Sun, 14 Nov 2021

Package ivdoctr (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-07-03 1.0.0

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Package circglmbayes (with last version 1.3.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-01-22 1.3.0

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Package bnpmr (with last version 1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-04-07 1.2
2013-05-03 1.1
2013-04-25 1.0

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Package admisc updated to version 0.20 with previous version 0.19 dated 2021-10-23

Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'declared', 'DDIwR', 'mixed', 'QCA' and 'venn'. Interprets and translates, factorizes and negates SOP - Sum of Products expressions, for both binary and multi-value crisp sets, and extracts information (set names, set values) from those expressions. Other functions perform various other checks if possibly numeric (even if all numbers reside in a character vector) and coerce to numeric, or check if the numbers are whole. It also offers, among many others, a highly flexible recoding routine.
Author: Adrian Dusa [aut, cre, cph] (<https://orcid.org/0000-0002-3525-9253>)
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>

Diff between admisc versions 0.19 dated 2021-10-23 and 0.20 dated 2021-11-14

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Package GeneNet updated to version 1.2.16 with previous version 1.2.15 dated 2020-06-14

Title: Modeling and Inferring Gene Networks
Description: Analyzes gene expression (time series) data with focus on the inference of gene networks. In particular, GeneNet implements the methods of Schaefer and Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006, 2007) for learning large-scale gene association networks (including assignment of putative directions).
Author: Juliane Schaefer, Rainer Opgen-Rhein, and Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>

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Package officer updated to version 0.4.1 with previous version 0.4.0 dated 2021-09-06

Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word' and 'Microsoft PowerPoint' documents from R. The package focuses on tabular and graphical reporting from R; it also provides two functions that let users get document content into data objects. A set of functions lets add and remove images, tables and paragraphs of text in new or existing documents. The package does not require any installation of Microsoft products to be able to write Microsoft files.
Author: David Gohel [aut, cre], Frank Hangler [ctb] (function body_replace_all_text), Liz Sander [ctb] (several documentation fixes), Anton Victorson [ctb] (fixes xml structures), Jon Calder [ctb] (update vignettes), John Harrold [ctb] (function annotate_base), John Muschelli [ctb] (google doc compatibility)
Maintainer: David Gohel <david.gohel@ardata.fr>

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Package cvms updated to version 1.3.3 with previous version 1.3.2 dated 2021-10-06

Title: Cross-Validation for Model Selection
Description: Cross-validate one or multiple regression and classification models and get relevant evaluation metrics in a tidy format. Validate the best model on a test set and compare it to a baseline evaluation. Alternatively, evaluate predictions from an external model. Currently supports regression and classification (binary and multiclass). Described in chp. 5 of Jeyaraman, B. P., Olsen, L. R., & Wambugu M. (2019, ISBN: 9781838550134).
Author: Ludvig Renbo Olsen [aut, cre], Hugh Benjamin Zachariae [aut], Indrajeet Patil [ctb] (<https://orcid.org/0000-0003-1995-6531>, @patilindrajeets)
Maintainer: Ludvig Renbo Olsen <r-pkgs@ludvigolsen.dk>

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Package copBasic updated to version 2.1.7 with previous version 2.1.6 dated 2021-09-02

Title: General Bivariate Copula Theory and Many Utility Functions
Description: Extensive functions for bivariate copula (bicopula) computations and related operations for bicopula theory. The lower, upper, product, and select other bicopula are implemented along with operations including the diagonal, survival copula, dual of a copula, co-copula, and numerical bicopula density. Level sets, horizontal and vertical sections are supported. Numerical derivatives and inverses of a bicopula are provided through which simulation is implemented. Bicopula composition, convex combination, and products also are provided. Support extends to the Kendall Function as well as the Lmoments thereof. Kendall Tau, Spearman Rho and Footrule, Gini Gamma, Blomqvist Beta, Hoeffding Phi, Schweizer- Wolff Sigma, tail dependency, tail order, skewness, and bivariate Lmoments are implemented, and positive/negative quadrant dependency, left (right) increasing (decreasing) are available. Other features include Kullback-Leibler divergence, Vuong procedure, spectral measure, and Lcomoments for inference, maximum likelihood, and AIC, BIC, and RMSE for goodness-of-fit.
Author: William Asquith
Maintainer: William Asquith <william.asquith@ttu.edu>

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Package sp updated to version 1.4-6 with previous version 1.4-5 dated 2021-01-10

Title: Classes and Methods for Spatial Data
Description: Classes and methods for spatial data; the classes document where the spatial location information resides, for 2D or 3D data. Utility functions are provided, e.g. for plotting data as maps, spatial selection, as well as methods for retrieving coordinates, for subsetting, print, summary, etc.
Author: Edzer Pebesma [aut, cre], Roger Bivand [aut], Barry Rowlingson [ctb], Virgilio Gomez-Rubio [ctb], Robert Hijmans [ctb], Michael Sumner [ctb], Don MacQueen [ctb], Jim Lemon [ctb], Finn Lindgren [ctb], Josh O'Brien [ctb], Joseph O'Rourke [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

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Package sf updated to version 1.0-4 with previous version 1.0-3 dated 2021-10-07

Title: Simple Features for R
Description: Support for simple features, a standardized way to encode spatial vector data. Binds to 'GDAL' for reading and writing data, to 'GEOS' for geometrical operations, and to 'PROJ' for projection conversions and datum transformations. Uses by default the 's2' package for spherical geometry operations on ellipsoidal (long/lat) coordinates.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>), Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>), Etienne Racine [ctb], Michael Sumner [ctb], Ian Cook [ctb], Tim Keitt [ctb], Robin Lovelace [ctb], Hadley Wickham [ctb], Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>), Kirill Müller [ctb], Thomas Lin Pedersen [ctb], Dan Baston [ctb], Dewey Dunnington [ctb] (<https://orcid.org/0000-0002-9415-4582>)
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>

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Package rrefine updated to version 2.0.0 with previous version 1.1.2 dated 2021-10-04

Title: r Client for OpenRefine API
Description: 'OpenRefine' (formerly 'Google Refine') is a popular, open source data cleaning software. This package enables users to programmatically trigger data transfer between R and 'OpenRefine'. Available functionality includes project import, export and deletion.
Author: VP Nagraj [aut, cre]
Maintainer: VP Nagraj <nagraj@nagraj.net>

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Package NutrienTrackeR updated to version 1.2.0 with previous version 1.1.0 dated 2021-03-14

Title: Food Composition Information and Dietary Assessment
Description: Provides a tool set for food information and dietary assessment. It uses food composition data from several reference databases, including: 'USDA' (United States), 'CIQUAL' (France), 'BEDCA' (Spain) and 'CNF' (Canada). 'NutrienTrackeR' calculates the intake levels for both macronutrient and micronutrients, and compares them with the recommended dietary allowances (RDA). It includes a number of visualization tools, such as time series plots of nutrient intake, and pie-charts showing the main foods contributing to the intake level of a given nutrient. A shiny app exposing the main functionalities of the package is also provided.
Author: Andrea Rodriguez-Martinez, Rafael Ayala, Mark Balchunas, Yacine Debbabi, Lara Selles Vidal
Maintainer: Rafael Ayala <rafael.ayala@oist.jp>

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Package crosstable updated to version 0.3.1 with previous version 0.2.2 dated 2021-10-19

Title: Crosstables for Descriptive Analyses
Description: Create descriptive tables for continuous and categorical variables. Apply summary statistics and counting function, with or without a grouping variable, and create beautiful reports using 'rmarkdown' or 'officer'. You can also compute statistical tests and effect sizes if needed.
Author: Dan Chaltiel [aut, cre] (<https://orcid.org/0000-0003-3488-779X>), David Hajage [ccp]
Maintainer: Dan Chaltiel <dan.chaltiel@gmail.com>

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Package Rsurrogate updated to version 3.1 with previous version 3.0 dated 2021-05-08

Title: Robust Estimation of the Proportion of Treatment Effect Explained by Surrogate Marker Information
Description: Provides functions to estimate the proportion of treatment effect on the primary outcome that is explained by the treatment effect on the surrogate marker.
Author: Layla Parast
Maintainer: Layla Parast <parast@austin.utexas.edu>

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Package metagam updated to version 0.3.1 with previous version 0.3.0 dated 2021-11-12

Title: Meta-Analysis of Generalized Additive Models
Description: Meta-analysis of generalized additive models and generalized additive mixed models. A typical use case is when data cannot be shared across locations, and an overall meta-analytic fit is sought. 'metagam' provides functionality for removing individual participant data from models computed using the 'mgcv' and 'gamm4' packages such that the model objects can be shared without exposing individual data. Furthermore, methods for meta-analysing these fits are provided. The implemented methods are described in Sorensen et al. (2020), <doi:10.1016/j.neuroimage.2020.117416>, extending previous works by Schwartz and Zanobetti (2000) and Crippa et al. (2018) <doi:10.6000/1929-6029.2018.07.02.1>.
Author: Oystein Sorensen [aut, cre] (<https://orcid.org/0000-0003-0724-3542>), Andreas M. Brandmaier [aut] (<https://orcid.org/0000-0001-8765-6982>), Athanasia Mo Mowinckel [aut] (<https://orcid.org/0000-0002-5756-0223>)
Maintainer: Oystein Sorensen <oystein.sorensen@psykologi.uio.no>

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Package FLightR (with last version 0.5.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-07-06 0.5.1

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Package rnetcarto (with last version 0.2.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-11-12 0.2.4
2015-11-11 0.2.3

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Package GeoLight (with last version 2.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2015-09-06 2.0.0

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Package cleanr updated to version 1.3.4 with previous version 1.3.3 dated 2021-08-03

Title: Helps You to Code Cleaner
Description: Check your R code for some of the most common layout flaws. Many tried to teach us how to write code less dreadful, be it implicitly as B. W. Kernighan and D. M. Ritchie (1988) <ISBN:0-13-110362-8> in 'The C Programming Language' did, be it explicitly as R.C. Martin (2008) <ISBN:0-13-235088-2> in 'Clean Code: A Handbook of Agile Software Craftsmanship' did. So we should check our code for files too long or wide, functions with too many lines, too wide lines, too many arguments or too many levels of nesting. Note: This is not a static code analyzer like pylint or the like. Checkout <https://cran.r-project.org/package=lintr> instead.
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>

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