary data/trd.RData |binary data/tse.rda |binary data/usair.rda |binary data/vas5.rda |binary man/InfMort.Rd | 2 man/VictimsOfCrime.Rd | 2 man/oil.Rd | 4 - man/rent.Rd | 2 58 files changed, 66 insertions(+), 65 deletions(-)
Title: Analyze Cricket Performances Based on Data from Cricsheet
Description: Analyzing performances of cricketers and cricket teams
based on 'yaml' match data from Cricsheet <https://cricsheet.org/>.
Author: Tinniam V Ganesh
Maintainer: Tinniam V Ganesh <tvganesh.85@gmail.com>
Diff between yorkr versions 0.0.27 dated 2021-10-10 and 0.0.28 dated 2021-11-07
yorkr-0.0.27/yorkr/R/bowlerWicketPlot.R |only yorkr-0.0.27/yorkr/man/bowlerWicketPlot.Rd |only yorkr-0.0.28/yorkr/DESCRIPTION | 8 yorkr-0.0.28/yorkr/MD5 | 99 +++++++--- yorkr-0.0.28/yorkr/NAMESPACE | 22 ++ yorkr-0.0.28/yorkr/R/bowlerMeanEconomyRate.R | 1 yorkr-0.0.28/yorkr/R/bowlerMeanRunsConceded.R | 1 yorkr-0.0.28/yorkr/R/bowlerMovingAverage.R | 1 yorkr-0.0.28/yorkr/R/bowlerWicketsAcrossOvers.R |only yorkr-0.0.28/yorkr/R/bowlerWicketsAgainstOppn.R | 1 yorkr-0.0.28/yorkr/R/bowlerWicketsVenue.R | 1 yorkr-0.0.28/yorkr/R/bowlerWktsPredict.R | 1 yorkr-0.0.28/yorkr/R/convertAllYaml2RDataframes.R | 6 yorkr-0.0.28/yorkr/R/convertAllYaml2RDataframesT20.R | 1 yorkr-0.0.28/yorkr/R/convertYaml2RDataframe.R | 6 yorkr-0.0.28/yorkr/R/convertYaml2RDataframeT20.R | 1 yorkr-0.0.28/yorkr/R/getAllMatchesAllOpposition.R | 1 yorkr-0.0.28/yorkr/R/getAllMatchesBetweenTeams.R | 1 yorkr-0.0.28/yorkr/R/matchWormWicket.R |only yorkr-0.0.28/yorkr/R/parseYamlOver.R | 3 yorkr-0.0.28/yorkr/R/teamERAcrossOvers.R |only yorkr-0.0.28/yorkr/R/teamERAcrossOversAllOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/teamERAcrossOversOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/teamRunsAcrossOvers.R |only yorkr-0.0.28/yorkr/R/teamRunsAcrossOversAllOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/teamRunsAcrossOversOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/teamSRAcrossOvers.R |only yorkr-0.0.28/yorkr/R/teamSRAcrossOversAllOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/teamSRAcrossOversOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/teamWicketsAcrossOvers.R |only yorkr-0.0.28/yorkr/R/teamWicketsAcrossOversAllOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/teamWicketsAcrossOversOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/topERBowlerAcrossOversAllOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/topERBowlerAcrossOversOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/topRunsBatsmenAcrossOversAllOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/topRunsBatsmenAcrossOversOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/topSRBatsmenAcrossOversAllOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/topSRBatsmenAcrossOversOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/topWicketsBowlerAcrossOversAllOppnAllMatches.R |only yorkr-0.0.28/yorkr/R/topWicketsBowlerAcrossOversOppnAllMatches.R |only yorkr-0.0.28/yorkr/man/bowlerMeanEconomyRate.Rd | 1 yorkr-0.0.28/yorkr/man/bowlerMeanRunsConceded.Rd | 1 yorkr-0.0.28/yorkr/man/bowlerMovingAverage.Rd | 1 yorkr-0.0.28/yorkr/man/bowlerWicketsAgainstOpposition.Rd | 1 yorkr-0.0.28/yorkr/man/bowlerWicketsVenue.Rd | 1 yorkr-0.0.28/yorkr/man/bowlerWktsPredict.Rd | 1 yorkr-0.0.28/yorkr/man/convertAllYaml2RDataframes.Rd | 1 yorkr-0.0.28/yorkr/man/convertAllYaml2RDataframesT20.Rd | 1 yorkr-0.0.28/yorkr/man/convertYaml2RDataframe.Rd | 1 yorkr-0.0.28/yorkr/man/convertYaml2RDataframeT20.Rd | 1 yorkr-0.0.28/yorkr/man/getAllMatchesAllOpposition.Rd | 1 yorkr-0.0.28/yorkr/man/getAllMatchesBetweenTeams.Rd | 1 yorkr-0.0.28/yorkr/man/matchWormWicketGraph.Rd |only yorkr-0.0.28/yorkr/man/teamERAcrossOvers.Rd |only yorkr-0.0.28/yorkr/man/teamERAcrossOversAllOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/teamERAcrossOversOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/teamRunsAcrossOvers.Rd |only yorkr-0.0.28/yorkr/man/teamRunsAcrossOversAllOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/teamRunsAcrossOversOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/teamSRAcrossOvers.Rd |only yorkr-0.0.28/yorkr/man/teamSRAcrossOversAllOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/teamSRAcrossOversOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/teamWicketsAcrossOvers.Rd |only yorkr-0.0.28/yorkr/man/teamWicketsAcrossOversAllOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/teamWicketsAcrossOversOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/topERBowlerAcrossOversAllOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/topERBowlerAcrossOversOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/topRunsBatsmenAcrossOversAllOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/topRunsBatsmenAcrossOversOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/topSRBatsmenAcrossOversAllOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/topSRBatsmenAcrossOversOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/topWicketsBowlerAcrossOversAllOppnAllMatches.Rd |only yorkr-0.0.28/yorkr/man/topWicketsBowlerAcrossOversOppnAllMatches.Rd |only 73 files changed, 108 insertions(+), 58 deletions(-)
Title: Open Source Geometry Engine ('GEOS') R API
Description: Provides an R API to the Open Source Geometry Engine
('GEOS') library (<https://trac.osgeo.org/geos/>) and a vector format
with which to efficiently store 'GEOS' geometries. High-performance functions
to extract information from, calculate relationships between, and
transform geometries are provided. Finally, facilities to import
and export geometry vectors to other spatial formats are provided.
Author: Dewey Dunnington [aut, cre] (<https://orcid.org/0000-0002-9415-4582>),
Edzer Pebesma [aut] (<https://orcid.org/0000-0001-8049-7069>)
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between geos versions 0.1.2 dated 2021-10-22 and 0.1.3 dated 2021-11-07
DESCRIPTION | 9 - MD5 | 52 +++++----- NAMESPACE | 7 + NEWS.md | 20 +++ R/compat-sf.R | 8 - R/geos-binary-atomic.R | 20 +++ R/geos-io.R | 35 ++++++ R/geos-plot.R | 102 ++++++++++++++++---- R/geos-unary-geometry.R | 51 +++++++++- man/figures/README-ex-plot-1.png |binary man/geos_centroid.Rd | 33 +++++- man/geos_delaunay_triangles.Rd | 3 man/geos_distance.Rd | 9 + man/geos_read_wkt.Rd | 27 ++++- man/plot.geos_geometry.Rd | 20 ++- src/geos-binary-atomic.c | 121 ++++++++++++++++++++++- src/geos-io.c | 152 +++++++++++++++++++++++++++++- src/geos-unary-geometry.c | 101 +++++++++++++++++++ src/init.c | 22 +++- tests/testthat/Rplots.pdf |binary tests/testthat/test-geos-binary-atomic.R | 30 +++++ tests/testthat/test-geos-geometry.R | 8 - tests/testthat/test-geos-io.R | 54 ++++++++++ tests/testthat/test-geos-plot.R | 14 ++ tests/testthat/test-geos-strtree.R | 2 tests/testthat/test-geos-unary-atomic.R | 8 - tests/testthat/test-geos-unary-geometry.R | 59 +++++++++++ 27 files changed, 859 insertions(+), 108 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-30 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-25 1.5.1
2012-07-07 1.4.4
2012-03-01 1.4.3
2011-12-02 1.4.2