Title: Access to 'Azure DevOps' API via R
Description: Implementation of 'Azure DevOps' <https://azure.microsoft.com/> API calls.
It enables the extraction of information about repositories, build and release definitions and individual releases.
It also helps create repositories and work items within a project without logging into 'Azure DevOps'.
There is the ability to use any API service with a shell for any non-predefined call.
Author: Ashley Baldry [aut, cre]
Maintainer: Ashley Baldry <arbaldry91@gmail.com>
Diff between vstsr versions 1.0.0 dated 2018-03-14 and 1.1.0 dated 2021-11-08
DESCRIPTION | 20 +-- MD5 | 61 ++++++------ NAMESPACE | 6 - NEWS.md | 6 + R/account.R | 74 +++++--------- R/authentication.R | 22 ++-- R/build.R | 36 +++---- R/custom.R | 45 +++++--- R/git.R | 39 ++++--- R/project.R | 27 ++--- R/release.R | 202 ++++++++++++++++++---------------------- R/repository.R | 111 ++++++++++----------- R/utils.R |only R/vstsr-package.R | 11 -- R/workitem.R | 135 ++++++++++++++------------ README.md | 5 man/vsts_account.Rd | 40 +++---- man/vsts_auth_key.Rd | 20 ++- man/vsts_build_def.Rd | 25 ++-- man/vsts_create_release.Rd | 27 +++-- man/vsts_create_wk.Rd | 10 - man/vsts_get_commits.Rd | 16 +-- man/vsts_get_release.Rd | 47 +-------- man/vsts_get_wk.Rd | 18 +-- man/vsts_get_workitem_fields.Rd | 29 +++-- man/vsts_project.Rd | 10 - man/vsts_release_def.Rd | 16 +-- man/vsts_release_env.Rd | 16 +-- man/vsts_repo.Rd | 32 +++--- man/vsts_run_command.Rd | 21 ++-- man/vstsr.Rd | 9 - tests/testthat/test-auth.R | 8 - 32 files changed, 573 insertions(+), 571 deletions(-)
Title: Optimal Subset Matching with Refined Covariate Balance
Description: Tools for optimal subset matching of treated units
and control units in observational studies, with support
for refined covariate balance constraints, (including
fine and near-fine balance as special cases). A close
relative is the 'rcbalance' package. See Pimentel,
et al.(2015) <doi:10.1080/01621459.2014.997879>
and Pimentel and Kelz (2020)
<doi:10.1080/01621459.2020.1720693>.
Author: Samuel D. Pimentel
Maintainer: Samuel D. Pimentel <spi@berkeley.edu>
Diff between rcbsubset versions 1.1.4 dated 2018-05-17 and 1.1.5 dated 2021-11-08
DESCRIPTION | 16 ++-- MD5 | 12 +-- NAMESPACE | 1 R/rcbsubset-internal.R | 161 ++++------------------------------------------- R/rcbsubset.R | 18 ++++- build/partial.rdb |binary man/rcbsubset-package.Rd | 4 - 7 files changed, 49 insertions(+), 163 deletions(-)
Title: Create Reports Using R and 'asciidoc'
Description: Inspired by Karl Broman`s reader on using 'knitr'
with 'asciidoc'
(<https://kbroman.org/knitr_knutshell/pages/asciidoc.html>), this is
merely a wrapper to 'knitr' and 'asciidoc'.
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between rasciidoc versions 3.2.0 dated 2021-11-04 and 4.0.0 dated 2021-11-08
DESCRIPTION | 6 MD5 | 32 +-- NEWS.md | 6 R/internals.R | 228 +++++++++++++++------------ R/knitr_internals.R | 2 R/rasciidoc-package.R | 3 R/rasciidoc.R | 38 +++- R/render.R | 11 - README.md | 2 inst/NEWS.rd | 8 inst/doc/An_Introduction_to_rasciidoc.html | 91 ++++++++-- inst/runit_tests/runit-knitr_internals_mod.R | 1 inst/runit_tests/runit-render.R | 24 +- man/rasciidoc-package.Rd | 6 man/rasciidoc.Rd | 27 ++- man/render.Rd | 24 ++ tests/testthat/test-main.R | 77 +++++---- 17 files changed, 386 insertions(+), 200 deletions(-)
Title: Read Spectrometric Data and Metadata
Description: Parse various reflectance/transmittance/absorbance spectra file
formats to extract spectral data and metadata, as described in Gruson, White
& Maia (2019) <doi:10.21105/joss.01857>. Among other formats, it can import
files from 'Avantes' <https://www.avantes.com/>, 'CRAIC'
<https://www.microspectra.com/>, and 'OceanInsight' (formerly 'OceanOptics')
<https://www.oceaninsight.com/> brands.
Author: Hugo Gruson [cre, aut, cph] (<https://orcid.org/0000-0002-4094-1476>),
Rafael Maia [aut, cph] (<https://orcid.org/0000-0002-7563-9795>),
Thomas White [aut, cph] (<https://orcid.org/0000-0002-3976-1734>),
Kotya Karapetyan [ctb, cph] (Author of the MATLAB script to read
AvaSoft7 binary files (CC-BY))
Maintainer: Hugo Gruson <hugo.gruson+R@normalesup.org>
Diff between lightr versions 1.6.1 dated 2021-11-08 and 1.6.2 dated 2021-11-08
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ build/partial.rdb |binary tests/testthat/test_compare_photobiologyInOut.R | 3 +++ 5 files changed, 16 insertions(+), 7 deletions(-)
Title: Clustering on Network of Samples
Description: Wires together large collections of single-cell RNA-seq datasets, which allows for both the identification of recurrent cell clusters and the propagation of information between datasets in multi-sample or atlas-scale collections. 'Conos' focuses on the uniform mapping of homologous cell types across heterogeneous sample collections. For instance, users could investigate a collection of dozens of peripheral blood samples from cancer patients combined with dozens of controls, which perhaps includes samples of a related tissue such as lymph nodes. This package interacts with data available through the 'conosPanel' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/conos>. The size of the 'conosPanel' package is approximately 12 MB.
Author: Viktor Petukhov [aut],
Nikolas Barkas [aut],
Peter Kharchenko [aut],
Weiliang Qiu [ctb],
Evan Biederstedt [aut, cre]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between conos versions 1.4.3 dated 2021-08-07 and 1.4.4 dated 2021-11-08
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- R/access_wrappers.R | 23 +++++++++++++++++++++++ R/conclass.R | 15 ++++++++------- README.md | 4 ++-- man/Conos.Rd | 8 ++++---- man/getGeneExpression.Rd | 6 ++++++ src/RcppExports.cpp | 5 +++++ 8 files changed, 61 insertions(+), 26 deletions(-)
Title: Interface to 'Digital Ocean'
Description: Provides a set of functions for interacting with the 'Digital
Ocean' API <https://www.digitalocean.com/>, including
creating images, destroying them, rebooting, getting details on regions, and
available images.
Author: Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>),
Hadley Wickham [aut],
Winston Chang [aut],
Bob Rudis [ctb],
Bryce Mecum [ctb] (<https://orcid.org/0000-0002-0381-3766>),
Mauricio Vargas [aut, cre] (<https://orcid.org/0000-0003-1017-7574>),
RStudio [cph]
Maintainer: Mauricio Vargas <mavargas11@uc.cl>
Diff between analogsea versions 1.0.0 dated 2021-06-01 and 1.0.3 dated 2021-11-08
analogsea-1.0.0/analogsea/LICENSE |only analogsea-1.0.3/analogsea/DESCRIPTION | 25 + analogsea-1.0.3/analogsea/MD5 | 48 ++- analogsea-1.0.3/analogsea/NAMESPACE | 10 analogsea-1.0.3/analogsea/NEWS.md | 23 + analogsea-1.0.3/analogsea/R/debian.R | 135 ++-------- analogsea-1.0.3/analogsea/R/deprecated_defunct.R | 9 analogsea-1.0.3/analogsea/R/do_oauth.R | 6 analogsea-1.0.3/analogsea/R/droplet-actions.R | 62 +++- analogsea-1.0.3/analogsea/R/droplet-ssh.R | 17 - analogsea-1.0.3/analogsea/R/droplet_execute.R | 4 analogsea-1.0.3/analogsea/R/sizes.R | 4 analogsea-1.0.3/analogsea/R/ubuntu.R |only analogsea-1.0.3/analogsea/man/analogsea-deprecated.Rd | 11 analogsea-1.0.3/analogsea/man/create_password.Rd |only analogsea-1.0.3/analogsea/man/debian.Rd | 26 - analogsea-1.0.3/analogsea/man/docklet_create.Rd | 3 analogsea-1.0.3/analogsea/man/docklets_create.Rd | 3 analogsea-1.0.3/analogsea/man/droplet_create.Rd | 3 analogsea-1.0.3/analogsea/man/droplet_execute.Rd | 4 analogsea-1.0.3/analogsea/man/droplet_ip.Rd |only analogsea-1.0.3/analogsea/man/droplet_snapshot.Rd | 10 analogsea-1.0.3/analogsea/man/droplets_create.Rd | 3 analogsea-1.0.3/analogsea/man/ubuntu.Rd |only analogsea-1.0.3/analogsea/tests/testthat/test-droplet.R | 4 analogsea-1.0.3/analogsea/tests/testthat/test-droplet_actions_1.R |only analogsea-1.0.3/analogsea/tests/testthat/test-droplet_actions_2.R |only analogsea-1.0.3/analogsea/tests/testthat/test-droplet_actions_3.R |only analogsea-1.0.3/analogsea/tests/testthat/test-droplet_create.R | 37 ++ 29 files changed, 222 insertions(+), 225 deletions(-)
Title: Client for 'jq', a 'JSON' Processor
Description: Client for 'jq', a 'JSON' processor (<https://stedolan.github.io/jq/>),
written in C. 'jq' allows the following with 'JSON' data: index into, parse,
do calculations, cut up and filter, change key names and values, perform
conditionals and comparisons, and more.
Author: Rich FitzJohn [aut],
Jeroen Ooms [aut],
Scott Chamberlain [aut, cre],
Stefan Milton Bache [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between jqr versions 1.2.1 dated 2021-05-06 and 1.2.2 dated 2021-11-08
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ tests/testthat/test-peek.R | 3 ++- 4 files changed, 13 insertions(+), 7 deletions(-)
Title: Robust Inference for Absolute Abundance in Microbiome Analysis
Description: A novel approach to make inference on the association of covariates with the absolute abundance (AA) of 'microbiome' in an ecosystem. It can be also directly applied to relative abundance (RA) data to make inference on AA (even if AA data is not available) because the ratio of two RA is equal ratio of their AA. This algorithm can estimate and test the associations of interest while adjusting for potential 'confounders'. The estimates of this method have easy interpretation like a typical regression analysis. High-dimensional covariates are handled with regularization and it is implemented by parallel computing. This algorithm finds optimal reference 'taxa/OTU (Operational Taxonomic Unit)/ASV (Amplicon Sequence Bariant)' and uses permutation to control FDR (False Discovery Rate).
Author: Quran Wu [aut],
Zhigang Li [aut, cre]
Maintainer: Zhigang Li <zhigang.li@ufl.edu>
Diff between IFAA versions 1.0.2 dated 2021-07-20 and 1.0.3 dated 2021-11-08
IFAA-1.0.2/IFAA/R/regulariz_MZILN.R |only IFAA-1.0.2/IFAA/inst/doc/IFAAvig.R |only IFAA-1.0.2/IFAA/inst/doc/IFAAvig.Rmd |only IFAA-1.0.2/IFAA/inst/doc/IFAAvig.pdf |only IFAA-1.0.2/IFAA/man/figures |only IFAA-1.0.2/IFAA/vignettes/IFAAvig.Rmd |only IFAA-1.0.3/IFAA/DESCRIPTION | 21 + IFAA-1.0.3/IFAA/MD5 | 47 +-- IFAA-1.0.3/IFAA/NAMESPACE | 11 IFAA-1.0.3/IFAA/NEWS.md | 4 IFAA-1.0.3/IFAA/R/IFAAfunc.R | 71 +++-- IFAA-1.0.3/IFAA/R/MZILN.R | 42 ++- IFAA-1.0.3/IFAA/R/Regulariz_MZILN.R |only IFAA-1.0.3/IFAA/R/allUserDefinedFuncs.R | 9 IFAA-1.0.3/IFAA/R/bootResuHDCI.R | 269 +++++++++++++++++---- IFAA-1.0.3/IFAA/R/getScrResu.R | 162 +++--------- IFAA-1.0.3/IFAA/R/metaData.R | 62 +++- IFAA-1.0.3/IFAA/R/originDataScreen.R | 193 ++++++++++----- IFAA-1.0.3/IFAA/R/regulariz.R | 363 +++++++++++++++++++++------- IFAA-1.0.3/IFAA/R/runGlmnet.R |only IFAA-1.0.3/IFAA/R/runScrParal.R | 403 +------------------------------- IFAA-1.0.3/IFAA/R/runlinear.R |only IFAA-1.0.3/IFAA/README.md | 19 - IFAA-1.0.3/IFAA/build/IFAA.pdf |binary IFAA-1.0.3/IFAA/build/vignette.rds |binary IFAA-1.0.3/IFAA/inst/doc/IFAA.R |only IFAA-1.0.3/IFAA/inst/doc/IFAA.Rmd |only IFAA-1.0.3/IFAA/inst/doc/IFAA.html |only IFAA-1.0.3/IFAA/man/IFAA.Rd | 27 -- IFAA-1.0.3/IFAA/man/MZILN.Rd | 17 + IFAA-1.0.3/IFAA/vignettes/IFAA.Rmd |only 31 files changed, 893 insertions(+), 827 deletions(-)
Title: General Resampling Infrastructure
Description: Classes and functions to create and summarize different types
of resampling objects (e.g. bootstrap, cross-validation).
Author: Julia Silge [aut, cre] (<https://orcid.org/0000-0002-3671-836X>),
Fanny Chow [aut],
Max Kuhn [aut],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Julia Silge <julia.silge@rstudio.com>
Diff between rsample versions 0.1.0 dated 2021-05-08 and 0.1.1 dated 2021-11-08
rsample-0.1.0/rsample/tests/testthat/test_gather.R |only rsample-0.1.1/rsample/DESCRIPTION | 41 +++--- rsample-0.1.1/rsample/MD5 | 63 ++++------ rsample-0.1.1/rsample/NAMESPACE | 4 rsample-0.1.1/rsample/NEWS.md | 12 + rsample-0.1.1/rsample/R/boot.R | 11 - rsample-0.1.1/rsample/R/gather.R | 4 rsample-0.1.1/rsample/R/groups.R | 8 - rsample-0.1.1/rsample/R/initial_split.R | 10 - rsample-0.1.1/rsample/R/make_strata.R | 36 +++-- rsample-0.1.1/rsample/R/mc.R | 9 - rsample-0.1.1/rsample/R/misc.R | 59 ++++++++- rsample-0.1.1/rsample/R/rset.R | 3 rsample-0.1.1/rsample/R/validation_split.R | 48 ++++++- rsample-0.1.1/rsample/R/vfold.R | 30 ++-- rsample-0.1.1/rsample/build/vignette.rds |binary rsample-0.1.1/rsample/inst/doc/Working_with_rsets.html | 12 - rsample-0.1.1/rsample/inst/doc/rsample.html | 2 rsample-0.1.1/rsample/man/bootstraps.Rd | 20 +-- rsample-0.1.1/rsample/man/gather.rset.Rd | 2 rsample-0.1.1/rsample/man/group_vfold_cv.Rd | 8 - rsample-0.1.1/rsample/man/initial_split.Rd | 17 +- rsample-0.1.1/rsample/man/make_splits.Rd | 24 +++ rsample-0.1.1/rsample/man/make_strata.Rd | 5 rsample-0.1.1/rsample/man/mc_cv.Rd | 18 +- rsample-0.1.1/rsample/man/validation_split.Rd | 29 +++- rsample-0.1.1/rsample/man/vfold_cv.Rd | 35 +++-- rsample-0.1.1/rsample/tests/testthat.R | 6 rsample-0.1.1/rsample/tests/testthat/test-make-splits.R | 42 ++++++ rsample-0.1.1/rsample/tests/testthat/test_initial.R | 9 + rsample-0.1.1/rsample/tests/testthat/test_strata.R | 1 rsample-0.1.1/rsample/tests/testthat/test_validation.R | 37 +++++ rsample-0.1.1/rsample/vignettes/Applications/Survival_Analysis.Rmd | 5 33 files changed, 408 insertions(+), 202 deletions(-)
Title: Interface to 'LibBi'
Description: Provides a complete interface to 'LibBi', a library for Bayesian inference (see <http://libbi.org> and <doi:10.18637/jss.v067.i10> for more information). This includes functions for manipulating 'LibBi' models, for reading and writing 'LibBi' input/output files, for converting 'LibBi' output to provide traces for use with the coda package, and for running 'LibBi' to conduct inference.
Author: Pierre E. Jacob [aut],
Anthony Lee [ctb],
Lawrence M. Murray [ctb],
Sebastian Funk [aut, cre],
Sam Abbott [ctb]
Maintainer: Sebastian Funk <sebastian.funk@lshtm.ac.uk>
Diff between rbi versions 0.10.3 dated 2020-04-17 and 0.10.4 dated 2021-11-08
DESCRIPTION | 11 - MD5 | 22 +-- NEWS.md | 4 R/bi_model.R | 3 R/rbi-package.R | 7 README.md | 10 - build/vignette.rds |binary inst/doc/introduction.Rmd.rsp | 14 - inst/doc/introduction.html | 294 ++++++++++++++--------------------------- man/rbi-package.Rd | 5 man/write_model.Rd | 3 vignettes/introduction.Rmd.rsp | 14 - 12 files changed, 149 insertions(+), 238 deletions(-)
Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data are some of the functions included.
The standard textbook for such data is John Aitchison's (1986) "The statistical analysis of compositional data". Relevant papers include:
a) Tsagris M.T., Preston S. and Wood A.T.A. (2011). A data-based power transformation for compositional data. Fourth International International Workshop on Compositional Data Analysis.
b) Tsagris M. (2014). The k-NN algorithm for compositional data: a revised approach with and without zero values present. Journal of Data Science, 12(3):519--534.
c) Tsagris M. (2015). A novel, divergence based, regression for compositional data. Proceedings of the 28th Panhellenic Statistics Conference, 15-18 April 2015, Athens, Greece, 430--444.
d) Tsagris M. (2015). Regression analysis with compositional data containing zero values. Chilean Journal of Statistics, 6(2):47--57.
e) Tsagris M., Preston S. and Wood A.T.A. (2016). Improved supervised classification for compositional data using the alpha-transformation. Journal of Classification, 33(2):243--261. <doi:10.1007/s00357-016-9207-5>.
f) Tsagris M., Preston S. and Wood A.T.A. (2017). Nonparametric hypothesis testing for equality of means on the simplex. Journal of Statistical Computation and Simulation, 87(2): 406--422. <doi:10.1080/00949655.2016.1216554>.
g) Tsagris M. and Stewart C. (2018). A Dirichlet regression model for compositional data with zeros. Lobachevskii Journal of Mathematics,39(3): 398--412. <doi:10.1134/S1995080218030198>.
h) Alenazi A. (2019). Regression for compositional data with compositional data as predictor variables with or without zero values. Journal of Data Science, 17(1): 219--238. <doi:10.6339/JDS.201901_17(1).0010>.
i) Tsagris M. and Stewart C. (2020). A folded model for compositional data analysis. Australian and New Zealand Journal of Statistics, 62(2):249--277. <doi:10.1111/anzs.12289>.
j) Tsagris M., Alenazi A. and Stewart C. (2021). Non-parametric regression models for compositional data. <arXiv:2002.05137>.
We further include functions for percentages (or proportions).
Author: Michail Tsagris [aut, cre],
Giorgos Athineou [aut],
Abdulaziz Alenazi [ctb],
Christos Adam [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Compositional versions 5.0 dated 2021-10-06 and 5.2 dated 2021-11-08
DESCRIPTION | 18 ++- MD5 | 209 ++++++++++++++++++++++--------------------- NAMESPACE | 7 - R/ait.R |only R/ait.knn.R |only R/aitdist.R |only R/aitdista.R |only R/aitknn.tune.R |only R/akern.reg.R | 4 R/aknn.reg.R | 7 - R/alef.R | 6 + R/alfa.R | 5 - R/alfa.contour.R | 150 ++++++++++++++++++++++++++---- R/alfa.knn.reg.R | 2 R/alfa.profile.R | 4 R/alfa.reg.R | 22 ++-- R/alfa.tune.R | 7 - R/alfainv.R | 3 R/alfaknnreg.tune.R | 4 R/alfann.R | 3 R/alfareg.tune.R | 2 R/alfaridge.plot.R | 2 R/alpha.mle.R | 2 R/bc.R | 4 R/bic.alfamixnorm.R | 2 R/bic.mixcompnorm.R | 4 R/bivt.contour.R | 146 ++++++++++++++++++++++++++---- R/choose.pc.R | 4 R/comp.kerncontour.R | 140 ++++++++++++++++++++++++++-- R/cv.dda.R | 4 R/dda.R | 2 R/diri.contour.R | 147 ++++++++++++++++++++++++++---- R/diri.est.R | 6 - R/diri.nr.R | 2 R/diri.reg.R | 9 + R/esova.R | 2 R/fd.contour.R | 147 ++++++++++++++++++++++++++---- R/fold.contour.R | 143 ++++++++++++++++++++++++++--- R/fp.R | 4 R/frechet.R | 10 +- R/frechet2.R | 4 R/ice.pprcomp.R | 4 R/js.compreg.R | 3 R/kent.contour.R | 143 ++++++++++++++++++++++++++--- R/kl.alfapcr.R | 3 R/kl.compreg.R | 3 R/kl.compreg2.R | 2 R/kl.diri.R | 2 R/klcompreg.boot.R | 3 R/lasso.compreg.R | 2 R/lassocoef.plot.R | 2 R/lcreg.aov.R | 2 R/makefolds.R | 2 R/mixnorm.contour.R | 143 ++++++++++++++++++++++++++--- R/mkde.tune.R | 1 R/multinompcr.tune.R | 3 R/multivreg.R | 5 - R/multivt.R | 4 R/norm.contour.R | 152 +++++++++++++++++++++++++++---- R/ols.compreg.R | 3 R/pcr.R | 7 + R/pcr.tune.R | 3 R/perturbation.R | 1 R/pivotinv.R | 2 R/rcompnorm.R | 2 R/rcompt.R | 4 R/rda.R | 2 R/rda.tune.R | 3 R/rfolded.R | 1 R/ridge.plot.R | 2 R/ridge.reg.R | 2 R/ridge.tune.R | 3 R/skewnorm.contour.R | 161 +++++++++++++++++++++++++++------ R/sym.test.R | 2 R/symkl.compreg.R | 5 - R/ternary.R | 50 +++++++++- R/ternary.reg.R | 1 R/tv.compreg.R | 13 ++ R/unitweib.reg.R | 1 R/zad.est.R |only R/zadr.R | 5 + man/Compositional-package.Rd | 12 +- man/acor.Rd | 10 +- man/ait.Rd |only man/aitdist.Rd |only man/alfa.contour.Rd | 14 +- man/beta.est.Rd | 2 man/bivt.contour.Rd | 29 +++-- man/comp.kerncontour.Rd | 26 +++-- man/comp.knn.Rd | 14 ++ man/compknn.tune.Rd | 18 +++ man/diri.contour.Rd | 19 ++- man/diri.est.Rd | 8 - man/diri.nr.Rd | 6 - man/diri.reg.Rd | 2 man/fd.contour.Rd | 25 ++--- man/fold.contour.Rd | 18 ++- man/kent.contour.Rd | 22 +++- man/makefolds.Rd | 4 man/mixnorm.contour.Rd | 20 ++-- man/norm.contour.Rd | 23 ++-- man/ols.prop.reg.Rd | 2 man/perturbation.Rd | 4 man/pivot.Rd | 2 man/pow.Rd | 4 man/propreg.Rd | 4 man/skewnorm.contour.Rd | 26 +++-- man/ternary.Rd | 34 ++++-- man/zad.est.Rd |only man/zadr.Rd | 10 +- 110 files changed, 1865 insertions(+), 482 deletions(-)
Title: R Interface to 'Mapbox' Web Services
Description: Includes support for 'Mapbox' Navigation APIs, including directions,
isochrones, and route optimization; the Search API for forward and reverse geocoding;
the Maps API for interacting with 'Mapbox' vector tilesets and visualizing
'Mapbox' maps in R; and the 'tippecanoe' tile-generation utility.
See <https://docs.mapbox.com/api/> for more information about the 'Mapbox' APIs.
Author: Kyle Walker [aut, cre]
Maintainer: Kyle Walker <kyle@walker-data.com>
Diff between mapboxapi versions 0.2 dated 2020-10-05 and 0.3 dated 2021-11-08
DESCRIPTION | 13 +- MD5 | 15 +- NAMESPACE | 13 ++ R/mapboxapi-package.R | 4 R/maps.R | 262 +++++++++++++++++++++++++++++++++++++++++++++++- R/tippecanoe.R | 6 - README.md | 10 + man/get_static_tiles.Rd |only man/static_mapbox.Rd | 3 9 files changed, 307 insertions(+), 19 deletions(-)
Title: log Normal Linear Regression
Description: Functions to fits simple linear regression models with log normal errors
and identity link, i.e. taking the responses on the original scale. See
Muggeo (2018) <doi:10.13140/RG.2.2.18118.16965>.
Author: Vito M. R. Muggeo [aut, cre] (<https://orcid.org/0000-0002-3386-4054>)
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between logNormReg versions 0.4-0 dated 2021-10-12 and 0.5-0 dated 2021-11-08
DESCRIPTION | 9 +- MD5 | 24 ++++--- NAMESPACE | 38 +++++------ NEWS | 28 +++++--- R/extractAIC.lognlm.R | 14 ++-- R/lognlm.R | 145 +++++++++++++++++++++---------------------- R/print.summary.lognlm.R | 17 +++-- R/summary.lognlm.R | 19 +++++ build/partial.rdb |binary data |only man/logLik.lognlm.Rd | 154 +++++++++++++++++++++++----------------------- man/logNormReg-package.Rd | 4 - man/palermo.Rd |only man/paris.Rd |only 14 files changed, 245 insertions(+), 207 deletions(-)
Title: Process GPX Files into R Data Structures
Description: Process open standard GPX files into data.frames for further use and analysis in R.
Author: Mark Ewing [aut, cre]
Maintainer: Mark Ewing <b.mark@ewingsonline.com>
Diff between gpx versions 1.0.1 dated 2021-10-29 and 1.1.0 dated 2021-11-08
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 6 +++--- R/helpers.R | 30 ++++++++++++++++++++++++++++++ R/read_gpx.R | 17 ++++++++++++++--- man/read_gpx.Rd | 13 +++++++++++-- tests/testthat/test-gpx.R | 8 ++++++-- 7 files changed, 73 insertions(+), 19 deletions(-)
Title: Statistical Tools for the Analysis of Psychophysical Data
Description: Tools for the analysis of psychophysical data in R. This package allows to estimate the Point of Subjective Equivalence (PSE)
and the Just Noticeable Difference (JND), either from a psychometric function or from a Generalized Linear Mixed Model (GLMM).
Additionally, the package allows plotting the fitted models and the response data, simulating psychometric functions of different shapes, and simulating data sets.
For a description of the use of GLMMs applied to psychophysical data, refer to Moscatelli et al. (2012).
Author: Alessandro Moscatelli [aut, cre]
(<https://orcid.org/0000-0001-6269-4536>),
Priscilla Balestrucci [aut] (<https://orcid.org/0000-0002-5764-9439>)
Maintainer: Alessandro Moscatelli <moskante@gmail.com>
Diff between MixedPsy versions 1.0.0 dated 2017-11-16 and 1.1.0 dated 2021-11-08
MixedPsy-1.0.0/MixedPsy/R/GLMMplot.R |only MixedPsy-1.0.0/MixedPsy/R/MixDelta.R |only MixedPsy-1.0.0/MixedPsy/R/MixPlot.R |only MixedPsy-1.0.0/MixedPsy/R/MixTreatment.R |only MixedPsy-1.0.0/MixedPsy/R/pseMer.R |only MixedPsy-1.0.0/MixedPsy/man/MixTreatment.Rd |only MixedPsy-1.1.0/MixedPsy/DESCRIPTION | 21 - MixedPsy-1.1.0/MixedPsy/MD5 | 48 +-- MixedPsy-1.1.0/MixedPsy/NAMESPACE | 7 MixedPsy-1.1.0/MixedPsy/NEWS.md |only MixedPsy-1.1.0/MixedPsy/R/PsySimulate.R | 140 ++++------ MixedPsy-1.1.0/MixedPsy/R/data.R | 39 +- MixedPsy-1.1.0/MixedPsy/R/mix_utils.R |only MixedPsy-1.1.0/MixedPsy/R/psych_utils.R | 342 +++++++++++++++----------- MixedPsy-1.1.0/MixedPsy/R/xplode.R | 331 +++++++++---------------- MixedPsy-1.1.0/MixedPsy/R/zzz.R |only MixedPsy-1.1.0/MixedPsy/README.md | 8 MixedPsy-1.1.0/MixedPsy/data/simul_data.RData |binary MixedPsy-1.1.0/MixedPsy/inst/CITATION | 4 MixedPsy-1.1.0/MixedPsy/man/MixDelta.Rd | 68 ++--- MixedPsy-1.1.0/MixedPsy/man/MixPlot.Rd | 65 ++-- MixedPsy-1.1.0/MixedPsy/man/PsySimulate.Rd | 54 ++-- MixedPsy-1.1.0/MixedPsy/man/PsychDelta.Rd | 48 +-- MixedPsy-1.1.0/MixedPsy/man/PsychFunction.Rd | 76 ++--- MixedPsy-1.1.0/MixedPsy/man/PsychPlot.Rd |only MixedPsy-1.1.0/MixedPsy/man/PsychShape.Rd | 50 ++- MixedPsy-1.1.0/MixedPsy/man/pseMer.Rd | 99 +++---- MixedPsy-1.1.0/MixedPsy/man/simul_data.Rd | 23 - MixedPsy-1.1.0/MixedPsy/man/vibro_exp3.Rd | 24 - MixedPsy-1.1.0/MixedPsy/man/xplode.Rd | 37 -- 30 files changed, 717 insertions(+), 767 deletions(-)
Title: Retrieve ESPN Fantasy Football Data
Description: Format the raw data from the ESPN fantasy football API
<https://fantasy.espn.com/apis/v3/games/ffl/> as data frames.
Retrieve data on public leagues, rosters, athletes, and matches.
Author: Kiernan Nicholls [aut, cre, cph]
Maintainer: Kiernan Nicholls <kiernann@protonmail.com>
Diff between fflr versions 1.9.2 dated 2021-10-05 and 2.0.0 dated 2021-11-08
fflr-1.9.2/fflr/R/schedule.R |only fflr-1.9.2/fflr/man/ffl_week.Rd |only fflr-1.9.2/fflr/man/ffl_year.Rd |only fflr-1.9.2/fflr/man/tidy_matchups.Rd |only fflr-2.0.0/fflr/DESCRIPTION | 6 fflr-2.0.0/fflr/MD5 | 173 ++++----- fflr-2.0.0/fflr/NAMESPACE | 6 fflr-2.0.0/fflr/NEWS.md | 138 ++----- fflr-2.0.0/fflr/R/abbrev.R |only fflr-2.0.0/fflr/R/acquire.R | 3 fflr-2.0.0/fflr/R/activity.R | 46 +- fflr-2.0.0/fflr/R/api.R | 29 - fflr-2.0.0/fflr/R/best.R |only fflr-2.0.0/fflr/R/combine.R |only fflr-2.0.0/fflr/R/corrections.R | 5 fflr-2.0.0/fflr/R/data.R | 17 fflr-2.0.0/fflr/R/draft.R | 54 +- fflr-2.0.0/fflr/R/id.R | 2 fflr-2.0.0/fflr/R/info.R | 27 - fflr-2.0.0/fflr/R/live.R | 35 + fflr-2.0.0/fflr/R/matchup.R |only fflr-2.0.0/fflr/R/members.R | 11 fflr-2.0.0/fflr/R/messages.R | 13 fflr-2.0.0/fflr/R/news.R | 1 fflr-2.0.0/fflr/R/opponents.R | 1 fflr-2.0.0/fflr/R/outlook.R | 5 fflr-2.0.0/fflr/R/players.R | 365 ++++++++++++++++--- fflr-2.0.0/fflr/R/predraft.R |only fflr-2.0.0/fflr/R/pro-events.R | 1 fflr-2.0.0/fflr/R/pro-schedule.R | 8 fflr-2.0.0/fflr/R/roster.R | 87 +++- fflr-2.0.0/fflr/R/scores.R | 80 +++- fflr-2.0.0/fflr/R/settings.R | 31 - fflr-2.0.0/fflr/R/standings.R | 5 fflr-2.0.0/fflr/R/status.R | 1 fflr-2.0.0/fflr/R/sysdata.rda |binary fflr-2.0.0/fflr/R/teams.R | 45 +- fflr-2.0.0/fflr/R/transactions.R | 13 fflr-2.0.0/fflr/R/utils.R | 89 ++-- fflr-2.0.0/fflr/README.md | 68 ++- fflr-2.0.0/fflr/build/vignette.rds |binary fflr-2.0.0/fflr/data/nfl_schedule.rda |binary fflr-2.0.0/fflr/inst/WORDLIST | 11 fflr-2.0.0/fflr/inst/doc/fantasy-football.R | 2 fflr-2.0.0/fflr/inst/doc/fantasy-football.Rmd | 2 fflr-2.0.0/fflr/inst/doc/fantasy-football.html | 440 ++++++++++++------------ fflr-2.0.0/fflr/man/acquisition_settings.Rd | 10 fflr-2.0.0/fflr/man/all_players.Rd | 28 - fflr-2.0.0/fflr/man/best_roster.Rd |only fflr-2.0.0/fflr/man/combine_history.Rd |only fflr-2.0.0/fflr/man/draft_recap.Rd | 17 fflr-2.0.0/fflr/man/draft_settings.Rd | 10 fflr-2.0.0/fflr/man/espn_games.Rd | 6 fflr-2.0.0/fflr/man/ffl_api.Rd | 10 fflr-2.0.0/fflr/man/ffl_id.Rd | 2 fflr-2.0.0/fflr/man/ffl_info.Rd | 22 + fflr-2.0.0/fflr/man/ffl_seasons.Rd | 6 fflr-2.0.0/fflr/man/finance_settings.Rd | 10 fflr-2.0.0/fflr/man/league_info.Rd | 9 fflr-2.0.0/fflr/man/league_members.Rd | 17 fflr-2.0.0/fflr/man/league_messages.Rd | 16 fflr-2.0.0/fflr/man/league_name.Rd | 9 fflr-2.0.0/fflr/man/league_simulation.Rd | 5 fflr-2.0.0/fflr/man/league_size.Rd | 10 fflr-2.0.0/fflr/man/league_standings.Rd | 16 fflr-2.0.0/fflr/man/league_status.Rd | 16 fflr-2.0.0/fflr/man/league_teams.Rd | 21 - fflr-2.0.0/fflr/man/list_players.Rd |only fflr-2.0.0/fflr/man/live_scoring.Rd | 10 fflr-2.0.0/fflr/man/nfl_schedule.Rd | 11 fflr-2.0.0/fflr/man/nfl_teams.Rd | 6 fflr-2.0.0/fflr/man/player_acquire.Rd | 5 fflr-2.0.0/fflr/man/player_info.Rd | 10 fflr-2.0.0/fflr/man/player_news.Rd | 10 fflr-2.0.0/fflr/man/player_outlook.Rd | 10 fflr-2.0.0/fflr/man/pro_events.Rd | 5 fflr-2.0.0/fflr/man/pro_schedule.Rd | 5 fflr-2.0.0/fflr/man/recent_activity.Rd | 36 + fflr-2.0.0/fflr/man/roster_score.Rd | 11 fflr-2.0.0/fflr/man/roster_settings.Rd | 10 fflr-2.0.0/fflr/man/schedule_settings.Rd | 10 fflr-2.0.0/fflr/man/scoring_settings.Rd | 10 fflr-2.0.0/fflr/man/start_roster.Rd | 7 fflr-2.0.0/fflr/man/team_abbrev.Rd | 10 fflr-2.0.0/fflr/man/team_roster.Rd | 23 + fflr-2.0.0/fflr/man/tidy_schedule.Rd |only fflr-2.0.0/fflr/man/tidy_scores.Rd | 31 + fflr-2.0.0/fflr/man/trade_settings.Rd | 10 fflr-2.0.0/fflr/man/transaction_counter.Rd | 28 + fflr-2.0.0/fflr/tests/spelling.R | 10 fflr-2.0.0/fflr/tests/testthat/test-abbrev.R |only fflr-2.0.0/fflr/tests/testthat/test-players.R |only fflr-2.0.0/fflr/tests/testthat/test-roster.R | 2 fflr-2.0.0/fflr/tests/testthat/test-scores.R |only fflr-2.0.0/fflr/tests/testthat/test-standings.R |only fflr-2.0.0/fflr/vignettes/fantasy-football.Rmd | 2 96 files changed, 1444 insertions(+), 888 deletions(-)
Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, encryption,
enterprise authentication, and GridFS. The online user manual provides an overview
of the available methods in the package: <https://jeroen.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
MongoDB, Inc [cph] (Bundled mongo-c-driver, see AUTHORS file)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between mongolite versions 2.3.1 dated 2021-04-30 and 2.4.0 dated 2021-11-08
mongolite-2.3.1/mongolite/src/mongoc/mongoc-collection-be47088b.o.tmp |only mongolite-2.3.1/mongolite/tools |only mongolite-2.4.0/mongolite/DESCRIPTION | 6 mongolite-2.4.0/mongolite/MD5 | 304 + mongolite-2.4.0/mongolite/NEWS | 6 mongolite-2.4.0/mongolite/R/mongo.R | 4 mongolite-2.4.0/mongolite/cleanup | 2 mongolite-2.4.0/mongolite/configure | 63 mongolite-2.4.0/mongolite/inst/WORDLIST | 29 mongolite-2.4.0/mongolite/man/mongo.Rd | 4 mongolite-2.4.0/mongolite/src/Makevars.in | 8 mongolite-2.4.0/mongolite/src/Makevars.win | 31 mongolite-2.4.0/mongolite/src/bson/bcon.c | 4 mongolite-2.4.0/mongolite/src/bson/bson-atomic.c | 22 mongolite-2.4.0/mongolite/src/bson/bson-atomic.h | 16 mongolite-2.4.0/mongolite/src/bson/bson-clock.c | 2 mongolite-2.4.0/mongolite/src/bson/bson-config.h | 1 mongolite-2.4.0/mongolite/src/bson/bson-context.c | 6 mongolite-2.4.0/mongolite/src/bson/bson-decimal128.c | 2 mongolite-2.4.0/mongolite/src/bson/bson-json-private.h |only mongolite-2.4.0/mongolite/src/bson/bson-json.c | 188 - mongolite-2.4.0/mongolite/src/bson/bson-json.h | 26 mongolite-2.4.0/mongolite/src/bson/bson-macros.h | 12 mongolite-2.4.0/mongolite/src/bson/bson-md5.c | 6 mongolite-2.4.0/mongolite/src/bson/bson-types.h | 14 mongolite-2.4.0/mongolite/src/bson/bson-utf8.c | 2 mongolite-2.4.0/mongolite/src/bson/bson-version.h | 6 mongolite-2.4.0/mongolite/src/bson/bson.c | 300 + mongolite-2.4.0/mongolite/src/bson/bson.h | 27 mongolite-2.4.0/mongolite/src/client.c | 12 mongolite-2.4.0/mongolite/src/common/common-b64-private.h | 37 mongolite-2.4.0/mongolite/src/common/common-b64.c | 53 mongolite-2.4.0/mongolite/src/common/common-config.h |only mongolite-2.4.0/mongolite/src/common/common-macros-private.h |only mongolite-2.4.0/mongolite/src/common/common-md5-private.h | 11 mongolite-2.4.0/mongolite/src/common/common-md5.c | 16 mongolite-2.4.0/mongolite/src/common/common-prelude.h | 7 mongolite-2.4.0/mongolite/src/common/common-thread-private.h | 79 mongolite-2.4.0/mongolite/src/common/common-thread.c |only mongolite-2.4.0/mongolite/src/mongo_log.c | 11 mongolite-2.4.0/mongolite/src/mongoc/mongoc-apm-private.h | 26 mongolite-2.4.0/mongolite/src/mongoc/mongoc-apm.c | 245 + mongolite-2.4.0/mongolite/src/mongoc/mongoc-apm.h | 18 mongolite-2.4.0/mongolite/src/mongoc/mongoc-async-cmd-private.h | 2 mongolite-2.4.0/mongolite/src/mongoc/mongoc-async-cmd.c | 7 mongolite-2.4.0/mongolite/src/mongoc/mongoc-async.c | 2 mongolite-2.4.0/mongolite/src/mongoc/mongoc-buffer.c | 54 mongolite-2.4.0/mongolite/src/mongoc/mongoc-bulk-operation.c | 9 mongolite-2.4.0/mongolite/src/mongoc/mongoc-change-stream-private.h | 7 mongolite-2.4.0/mongolite/src/mongoc/mongoc-change-stream.c | 99 mongolite-2.4.0/mongolite/src/mongoc/mongoc-client-pool.c | 105 mongolite-2.4.0/mongolite/src/mongoc/mongoc-client-pool.h | 5 mongolite-2.4.0/mongolite/src/mongoc/mongoc-client-private.h | 54 mongolite-2.4.0/mongolite/src/mongoc/mongoc-client-session-private.h | 20 mongolite-2.4.0/mongolite/src/mongoc/mongoc-client-session.c | 250 + mongolite-2.4.0/mongolite/src/mongoc/mongoc-client-session.h | 9 mongolite-2.4.0/mongolite/src/mongoc/mongoc-client-side-encryption.c | 13 mongolite-2.4.0/mongolite/src/mongoc/mongoc-client.c | 430 +- mongolite-2.4.0/mongolite/src/mongoc/mongoc-client.h | 15 mongolite-2.4.0/mongolite/src/mongoc/mongoc-cluster-aws-private.h |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-cluster-aws.c |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-cluster-cyrus.c | 54 mongolite-2.4.0/mongolite/src/mongoc/mongoc-cluster-private.h | 42 mongolite-2.4.0/mongolite/src/mongoc/mongoc-cluster-sasl.c | 5 mongolite-2.4.0/mongolite/src/mongoc/mongoc-cluster-sspi.c | 22 mongolite-2.4.0/mongolite/src/mongoc/mongoc-cluster.c | 1563 ++++++---- mongolite-2.4.0/mongolite/src/mongoc/mongoc-cmd-private.h | 17 mongolite-2.4.0/mongolite/src/mongoc/mongoc-cmd.c | 147 mongolite-2.4.0/mongolite/src/mongoc/mongoc-collection-private.h | 12 mongolite-2.4.0/mongolite/src/mongoc/mongoc-collection.c | 613 ++- mongolite-2.4.0/mongolite/src/mongoc/mongoc-config.h | 55 mongolite-2.4.0/mongolite/src/mongoc/mongoc-crypt.c | 144 mongolite-2.4.0/mongolite/src/mongoc/mongoc-crypto-cng.c | 42 mongolite-2.4.0/mongolite/src/mongoc/mongoc-cursor-legacy.c | 18 mongolite-2.4.0/mongolite/src/mongoc/mongoc-cursor-private.h | 6 mongolite-2.4.0/mongolite/src/mongoc/mongoc-cursor.c | 54 mongolite-2.4.0/mongolite/src/mongoc/mongoc-cyrus-private.h | 4 mongolite-2.4.0/mongolite/src/mongoc/mongoc-cyrus.c | 82 mongolite-2.4.0/mongolite/src/mongoc/mongoc-database-private.h | 2 mongolite-2.4.0/mongolite/src/mongoc/mongoc-database.c | 70 mongolite-2.4.0/mongolite/src/mongoc/mongoc-error-private.h | 54 mongolite-2.4.0/mongolite/src/mongoc/mongoc-error.c | 249 + mongolite-2.4.0/mongolite/src/mongoc/mongoc-error.h | 13 mongolite-2.4.0/mongolite/src/mongoc/mongoc-find-and-modify.c | 5 mongolite-2.4.0/mongolite/src/mongoc/mongoc-flags-private.h |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-flags.h | 4 mongolite-2.4.0/mongolite/src/mongoc/mongoc-generation-map-private.h |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-generation-map.c |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-gridfs-bucket-file.c | 123 mongolite-2.4.0/mongolite/src/mongoc/mongoc-gridfs-bucket.c | 4 mongolite-2.4.0/mongolite/src/mongoc/mongoc-gridfs-file.c | 3 mongolite-2.4.0/mongolite/src/mongoc/mongoc-gridfs.c | 31 mongolite-2.4.0/mongolite/src/mongoc/mongoc-handshake-private.h | 8 mongolite-2.4.0/mongolite/src/mongoc/mongoc-handshake.c | 66 mongolite-2.4.0/mongolite/src/mongoc/mongoc-handshake.h | 2 mongolite-2.4.0/mongolite/src/mongoc/mongoc-host-list-private.h | 13 mongolite-2.4.0/mongolite/src/mongoc/mongoc-host-list.c | 75 mongolite-2.4.0/mongolite/src/mongoc/mongoc-http-private.h |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-http.c |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-init.c | 24 mongolite-2.4.0/mongolite/src/mongoc/mongoc-interrupt-private.h |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-interrupt.c |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-linux-distro-scanner.c | 3 mongolite-2.4.0/mongolite/src/mongoc/mongoc-log.c | 10 mongolite-2.4.0/mongolite/src/mongoc/mongoc-ocsp-cache-private.h |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-ocsp-cache.c |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-openssl-private.h | 20 mongolite-2.4.0/mongolite/src/mongoc/mongoc-openssl.c | 520 +++ mongolite-2.4.0/mongolite/src/mongoc/mongoc-optional.c |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-optional.h |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-opts-private.h | 30 mongolite-2.4.0/mongolite/src/mongoc/mongoc-opts.c | 192 + mongolite-2.4.0/mongolite/src/mongoc/mongoc-rand-cng.c | 4 mongolite-2.4.0/mongolite/src/mongoc/mongoc-rand-openssl.c | 12 mongolite-2.4.0/mongolite/src/mongoc/mongoc-read-prefs-private.h | 1 mongolite-2.4.0/mongolite/src/mongoc/mongoc-read-prefs.c | 81 mongolite-2.4.0/mongolite/src/mongoc/mongoc-read-prefs.h | 4 mongolite-2.4.0/mongolite/src/mongoc/mongoc-rpc-private.h | 5 mongolite-2.4.0/mongolite/src/mongoc/mongoc-rpc.c | 67 mongolite-2.4.0/mongolite/src/mongoc/mongoc-scram-private.h | 1 mongolite-2.4.0/mongolite/src/mongoc/mongoc-scram.c | 31 mongolite-2.4.0/mongolite/src/mongoc/mongoc-secure-channel.c | 42 mongolite-2.4.0/mongolite/src/mongoc/mongoc-secure-transport-private.h | 3 mongolite-2.4.0/mongolite/src/mongoc/mongoc-secure-transport.c | 9 mongolite-2.4.0/mongolite/src/mongoc/mongoc-server-api-private.h |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-server-api.c |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-server-api.h |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-server-description-private.h | 71 mongolite-2.4.0/mongolite/src/mongoc/mongoc-server-description.c | 362 ++ mongolite-2.4.0/mongolite/src/mongoc/mongoc-server-description.h | 7 mongolite-2.4.0/mongolite/src/mongoc/mongoc-server-monitor-private.h |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-server-monitor.c |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-socket.c | 15 mongolite-2.4.0/mongolite/src/mongoc/mongoc-ssl-private.h | 22 mongolite-2.4.0/mongolite/src/mongoc/mongoc-ssl.c | 48 mongolite-2.4.0/mongolite/src/mongoc/mongoc-ssl.h | 3 mongolite-2.4.0/mongolite/src/mongoc/mongoc-stream-tls-libressl.c | 11 mongolite-2.4.0/mongolite/src/mongoc/mongoc-stream-tls-openssl-private.h | 13 mongolite-2.4.0/mongolite/src/mongoc/mongoc-stream-tls-openssl.c | 88 mongolite-2.4.0/mongolite/src/mongoc/mongoc-stream-tls-secure-channel.c | 77 mongolite-2.4.0/mongolite/src/mongoc/mongoc-stream-tls-secure-transport.c | 238 + mongolite-2.4.0/mongolite/src/mongoc/mongoc-stream.c | 34 mongolite-2.4.0/mongolite/src/mongoc/mongoc-thread-private.h | 23 mongolite-2.4.0/mongolite/src/mongoc/mongoc-timeout-private.h |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-timeout.c |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-topology-background-monitoring-private.h |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-topology-background-monitoring.c |only mongolite-2.4.0/mongolite/src/mongoc/mongoc-topology-description-apm.c | 38 mongolite-2.4.0/mongolite/src/mongoc/mongoc-topology-description-private.h | 9 mongolite-2.4.0/mongolite/src/mongoc/mongoc-topology-description.c | 194 + mongolite-2.4.0/mongolite/src/mongoc/mongoc-topology-private.h | 136 mongolite-2.4.0/mongolite/src/mongoc/mongoc-topology-scanner-private.h | 55 mongolite-2.4.0/mongolite/src/mongoc/mongoc-topology-scanner.c | 335 +- mongolite-2.4.0/mongolite/src/mongoc/mongoc-topology.c | 1092 ++++-- mongolite-2.4.0/mongolite/src/mongoc/mongoc-trace-private.h | 22 mongolite-2.4.0/mongolite/src/mongoc/mongoc-uri-private.h | 31 mongolite-2.4.0/mongolite/src/mongoc/mongoc-uri.c | 365 +- mongolite-2.4.0/mongolite/src/mongoc/mongoc-uri.h | 7 mongolite-2.4.0/mongolite/src/mongoc/mongoc-util-private.h | 27 mongolite-2.4.0/mongolite/src/mongoc/mongoc-util.c | 82 mongolite-2.4.0/mongolite/src/mongoc/mongoc-version.h | 6 mongolite-2.4.0/mongolite/src/mongoc/mongoc-write-command-legacy.c | 79 mongolite-2.4.0/mongolite/src/mongoc/mongoc-write-command-private.h | 7 mongolite-2.4.0/mongolite/src/mongoc/mongoc-write-command.c | 72 mongolite-2.4.0/mongolite/src/mongoc/mongoc-write-concern.c | 2 mongolite-2.4.0/mongolite/src/mongoc/mongoc.h | 77 mongolite-2.4.0/mongolite/src/osx/Makevars | 5 167 files changed, 8101 insertions(+), 2900 deletions(-)
Title: Read Spectrometric Data and Metadata
Description: Parse various reflectance/transmittance/absorbance spectra file
formats to extract spectral data and metadata, as described in Gruson, White
& Maia (2019) <doi:10.21105/joss.01857>. Among other formats, it can import
files from 'Avantes' <https://www.avantes.com/>, 'CRAIC'
<https://www.microspectra.com/>, and 'OceanInsight' (formerly 'OceanOptics')
<https://www.oceaninsight.com/> brands.
Author: Hugo Gruson [cre, aut, cph] (<https://orcid.org/0000-0002-4094-1476>),
Rafael Maia [aut, cph] (<https://orcid.org/0000-0002-7563-9795>),
Thomas White [aut, cph] (<https://orcid.org/0000-0002-3976-1734>),
Kotya Karapetyan [ctb, cph] (Author of the MATLAB script to read
AvaSoft7 binary files (CC-BY))
Maintainer: Hugo Gruson <hugo.gruson+R@normalesup.org>
Diff between lightr versions 1.6.0 dated 2021-07-22 and 1.6.1 dated 2021-11-08
lightr-1.6.0/lightr/tests/testthat/compare_official.R |only lightr-1.6.0/lightr/tests/testthat/compare_photobiologyInOut.R |only lightr-1.6.1/lightr/DESCRIPTION | 8 - lightr-1.6.1/lightr/MD5 | 54 +++++----- lightr-1.6.1/lightr/NEWS.md | 6 + lightr-1.6.1/lightr/R/get_spec.R | 3 lightr-1.6.1/lightr/R/parse_avantes_binary.R | 37 ++++-- lightr-1.6.1/lightr/R/parse_avantes_converted.R | 15 ++ lightr-1.6.1/lightr/R/parse_generic.R | 18 ++- lightr-1.6.1/lightr/R/parse_jdx.R | 6 - lightr-1.6.1/lightr/R/parse_oceanoptics_converted.R | 36 ++++-- lightr-1.6.1/lightr/R/parse_procspec.R | 8 - lightr-1.6.1/lightr/R/parse_spc.R | 6 - lightr-1.6.1/lightr/build/partial.rdb |binary lightr-1.6.1/lightr/build/vignette.rds |binary lightr-1.6.1/lightr/inst/doc/batch_import.html | 4 lightr-1.6.1/lightr/inst/doc/renormalise.html | 4 lightr-1.6.1/lightr/inst/doc/true_example.html | 4 lightr-1.6.1/lightr/man/lr_get_spec.Rd | 3 lightr-1.6.1/lightr/man/lr_parse_generic.Rd | 18 ++- lightr-1.6.1/lightr/man/lr_parse_jaz.Rd | 29 +++-- lightr-1.6.1/lightr/man/lr_parse_jdx.Rd | 6 - lightr-1.6.1/lightr/man/lr_parse_procspec.Rd | 8 - lightr-1.6.1/lightr/man/lr_parse_spc.Rd | 6 - lightr-1.6.1/lightr/man/lr_parse_trm.Rd | 37 ++++-- lightr-1.6.1/lightr/man/lr_parse_ttt.Rd | 15 ++ lightr-1.6.1/lightr/tests/testthat/test_compare_official.R |only lightr-1.6.1/lightr/tests/testthat/test_compare_photobiologyInOut.R |only lightr-1.6.1/lightr/tests/testthat/test_dispatch.R | 1 lightr-1.6.1/lightr/tests/testthat/test_parsers.R | 2 30 files changed, 222 insertions(+), 112 deletions(-)
Title: Testing for Partial Copulas and the Simplifying Assumption in
Vine Copulas
Description: Routines for two different test types, the Constant Conditional Correlation (CCC) test and the Vectorial Independence (VI) test are provided (Kurz and Spanhel (2017) <arXiv:1706.02338>). The tests can be applied to check whether a conditional copula coincides with its partial copula. Functions to test whether a regular vine copula satisfies the so-called simplifying assumption or to test a single copula within a regular vine copula to be a (j-1)-th order partial copula are available. The CCC test comes with a decision tree approach to allow testing in high-dimensional settings.
Author: Malte S. Kurz [aut, cre]
Maintainer: Malte S. Kurz <malte.simon.kurz@uni-hamburg.de>
Diff between pacotest versions 0.4.0 dated 2020-12-15 and 0.4.1 dated 2021-11-08
pacotest-0.4.0/pacotest/src/EqualCov.cpp |only pacotest-0.4.1/pacotest/DESCRIPTION | 7 pacotest-0.4.1/pacotest/LICENSE | 2 pacotest-0.4.1/pacotest/MD5 | 59 +- pacotest-0.4.1/pacotest/NEWS.md | 6 pacotest-0.4.1/pacotest/R/RcppExports.R | 12 pacotest-0.4.1/pacotest/R/pacotest.R | 54 -- pacotest-0.4.1/pacotest/R/pacotestset.R | 253 +--------- pacotest-0.4.1/pacotest/R/utilitiesAggInfoInCondSet.R | 11 pacotest-0.4.1/pacotest/R/utilitiesRVineEqualCorrG.R | 86 --- pacotest-0.4.1/pacotest/R/utilitiesRVineEqualCorrOmega.R | 157 ------ pacotest-0.4.1/pacotest/R/utilitiesRVineEqualCorrWithEstimationUncertainty.R | 11 pacotest-0.4.1/pacotest/inst/include/pacotest.h | 25 pacotest-0.4.1/pacotest/man/pacotestset.Rd | 12 pacotest-0.4.1/pacotest/src/EqualCop.cpp | 4 pacotest-0.4.1/pacotest/src/EqualCorr.cpp | 90 +-- pacotest-0.4.1/pacotest/src/Grouping.cpp | 246 +++------ pacotest-0.4.1/pacotest/src/RcppExports.cpp | 40 - pacotest-0.4.1/pacotest/src/pacotestFunctions.cpp | 123 ---- pacotest-0.4.1/pacotest/src/pacotest_R_HelpingFunctions.cpp | 7 pacotest-0.4.1/pacotest/tests/testthat/hardCodedResEcorr.csv | 70 +- pacotest-0.4.1/pacotest/tests/testthat/hardCodedResEcorr_rversion_gt3_6_0.csv | 32 - pacotest-0.4.1/pacotest/tests/testthat/hardCodedResPacotestRvineSeq.csv | 30 - pacotest-0.4.1/pacotest/tests/testthat/hardCodedResPacotestRvineSeq_rversion_gt3_6_0.csv | 8 pacotest-0.4.1/pacotest/tests/testthat/hardCodedResPacotestRvineSingleCopula.csv | 128 ++--- pacotest-0.4.1/pacotest/tests/testthat/hardCodedResPacotestRvineSingleCopula_rversion_gt3_6_0.csv | 130 ++--- pacotest-0.4.1/pacotest/tests/testthat/helper-pacotestRegressionTests.R | 107 +--- pacotest-0.4.1/pacotest/tests/testthat/test-pacotestRegressionTests.R | 81 --- pacotest-0.4.1/pacotest/tests/testthat/test-pacotestRvineSeqRegressionTests.R | 18 pacotest-0.4.1/pacotest/tests/testthat/test-pacotestRvineSingleCopulaRegressionTests.R | 165 ------ pacotest-0.4.1/pacotest/tests/testthat/test_chi2Statistic.R | 24 31 files changed, 578 insertions(+), 1420 deletions(-)
Title: Data Preparation, Estimation and Prediction in Multi-State
Models
Description: Contains functions for data preparation, descriptives, hazard estimation and prediction with Aalen-Johansen or simulation in competing risks and multi-state models, see Putter, Fiocco, Geskus (2007) <doi:10.1002/sim.2712>.
Author: Hein Putter [aut, cre],
Liesbeth C. de Wreede [aut],
Marta Fiocco [aut],
Ronald B. Geskus [ctb],
Edouard F. Bonneville [aut],
Damjan Manevski [ctb]
Maintainer: Hein Putter <H.Putter@lumc.nl>
Diff between mstate versions 0.3.1 dated 2020-12-17 and 0.3.2 dated 2021-11-08
ChangeLog | 8 DESCRIPTION | 16 MD5 | 72 +-- NAMESPACE | 10 R/LMAJ.R | 35 + R/cuminc.R | 4 R/ggplot.Cuminc.R | 89 +--- R/ggplot.helpers.R | 14 R/ggplot.msfit.R | 154 +++++- R/ggplot.probtrans.R | 305 ++++++------- R/imports.R | 4 R/msprep.R | 6 R/plot.Cuminc.R | 26 - R/plot.msfit.R | 21 R/plot.probtrans.R | 9 R/probtrans.R | 78 +++ R/relsurv.haz_function.R |only R/relsurv.match.ratetable.R |only R/relsurv.msboot.relsurv.R |only R/relsurv.msboot.relsurv.boot.R |only R/relsurv.msfit.relsurv.R |only R/relsurv.rformulate.R |only R/relsurv.transMat.R |only R/relsurv.varHaz.fixed.R |only R/summary.msfit.R | 4 R/vis.mirror.pt.R | 140 ++---- R/vis.multiple.pt.R | 78 +-- build/vignette.rds |binary inst/CITATION | 1 inst/doc/Tutorial.pdf |binary inst/doc/visuals_demo.R | 29 + inst/doc/visuals_demo.Rmd | 37 + inst/doc/visuals_demo.html | 890 +++++++++++++++++----------------------- man/Cuminc.Rd | 13 man/haz_function.Rd |only man/modify_transMat.Rd |only man/msboot.relsurv.Rd |only man/msboot.relsurv.boot.Rd |only man/msfit.relsurv.Rd |only man/plot.msfit.Rd | 8 man/varHaz.fixed.Rd |only man/vis.mirror.pt.Rd | 2 man/vis.multiple.pt.Rd | 4 vignettes/visuals_demo.Rmd | 37 + 44 files changed, 1122 insertions(+), 972 deletions(-)
Title: Enabling Hierarchical Multiple Testing
Description: Implementation of hierarchical inference based on Meinshausen (2008).
Hierarchical testing of variable importance. Biometrika, 95(2), 265-278 and
Renaux, Buzdugan, Kalisch, and Bühlmann, (2020). Hierarchical inference for
genome-wide association studies: a view on methodology with software.
Computational Statistics, 35(1), 1-40.
The R-package 'hierbase' offers tools to perform hierarchical inference
for one or multiple data sets based on ready-to-use (group) test functions
or alternatively a user specified (group) test function.
The procedure is based on a hierarchical multiple testing
correction and controls the family-wise error rate (FWER).
The functions can easily be run in parallel.
Hierarchical inference can be applied to (low- or) high-dimensional
data sets to find significant groups or single variables (depending on
the signal strength and correlation structure) in a data-driven and
automated procedure. Possible applications can for example be found
in statistical genetics and statistical genomics.
Author: Claude Renaux [aut, cre],
Peter Bühlmann [ths]
Maintainer: Claude Renaux <renaux@stat.math.ethz.ch>
Diff between hierbase versions 0.1.1 dated 2021-11-03 and 0.1.2 dated 2021-11-08
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/test-functions.R | 4 ---- inst/doc/vignette-hierbase.pdf |binary 4 files changed, 6 insertions(+), 10 deletions(-)
Title: Tools for Choice Model Estimation and Application
Description: The Choice Modelling Centre (CMC) at the University of Leeds
has developed flexible code for the estimation and application
of choice models in R. Users are able to write their own
model functions or use a mix of already available ones. Random heterogeneity,
both continuous and discrete and at the level of individuals and
choices, can be incorporated for all models. There is support for both standalone
models and hybrid model structures. Both classical
and Bayesian estimation is available, and multiple discrete
continuous models are covered in addition to discrete choice.
Multi-threading processing is supported for estimation and a large
number of pre and post-estimation routines, including for computing posterior
(individual-level) distributions are available.
For examples, a manual, and a support forum, visit
<http://www.ApolloChoiceModelling.com>. For more information on choice
models see Train, K. (2009) <isbn:978-0-521-74738-7> and Hess,
S. & Daly, A.J. (2014) <isbn:978-1-781-00314-5> for an overview
of the field.
Author: Stephane Hess [aut],
David Palma [aut, cre],
Thomas Hancock [ctb]
Maintainer: David Palma <D.Palma@leeds.ac.uk>
Diff between apollo versions 0.2.5 dated 2021-07-31 and 0.2.6 dated 2021-11-08
DESCRIPTION | 8 MD5 | 186 ++++----- NAMESPACE | 1 R/apollo_attach.R | 4 R/apollo_basTest.R | 2 R/apollo_bootstrap.R | 6 R/apollo_choiceAnalysis.R | 15 R/apollo_classAlloc.R | 413 ++++++++++---------- R/apollo_cnl.R | 28 + R/apollo_combineResults.R | 93 +++- R/apollo_conditionals.R | 2 R/apollo_dft.R | 11 R/apollo_diagnostics.R | 51 +- R/apollo_el.R | 15 R/apollo_estimate.R | 181 +++++--- R/apollo_estimateHB.R | 797 +++++++++++++++++++-------------------- R/apollo_expandLoop.R | 34 + R/apollo_firstRow.R | 91 ++-- R/apollo_fitsTest.R | 2 R/apollo_fmnl.R | 25 + R/apollo_insertFunc.R | 21 - R/apollo_lc.R | 622 +++++++++++++++--------------- R/apollo_lcConditionals.R | 2 R/apollo_lcUnconditionals.R | 2 R/apollo_llCalc.R | 2 R/apollo_loadModel.R | 19 R/apollo_makeCluster.R | 2 R/apollo_makeLogLike.R | 59 +- R/apollo_mdcev.R | 13 R/apollo_mdcev2.R | 10 R/apollo_mdcnev.R | 19 R/apollo_mixEM.R | 2 R/apollo_mnl.R | 7 R/apollo_modeChoiceData.R | 86 ++-- R/apollo_modelOutput.R | 25 + R/apollo_nl.R | 28 + R/apollo_normalDensity.R | 448 +++++++++++---------- R/apollo_ol.R | 15 R/apollo_op.R | 15 R/apollo_outOfSample.R | 2 R/apollo_prediction.R | 604 +++++++++++++++-------------- R/apollo_preprocess.R | 5 R/apollo_saveOutput.R | 6 R/apollo_searchStart.R | 2 R/apollo_sharesTest.R | 4 R/apollo_sink.R |only R/apollo_speedTest.R | 2 R/apollo_unconditionals.R | 2 R/apollo_validate.R | 2 R/apollo_validateControl.R | 26 - R/apollo_validateInputs.R | 558 +++++++++++++-------------- R/apollo_varcov.R | 718 +++++++++++++++++------------------ R/apollo_writeTheta.R | 36 + R/onAttach.R | 15 build/vignette.rds |binary inst/doc/apollofirstexample.html | 258 +++++------- man/apollo_attach.Rd | 4 man/apollo_bootstrap.Rd | 2 man/apollo_classAlloc.Rd | 6 man/apollo_cnl.Rd | 2 man/apollo_conditionals.Rd | 2 man/apollo_dft.Rd | 2 man/apollo_el.Rd | 2 man/apollo_estimate.Rd | 14 man/apollo_estimateHB.Rd | 2 man/apollo_expandLoop.Rd | 4 man/apollo_fitsTest.Rd | 2 man/apollo_fmnl.Rd | 2 man/apollo_lc.Rd | 2 man/apollo_lcConditionals.Rd | 2 man/apollo_lcUnconditionals.Rd | 2 man/apollo_llCalc.Rd | 2 man/apollo_makeCluster.Rd | 2 man/apollo_makeLogLike.Rd | 2 man/apollo_mdcev.Rd | 2 man/apollo_mdcev2.Rd | 2 man/apollo_mdcnev.Rd | 2 man/apollo_mixEM.Rd | 2 man/apollo_mnl.Rd | 2 man/apollo_modeChoiceData.Rd | 4 man/apollo_nl.Rd | 2 man/apollo_normalDensity.Rd | 4 man/apollo_ol.Rd | 2 man/apollo_op.Rd | 2 man/apollo_outOfSample.Rd | 2 man/apollo_prediction.Rd | 2 man/apollo_searchStart.Rd | 2 man/apollo_sharesTest.Rd | 2 man/apollo_sink.Rd |only man/apollo_speedTest.Rd | 2 man/apollo_unconditionals.Rd | 2 man/apollo_validateControl.Rd | 1 man/apollo_validateInputs.Rd | 11 man/apollo_writeTheta.Rd | 2 src/RcppExports.cpp | 5 95 files changed, 3055 insertions(+), 2658 deletions(-)
Title: Edit an 'Antares' Simulation
Description: Edit an 'Antares' simulation before running it : create new areas, links, thermal
clusters or binding constraints or edit existing ones. Update 'Antares' general & optimization settings.
'Antares' is an open source power system generator, more information available here : <https://antares-simulator.org/>.
Author: Veronique Bachelier [aut, cre],
Frederic Breant [aut],
Victor Perrier [aut],
Baptiste Seguinot [ctb],
Benoit Thieurmel [ctb],
Titouan Robert [ctb],
Jalal-Edine Zawam [ctb],
Etienne Sanchez [ctb],
Janus De Bondt [ctb],
RTE [cph]
Maintainer: Veronique Bachelier <veronique.bachelier@rte-france.com>
Diff between antaresEditObject versions 0.2.2 dated 2021-06-21 and 0.3.0 dated 2021-11-08
antaresEditObject-0.2.2/antaresEditObject/man/createCluster.Rd |only antaresEditObject-0.2.2/antaresEditObject/man/editCluster.Rd |only antaresEditObject-0.2.2/antaresEditObject/man/removeCluster.Rd |only antaresEditObject-0.3.0/antaresEditObject/DESCRIPTION | 12 antaresEditObject-0.3.0/antaresEditObject/MD5 | 174 ++++--- antaresEditObject-0.3.0/antaresEditObject/NAMESPACE | 9 antaresEditObject-0.3.0/antaresEditObject/NEWS.md | 40 + antaresEditObject-0.3.0/antaresEditObject/R/RES.R |only antaresEditObject-0.3.0/antaresEditObject/R/copyOutput.R | 45 + antaresEditObject-0.3.0/antaresEditObject/R/createArea.R | 13 antaresEditObject-0.3.0/antaresEditObject/R/createCluster.R | 228 +++++++--- antaresEditObject-0.3.0/antaresEditObject/R/createDSR.R | 4 antaresEditObject-0.3.0/antaresEditObject/R/createLink.R | 36 - antaresEditObject-0.3.0/antaresEditObject/R/createPSP.R | 4 antaresEditObject-0.3.0/antaresEditObject/R/createStudy.R | 23 - antaresEditObject-0.3.0/antaresEditObject/R/editArea.R | 3 antaresEditObject-0.3.0/antaresEditObject/R/editCluster.R | 101 +++- antaresEditObject-0.3.0/antaresEditObject/R/editLink.R | 31 - antaresEditObject-0.3.0/antaresEditObject/R/removeArea.R | 6 antaresEditObject-0.3.0/antaresEditObject/R/removeCluster.R | 67 ++ antaresEditObject-0.3.0/antaresEditObject/R/scenarioBuilder.R | 150 +++++- antaresEditObject-0.3.0/antaresEditObject/R/updateGeneralSettings.R | 61 ++ antaresEditObject-0.3.0/antaresEditObject/R/updateInputSettings.R | 8 antaresEditObject-0.3.0/antaresEditObject/R/updateOptimizationSettings.R | 219 +++++---- antaresEditObject-0.3.0/antaresEditObject/R/utils.R |only antaresEditObject-0.3.0/antaresEditObject/R/writeAntaresOutput.R | 8 antaresEditObject-0.3.0/antaresEditObject/R/writeIni.R | 4 antaresEditObject-0.3.0/antaresEditObject/R/writeInputTS.R | 3 antaresEditObject-0.3.0/antaresEditObject/R/writeSeriesPrepro.R | 3 antaresEditObject-0.3.0/antaresEditObject/R/writeWaterValues.R | 13 antaresEditObject-0.3.0/antaresEditObject/R/zzz.R | 18 antaresEditObject-0.3.0/antaresEditObject/README.md | 8 antaresEditObject-0.3.0/antaresEditObject/build/vignette.rds |binary antaresEditObject-0.3.0/antaresEditObject/inst/doc/renewables-energy-sources.R |only antaresEditObject-0.3.0/antaresEditObject/inst/doc/renewables-energy-sources.Rmd |only antaresEditObject-0.3.0/antaresEditObject/inst/doc/renewables-energy-sources.html |only antaresEditObject-0.3.0/antaresEditObject/inst/doc/scenario-builder.R |only antaresEditObject-0.3.0/antaresEditObject/inst/doc/scenario-builder.Rmd |only antaresEditObject-0.3.0/antaresEditObject/inst/doc/scenario-builder.html |only antaresEditObject-0.3.0/antaresEditObject/inst/newStudy/input/areas/sets.ini | 12 antaresEditObject-0.3.0/antaresEditObject/inst/newStudy/input/hydro/prepro/correlation.ini | 6 antaresEditObject-0.3.0/antaresEditObject/inst/newStudy/input/load/prepro/correlation.ini | 6 antaresEditObject-0.3.0/antaresEditObject/inst/newStudy/input/solar/prepro/correlation.ini | 6 antaresEditObject-0.3.0/antaresEditObject/inst/newStudy/input/thermal/areas.ini | 6 antaresEditObject-0.3.0/antaresEditObject/inst/newStudy/input/wind/prepro/correlation.ini | 6 antaresEditObject-0.3.0/antaresEditObject/inst/newStudy/layers/layers.ini | 8 antaresEditObject-0.3.0/antaresEditObject/inst/newStudy/settings/comments.txt | 16 antaresEditObject-0.3.0/antaresEditObject/inst/newStudy/settings/generaldata.ini | 154 +++--- antaresEditObject-0.3.0/antaresEditObject/inst/newStudy/settings/scenariobuilder.dat | 4 antaresEditObject-0.3.0/antaresEditObject/man/activateRES.Rd |only antaresEditObject-0.3.0/antaresEditObject/man/backupStudy.Rd | 2 antaresEditObject-0.3.0/antaresEditObject/man/checkRemovedArea.Rd | 54 +- antaresEditObject-0.3.0/antaresEditObject/man/copyOutput.Rd | 12 antaresEditObject-0.3.0/antaresEditObject/man/create-cluster.Rd |only antaresEditObject-0.3.0/antaresEditObject/man/createArea.Rd | 102 ++-- antaresEditObject-0.3.0/antaresEditObject/man/createBindingConstraint.Rd | 114 ++--- antaresEditObject-0.3.0/antaresEditObject/man/createDSR.Rd | 2 antaresEditObject-0.3.0/antaresEditObject/man/createDistrict.Rd | 104 ++-- antaresEditObject-0.3.0/antaresEditObject/man/createLink.Rd | 23 - antaresEditObject-0.3.0/antaresEditObject/man/createPSP.Rd | 198 ++++---- antaresEditObject-0.3.0/antaresEditObject/man/createStudy.Rd | 4 antaresEditObject-0.3.0/antaresEditObject/man/dicoGeneralSettings.Rd | 40 - antaresEditObject-0.3.0/antaresEditObject/man/dicoOptimizationSettings.Rd | 40 - antaresEditObject-0.3.0/antaresEditObject/man/edit-cluster.Rd |only antaresEditObject-0.3.0/antaresEditObject/man/editLink.Rd | 27 - antaresEditObject-0.3.0/antaresEditObject/man/filteringOptions.Rd | 50 +- antaresEditObject-0.3.0/antaresEditObject/man/getPlaylist.Rd | 2 antaresEditObject-0.3.0/antaresEditObject/man/is_antares_v7.Rd | 56 +- antaresEditObject-0.3.0/antaresEditObject/man/nodalOptimizationOptions.Rd | 80 +-- antaresEditObject-0.3.0/antaresEditObject/man/propertiesLinkOptions.Rd | 6 antaresEditObject-0.3.0/antaresEditObject/man/remove-cluster.Rd |only antaresEditObject-0.3.0/antaresEditObject/man/removeArea.Rd | 50 +- antaresEditObject-0.3.0/antaresEditObject/man/removeBindingConstraint.Rd | 50 +- antaresEditObject-0.3.0/antaresEditObject/man/removeLink.Rd | 56 +- antaresEditObject-0.3.0/antaresEditObject/man/runSimulation.Rd | 6 antaresEditObject-0.3.0/antaresEditObject/man/runTsGenerator.Rd | 4 antaresEditObject-0.3.0/antaresEditObject/man/scenario-builder.Rd | 25 - antaresEditObject-0.3.0/antaresEditObject/man/setPlaylist.Rd | 2 antaresEditObject-0.3.0/antaresEditObject/man/setSolverPath.Rd | 2 antaresEditObject-0.3.0/antaresEditObject/man/updateGeneralSettings.Rd | 16 antaresEditObject-0.3.0/antaresEditObject/man/updateInputSettings.Rd | 2 antaresEditObject-0.3.0/antaresEditObject/man/updateOptimizationSettings.Rd | 3 antaresEditObject-0.3.0/antaresEditObject/man/updateOutputSettings.Rd | 80 +-- antaresEditObject-0.3.0/antaresEditObject/man/writeEconomicOptions.Rd | 86 +-- antaresEditObject-0.3.0/antaresEditObject/man/writeIni.Rd | 58 +- antaresEditObject-0.3.0/antaresEditObject/man/writeInputTS.Rd | 4 antaresEditObject-0.3.0/antaresEditObject/man/writeOutputValues.Rd | 7 antaresEditObject-0.3.0/antaresEditObject/man/writeSeriesPrepro.Rd | 110 ++-- antaresEditObject-0.3.0/antaresEditObject/man/writeWaterValues.Rd | 6 antaresEditObject-0.3.0/antaresEditObject/tests/testthat/test-RES.R |only antaresEditObject-0.3.0/antaresEditObject/tests/testthat/test-createCluster.R | 2 antaresEditObject-0.3.0/antaresEditObject/tests/testthat/test-createPSP.R | 2 antaresEditObject-0.3.0/antaresEditObject/tests/testthat/test-createStudy.R | 35 - antaresEditObject-0.3.0/antaresEditObject/tests/testthat/test-scenarioBuilder.R | 43 + antaresEditObject-0.3.0/antaresEditObject/tests/testthat/test-updateInputSettings.R | 8 antaresEditObject-0.3.0/antaresEditObject/vignettes/renewables-energy-sources.Rmd |only antaresEditObject-0.3.0/antaresEditObject/vignettes/scenario-builder.Rmd |only 97 files changed, 1797 insertions(+), 1291 deletions(-)
More information about antaresEditObject at CRAN
Permanent link
Title: Row by Row Data Processing Tool, Using 'DataSailr' Script
Description: A row by row data processing tool. You can write data processing code in 'DataSailr' script which is specially intended for data manipulation. The package uses 'libsailr' (C/C++ library) for its 'DataSailr' code parsing and its execution.
Author: Toshihiro Umehara [aut, cre],
Troy Hanson [cph, ctb] (uthash),
Howard Hinnant [cph, ctb] (date.h),
Adrian Colomitchi [cph, ctb] (date.h),
Florian Dang [cph, ctb] (date.h),
Paul Thompson [cph, ctb] (date.h),
Tomasz Kamiński [cph, ctb] (date.h),
Nemanja Trifunovic [cph, ctb] (utfcpp),
Kim Grasman [cph, ctb] (getopt_port),
Jon Clayden [cph, ctb] (ore package),
K.Kosako [cph, ctb] (onigmo author),
K.Takata [cph, ctb] (onigmo author),
Byte [cph, ctb] (onigmo contributor),
KUBO Takehiro [cph, ctb] (onigmo contributor),
Free Software Foundation, Inc [cph],
X Consortium [cph]
Maintainer: Toshihiro Umehara <toshi@niceume.com>
Diff between datasailr versions 0.8.9 dated 2021-08-25 and 0.8.10 dated 2021-11-08
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ configure | 18 +++++++++--------- configure.ac | 6 +++--- 5 files changed, 25 insertions(+), 20 deletions(-)
Title: Visualise Clusterings at Different Resolutions
Description: Deciding what resolution to use can be a difficult question when
approaching a clustering analysis. One way to approach this problem is to
look at how samples move as the number of clusters increases. This package
allows you to produce clustering trees, a visualisation for interrogating
clusterings as resolution increases.
Author: Luke Zappia [aut, cre] (<https://orcid.org/0000-0001-7744-8565>),
Alicia Oshlack [aut] (<https://orcid.org/0000-0001-9788-5690>),
Andrea Rau [ctb],
Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>)
Maintainer: Luke Zappia <luke@lazappi.id.au>
Diff between clustree versions 0.4.3 dated 2020-06-14 and 0.4.4 dated 2021-11-08
DESCRIPTION | 10 MD5 | 18 NEWS.md | 8 R/datasets.R | 2 README.md | 8 build/vignette.rds |binary inst/doc/clustree.html | 601 ++++++++++++--------------------- man/nba_clusts.Rd | 2 tests/testthat/test-clustree-overlay.R | 1 tests/testthat/test-clustree.R | 1 10 files changed, 256 insertions(+), 395 deletions(-)
Title: Expression Data Analysis and Visualization
Description: Gene Expression Omnibus(GEO) and The Cancer Genome Atlas(TCGA) are common bioinformatics public databases. We integrate the regular analysis and charts for expression data, to analyze and display the data concisely and intuitively.
Author: Xiaojie Sun [aut, cre]
Maintainer: Xiaojie Sun <18763899370@163.com>
Diff between tinyarray versions 2.2.6 dated 2021-09-14 and 2.2.7 dated 2021-11-08
DESCRIPTION | 11 ++-- MD5 | 10 ++-- R/10_survival_cut_cox_km.R | 7 ++ R/1_plots.R | 106 ++++++++++++++++++++++++++++++++------------- R/2_geo_id.R | 2 man/draw_heatmap.Rd | 6 ++ 6 files changed, 100 insertions(+), 42 deletions(-)
Title: High Dimensional Time Series Analysis Tools
Description: Procedures for high-dimensional time series analysis including factor analysis proposed by Lam and Yao (2012) <doi:10.1214/12-AOS970> and Chang, Guo and Yao (2015) <doi:10.1016/j.jeconom.2015.03.024>, martingale difference test proposed by Chang, Jiang and Shao (2021) preprint, principal component analysis proposed by Chang, Guo and Yao (2018) <doi:10.1214/17-AOS1613>, unit root test proposed by Chang, Cheng and Yao (2021) <arXiv:2006.07551> and white noise test proposed by Chang, Yao and Zhou (2017) <doi:10.1093/biomet/asw066>.
Author: Chen Lin [aut, cre],
Guanghui Cheng [aut],
Jinyuan Chang [aut],
Qiwei Yao [aut]
Maintainer: Chen Lin <linchen@smail.swufe.edu.cn>
Diff between HDTSA versions 1.0.0 dated 2021-06-04 and 1.0.1 dated 2021-11-08
DESCRIPTION | 8 - MD5 | 24 ++-- NAMESPACE | 1 R/HDSreg.R | 231 +++++++++++++++++++-------------------- R/Tools_martingale.R | 2 R/permutationFDR.R | 272 +++++++++++++++++++++++----------------------- R/segmentTS.R | 2 R/tools_wntest.R | 2 R/urtest.R | 10 + man/MartG_test.Rd | 2 man/WN_test.Rd | 2 src/ToolsC_martingale.cpp | 2 src/toolsC_wntest.cpp | 2 13 files changed, 283 insertions(+), 277 deletions(-)
More information about topicmodels.etm at CRAN
Permanent link
More information about RGremlinsConjoint at CRAN
Permanent link
Title: Sample Size Analysis for Psychological Networks and More
Description: An implementation of the sample size computation method for network
models proposed by Constantin et al. (2021) <doi:10.31234/osf.io/j5v7u>.
The implementation takes the form of a three-step recursive algorithm
designed to find an optimal sample size given a model specification and a
performance measure of interest. It starts with a Monte Carlo simulation
step for computing the performance measure and a statistic at various sample
sizes selected from an initial sample size range. It continues with a
monotone curve-fitting step for interpolating the statistic across the entire
sample size range. The final step employs stratified bootstrapping to quantify
the uncertainty around the fitted curve.
Author: Mihai Constantin [aut, cre] (<https://orcid.org/0000-0002-6460-0107>)
Maintainer: Mihai Constantin <mihai@mihaiconstantin.com>
Diff between powerly versions 1.5.2 dated 2021-09-30 and 1.7.1 dated 2021-11-08
DESCRIPTION | 12 MD5 | 57 ++- NAMESPACE | 53 +++ NEWS.md | 119 +++++++- R/GgmModel.R | 54 --- R/Method.R | 83 ++--- R/StepOne.R | 183 ++++++------ R/StepThree.R | 317 +++++++++++----------- R/StepTwo.R | 532 ++++++++++++++++++------------------- R/Validation.R | 166 +++++++---- R/exports.R | 377 -------------------------- R/logo.R | 2 R/powerly-package.R | 22 + README.md | 11 build/partial.rdb |binary inst/assets/logo/logo.txt | 4 man/figures/example-validation.png |binary man/plot.Method.Rd |only man/plot.StepOne.Rd |only man/plot.StepThree.Rd |only man/plot.StepTwo.Rd |only man/plot.Validation.Rd |only man/powerly-package.Rd | 2 man/powerly.Rd | 88 ++---- man/summary.Method.Rd | 8 man/summary.Validation.Rd | 12 man/validate.Rd | 26 - tests/testthat/helpers.R | 20 + tests/testthat/test-backend.R | 7 tests/testthat/test-basis.R | 5 tests/testthat/test-ggm.R | 76 ++++- tests/testthat/test-solver.R | 22 - 32 files changed, 1081 insertions(+), 1177 deletions(-)
Title: Extreme Gradient Boosting
Description: Extreme Gradient Boosting, which is an efficient implementation
of the gradient boosting framework from Chen & Guestrin (2016) <doi:10.1145/2939672.2939785>.
This package is its R interface. The package includes efficient linear
model solver and tree learning algorithms. The package can automatically
do parallel computation on a single machine which could be more than 10
times faster than existing gradient boosting packages. It supports
various objective functions, including regression, classification and ranking.
The package is made to be extensible, so that users are also allowed to define
their own objectives easily.
Author: Tianqi Chen [aut],
Tong He [aut, cre],
Michael Benesty [aut],
Vadim Khotilovich [aut],
Yuan Tang [aut] (<https://orcid.org/0000-0001-5243-233X>),
Hyunsu Cho [aut],
Kailong Chen [aut],
Rory Mitchell [aut],
Ignacio Cano [aut],
Tianyi Zhou [aut],
Mu Li [aut],
Junyuan Xie [aut],
Min Lin [aut],
Yifeng Geng [aut],
Yutian Li [aut],
XGBoost contributors [cph] (base XGBoost implementation)
Maintainer: Tong He <hetong007@gmail.com>
Diff between xgboost versions 1.4.1.1 dated 2021-04-22 and 1.5.0.1 dated 2021-11-08
xgboost-1.4.1.1/xgboost/src/rabit/src/c_api.cc |only xgboost-1.4.1.1/xgboost/src/src/CMakeLists.txt |only xgboost-1.4.1.1/xgboost/src/src/data/ellpack_page_source.cc |only xgboost-1.4.1.1/xgboost/src/src/data/sparse_page_source.cc |only xgboost-1.4.1.1/xgboost/src/src/tree/gpu_hist/driver.cuh |only xgboost-1.5.0.1/xgboost/DESCRIPTION | 12 xgboost-1.5.0.1/xgboost/MD5 | 372 +- xgboost-1.5.0.1/xgboost/NAMESPACE | 1 xgboost-1.5.0.1/xgboost/R/callbacks.R | 40 xgboost-1.5.0.1/xgboost/R/utils.R | 9 xgboost-1.5.0.1/xgboost/R/xgb.Booster.R | 205 + xgboost-1.5.0.1/xgboost/R/xgb.DMatrix.R | 19 xgboost-1.5.0.1/xgboost/R/xgb.cv.R | 4 xgboost-1.5.0.1/xgboost/R/xgb.importance.R | 66 xgboost-1.5.0.1/xgboost/R/xgb.plot.multi.trees.R | 57 xgboost-1.5.0.1/xgboost/R/xgb.plot.shap.R | 4 xgboost-1.5.0.1/xgboost/R/xgb.plot.tree.R | 32 xgboost-1.5.0.1/xgboost/R/xgb.train.R | 13 xgboost-1.5.0.1/xgboost/R/xgb.unserialize.R | 14 xgboost-1.5.0.1/xgboost/R/xgboost.R | 5 xgboost-1.5.0.1/xgboost/build/vignette.rds |binary xgboost-1.5.0.1/xgboost/cleanup | 1 xgboost-1.5.0.1/xgboost/demo/00Index | 6 xgboost-1.5.0.1/xgboost/demo/basic_walkthrough.R | 2 xgboost-1.5.0.1/xgboost/demo/create_sparse_matrix.R | 10 xgboost-1.5.0.1/xgboost/demo/cross_validation.R | 4 xgboost-1.5.0.1/xgboost/demo/custom_objective.R | 6 xgboost-1.5.0.1/xgboost/demo/early_stopping.R | 6 xgboost-1.5.0.1/xgboost/inst/doc/discoverYourData.R | 2 xgboost-1.5.0.1/xgboost/inst/doc/discoverYourData.Rmd | 28 xgboost-1.5.0.1/xgboost/inst/doc/discoverYourData.html | 81 xgboost-1.5.0.1/xgboost/inst/doc/xgboost.pdf |binary xgboost-1.5.0.1/xgboost/inst/doc/xgboostPresentation.Rmd | 20 xgboost-1.5.0.1/xgboost/inst/doc/xgboostPresentation.html | 73 xgboost-1.5.0.1/xgboost/inst/doc/xgboostfromJSON.Rmd | 6 xgboost-1.5.0.1/xgboost/inst/doc/xgboostfromJSON.html | 29 xgboost-1.5.0.1/xgboost/man/cb.early.stop.Rd | 3 xgboost-1.5.0.1/xgboost/man/cb.gblinear.history.Rd | 17 xgboost-1.5.0.1/xgboost/man/getinfo.Rd | 7 xgboost-1.5.0.1/xgboost/man/predict.xgb.Booster.Rd | 52 xgboost-1.5.0.1/xgboost/man/print.xgb.DMatrix.Rd | 3 xgboost-1.5.0.1/xgboost/man/setinfo.Rd | 7 xgboost-1.5.0.1/xgboost/man/slice.xgb.DMatrix.Rd | 3 xgboost-1.5.0.1/xgboost/man/xgb.DMatrix.Rd | 16 xgboost-1.5.0.1/xgboost/man/xgb.DMatrix.save.Rd | 3 xgboost-1.5.0.1/xgboost/man/xgb.create.features.Rd | 4 xgboost-1.5.0.1/xgboost/man/xgb.cv.Rd | 6 xgboost-1.5.0.1/xgboost/man/xgb.plot.shap.Rd | 2 xgboost-1.5.0.1/xgboost/man/xgb.train.Rd | 23 xgboost-1.5.0.1/xgboost/man/xgb.unserialize.Rd | 9 xgboost-1.5.0.1/xgboost/src/Makevars.in | 4 xgboost-1.5.0.1/xgboost/src/Makevars.win | 4 xgboost-1.5.0.1/xgboost/src/amalgamation/xgboost-all0.cc | 11 xgboost-1.5.0.1/xgboost/src/include/xgboost/base.h | 5 xgboost-1.5.0.1/xgboost/src/include/xgboost/c_api.h | 249 + xgboost-1.5.0.1/xgboost/src/include/xgboost/data.h | 93 xgboost-1.5.0.1/xgboost/src/include/xgboost/feature_map.h | 6 xgboost-1.5.0.1/xgboost/src/include/xgboost/gbm.h | 5 xgboost-1.5.0.1/xgboost/src/include/xgboost/generic_parameters.h | 28 xgboost-1.5.0.1/xgboost/src/include/xgboost/intrusive_ptr.h | 2 xgboost-1.5.0.1/xgboost/src/include/xgboost/json.h | 18 xgboost-1.5.0.1/xgboost/src/include/xgboost/learner.h | 12 xgboost-1.5.0.1/xgboost/src/include/xgboost/linalg.h |only xgboost-1.5.0.1/xgboost/src/include/xgboost/model.h | 8 xgboost-1.5.0.1/xgboost/src/include/xgboost/objective.h | 2 xgboost-1.5.0.1/xgboost/src/include/xgboost/predictor.h | 26 xgboost-1.5.0.1/xgboost/src/include/xgboost/span.h | 14 xgboost-1.5.0.1/xgboost/src/include/xgboost/tree_model.h | 78 xgboost-1.5.0.1/xgboost/src/include/xgboost/tree_updater.h | 11 xgboost-1.5.0.1/xgboost/src/include/xgboost/version_config.h | 4 xgboost-1.5.0.1/xgboost/src/init.c | 13 xgboost-1.5.0.1/xgboost/src/rabit/include/rabit/c_api.h | 8 xgboost-1.5.0.1/xgboost/src/rabit/include/rabit/internal/rabit-inl.h | 2 xgboost-1.5.0.1/xgboost/src/rabit/include/rabit/internal/socket.h | 2 xgboost-1.5.0.1/xgboost/src/rabit/src/allreduce_base.cc | 30 xgboost-1.5.0.1/xgboost/src/rabit/src/allreduce_base.h | 30 xgboost-1.5.0.1/xgboost/src/rabit/src/engine.cc | 2 xgboost-1.5.0.1/xgboost/src/rabit/src/engine_mpi.cc | 2 xgboost-1.5.0.1/xgboost/src/rabit/src/rabit_c_api.cc |only xgboost-1.5.0.1/xgboost/src/src/c_api/c_api.cc | 214 + xgboost-1.5.0.1/xgboost/src/src/c_api/c_api.cu | 41 xgboost-1.5.0.1/xgboost/src/src/c_api/c_api_error.h | 24 xgboost-1.5.0.1/xgboost/src/src/c_api/c_api_utils.h | 87 xgboost-1.5.0.1/xgboost/src/src/common/bitfield.h | 6 xgboost-1.5.0.1/xgboost/src/src/common/categorical.h | 6 xgboost-1.5.0.1/xgboost/src/src/common/charconv.cc | 4 xgboost-1.5.0.1/xgboost/src/src/common/column_matrix.h | 54 xgboost-1.5.0.1/xgboost/src/src/common/common.h | 2 xgboost-1.5.0.1/xgboost/src/src/common/device_helpers.cu | 14 xgboost-1.5.0.1/xgboost/src/src/common/device_helpers.cuh | 151 - xgboost-1.5.0.1/xgboost/src/src/common/hist_util.cc | 632 ----- xgboost-1.5.0.1/xgboost/src/src/common/hist_util.cu | 112 xgboost-1.5.0.1/xgboost/src/src/common/hist_util.cuh | 2 xgboost-1.5.0.1/xgboost/src/src/common/hist_util.h | 184 - xgboost-1.5.0.1/xgboost/src/src/common/host_device_vector.cu | 5 xgboost-1.5.0.1/xgboost/src/src/common/json.cc | 15 xgboost-1.5.0.1/xgboost/src/src/common/math.h | 6 xgboost-1.5.0.1/xgboost/src/src/common/partition_builder.h |only xgboost-1.5.0.1/xgboost/src/src/common/quantile.cc | 199 + xgboost-1.5.0.1/xgboost/src/src/common/quantile.cu | 54 xgboost-1.5.0.1/xgboost/src/src/common/quantile.cuh | 54 xgboost-1.5.0.1/xgboost/src/src/common/quantile.h | 15 xgboost-1.5.0.1/xgboost/src/src/common/ranking_utils.cuh | 2 xgboost-1.5.0.1/xgboost/src/src/common/row_set.h | 124 xgboost-1.5.0.1/xgboost/src/src/common/survival_util.h | 2 xgboost-1.5.0.1/xgboost/src/src/common/threading_utils.h | 120 xgboost-1.5.0.1/xgboost/src/src/common/timer.cc | 89 xgboost-1.5.0.1/xgboost/src/src/common/timer.h | 2 xgboost-1.5.0.1/xgboost/src/src/common/transform.h | 4 xgboost-1.5.0.1/xgboost/src/src/common/version.cc | 2 xgboost-1.5.0.1/xgboost/src/src/common/version.h | 2 xgboost-1.5.0.1/xgboost/src/src/data/adapter.h | 28 xgboost-1.5.0.1/xgboost/src/src/data/array_interface.h | 64 xgboost-1.5.0.1/xgboost/src/src/data/data.cc | 182 - xgboost-1.5.0.1/xgboost/src/src/data/data.cu | 50 xgboost-1.5.0.1/xgboost/src/src/data/device_adapter.cuh | 9 xgboost-1.5.0.1/xgboost/src/src/data/ellpack_page.cu | 100 xgboost-1.5.0.1/xgboost/src/src/data/ellpack_page.cuh | 48 xgboost-1.5.0.1/xgboost/src/src/data/ellpack_page_raw_format.cu | 39 xgboost-1.5.0.1/xgboost/src/src/data/ellpack_page_source.cu | 86 xgboost-1.5.0.1/xgboost/src/src/data/ellpack_page_source.h | 67 xgboost-1.5.0.1/xgboost/src/src/data/file_iterator.h |only xgboost-1.5.0.1/xgboost/src/src/data/gradient_index.cc |only xgboost-1.5.0.1/xgboost/src/src/data/gradient_index.h |only xgboost-1.5.0.1/xgboost/src/src/data/gradient_index_format.cc |only xgboost-1.5.0.1/xgboost/src/src/data/gradient_index_page_source.cc |only xgboost-1.5.0.1/xgboost/src/src/data/gradient_index_page_source.h |only xgboost-1.5.0.1/xgboost/src/src/data/histogram_cut_format.h |only xgboost-1.5.0.1/xgboost/src/src/data/iterative_device_dmatrix.cu | 37 xgboost-1.5.0.1/xgboost/src/src/data/iterative_device_dmatrix.h | 20 xgboost-1.5.0.1/xgboost/src/src/data/proxy_dmatrix.cc |only xgboost-1.5.0.1/xgboost/src/src/data/proxy_dmatrix.cu | 6 xgboost-1.5.0.1/xgboost/src/src/data/proxy_dmatrix.cuh |only xgboost-1.5.0.1/xgboost/src/src/data/proxy_dmatrix.h | 45 xgboost-1.5.0.1/xgboost/src/src/data/simple_batch_iterator.h | 22 xgboost-1.5.0.1/xgboost/src/src/data/simple_dmatrix.cc | 49 xgboost-1.5.0.1/xgboost/src/src/data/simple_dmatrix.cu | 72 xgboost-1.5.0.1/xgboost/src/src/data/simple_dmatrix.cuh |only xgboost-1.5.0.1/xgboost/src/src/data/simple_dmatrix.h | 14 xgboost-1.5.0.1/xgboost/src/src/data/sparse_page_dmatrix.cc | 196 + xgboost-1.5.0.1/xgboost/src/src/data/sparse_page_dmatrix.cu |only xgboost-1.5.0.1/xgboost/src/src/data/sparse_page_dmatrix.h | 127 - xgboost-1.5.0.1/xgboost/src/src/data/sparse_page_raw_format.cc | 72 xgboost-1.5.0.1/xgboost/src/src/data/sparse_page_source.cu |only xgboost-1.5.0.1/xgboost/src/src/data/sparse_page_source.h | 771 ++---- xgboost-1.5.0.1/xgboost/src/src/data/sparse_page_writer.h | 117 xgboost-1.5.0.1/xgboost/src/src/gbm/gblinear.cc | 42 xgboost-1.5.0.1/xgboost/src/src/gbm/gbtree.cc | 80 xgboost-1.5.0.1/xgboost/src/src/gbm/gbtree.cu | 21 xgboost-1.5.0.1/xgboost/src/src/gbm/gbtree.h | 72 xgboost-1.5.0.1/xgboost/src/src/gbm/gbtree_model.h | 12 xgboost-1.5.0.1/xgboost/src/src/learner.cc | 40 xgboost-1.5.0.1/xgboost/src/src/linear/updater_gpu_coordinate.cu | 10 xgboost-1.5.0.1/xgboost/src/src/metric/auc.cc | 25 xgboost-1.5.0.1/xgboost/src/src/metric/auc.cu | 134 - xgboost-1.5.0.1/xgboost/src/src/metric/auc.h | 3 xgboost-1.5.0.1/xgboost/src/src/metric/elementwise_metric.cu | 7 xgboost-1.5.0.1/xgboost/src/src/metric/rank_metric.cc | 6 xgboost-1.5.0.1/xgboost/src/src/metric/rank_metric.cu | 12 xgboost-1.5.0.1/xgboost/src/src/objective/aft_obj.cu | 2 xgboost-1.5.0.1/xgboost/src/src/objective/hinge.cu | 2 xgboost-1.5.0.1/xgboost/src/src/objective/multiclass_obj.cu | 25 xgboost-1.5.0.1/xgboost/src/src/objective/rank_obj.cu | 2 xgboost-1.5.0.1/xgboost/src/src/objective/regression_obj.cu | 67 xgboost-1.5.0.1/xgboost/src/src/predictor/cpu_predictor.cc | 204 + xgboost-1.5.0.1/xgboost/src/src/predictor/gpu_predictor.cu | 430 ++- xgboost-1.5.0.1/xgboost/src/src/predictor/predict_fn.h |only xgboost-1.5.0.1/xgboost/src/src/tree/constraints.h | 2 xgboost-1.5.0.1/xgboost/src/src/tree/driver.h |only xgboost-1.5.0.1/xgboost/src/src/tree/gpu_hist/evaluate_splits.cu | 4 xgboost-1.5.0.1/xgboost/src/src/tree/gpu_hist/expand_entry.cuh |only xgboost-1.5.0.1/xgboost/src/src/tree/gpu_hist/gradient_based_sampler.cu | 25 xgboost-1.5.0.1/xgboost/src/src/tree/gpu_hist/gradient_based_sampler.cuh | 32 xgboost-1.5.0.1/xgboost/src/src/tree/gpu_hist/histogram.cu | 180 - xgboost-1.5.0.1/xgboost/src/src/tree/gpu_hist/histogram.cuh | 50 xgboost-1.5.0.1/xgboost/src/src/tree/gpu_hist/row_partitioner.cu | 26 xgboost-1.5.0.1/xgboost/src/src/tree/gpu_hist/row_partitioner.cuh | 4 xgboost-1.5.0.1/xgboost/src/src/tree/hist |only xgboost-1.5.0.1/xgboost/src/src/tree/param.h | 11 xgboost-1.5.0.1/xgboost/src/src/tree/tree_model.cc | 248 + xgboost-1.5.0.1/xgboost/src/src/tree/updater_basemaker-inl.h | 4 xgboost-1.5.0.1/xgboost/src/src/tree/updater_colmaker.cc | 6 xgboost-1.5.0.1/xgboost/src/src/tree/updater_gpu_hist.cu | 137 - xgboost-1.5.0.1/xgboost/src/src/tree/updater_histmaker.cc | 4 xgboost-1.5.0.1/xgboost/src/src/tree/updater_quantile_hist.cc | 1263 +--------- xgboost-1.5.0.1/xgboost/src/src/tree/updater_quantile_hist.h | 478 +-- xgboost-1.5.0.1/xgboost/src/src/tree/updater_refresh.cc | 8 xgboost-1.5.0.1/xgboost/src/xgboost-win.def |only xgboost-1.5.0.1/xgboost/src/xgboost_R.cc | 180 + xgboost-1.5.0.1/xgboost/src/xgboost_R.h | 32 xgboost-1.5.0.1/xgboost/tests/testthat/test_basic.R | 86 xgboost-1.5.0.1/xgboost/tests/testthat/test_helpers.R | 42 xgboost-1.5.0.1/xgboost/tests/testthat/test_interactions.R | 44 xgboost-1.5.0.1/xgboost/tests/testthat/test_model_compatibility.R | 1 xgboost-1.5.0.1/xgboost/tests/testthat/test_monotone.R | 2 xgboost-1.5.0.1/xgboost/tests/testthat/test_poisson_regression.R | 4 xgboost-1.5.0.1/xgboost/vignettes/discoverYourData.Rmd | 28 xgboost-1.5.0.1/xgboost/vignettes/xgboostPresentation.Rmd | 20 xgboost-1.5.0.1/xgboost/vignettes/xgboostfromJSON.Rmd | 6 199 files changed, 5249 insertions(+), 5274 deletions(-)
Title: 115 Data Sets from "Introductory Econometrics: A Modern
Approach, 7e" by Jeffrey M. Wooldridge
Description: Students learning both econometrics and R may find the introduction
to both challenging. The wooldridge data package aims to lighten the task by efficiently
loading any data set found in the text with a single command. Data sets have been
compressed to a fraction of their original size. Documentation files contain page numbers,
the original source, time of publication, and notes from the author suggesting avenues for
further analysis and research. If one needs an introduction to R model syntax, a
vignette contains solutions to examples from chapters of the text.
Data sets are from the 7th edition (Wooldridge 2020, ISBN-13: 978-1-337-55886-0),
and are backwards compatible with all previous versions of the text.
Author: Justin M. Shea [aut, cre],
Kennth H. Brown [ctb]
Maintainer: Justin M. Shea <jshea@roosevelt.edu>
Diff between wooldridge versions 1.4-1 dated 2021-06-24 and 1.4-2 dated 2021-11-08
DESCRIPTION | 16 MD5 | 14 NEWS.md | 13 build/vignette.rds |binary inst/doc/Introductory-Econometrics-Examples.R | 162 +- inst/doc/Introductory-Econometrics-Examples.Rmd | 309 +--- inst/doc/Introductory-Econometrics-Examples.html | 1614 +---------------------- vignettes/Introductory-Econometrics-Examples.Rmd | 309 +--- 8 files changed, 416 insertions(+), 2021 deletions(-)
Title: Automatic Structural Time Series Models
Description: Automatic model selection for structural time series decomposition into trend, cycle, and seasonal components, plus optionality for structural interpolation, using the Kalman filter.
Koopman, Siem Jan and Marius Ooms (2012) "Forecasting Economic Time Series Using Unobserved Components Time Series Models" <doi:10.1093/oxfordhb/9780195398649.013.0006>.
Kim, Chang-Jin and Charles R. Nelson (1999) "State-Space Models with Regime Switching: Classical and Gibbs-Sampling Approaches with Applications" <doi:10.7551/mitpress/6444.001.0001><http://econ.korea.ac.kr/~cjkim/>.
Author: Alex Hubbard
Maintainer: Alex Hubbard <hubbard.alex@gmail.com>
Diff between autostsm versions 1.6 dated 2021-08-12 and 2.0 dated 2021-11-08
DESCRIPTION | 24 ++-- MD5 | 33 +++--- NAMESPACE | 1 R/stsm_dates_to_interpolate.R |only R/stsm_detect_anomalies.R | 2 R/stsm_detect_breaks.R | 2 R/stsm_estimate.R | 93 +++++++++++++++-- R/stsm_forecast.R | 202 +++++++++++++++++++++++++++++++-------- R/stsm_ssm.R | 66 ++++++++++++ build/vignette.rds |binary inst/doc/autostsm_vignette.R | 69 +++++++++++++ inst/doc/autostsm_vignette.Rmd | 103 +++++++++++++++++++ inst/doc/autostsm_vignette.html | 110 +++++++++++++++++++-- man/stsm_dates_to_interpolate.Rd |only man/stsm_estimate.Rd | 7 + man/stsm_filter.Rd |only man/stsm_forecast.Rd | 7 - man/stsm_ssm.Rd | 8 + vignettes/autostsm_vignette.Rmd | 103 +++++++++++++++++++ 19 files changed, 725 insertions(+), 105 deletions(-)
Title: Download, Explore, and Analyze Literary Theme Ontology Data
Description: Download, explore, and analyze Literary Theme Ontology themes
and thematically annotated story data. To learn more about the project
visit <https://github.com/theme-ontology/theming> and
<https://themeontology.org>.
Author: Paul Sheridan [aut, cre] (<https://orcid.org/0000-0002-5484-1951>),
Oshan Modi [aut],
Mikael Onsjö [aut]
Maintainer: Paul Sheridan <paul.sheridan.stats@gmail.com>
Diff between stoRy versions 0.1.5 dated 2020-06-11 and 0.2.0 dated 2021-11-08
stoRy-0.1.5/stoRy/R/checks.r |only stoRy-0.1.5/stoRy/R/data_help_files.r |only stoRy-0.1.5/stoRy/R/def_story.r |only stoRy-0.1.5/stoRy/R/def_storysets.r |only stoRy-0.1.5/stoRy/R/def_theme.r |only stoRy-0.1.5/stoRy/R/get_enriched_themes.r |only stoRy-0.1.5/stoRy/R/get_similar_stories.r |only stoRy-0.1.5/stoRy/R/helpers.r |only stoRy-0.1.5/stoRy/R/print_tree.r |only stoRy-0.1.5/stoRy/data |only stoRy-0.1.5/stoRy/inst/datasets |only stoRy-0.1.5/stoRy/inst/doc/vignette.R |only stoRy-0.1.5/stoRy/inst/doc/vignette.Rnw |only stoRy-0.1.5/stoRy/inst/doc/vignette.pdf |only stoRy-0.1.5/stoRy/inst/storysets |only stoRy-0.1.5/stoRy/man/print_tree.Rd |only stoRy-0.1.5/stoRy/man/story.Rd |only stoRy-0.1.5/stoRy/man/story_ids_by_theme.Rd |only stoRy-0.1.5/stoRy/man/story_keywords.Rd |only stoRy-0.1.5/stoRy/man/story_metadata.Rd |only stoRy-0.1.5/stoRy/man/story_settings.Rd |only stoRy-0.1.5/stoRy/man/story_themes.Rd |only stoRy-0.1.5/stoRy/man/storysets.Rd |only stoRy-0.1.5/stoRy/man/theme.Rd |only stoRy-0.1.5/stoRy/man/theme_dict.Rd |only stoRy-0.1.5/stoRy/vignettes/vignette-concordance.tex |only stoRy-0.1.5/stoRy/vignettes/vignette.Rnw |only stoRy-0.2.0/stoRy/DESCRIPTION | 52 +++-- stoRy-0.2.0/stoRy/MD5 | 122 +++++++----- stoRy-0.2.0/stoRy/NAMESPACE | 91 ++++++++- stoRy-0.2.0/stoRy/NEWS.md | 70 ++++--- stoRy-0.2.0/stoRy/R/clone-lto.R |only stoRy-0.2.0/stoRy/R/def_collection.R |only stoRy-0.2.0/stoRy/R/def_story.R |only stoRy-0.2.0/stoRy/R/def_theme.R |only stoRy-0.2.0/stoRy/R/def_themeset.R |only stoRy-0.2.0/stoRy/R/get_enriched_themes.R |only stoRy-0.2.0/stoRy/R/get_featured_themes.R |only stoRy-0.2.0/stoRy/R/get_similar_stories.R |only stoRy-0.2.0/stoRy/R/get_story_clusters.R |only stoRy-0.2.0/stoRy/R/lto-demo.R |only stoRy-0.2.0/stoRy/R/lto.R |only stoRy-0.2.0/stoRy/R/options.R |only stoRy-0.2.0/stoRy/R/set_active_version.R |only stoRy-0.2.0/stoRy/R/stoRy.R |only stoRy-0.2.0/stoRy/R/stoRy_cache.R |only stoRy-0.2.0/stoRy/R/sysdata.rda |binary stoRy-0.2.0/stoRy/R/text_formatting.R |only stoRy-0.2.0/stoRy/R/utils-errors.R |only stoRy-0.2.0/stoRy/R/utils-lto-file-parsing.R |only stoRy-0.2.0/stoRy/R/utils-lto.R |only stoRy-0.2.0/stoRy/R/utils-misc.R |only stoRy-0.2.0/stoRy/R/utils-stoRy_env.R |only stoRy-0.2.0/stoRy/R/zzz.R |only stoRy-0.2.0/stoRy/README.md |only stoRy-0.2.0/stoRy/build/partial.rdb |only stoRy-0.2.0/stoRy/build/vignette.rds |binary stoRy-0.2.0/stoRy/inst/CITATION |only stoRy-0.2.0/stoRy/inst/doc/stoRy.R |only stoRy-0.2.0/stoRy/inst/doc/stoRy.Rmd |only stoRy-0.2.0/stoRy/inst/doc/stoRy.html |only stoRy-0.2.0/stoRy/inst/extdata |only stoRy-0.2.0/stoRy/man/Collection.Rd |only stoRy-0.2.0/stoRy/man/Story.Rd |only stoRy-0.2.0/stoRy/man/Theme.Rd |only stoRy-0.2.0/stoRy/man/Themeset.Rd |only stoRy-0.2.0/stoRy/man/clone-lto.Rd |only stoRy-0.2.0/stoRy/man/fetch_lto_file.Rd |only stoRy-0.2.0/stoRy/man/figures |only stoRy-0.2.0/stoRy/man/generate_background_collection.Rd |only stoRy-0.2.0/stoRy/man/generate_collections_tbl.Rd |only stoRy-0.2.0/stoRy/man/generate_metadata_tbl.Rd |only stoRy-0.2.0/stoRy/man/generate_stories_tbl.Rd |only stoRy-0.2.0/stoRy/man/generate_themes_tbl.Rd |only stoRy-0.2.0/stoRy/man/get_enriched_themes.Rd | 154 ++++++++++------ stoRy-0.2.0/stoRy/man/get_featured_themes.Rd |only stoRy-0.2.0/stoRy/man/get_similar_stories.Rd | 125 +++++++++--- stoRy-0.2.0/stoRy/man/get_story_clusters.Rd |only stoRy-0.2.0/stoRy/man/lto-demo.Rd |only stoRy-0.2.0/stoRy/man/lto.Rd |only stoRy-0.2.0/stoRy/man/stoRy-package.Rd |only stoRy-0.2.0/stoRy/man/stoRy_cache.Rd |only stoRy-0.2.0/stoRy/man/stoRy_opt.Rd |only stoRy-0.2.0/stoRy/man/text_formatting.Rd |only stoRy-0.2.0/stoRy/tests |only stoRy-0.2.0/stoRy/vignettes/assets |only stoRy-0.2.0/stoRy/vignettes/stoRy.Rmd |only 87 files changed, 425 insertions(+), 189 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-10 2.0-2
2020-10-13 2.0-1
2020-09-07 2.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-13 3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-05 0.62.3
2018-11-30 0.62.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-05 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-20 1.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-11 0.0.8
2020-01-30 0.0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-04 1.0-7
2017-07-10 1.0-6
2016-06-06 1.0-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-05 0.9-3
2017-07-14 0.9-2
2017-03-14 0.9-1