Title: Sparse Arrays and Multivariate Polynomials
Description: Sparse arrays interpreted as multivariate polynomials.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between spray versions 1.0-11 dated 2021-02-14 and 1.0-16 dated 2021-11-16
DESCRIPTION | 8 +-- MD5 | 45 +++++++++++----------- NAMESPACE | 11 +++++ NEWS.md |only R/spray.R | 93 ++++++++++++++++++++++++++++++++-------------- R/spray_ops.R | 16 +++---- README.md | 63 ++++++++++++++++++------------- build/spray.pdf |binary build/vignette.rds |binary inst/doc/spray.R | 20 ++++----- inst/doc/spray.Rnw | 15 +++---- inst/doc/spray.pdf |binary man/as.array.Rd | 2 man/constant.Rd | 10 +++- man/figures |only man/homog.Rd | 2 man/knight.Rd | 2 man/pmax.Rd | 2 man/spray.Rd | 30 ++++++++++---- man/spraycross.Rd |only man/zap.Rd | 2 man/zero.Rd | 23 +++++++++++ src/spray_ops.cpp | 1 tests/testthat/test_aaa.R | 14 +++--- vignettes/spray.Rnw | 15 +++---- 25 files changed, 241 insertions(+), 133 deletions(-)
Title: Tidy Structural Equation Modeling
Description: A tidy workflow for generating, estimating, reporting,
and plotting structural equation models using 'lavaan', 'OpenMx', or
'Mplus'. Throughout this workflow, elements of syntax, results, and graphs
are represented as 'tidy' data, making them easy to customize.
Author: Caspar J. van Lissa [aut, cre]
(<https://orcid.org/0000-0002-0808-5024>)
Maintainer: Caspar J. van Lissa <c.j.vanlissa@uu.nl>
Diff between tidySEM versions 0.1.10 dated 2021-07-13 and 0.2.0 dated 2021-11-16
tidySEM |only 1 file changed
Title: A Simple HTTP Server to Serve Static Files or Dynamic Documents
Description: Start an HTTP server in R to serve static files, or dynamic
documents that can be converted to HTML files (e.g., R Markdown) under a
given directory.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Carson Sievert [ctb],
Jesse Anderson [ctb],
Ramnath Vaidyanathan [ctb],
Romain Lesur [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between servr versions 0.23 dated 2021-08-11 and 0.24 dated 2021-11-16
DESCRIPTION | 10 ++++++---- MD5 | 6 +++--- R/utils.R | 5 ++--- man/make.Rd | 4 ++-- 4 files changed, 13 insertions(+), 12 deletions(-)
Title: Network Analysis and Causal Inference Through Structural
Equation Modeling
Description: Estimate networks and causal relationships in complex systems through
Structural Equation Modeling. This package also includes functions to import,
weight, manipulate, and fit biological network models within the
Structural Equation Modeling framework described in
Palluzzi and Grassi (2021) <arXiv:2103.08332>.
Author: Mario Grassi [aut],
Fernando Palluzzi [aut, cre],
Daniele Pepe [ctb]
Maintainer: Fernando Palluzzi <fernando.palluzzi@gmail.com>
Diff between SEMgraph versions 1.0.3 dated 2021-07-08 and 1.0.4 dated 2021-11-16
SEMgraph-1.0.3/SEMgraph/R/semLatent.R |only SEMgraph-1.0.4/SEMgraph/DESCRIPTION | 14 +-- SEMgraph-1.0.4/SEMgraph/MD5 | 54 ++++++------ SEMgraph-1.0.4/SEMgraph/NEWS.md |only SEMgraph-1.0.4/SEMgraph/R/ALSdata.R | 4 SEMgraph-1.0.4/SEMgraph/R/keggInteractome.R | 11 +- SEMgraph-1.0.4/SEMgraph/R/keggPathways.R |only SEMgraph-1.0.4/SEMgraph/R/sachs.R | 12 +- SEMgraph-1.0.4/SEMgraph/R/semCluster.R |only SEMgraph-1.0.4/SEMgraph/R/semPaths.R | 14 +-- SEMgraph-1.0.4/SEMgraph/R/semUtils.R | 98 ++++++++++++----------- SEMgraph-1.0.4/SEMgraph/R/semWeights.R | 67 +++++++++++---- SEMgraph-1.0.4/SEMgraph/build/partial.rdb |binary SEMgraph-1.0.4/SEMgraph/data/kegg.RData |binary SEMgraph-1.0.4/SEMgraph/data/kegg.pathways.RData |only SEMgraph-1.0.4/SEMgraph/man/SEMgsa.Rd | 18 +--- SEMgraph-1.0.4/SEMgraph/man/SEMrun.Rd | 8 - SEMgraph-1.0.4/SEMgraph/man/activeModule.Rd | 10 +- SEMgraph-1.0.4/SEMgraph/man/alsData.Rd | 4 SEMgraph-1.0.4/SEMgraph/man/clusterGraph.Rd | 6 - SEMgraph-1.0.4/SEMgraph/man/clusterScore.Rd | 8 - SEMgraph-1.0.4/SEMgraph/man/cplot.Rd | 2 SEMgraph-1.0.4/SEMgraph/man/extendGraph.Rd | 17 +-- SEMgraph-1.0.4/SEMgraph/man/gplot.Rd | 2 SEMgraph-1.0.4/SEMgraph/man/kegg.Rd | 11 +- SEMgraph-1.0.4/SEMgraph/man/kegg.pathways.Rd |only SEMgraph-1.0.4/SEMgraph/man/mergeNodes.Rd | 2 SEMgraph-1.0.4/SEMgraph/man/modelSearch.Rd | 50 ++++++----- SEMgraph-1.0.4/SEMgraph/man/properties.Rd | 13 --- SEMgraph-1.0.4/SEMgraph/man/sachs.Rd | 10 +- SEMgraph-1.0.4/SEMgraph/man/weightGraph.Rd | 10 +- 31 files changed, 234 insertions(+), 211 deletions(-)
Title: Importing and Working with Track and Field Data
Description: Primarily used to convert human readable track and field results into dataframes for further analysis. Results can come from central repositories like <https://www.flashresults.com/> or <http://www.deltatiming.com/>, or from individual team sites, like those for colleges. Also contains functions useful for working with track and field data.
Author: Greg Pilgrim [aut, cre] (<https://orcid.org/0000-0001-7831-442X>),
George Perry [ctb]
Maintainer: Greg Pilgrim <gpilgrim2670@gmail.com>
Diff between JumpeR versions 0.1.4 dated 2021-03-07 and 0.3.0 dated 2021-11-16
JumpeR-0.1.4/JumpeR/R/attempts_split_long_helper.R |only JumpeR-0.1.4/JumpeR/R/flash_flight_attempts_parse.R |only JumpeR-0.1.4/JumpeR/R/flight_attempts_parse.R |only JumpeR-0.1.4/JumpeR/R/flights_parse.R |only JumpeR-0.1.4/JumpeR/R/math_format_helper.R |only JumpeR-0.1.4/JumpeR/R/metric_conversion_helper.R |only JumpeR-0.1.4/JumpeR/R/remove_unneeded_flights.R |only JumpeR-0.1.4/JumpeR/R/standard_conversion_helper.R |only JumpeR-0.1.4/JumpeR/man/attempts_split_long_helper.Rd |only JumpeR-0.1.4/JumpeR/man/flash_flight_attempts_parse.Rd |only JumpeR-0.1.4/JumpeR/man/flash_flights_parse.Rd |only JumpeR-0.1.4/JumpeR/man/flight_attempts_parse.Rd |only JumpeR-0.1.4/JumpeR/man/flights_parse.Rd |only JumpeR-0.1.4/JumpeR/man/remove_unneeded_flights.Rd |only JumpeR-0.1.4/JumpeR/tests/testthat/test-flash_parse_works.R |only JumpeR-0.1.4/JumpeR/tests/testthat/test-math_format_works.R |only JumpeR-0.1.4/JumpeR/tests/testthat/test-relay_athletes_works.R |only JumpeR-0.1.4/JumpeR/tests/testthat/test-tf_parse_works.R |only JumpeR-0.3.0/JumpeR/DESCRIPTION | 16 JumpeR-0.3.0/JumpeR/MD5 | 189 + JumpeR-0.3.0/JumpeR/NAMESPACE | 137 - JumpeR-0.3.0/JumpeR/NEWS.md | 73 JumpeR-0.3.0/JumpeR/R/add_row_numbers.R | 38 JumpeR-0.3.0/JumpeR/R/attempts_remove.R | 52 JumpeR-0.3.0/JumpeR/R/attempts_split.R | 137 - JumpeR-0.3.0/JumpeR/R/attempts_split_cols.R | 12 JumpeR-0.3.0/JumpeR/R/attempts_split_long.R | 206 +- JumpeR-0.3.0/JumpeR/R/collect_relay_athletes.R | 294 +- JumpeR-0.3.0/JumpeR/R/event_parse.R | 28 JumpeR-0.3.0/JumpeR/R/fill_down.R | 6 JumpeR-0.3.0/JumpeR/R/fill_left.R | 13 JumpeR-0.3.0/JumpeR/R/flash_clean_distance_events.R |only JumpeR-0.3.0/JumpeR/R/flash_clean_events.R |only JumpeR-0.3.0/JumpeR/R/flash_clean_horizontal_events.R |only JumpeR-0.3.0/JumpeR/R/flash_clean_relay_events.R |only JumpeR-0.3.0/JumpeR/R/flash_clean_sprint_events.R |only JumpeR-0.3.0/JumpeR/R/flash_clean_vertical_events.R |only JumpeR-0.3.0/JumpeR/R/flash_col_names.R |only JumpeR-0.3.0/JumpeR/R/flash_correct_column_overshoot.R |only JumpeR-0.3.0/JumpeR/R/flash_date_parse.R |only JumpeR-0.3.0/JumpeR/R/flash_event_links.R |only JumpeR-0.3.0/JumpeR/R/flash_event_parse.R |only JumpeR-0.3.0/JumpeR/R/flash_extract_details_links.R |only JumpeR-0.3.0/JumpeR/R/flash_flights_parse.R | 56 JumpeR-0.3.0/JumpeR/R/flash_gender_parse.R |only JumpeR-0.3.0/JumpeR/R/flash_parse.R | 138 - JumpeR-0.3.0/JumpeR/R/flash_parse_table.R |only JumpeR-0.3.0/JumpeR/R/flash_pivot_longer.R |only JumpeR-0.3.0/JumpeR/R/flash_rebuild_event_table.R |only JumpeR-0.3.0/JumpeR/R/flash_round_attempts_parse.R |only JumpeR-0.3.0/JumpeR/R/flash_wind_from_rounds.R |only JumpeR-0.3.0/JumpeR/R/flash_year_links.R |only JumpeR-0.3.0/JumpeR/R/globals.R | 133 - JumpeR-0.3.0/JumpeR/R/hytek_parse.R |only JumpeR-0.3.0/JumpeR/R/hytek_wind_parse.R |only JumpeR-0.3.0/JumpeR/R/is_link_broken.R | 9 JumpeR-0.3.0/JumpeR/R/lines_sort.R | 15 JumpeR-0.3.0/JumpeR/R/list_transform.R | 13 JumpeR-0.3.0/JumpeR/R/math_format.R | 50 JumpeR-0.3.0/JumpeR/R/metric_conversion.R | 44 JumpeR-0.3.0/JumpeR/R/read_results.R | 43 JumpeR-0.3.0/JumpeR/R/remove_duplicate_splits.R |only JumpeR-0.3.0/JumpeR/R/remove_unneeded_rounds.R |only JumpeR-0.3.0/JumpeR/R/round_attempts_parse.R |only JumpeR-0.3.0/JumpeR/R/rounds_parse.R |only JumpeR-0.3.0/JumpeR/R/splits_parse.R |only JumpeR-0.3.0/JumpeR/R/standard_conversion.R | 43 JumpeR-0.3.0/JumpeR/R/tf_parse.R | 981 +--------- JumpeR-0.3.0/JumpeR/README.md | 59 JumpeR-0.3.0/JumpeR/inst/CITATION | 6 JumpeR-0.3.0/JumpeR/inst/extdata/df_standard_longjump.rds |binary JumpeR-0.3.0/JumpeR/inst/extdata/df_standard_polevault.rds |binary JumpeR-0.3.0/JumpeR/inst/extdata/df_standard_polevault_hytek.rds |binary JumpeR-0.3.0/JumpeR/inst/extdata/df_standard_polevault_splits.rds |binary JumpeR-0.3.0/JumpeR/inst/extdata/df_standard_polevault_splits_double.rds |binary JumpeR-0.3.0/JumpeR/man/add_row_numbers.Rd | 9 JumpeR-0.3.0/JumpeR/man/attempts_remove.Rd | 9 JumpeR-0.3.0/JumpeR/man/attempts_split.Rd | 16 JumpeR-0.3.0/JumpeR/man/attempts_split_cols.Rd | 13 JumpeR-0.3.0/JumpeR/man/attempts_split_long.Rd | 24 JumpeR-0.3.0/JumpeR/man/collect_relay_athletes.Rd | 6 JumpeR-0.3.0/JumpeR/man/event_parse.Rd | 16 JumpeR-0.3.0/JumpeR/man/fill_down.Rd | 6 JumpeR-0.3.0/JumpeR/man/fill_left.Rd | 13 JumpeR-0.3.0/JumpeR/man/flash_attempts_split_long_helper.Rd |only JumpeR-0.3.0/JumpeR/man/flash_clean_distance_events.Rd |only JumpeR-0.3.0/JumpeR/man/flash_clean_events.Rd |only JumpeR-0.3.0/JumpeR/man/flash_clean_events_helper.Rd |only JumpeR-0.3.0/JumpeR/man/flash_clean_horizontal_events.Rd |only JumpeR-0.3.0/JumpeR/man/flash_clean_relay_events.Rd |only JumpeR-0.3.0/JumpeR/man/flash_clean_sprint_events.Rd |only JumpeR-0.3.0/JumpeR/man/flash_clean_vertical_events.Rd |only JumpeR-0.3.0/JumpeR/man/flash_col_names.Rd |only JumpeR-0.3.0/JumpeR/man/flash_col_names_helper.Rd |only JumpeR-0.3.0/JumpeR/man/flash_correct_column_overshoot.Rd |only JumpeR-0.3.0/JumpeR/man/flash_correct_column_overshoot_helper.Rd |only JumpeR-0.3.0/JumpeR/man/flash_date_parse.Rd |only JumpeR-0.3.0/JumpeR/man/flash_event_links.Rd |only JumpeR-0.3.0/JumpeR/man/flash_event_parse.Rd |only JumpeR-0.3.0/JumpeR/man/flash_extract_details_links.Rd |only JumpeR-0.3.0/JumpeR/man/flash_extract_details_links_helper.Rd |only JumpeR-0.3.0/JumpeR/man/flash_gender_parse.Rd |only JumpeR-0.3.0/JumpeR/man/flash_parse.Rd | 28 JumpeR-0.3.0/JumpeR/man/flash_parse_table.Rd |only JumpeR-0.3.0/JumpeR/man/flash_pivot_longer.Rd |only JumpeR-0.3.0/JumpeR/man/flash_rebuild_event_table.Rd |only JumpeR-0.3.0/JumpeR/man/flash_round_attempts_parse.Rd |only JumpeR-0.3.0/JumpeR/man/flash_rounds_parse.Rd |only JumpeR-0.3.0/JumpeR/man/flash_year_links.Rd |only JumpeR-0.3.0/JumpeR/man/hytek_attempts_split_long_helper.Rd |only JumpeR-0.3.0/JumpeR/man/hytek_parse.Rd |only JumpeR-0.3.0/JumpeR/man/is_link_broken.Rd | 8 JumpeR-0.3.0/JumpeR/man/lines_sort.Rd | 17 JumpeR-0.3.0/JumpeR/man/list_transform.Rd | 14 JumpeR-0.3.0/JumpeR/man/math_format.Rd | 13 JumpeR-0.3.0/JumpeR/man/math_format_helper.Rd | 11 JumpeR-0.3.0/JumpeR/man/metric_conversion.Rd | 12 JumpeR-0.3.0/JumpeR/man/metric_conversion_helper.Rd | 11 JumpeR-0.3.0/JumpeR/man/read_results.Rd | 18 JumpeR-0.3.0/JumpeR/man/remove_duplicate_splits.Rd |only JumpeR-0.3.0/JumpeR/man/remove_unneeded_rounds.Rd |only JumpeR-0.3.0/JumpeR/man/round_attempts_parse.Rd |only JumpeR-0.3.0/JumpeR/man/rounds_parse.Rd |only JumpeR-0.3.0/JumpeR/man/splits_parse.Rd |only JumpeR-0.3.0/JumpeR/man/standard_conversion.Rd | 12 JumpeR-0.3.0/JumpeR/man/standard_conversion_helper.Rd | 8 JumpeR-0.3.0/JumpeR/man/tf_parse.Rd | 80 JumpeR-0.3.0/JumpeR/man/wind_from_rounds.Rd |only JumpeR-0.3.0/JumpeR/man/wind_from_rounds_helper.Rd |only JumpeR-0.3.0/JumpeR/man/wind_parse_hytek.Rd |only JumpeR-0.3.0/JumpeR/tests/testthat.R | 1 JumpeR-0.3.0/JumpeR/tests/testthat/test-flash_parse.R |only JumpeR-0.3.0/JumpeR/tests/testthat/test-flash_table.R |only JumpeR-0.3.0/JumpeR/tests/testthat/test-flash_year_links.R |only JumpeR-0.3.0/JumpeR/tests/testthat/test-math_format.R |only JumpeR-0.3.0/JumpeR/tests/testthat/test-relay_athletes.R |only JumpeR-0.3.0/JumpeR/tests/testthat/test-splits.R |only JumpeR-0.3.0/JumpeR/tests/testthat/test-tf_parse.R |only 138 files changed, 1471 insertions(+), 1665 deletions(-)
Title: Port of the S+ "Robust Library"
Description: Methods for robust statistics, a state of the art in the early
2000s, notably for robust regression and robust multivariate analysis.
Author: Jiahui Wang,
Ruben Zamar <ruben@stat.ubc.ca>,
Alfio Marazzi <Alfio.Marazzi@inst.hospvd.ch>,
Victor Yohai <vyohai@dm.uba.ar>,
Matias Salibian-Barrera <matias@stat.ubc.ca>,
Ricardo Maronna <maron@mate.unlp.edu.ar>,
Eric Zivot <ezivot@u.washington.edu>,
David Rocke <dmrocke@ucdavis.edu>,
Doug Martin,
Martin Maechler <maechler@stat.math.ethz.ch>,
Kjell Konis <kjell.konis@me.com>.
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between robust versions 0.6-0 dated 2021-10-25 and 0.6-1 dated 2021-11-16
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 5 +++++ R/library.q | 4 ++-- man/OverlaidDenPlot.fdfm.Rd | 3 ++- src/compatibility.c | 3 ++- tests/Examples/robust-Ex.Rout.save | 16 +++++++++------- 7 files changed, 31 insertions(+), 22 deletions(-)
Title: Enhanced 'R Markdown' Format for 'Word' and 'PowerPoint'
Description: Allows production of 'Microsoft' corporate documents from 'R Markdown' by
reusing formatting defined in 'Microsoft Word' documents. You can reuse table styles,
list styles but also add column sections, landscape oriented pages. Table and image
captions as well as cross-references are transformed into 'Microsoft Word' fields,
allowing documents edition and merging without issue with references; the syntax
conforms to the 'bookdown' cross-reference definition. Objects generated by
the 'officer' package are also supported in the 'knitr' chunks.
'Microsoft PowerPoint' presentations also benefit from this as well as the
ability to produce editable vector graphics in 'PowerPoint' and also to
define placeholder where content is to be added.
Author: David Gohel [aut, cre, cph],
Institut für Qualitätssicherung und Transparenz im Gesundheitswesen
[fnd],
Noam Ross [aut] (rmarkdown implementation for rvg),
ArData [cph],
Martin Camitz [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officedown versions 0.2.2 dated 2021-04-05 and 0.2.3 dated 2021-11-16
DESCRIPTION | 12 +- MD5 | 26 ++-- NAMESPACE | 1 NEWS.md | 13 ++ R/hooks.R | 22 +++ R/knit_print_table.R | 6 - R/rdocx_document.R | 118 +++++++++++++++----- R/rdocx_post_knit.R | 26 ++-- R/utils.R | 7 - build/vignette.rds |binary inst/doc/overview.html | 212 ------------------------------------- inst/examples/bookdown/_output.yml | 5 inst/examples/officer.Rmd | 2 man/rdocx_document.Rd | 60 ++++++---- 14 files changed, 210 insertions(+), 300 deletions(-)
Title: Weighted Mixed-Effects Models Using Multilevel Pseudo Maximum
Likelihood Estimation
Description: Run mixed-effects models that include weights at every level. The WeMix package fits a weighted mixed model, also known as a multilevel, mixed, or hierarchical linear model (HLM). The weights could be inverse selection probabilities, such as those developed for an education survey where schools are sampled probabilistically, and then students inside of those schools are sampled probabilistically. Although mixed-effects models are already available in R, WeMix is unique in implementing methods for mixed models using weights at multiple levels. Both linear and logit models are supported. Models may have up to three levels.
Author: Emmanuel Sikali [pdr],
Paul Bailey [aut, cre],
Claire Kelley [aut],
Trang Nguyen [aut],
Huade Huo [aut],
Eric Buehler [ctb],
Christian Kjeldsen [ctb]
Maintainer: Paul Bailey <pbailey@air.org>
Diff between WeMix versions 3.1.9 dated 2021-10-20 and 3.2.0 dated 2021-11-16
DESCRIPTION | 10 MD5 | 24 - R/adaptiveQuad.R | 68 +++- R/analyticSolve.R | 74 ++-- R/covarianceConstructors.R | 1 R/helpers.R | 2 build/vignette.rds |binary inst/NEWS.Rd | 15 inst/doc/Introduction_to_Mixed_Effects_Models_With_WeMix.pdf |binary inst/doc/Weighted_Linear_Mixed_Effects_Models.pdf |binary man/mix.Rd | 2 tests/testthat/test-1-main.R | 179 +++++++---- tests/testthat_tests.R | 1 13 files changed, 254 insertions(+), 122 deletions(-)
Title: O-Stats, or Pairwise Community-Level Niche Overlap Statistics
Description: O-statistics, or overlap statistics, measure the degree of community-level trait overlap.
They are estimated by fitting nonparametric kernel density functions to each species’ trait
distribution and calculating their areas of overlap. For instance, the median pairwise overlap
for a community is calculated by first determining the overlap of each species pair
in trait space, and then taking the median overlap of each species pair in a community.
This median overlap value is called the O-statistic (O for overlap).
The Ostats() function calculates separate univariate overlap statistics for each trait,
while the Ostats_multivariate() function calculates a single multivariate overlap statistic for all traits.
O-statistics can be evaluated against null models to obtain standardized effect sizes.
'Ostats' is part of the collaborative Macrosystems Biodiversity Project "Local- to continental-scale
drivers of biodiversity across the National Ecological Observatory Network (NEON)."
For more information on this project, see the Macrosystems Biodiversity Website
(<https://neon-biodiversity.github.io/>). Calculation of O-statistics is described in
Read et al. (2018) <doi:10.1111/ecog.03641>, and a teaching module for introducing the
underlying biological concepts at an undergraduate level is described in Grady et al.
(2018) <http://tiee.esa.org/vol/v14/issues/figure_sets/grady/abstract.html>.
Author: Quentin D. Read [aut, cre],
Arya Yue [aut],
Isadora E. Fluck [aut],
Benjamin Baiser [aut],
John M. Grady [aut],
Phoebe L. Zarnetske [aut],
Sydne Record [aut]
Maintainer: Quentin D. Read <quentin.read@usda.gov>
Diff between Ostats versions 0.1.0 dated 2021-07-26 and 0.1.1 dated 2021-11-16
DESCRIPTION | 15 LICENSE | 4 MD5 | 82 - NAMESPACE | 16 R/Ostats.R | 491 +++++----- R/Ostats_multivariate.R | 428 ++++---- R/Ostats_multivariate_plot.R | 536 +++++------ R/Ostats_plot.R | 376 +++---- R/ant_data.R | 22 R/community_overlap.R | 302 +++--- R/get_ses.R | 94 - R/globals.R | 4 R/pairwise_overlap.R | 186 +-- R/pitcher_traits.R | 48 R/reg_pool.R | 20 R/small_mammal_Ostats.R | 14 R/small_mammal_data.R | 30 R/trait_density.R | 290 +++--- README.md | 116 +- build/vignette.rds |binary inst/doc/Ostats-introduction.R | 165 +-- inst/doc/Ostats-introduction.Rmd | 499 +++++----- inst/doc/Ostats-introduction.html | 1314 +++++++++++++-------------- inst/doc/Ostats-multivariate.R | 226 ++-- inst/doc/Ostats-multivariate.Rmd | 444 ++++----- inst/doc/Ostats-multivariate.html | 1443 ++++++++++++++---------------- man/Ostats.Rd | 343 +++---- man/Ostats_multivariate.Rd | 294 +++--- man/Ostats_multivariate_plot.Rd | 178 +-- man/Ostats_plot.Rd | 202 ++-- man/ant_data.Rd | 50 - man/community_overlap.Rd | 208 ++-- man/pitcher_traits.Rd | 74 - man/reg_pool.Rd | 46 man/small_mammal_Ostats.Rd | 40 man/small_mammal_data.Rd | 54 - tests/testthat.R | 8 tests/testthat/test-Ostats.R | 202 ++-- tests/testthat/test-Ostats_multivariate.R | 84 - tests/testthat/test-community_overlap.R | 76 - vignettes/Ostats-introduction.Rmd | 499 +++++----- vignettes/Ostats-multivariate.Rmd | 444 ++++----- 42 files changed, 4980 insertions(+), 4987 deletions(-)
Title: Landmark Prediction of a Survival Outcome
Description: Provides functions for landmark prediction of a survival outcome incorporating covariate and short-term event information. For more information about landmark prediction please see: Parast, Layla, Su-Chun Cheng, and Tianxi Cai. Incorporating short-term outcome information to predict long-term survival with discrete markers. Biometrical Journal 53.2 (2011): 294-307, <doi:10.1002/bimj.201000150>.
Author: Layla Parast
Maintainer: Layla Parast <parast@austin.utexas.edu>
Diff between landpred versions 1.0 dated 2014-10-18 and 1.1 dated 2021-11-16
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 3 ++- man/cumsum2.Rd | 5 +++-- man/landpred-package.Rd | 2 -- 5 files changed, 14 insertions(+), 14 deletions(-)
Title: Efficient Sequential and Batch Estimation of Univariate and
Bivariate Probability Density Functions and Cumulative
Distribution Functions along with Quantiles (Univariate) and
Spearman's Correlation (Bivariate)
Description: Facilitates estimation of full univariate and bivariate
probability density functions and cumulative distribution functions along with
full quantile functions (univariate) and nonparametric correlation
(bivariate) using Hermite series based estimators. These estimators are
particularly useful in the sequential setting (both stationary and
non-stationary) and one-pass batch estimation setting for large data sets.
Based on: Stephanou, Michael, Varughese, Melvin and Macdonald, Iain. "Sequential quantiles via Hermite series density estimation." Electronic Journal of Statistics 11.1 (2017): 570-607 <doi:10.1214/17-EJS1245>,
Stephanou, Michael and Varughese, Melvin. "On the properties of Hermite series based distribution function estimators." Metrika (2020) <doi:10.1007/s00184-020-00785-z> and Stephanou, Michael and Varughese, Melvin. "Sequential estimation of Spearman rank correlation using Hermite series estimators." Journal of Multivariate Analysis (2021) <doi:10.1016/j.jmva.2021.104783>.
Author: Michael Stephanou [aut, cre],
Melvin Varughese [ctb]
Maintainer: Michael Stephanou <michael.stephanou@gmail.com>
Diff between hermiter versions 2.0.3 dated 2021-02-17 and 2.1.0 dated 2021-11-16
DESCRIPTION | 12 MD5 | 72 ++-- NAMESPACE | 8 NEWS.md | 25 + R/hermite_estimator.R | 68 +++- R/hermite_estimator_bivar.R | 122 ++++++- R/hermite_estimator_univar.R | 254 +++++++++++---- R/sysdata.rda |binary R/utils.R | 56 +++ README.md | 125 ++++--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/hermiter.R | 78 ++-- inst/doc/hermiter.Rmd | 133 ++++---- inst/doc/hermiter.html | 432 ++++++++++++++------------ man/cum_prob.Rd | 5 man/cum_prob.hermite_estimator_bivar.Rd | 5 man/cum_prob.hermite_estimator_univar.Rd | 5 man/dens.Rd | 5 man/dens.hermite_estimator_bivar.Rd | 5 man/dens.hermite_estimator_univar.Rd | 5 man/hermite_estimator.Rd | 6 man/hermite_estimator_bivar.Rd | 4 man/hermite_estimator_univar.Rd | 4 man/kendall.Rd |only man/kendall.hermite_estimator_bivar.Rd |only man/print.hermite_estimator_bivar.Rd |only man/print.hermite_estimator_univar.Rd |only man/quant.Rd | 14 man/quant.hermite_estimator_univar.Rd | 14 man/summary.hermite_estimator_bivar.Rd |only man/summary.hermite_estimator_univar.Rd |only src/RcppExports.cpp | 5 src/hermite_utils.cpp | 134 ++++---- tests/testthat/test_hermite_estimator.R | 233 ++++++++++++-- tests/testthat/test_hermite_estimator_bivar.R | 227 ++++++++----- vignettes/cdf.gif |binary vignettes/hermiter.Rmd | 133 ++++---- vignettes/pdf.gif |binary vignettes/quant.gif |binary 40 files changed, 1492 insertions(+), 697 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data
management system with support for the Structured Query Language (SQL). This package includes all of
DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Mühleisen [aut, cre] (<https://orcid.org/0000-0001-8552-0029>),
Mark Raasveldt [aut] (<https://orcid.org/0000-0001-5005-6844>),
DuckDB Contributors [aut],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrochers [cph],
Victor Zverovich [cph],
RAD Game Tools [cph],
Valve Software [cph],
Rich Geldreich [cph],
Tenacious Software LLC [cph],
The RE2 Authors [cph],
Google Inc. [cph],
Facebook Inc. [cph],
Steven G. Johnson [cph],
Jiahao Chen [cph],
Tony Kelman [cph],
Jonas Fonseca [cph],
Lukas Fittl [cph],
Salvatore Sanfilippo [cph],
Art.sy, Inc. [cph],
Oran Agra [cph],
Redis Labs, Inc. [cph],
Melissa O'Neill [cph],
PCG Project contributors [cph]
Maintainer: Hannes Mühleisen <hannes@cwi.nl>
Diff between duckdb versions 0.3.0 dated 2021-10-08 and 0.3.1 dated 2021-11-16
duckdb-0.3.0/duckdb/src/duckdb/extension/extension_helper.hpp |only duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_sink.hpp |only duckdb-0.3.0/duckdb/src/duckdb/src/include/duckdb/parallel/task_context.hpp |only duckdb-0.3.0/duckdb/tests/testthat/userdata1.parquet |only duckdb-0.3.1/duckdb/DESCRIPTION | 6 duckdb-0.3.1/duckdb/MD5 | 902 duckdb-0.3.1/duckdb/NAMESPACE | 1 duckdb-0.3.1/duckdb/R/Connection.R | 70 duckdb-0.3.1/duckdb/R/Result.R | 5 duckdb-0.3.1/duckdb/R/register.R | 35 duckdb-0.3.1/duckdb/man/duckdb_register_arrow.Rd | 3 duckdb-0.3.1/duckdb/man/duckdb_result-class.Rd | 2 duckdb-0.3.1/duckdb/src/connection.cpp | 22 duckdb-0.3.1/duckdb/src/database.cpp | 28 duckdb-0.3.1/duckdb/src/duckdb/amalgamation-1.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/amalgamation-2.cpp | 8 duckdb-0.3.1/duckdb/src/duckdb/amalgamation-3.cpp | 12 duckdb-0.3.1/duckdb/src/duckdb/amalgamation-4.cpp | 12 duckdb-0.3.1/duckdb/src/duckdb/amalgamation-5.cpp | 24 duckdb-0.3.1/duckdb/src/duckdb/amalgamation-6.cpp | 16 duckdb-0.3.1/duckdb/src/duckdb/amalgamation-7.cpp | 12 duckdb-0.3.1/duckdb/src/duckdb/amalgamation-8.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/extension/parquet/include/parquet_reader.hpp | 21 duckdb-0.3.1/duckdb/src/duckdb/extension/parquet/parquet-extension.cpp | 75 duckdb-0.3.1/duckdb/src/duckdb/extension/parquet/parquet_metadata.cpp | 8 duckdb-0.3.1/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp | 36 duckdb-0.3.1/duckdb/src/duckdb/src/catalog/catalog.cpp | 29 duckdb-0.3.1/duckdb/src/duckdb/src/catalog/catalog_entry/schema_catalog_entry.cpp | 14 duckdb-0.3.1/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 7 duckdb-0.3.1/duckdb/src/duckdb/src/catalog/catalog_entry/type_catalog_entry.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/catalog/catalog_search_path.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/catalog/catalog_set.cpp | 47 duckdb-0.3.1/duckdb/src/duckdb/src/catalog/default/default_functions.cpp | 6 duckdb-0.3.1/duckdb/src/duckdb/src/catalog/dependency_manager.cpp | 47 duckdb-0.3.1/duckdb/src/duckdb/src/common/arrow_wrapper.cpp | 24 duckdb-0.3.1/duckdb/src/duckdb/src/common/enums/catalog_type.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/common/enums/compression_type.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/common/enums/expression_type.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/common/enums/logical_operator_type.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/common/enums/physical_operator_type.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/common/local_file_system.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/common/operator/cast_operators.cpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/common/printer.cpp | 1 duckdb-0.3.1/duckdb/src/duckdb/src/common/radix.cpp | 12 duckdb-0.3.1/duckdb/src/duckdb/src/common/sort/comparators.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/common/sort/radix_sort.cpp | 144 duckdb-0.3.1/duckdb/src/duckdb/src/common/sort/sort_state.cpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/common/tree_renderer.cpp | 100 duckdb-0.3.1/duckdb/src/duckdb/src/common/types.cpp | 267 duckdb-0.3.1/duckdb/src/duckdb/src/common/types/chunk_collection.cpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/common/types/data_chunk.cpp | 43 duckdb-0.3.1/duckdb/src/duckdb/src/common/types/hugeint.cpp | 38 duckdb-0.3.1/duckdb/src/duckdb/src/common/types/interval.cpp | 35 duckdb-0.3.1/duckdb/src/duckdb/src/common/types/value.cpp | 84 duckdb-0.3.1/duckdb/src/duckdb/src/common/types/vector.cpp | 39 duckdb-0.3.1/duckdb/src/duckdb/src/common/vector_operations/generators.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/common/vector_operations/vector_cast.cpp | 186 duckdb-0.3.1/duckdb/src/duckdb/src/common/vector_operations/vector_hash.cpp | 50 duckdb-0.3.1/duckdb/src/duckdb/src/execution/aggregate_hashtable.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/execution/expression_executor.cpp | 15 duckdb-0.3.1/duckdb/src/duckdb/src/execution/expression_executor/execute_case.cpp | 187 duckdb-0.3.1/duckdb/src/duckdb/src/execution/expression_executor/execute_operator.cpp | 51 duckdb-0.3.1/duckdb/src/duckdb/src/execution/join_hashtable.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/aggregate/physical_hash_aggregate.cpp | 402 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/aggregate/physical_perfecthash_aggregate.cpp | 45 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/aggregate/physical_simple_aggregate.cpp | 91 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/aggregate/physical_window.cpp | 301 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/filter/physical_filter.cpp | 64 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/helper/physical_execute.cpp | 16 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/helper/physical_limit.cpp | 142 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/helper/physical_load.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/helper/physical_pragma.cpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/helper/physical_prepare.cpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/helper/physical_reservoir_sample.cpp | 29 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/helper/physical_set.cpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/helper/physical_streaming_sample.cpp | 54 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/helper/physical_transaction.cpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/helper/physical_vacuum.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/join/perfect_hash_join_executor.cpp | 173 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/join/physical_blockwise_nl_join.cpp | 200 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/join/physical_cross_product.cpp | 52 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/join/physical_delim_join.cpp | 117 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp | 283 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/join/physical_index_join.cpp | 184 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/join/physical_join.cpp | 14 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/join/physical_nested_loop_join.cpp | 311 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/join/physical_piecewise_merge_join.cpp | 332 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/order/physical_order.cpp | 124 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/order/physical_top_n.cpp | 48 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/persistent/buffered_csv_reader.cpp | 7 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_to_file.cpp | 67 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/persistent/physical_delete.cpp | 41 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/persistent/physical_export.cpp | 38 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/persistent/physical_insert.cpp | 56 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/persistent/physical_update.cpp | 54 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/projection/physical_projection.cpp | 39 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/projection/physical_tableinout_function.cpp | 33 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/projection/physical_unnest.cpp | 125 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/scan/physical_chunk_scan.cpp | 24 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/scan/physical_dummy_scan.cpp | 22 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/scan/physical_empty_result.cpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/scan/physical_expression_scan.cpp | 93 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/scan/physical_table_scan.cpp | 122 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/schema/physical_alter.cpp | 24 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/schema/physical_create_function.cpp | 25 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/schema/physical_create_index.cpp | 25 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/schema/physical_create_schema.cpp | 25 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/schema/physical_create_sequence.cpp | 25 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/schema/physical_create_table.cpp | 25 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/schema/physical_create_table_as.cpp | 36 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/schema/physical_create_type.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/schema/physical_create_view.cpp | 25 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/schema/physical_drop.cpp | 24 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/set/physical_recursive_cte.cpp | 205 duckdb-0.3.1/duckdb/src/duckdb/src/execution/operator/set/physical_union.cpp | 44 duckdb-0.3.1/duckdb/src/duckdb/src/execution/partitionable_hashtable.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/execution/physical_operator.cpp | 83 duckdb-0.3.1/duckdb/src/duckdb/src/execution/physical_plan/plan_aggregate.cpp | 12 duckdb-0.3.1/duckdb/src/duckdb/src/execution/physical_plan/plan_comparison_join.cpp | 14 duckdb-0.3.1/duckdb/src/duckdb/src/execution/physical_plan/plan_create.cpp | 14 duckdb-0.3.1/duckdb/src/duckdb/src/execution/physical_plan/plan_create_table.cpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/execution/physical_plan/plan_expression_get.cpp | 20 duckdb-0.3.1/duckdb/src/duckdb/src/execution/physical_plan_generator.cpp | 1 duckdb-0.3.1/duckdb/src/duckdb/src/execution/radix_partitioned_hashtable.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/execution/window_segment_tree.cpp | 15 duckdb-0.3.1/duckdb/src/duckdb/src/function/aggregate/algebraic/avg.cpp | 67 duckdb-0.3.1/duckdb/src/duckdb/src/function/aggregate/distributive/arg_min_max.cpp | 54 duckdb-0.3.1/duckdb/src/duckdb/src/function/aggregate/distributive/bool.cpp | 8 duckdb-0.3.1/duckdb/src/duckdb/src/function/aggregate/distributive/count.cpp | 10 duckdb-0.3.1/duckdb/src/duckdb/src/function/aggregate/distributive/first.cpp | 12 duckdb-0.3.1/duckdb/src/duckdb/src/function/aggregate/distributive/product.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/function/aggregate/distributive/string_agg.cpp | 18 duckdb-0.3.1/duckdb/src/duckdb/src/function/aggregate/distributive/sum.cpp | 32 duckdb-0.3.1/duckdb/src/duckdb/src/function/aggregate/holistic/quantile.cpp | 859 duckdb-0.3.1/duckdb/src/duckdb/src/function/aggregate/nested/list.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/function/aggregate/sorted_aggregate_function.cpp | 8 duckdb-0.3.1/duckdb/src/duckdb/src/function/compression_config.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/function/function.cpp | 28 duckdb-0.3.1/duckdb/src/duckdb/src/function/pragma/pragma_functions.cpp | 20 duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/list/list_concat.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/list/list_extract.cpp | 16 duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/math/numeric.cpp | 36 duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/math_functions.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/nested_functions.cpp | 1 duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/operators/arithmetic.cpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/string/chr.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/string/concat.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/string/length.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/string/printf.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/string/regexp.cpp | 105 duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/string_functions.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/struct/struct_extract.cpp | 14 duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/system/system_functions.cpp | 21 duckdb-0.3.1/duckdb/src/duckdb/src/function/scalar/uuid |only duckdb-0.3.1/duckdb/src/duckdb/src/function/table/arrow.cpp | 59 duckdb-0.3.1/duckdb/src/duckdb/src/function/table/range.cpp | 20 duckdb-0.3.1/duckdb/src/duckdb/src/function/table/read_csv.cpp | 11 duckdb-0.3.1/duckdb/src/duckdb/src/function/table/table_scan.cpp | 18 duckdb-0.3.1/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/catalog/catalog.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/schema_catalog_entry.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/type_catalog_entry.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_search_path.hpp | 1 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_set.hpp | 9 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/arrow_wrapper.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/enums/catalog_type.hpp | 1 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/enums/compression_type.hpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/enums/expression_type.hpp | 1 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/enums/logical_operator_type.hpp | 1 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/enums/operator_result_type.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/enums/physical_operator_type.hpp | 1 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/enums/wal_type.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/enums/window_aggregation_mode.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/operator/abs.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/serializer.hpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/sort/sort.hpp | 7 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/stack.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/tree_renderer.hpp | 39 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/types.hpp | 40 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/types/data_chunk.hpp | 15 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/types/hugeint.hpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/types/interval.hpp | 12 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/types/selection_vector.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/common/types/vector.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/aggregate_hashtable.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/execution_context.hpp | 6 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/executor.hpp | 80 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor.hpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/join_hashtable.hpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_hash_aggregate.hpp | 65 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_perfecthash_aggregate.hpp | 32 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_simple_aggregate.hpp | 44 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_window.hpp | 49 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/filter/physical_filter.hpp | 15 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_execute.hpp | 10 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_limit.hpp | 21 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_load.hpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_pragma.hpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_prepare.hpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_reservoir_sample.hpp | 27 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_set.hpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_streaming_sample.hpp | 16 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_transaction.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_vacuum.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/perfect_hash_join_executor.hpp | 42 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_blockwise_nl_join.hpp | 48 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_cross_product.hpp | 34 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_delim_join.hpp | 27 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_hash_join.hpp | 85 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_index_join.hpp | 23 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_join.hpp | 6 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_nested_loop_join.hpp | 56 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_piecewise_merge_join.hpp | 56 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_order.hpp | 33 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_top_n.hpp | 36 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_copy_to_file.hpp | 33 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_delete.hpp | 28 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_export.hpp | 17 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_insert.hpp | 38 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_update.hpp | 31 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_projection.hpp | 15 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_tableinout_function.hpp | 10 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_unnest.hpp | 11 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_chunk_scan.hpp | 9 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_dummy_scan.hpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_empty_result.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_expression_scan.hpp | 22 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_table_scan.hpp | 14 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_alter.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_function.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_index.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_schema.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_sequence.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_table.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_table_as.hpp | 23 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_type.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_view.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_drop.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_recursive_cte.hpp | 20 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_union.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/physical_operator.hpp | 161 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/radix_partitioned_hashtable.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/execution/window_segment_tree.hpp | 15 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/function/aggregate/sum_helpers.hpp | 51 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/function/aggregate_function.hpp | 11 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/function/scalar/math_functions.hpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/function/scalar/nested_functions.hpp | 9 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/function/scalar/regexp.hpp | 12 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/function/scalar/uuid_functions.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/function/table/arrow.hpp | 7 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/function/table_function.hpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/main/config.hpp | 7 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/main/connection.hpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/main/extension_helper.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/main/query_profiler.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/main/query_result.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/main/relation.hpp | 6 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/main/relation/table_function_relation.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/expression_rewriter.hpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/matcher/expression_matcher.hpp | 16 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/matcher/type_matcher.hpp | 18 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/matcher/type_matcher_id.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/arithmetic_simplification.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/case_simplification.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/comparison_simplification.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/conjunction_simplification.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/constant_folding.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/date_part_simplification.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/distributivity.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/empty_needle_removal.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/enum_comparison.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/in_clause_simplification.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/like_optimizations.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/list.hpp | 1 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/optimizer/rule/move_constants.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/parallel/event.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline.hpp | 97 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline_complete_event.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline_event.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline_executor.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline_finish_event.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/parallel/task.hpp | 18 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/parser/column_definition.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/parser/group_by_node.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_type_info.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/parser/query_node/select_node.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp | 78 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/planner/binder.hpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_case_expression.hpp | 14 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder.hpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/column_alias_binder.hpp |only duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/having_binder.hpp | 9 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/select_binder.hpp | 1 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/where_binder.hpp | 9 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/planner/filter/conjunction_filter.hpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/planner/filter/constant_filter.hpp | 1 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_aggregate.hpp | 8 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/planner/query_node/bound_select_node.hpp | 16 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/planner/table_filter.hpp | 28 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp | 10 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/table_data_writer.hpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint_manager.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/storage/data_table.hpp | 16 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/storage/storage_info.hpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data.hpp | 8 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data_checkpointer.hpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/storage/table/list_column_data.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/storage/table/standard_column_data.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/storage/table/struct_column_data.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/storage/write_ahead_log.hpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/include/duckdb/transaction/local_storage.hpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/main/connection.cpp | 12 duckdb-0.3.1/duckdb/src/duckdb/src/main/database.cpp | 9 duckdb-0.3.1/duckdb/src/duckdb/src/main/extension_helper.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/main/query_profiler.cpp | 41 duckdb-0.3.1/duckdb/src/duckdb/src/main/relation.cpp | 9 duckdb-0.3.1/duckdb/src/duckdb/src/main/relation/aggregate_relation.cpp | 9 duckdb-0.3.1/duckdb/src/duckdb/src/main/relation/table_function_relation.cpp | 21 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/expression_heuristics.cpp | 8 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/expression_rewriter.cpp | 6 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/filter_combiner.cpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/in_clause_rewriter.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/matcher/expression_matcher.cpp | 23 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/optimizer.cpp | 1 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_aggregate.cpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/rule/arithmetic_simplification.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/rule/case_simplification.cpp | 41 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/rule/comparison_simplification.cpp | 7 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/rule/conjunction_simplification.cpp | 8 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/rule/constant_folding.cpp | 10 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/rule/date_part_simplification.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/rule/distributivity.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/rule/empty_needle_removal.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/rule/enum_comparison.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/rule/in_clause_simplification_rule.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/rule/like_optimizations.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/rule/move_constants.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_case.cpp | 18 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/statistics/expression/propagate_operator.cpp | 36 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_aggregate.cpp | 7 duckdb-0.3.1/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_filter.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/parallel/event.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/parallel/executor.cpp | 591 duckdb-0.3.1/duckdb/src/duckdb/src/parallel/executor_task.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/parallel/pipeline.cpp | 359 duckdb-0.3.1/duckdb/src/duckdb/src/parallel/pipeline_complete_event.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/parallel/pipeline_event.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/parallel/pipeline_executor.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/parallel/pipeline_finish_event.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/parser/column_definition.cpp | 1 duckdb-0.3.1/duckdb/src/duckdb/src/parser/expression/subquery_expression.cpp | 6 duckdb-0.3.1/duckdb/src/duckdb/src/parser/query_node/select_node.cpp | 36 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/constraint/transform_constraint.cpp | 13 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_array_access.cpp | 16 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_bool_expr.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_case.cpp | 11 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_cast.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_coalesce.cpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_columnref.cpp | 9 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_constant.cpp | 6 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_expression.cpp | 60 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_function.cpp | 37 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_grouping_function.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_interval.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_is_null.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_lambda.cpp | 9 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_operator.cpp | 40 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_param_ref.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_positional_reference.cpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/expression/transform_subquery.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/helpers/transform_groupby.cpp | 155 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/helpers/transform_orderby.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/helpers/transform_sample.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/helpers/transform_typename.cpp | 12 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_alter_table.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_call.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_copy.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_create_enum.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_create_function.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_create_index.cpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_create_schema.cpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_create_sequence.cpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_create_table.cpp | 21 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_create_table_as.cpp | 6 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_create_view.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_delete.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_drop.cpp | 10 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_insert.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_pragma.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_prepare.cpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_select_node.cpp | 15 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_set.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/statement/transform_update.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/tableref/transform_from.cpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/tableref/transform_join.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/tableref/transform_table_function.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transform/tableref/transform_tableref.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/parser/transformer.cpp | 24 duckdb-0.3.1/duckdb/src/duckdb/src/planner/binder.cpp | 12 duckdb-0.3.1/duckdb/src/duckdb/src/planner/binder/expression/bind_aggregate_expression.cpp | 56 duckdb-0.3.1/duckdb/src/duckdb/src/planner/binder/expression/bind_case_expression.cpp | 31 duckdb-0.3.1/duckdb/src/duckdb/src/planner/binder/expression/bind_cast_expression.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/planner/binder/expression/bind_macro_expression.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/planner/binder/expression/bind_operator_expression.cpp | 37 duckdb-0.3.1/duckdb/src/duckdb/src/planner/binder/expression/bind_window_expression.cpp | 41 duckdb-0.3.1/duckdb/src/duckdb/src/planner/binder/query_node/bind_select_node.cpp | 32 duckdb-0.3.1/duckdb/src/duckdb/src/planner/binder/query_node/plan_select_node.cpp | 17 duckdb-0.3.1/duckdb/src/duckdb/src/planner/binder/statement/bind_create.cpp | 45 duckdb-0.3.1/duckdb/src/duckdb/src/planner/binder/statement/bind_create_table.cpp | 13 duckdb-0.3.1/duckdb/src/duckdb/src/planner/binder/statement/bind_drop.cpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/planner/binder/statement/bind_update.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/planner/expression/bound_case_expression.cpp | 46 duckdb-0.3.1/duckdb/src/duckdb/src/planner/expression/bound_cast_expression.cpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/planner/expression_binder.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/planner/expression_binder/column_alias_binder.cpp |only duckdb-0.3.1/duckdb/src/duckdb/src/planner/expression_binder/having_binder.cpp | 30 duckdb-0.3.1/duckdb/src/duckdb/src/planner/expression_binder/order_binder.cpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/planner/expression_binder/select_binder.cpp | 32 duckdb-0.3.1/duckdb/src/duckdb/src/planner/expression_binder/where_binder.cpp | 22 duckdb-0.3.1/duckdb/src/duckdb/src/planner/expression_iterator.cpp | 12 duckdb-0.3.1/duckdb/src/duckdb/src/planner/filter/conjunction_filter.cpp | 32 duckdb-0.3.1/duckdb/src/duckdb/src/planner/filter/constant_filter.cpp | 8 duckdb-0.3.1/duckdb/src/duckdb/src/planner/operator/logical_aggregate.cpp | 10 duckdb-0.3.1/duckdb/src/duckdb/src/planner/planner.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/planner/subquery/flatten_dependent_join.cpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/storage/buffer_manager.cpp | 62 duckdb-0.3.1/duckdb/src/duckdb/src/storage/checkpoint/table_data_writer.cpp | 4 duckdb-0.3.1/duckdb/src/duckdb/src/storage/checkpoint_manager.cpp | 63 duckdb-0.3.1/duckdb/src/duckdb/src/storage/data_table.cpp | 86 duckdb-0.3.1/duckdb/src/duckdb/src/storage/local_storage.cpp | 6 duckdb-0.3.1/duckdb/src/duckdb/src/storage/single_file_block_manager.cpp | 17 duckdb-0.3.1/duckdb/src/duckdb/src/storage/statistics/numeric_statistics.cpp | 15 duckdb-0.3.1/duckdb/src/duckdb/src/storage/storage_info.cpp | 2 duckdb-0.3.1/duckdb/src/duckdb/src/storage/table/chunk_info.cpp | 8 duckdb-0.3.1/duckdb/src/duckdb/src/storage/table/column_data.cpp | 5 duckdb-0.3.1/duckdb/src/duckdb/src/storage/table/column_data_checkpointer.cpp | 55 duckdb-0.3.1/duckdb/src/duckdb/src/storage/table/list_column_data.cpp | 9 duckdb-0.3.1/duckdb/src/duckdb/src/storage/table/row_group.cpp | 3 duckdb-0.3.1/duckdb/src/duckdb/src/storage/table/standard_column_data.cpp | 7 duckdb-0.3.1/duckdb/src/duckdb/src/storage/table/struct_column_data.cpp | 7 duckdb-0.3.1/duckdb/src/duckdb/src/storage/wal_replay.cpp | 56 duckdb-0.3.1/duckdb/src/duckdb/src/storage/write_ahead_log.cpp | 21 duckdb-0.3.1/duckdb/src/duckdb/src/transaction/commit_state.cpp | 22 duckdb-0.3.1/duckdb/src/duckdb/third_party/libpg_query/include/nodes/parsenodes.hpp | 58 duckdb-0.3.1/duckdb/src/duckdb/third_party/libpg_query/include/nodes/primnodes.hpp | 10 duckdb-0.3.1/duckdb/src/duckdb/third_party/libpg_query/include/parser/gram.hpp | 1587 duckdb-0.3.1/duckdb/src/duckdb/third_party/libpg_query/include/parser/kwlist.hpp | 2 duckdb-0.3.1/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp |29294 +++++----- duckdb-0.3.1/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TCompactProtocol.tcc | 2 duckdb-0.3.1/duckdb/src/include/rapi.hpp | 26 duckdb-0.3.1/duckdb/src/rapi.cpp | 4 duckdb-0.3.1/duckdb/src/register.cpp | 69 duckdb-0.3.1/duckdb/src/scan.cpp | 55 duckdb-0.3.1/duckdb/src/statement.cpp | 46 duckdb-0.3.1/duckdb/src/utils.cpp | 12 duckdb-0.3.1/duckdb/tests/testthat/data |only duckdb-0.3.1/duckdb/tests/testthat/test-DBItest.R | 19 duckdb-0.3.1/duckdb/tests/testthat/test_bind.R | 19 duckdb-0.3.1/duckdb/tests/testthat/test_dbinfo.R | 2 duckdb-0.3.1/duckdb/tests/testthat/test_factor.R |only duckdb-0.3.1/duckdb/tests/testthat/test_fetch_arrow.R | 51 duckdb-0.3.1/duckdb/tests/testthat/test_list.R | 6 duckdb-0.3.1/duckdb/tests/testthat/test_parquet.R | 12 duckdb-0.3.1/duckdb/tests/testthat/test_read.R | 2 duckdb-0.3.1/duckdb/tests/testthat/test_readonly.R | 3 duckdb-0.3.1/duckdb/tests/testthat/test_register.R | 8 duckdb-0.3.1/duckdb/tests/testthat/test_register_arrow.R | 123 duckdb-0.3.1/duckdb/tests/testthat/test_register_readonly.R | 7 duckdb-0.3.1/duckdb/tests/testthat/test_timezone.R | 31 duckdb-0.3.1/duckdb/tests/testthat/test_viewer.R | 7 472 files changed, 24552 insertions(+), 20348 deletions(-)
Title: Creates Log Files
Description: Contains functions to help create log files. The
package aims to overcome the difficulty of the base R sink() command. The
log_print() function will print to both the console and the file log,
without interfering in other write operations.
Author: David Bosak [aut, cre]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between logr versions 1.2.6 dated 2021-10-04 and 1.2.7 dated 2021-11-16
logr-1.2.6/logr/tests/testthat/log/test1.log |only logr-1.2.6/logr/tests/testthat/log/test2.log |only logr-1.2.6/logr/tests/testthat/log/test3.log |only logr-1.2.6/logr/tests/testthat/log/test4.log |only logr-1.2.6/logr/tests/testthat/log/test5.log |only logr-1.2.6/logr/tests/testthat/log/test9.log |only logr-1.2.7/logr/DESCRIPTION | 8 logr-1.2.7/logr/MD5 | 67 +++-- logr-1.2.7/logr/NAMESPACE | 1 logr-1.2.7/logr/NEWS.md | 8 logr-1.2.7/logr/R/logr.R | 277 +---------------------- logr-1.2.7/logr/R/supplements.R | 3 logr-1.2.7/logr/R/utilities.R |only logr-1.2.7/logr/README.md | 6 logr-1.2.7/logr/build/vignette.rds |binary logr-1.2.7/logr/inst/doc/logr-example1.R |only logr-1.2.7/logr/inst/doc/logr-example1.Rmd |only logr-1.2.7/logr/inst/doc/logr-example1.html |only logr-1.2.7/logr/inst/doc/logr-faq.R |only logr-1.2.7/logr/inst/doc/logr-faq.Rmd |only logr-1.2.7/logr/inst/doc/logr-faq.html |only logr-1.2.7/logr/inst/doc/logr-parts.Rmd | 2 logr-1.2.7/logr/inst/doc/logr-parts.html | 2 logr-1.2.7/logr/inst/doc/logr-put.Rmd | 2 logr-1.2.7/logr/inst/doc/logr-put.html | 2 logr-1.2.7/logr/inst/doc/logr-tidylog.Rmd | 2 logr-1.2.7/logr/inst/doc/logr-tidylog.html | 2 logr-1.2.7/logr/inst/doc/logr.Rmd | 2 logr-1.2.7/logr/inst/doc/logr.html | 2 logr-1.2.7/logr/inst/extdata |only logr-1.2.7/logr/man/images/example1a.png |only logr-1.2.7/logr/man/images/example1b.png |only logr-1.2.7/logr/man/images/example1c.png |only logr-1.2.7/logr/man/log_open.Rd | 8 logr-1.2.7/logr/tests/testthat/log/test-logr.log |only logr-1.2.7/logr/tests/testthat/log/test.log | 156 ++++++------ logr-1.2.7/logr/tests/testthat/log/test8.log | 16 - logr-1.2.7/logr/tests/testthat/test-logr.R | 98 ++++++-- logr-1.2.7/logr/tests/testthat/test-utilities.R |only logr-1.2.7/logr/vignettes/logr-example1.Rmd |only logr-1.2.7/logr/vignettes/logr-faq.Rmd |only logr-1.2.7/logr/vignettes/logr-parts.Rmd | 2 logr-1.2.7/logr/vignettes/logr-put.Rmd | 2 logr-1.2.7/logr/vignettes/logr-tidylog.Rmd | 2 logr-1.2.7/logr/vignettes/logr.Rmd | 2 45 files changed, 274 insertions(+), 398 deletions(-)
Title: Sensitivities of Prices of Financial Options
Description: Methods to calculate sensitivities of financial option prices for
European, Asian, American and Digital Options options in the Black Scholes
model. Classical formulas are implemented for European options in the Black
Scholes Model, as is presented in Hull, J. C. (2017). Options, Futures, and
Other Derivatives, Global Edition (9th Edition). Pearson. In the case of Asian
options, Malliavin Monte Carlo Greeks are implemented, see Hudde, A. &
Rüschendorf, L. (2016). European and Asian Greeks for exponential Lévy
processes. <arXiv:1603.00920>.
For American options, the Binomial Tree Method is implemented, as is presented
in Hull, J. C. (2017).
Author: Anselm Hudde [aut, cre] (<https://orcid.org/0000-0002-5652-2815>)
Maintainer: Anselm Hudde <anselmhudde@gmx.de>
Diff between greeks versions 0.3.1 dated 2021-08-06 and 0.4.0 dated 2021-11-16
DESCRIPTION | 27 ++++++------- MD5 | 18 ++++---- NAMESPACE | 1 R/BS_European_Greeks.R | 81 ++++++++++++++++++++++++++++++++------- R/Greeks.R |only R/Malliavin_Asian_Greeks.R | 20 ++++----- R/Malliavin_European_Greeks.R | 57 +++++++++++++-------------- man/BS_European_Greeks.Rd | 7 +-- man/Greeks.Rd |only man/Malliavin_Asian_Greeks.Rd | 20 ++++----- man/Malliavin_European_Greeks.Rd | 22 +++++----- 11 files changed, 157 insertions(+), 96 deletions(-)
Title: Demographic Modelling Using Projection Matrices
Description: Tools for modelling populations and demography using matrix projection models,
with deterministic and stochastic model implementations. Includes population projection,
indices of short- and long-term population size and growth, perturbation analysis,
convergence to stability or stationarity, and diagnostic and manipulation tools.
Author: Iain Stott [aut, cre],
Dave Hodgson [aut],
Stuart Townley [aut],
Stephen Ellner [ctb]
Maintainer: Iain Stott <iainmstott@gmail.com>
Diff between popdemo versions 1.3-0 dated 2018-03-17 and 1.3-1 dated 2021-11-16
ChangeLog | 2 DESCRIPTION | 12 MD5 | 151 ++-- NAMESPACE | 2 R/CohenD.R | 5 R/KeyfitzD.R | 3 R/Kreiss.R | 8 R/Matlab2R.R | 3 R/R2Matlab.R | 3 R/S3-plot.tfa.R | 11 R/S3-plot.tfam.R | 11 R/S4-ProjectionClass.R | 287 -------- R/S4-ProjectionPlots.R |only R/blockmatrix.R | 10 R/convt.R | 6 R/data.R | 11 R/dr.R | 7 R/eig.R | 8 R/elas.R | 5 R/inertia.R | 13 R/isErgodic.R | 6 R/isIrreducible.R | 6 R/isPrimitive.R | 6 R/maxamp.R | 8 R/maxatt.R | 8 R/project.R | 6 R/projectionD.R | 5 R/reac.R | 9 R/sens.R | 5 R/stoch.R | 7 R/tfa_inertia.R | 13 R/tfa_lambda.R | 14 R/tfam_inertia.R | 15 R/tfam_lambda.R | 14 R/tfs_inertia&tfsm_inertia.R | 12 R/tfs_lambda&tfsm_lambda.R | 10 R/truelambda.R | 8 build/vignette.rds |binary inst/doc/popdemo.R | 96 +- inst/doc/popdemo.Rmd | 8 inst/doc/popdemo.html | 1499 +++++++++++++++++++++++-------------------- man/CohenD.Rd | 12 man/KeyfitzD.Rd | 10 man/Kreiss.Rd | 31 man/Matlab2R.Rd | 4 man/Pbear.Rd | 10 man/Projection-class.Rd | 57 - man/Projection-plots.Rd | 388 ++++++----- man/R2Matlab.Rd | 4 man/Tort.Rd | 11 man/blockmatrix.Rd | 11 man/convt.Rd | 13 man/dr.Rd | 14 man/eigs.Rd | 11 man/elas.Rd | 19 man/inertia.Rd | 22 man/isErgodic.Rd | 13 man/isIrreducible.Rd | 13 man/isPrimitive.Rd | 13 man/maxamp.Rd | 31 man/maxatt.Rd | 31 man/plot.tfa.Rd | 12 man/plot.tfam.Rd | 15 man/popdemo-deprecated.Rd | 1 man/project.Rd | 26 man/projectionD.Rd | 10 man/reac.Rd | 19 man/sens.Rd | 19 man/stoch.Rd | 20 man/tfa_inertia.Rd | 37 - man/tfa_lambda.Rd | 36 - man/tfam_inertia.Rd | 53 + man/tfam_lambda.Rd | 50 + man/tfs_inertia.Rd | 36 - man/tfs_lambda.Rd | 34 man/truelambda.Rd | 15 vignettes/popdemo.Rmd | 8 77 files changed, 1808 insertions(+), 1614 deletions(-)
Title: Spherical k-Means Clustering
Description: Algorithms to compute spherical k-means partitions.
Features several methods, including a genetic and a fixed-point
algorithm and an interface to the CLUTO vcluster program.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Ingo Feinerer [aut],
Martin Kober [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between skmeans versions 0.2-13 dated 2020-12-03 and 0.2-14 dated 2021-11-16
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/skmeans.R | 18 +++++++++--------- build/partial.rdb |binary man/skmeans.Rd | 2 +- 5 files changed, 18 insertions(+), 18 deletions(-)
Title: Machine Learning in R - Next Generation
Description: Efficient, object-oriented programming on the
building blocks of machine learning. Provides 'R6' objects for tasks,
learners, resamplings, and measures. The package is geared towards
scalability and larger datasets by supporting parallelization and
out-of-memory data-backends like databases. While 'mlr3' focuses on
the core computational operations, add-on packages provide additional
functionality.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Jakob Richter [aut] (<https://orcid.org/0000-0003-4481-5554>),
Patrick Schratz [aut] (<https://orcid.org/0000-0003-0748-6624>),
Giuseppe Casalicchio [ctb] (<https://orcid.org/0000-0001-5324-5966>),
Stefan Coors [ctb] (<https://orcid.org/0000-0002-7465-2146>),
Quay Au [ctb] (<https://orcid.org/0000-0002-5252-8902>),
Martin Binder [aut],
Marc Becker [ctb] (<https://orcid.org/0000-0002-8115-0400>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3 versions 0.12.0 dated 2021-08-05 and 0.13.0 dated 2021-11-16
DESCRIPTION | 36 - MD5 | 490 ++++++++-------- NAMESPACE | 21 NEWS.md | 24 R/BenchmarkResult.R | 24 R/DataBackend.R | 7 R/DataBackendCbind.R | 14 R/DataBackendDataTable.R | 7 R/DataBackendRbind.R | 8 R/DataBackendRename.R | 24 R/HotstartStack.R |only R/Learner.R | 112 ++- R/LearnerClassifDebug.R | 73 +- R/LearnerClassifFeatureless.R | 8 R/LearnerClassifRpart.R | 8 R/LearnerRegrDebug.R |only R/LearnerRegrFeatureless.R | 8 R/LearnerRegrRpart.R | 8 R/Measure.R | 171 +++-- R/MeasureAIC.R | 16 R/MeasureBIC.R | 8 R/MeasureClassifCosts.R | 11 R/MeasureDebug.R | 11 R/MeasureElapsedTime.R | 9 R/MeasureOOBError.R | 8 R/MeasureSelectedFeatures.R | 12 R/MeasureSimilarity.R |only R/MeasureSimple.R | 45 + R/Prediction.R | 23 R/PredictionData.R | 12 R/PredictionDataClassif.R | 19 R/PredictionDataRegr.R | 21 R/ResampleResult.R | 50 + R/Resampling.R | 14 R/ResamplingBootstrap.R | 2 R/ResamplingCV.R | 2 R/ResamplingCustom.R | 2 R/ResamplingCustomCV.R | 2 R/ResamplingHoldout.R | 2 R/ResamplingInsample.R | 2 R/ResamplingLOO.R | 2 R/ResamplingRepeatedCV.R | 2 R/ResamplingSubsampling.R | 2 R/ResultData.R | 53 + R/Task.R | 142 +++- R/TaskClassif.R | 23 R/TaskClassif_breast_cancer.R | 11 R/TaskClassif_german_credit.R | 10 R/TaskClassif_iris.R | 10 R/TaskClassif_penguins.R | 10 R/TaskClassif_pima.R | 10 R/TaskClassif_sonar.R | 10 R/TaskClassif_spam.R | 10 R/TaskClassif_wine.R | 10 R/TaskClassif_zoo.R | 10 R/TaskGenerator.R | 17 R/TaskGenerator2DNormals.R | 2 R/TaskGeneratorCassini.R | 2 R/TaskGeneratorCircle.R | 2 R/TaskGeneratorFriedman1.R | 2 R/TaskGeneratorMoons.R | 2 R/TaskGeneratorSimplex.R | 2 R/TaskGeneratorSmiley.R | 2 R/TaskGeneratorSpirals.R | 2 R/TaskGeneratorXor.R | 2 R/as_data_backend.R | 4 R/as_prediction.R | 7 R/as_prediction_data.R | 2 R/as_resample_result.R | 4 R/as_task.R | 16 R/assertions.R | 40 - R/auto_convert.R | 2 R/benchmark.R | 49 + R/helper.R | 44 + R/install_pkgs.R |only R/mlr_reflections.R | 14 R/partition.R | 13 R/predict.R | 2 R/resample.R | 52 + R/set_threads.R | 2 R/worker.R | 70 +- R/zzz.R | 7 README.md | 41 - build/partial.rdb |binary inst/testthat/helper_autotest.R | 42 + inst/testthat/helper_expectations.R | 27 man/BenchmarkResult.Rd | 39 + man/DataBackend.Rd | 12 man/DataBackendDataTable.Rd | 5 man/DataBackendMatrix.Rd | 5 man/HotstartStack.Rd |only man/Learner.Rd | 35 - man/LearnerClassif.Rd | 7 man/LearnerRegr.Rd | 7 man/Measure.Rd | 69 +- man/MeasureClassif.Rd | 19 man/MeasureRegr.Rd | 19 man/MeasureSimilarity.Rd |only man/Prediction.Rd | 28 man/PredictionClassif.Rd | 3 man/PredictionData.Rd | 6 man/PredictionRegr.Rd | 3 man/ResampleResult.Rd | 42 + man/Resampling.Rd | 8 man/ResultData.Rd | 30 man/Task.Rd | 59 + man/TaskClassif.Rd | 42 - man/TaskRegr.Rd | 4 man/TaskSupervised.Rd | 4 man/TaskUnsupervised.Rd | 4 man/as_benchmark_result.Rd | 4 man/as_data_backend.Rd | 7 man/as_learner.Rd | 4 man/as_measure.Rd | 4 man/as_prediction.Rd | 4 man/as_prediction_classif.Rd | 4 man/as_prediction_data.Rd | 7 man/as_prediction_regr.Rd | 4 man/as_resample_result.Rd | 4 man/as_resampling.Rd | 4 man/as_task.Rd | 4 man/as_task_classif.Rd | 4 man/as_task_regr.Rd | 4 man/auto_convert.Rd | 2 man/benchmark.Rd | 15 man/benchmark_grid.Rd | 8 man/figures/mlr3verse.svg | 699 +++++++++++++---------- man/install_pkgs.Rd |only man/mlr3-package.Rd | 8 man/mlr_assertions.Rd | 5 man/mlr_learners.Rd | 1 man/mlr_learners_classif.debug.Rd | 42 - man/mlr_learners_classif.featureless.Rd | 11 man/mlr_learners_classif.rpart.Rd | 11 man/mlr_learners_regr.debug.Rd |only man/mlr_learners_regr.featureless.Rd | 11 man/mlr_learners_regr.rpart.Rd | 11 man/mlr_measures.Rd | 1 man/mlr_measures_aic.Rd | 31 - man/mlr_measures_bic.Rd | 17 man/mlr_measures_classif.acc.Rd | 13 man/mlr_measures_classif.auc.Rd | 13 man/mlr_measures_classif.bacc.Rd | 9 man/mlr_measures_classif.bbrier.Rd | 16 man/mlr_measures_classif.ce.Rd | 13 man/mlr_measures_classif.costs.Rd | 27 man/mlr_measures_classif.dor.Rd | 12 man/mlr_measures_classif.fbeta.Rd | 18 man/mlr_measures_classif.fdr.Rd | 12 man/mlr_measures_classif.fn.Rd | 9 man/mlr_measures_classif.fnr.Rd | 12 man/mlr_measures_classif.fomr.Rd | 12 man/mlr_measures_classif.fp.Rd | 9 man/mlr_measures_classif.fpr.Rd | 12 man/mlr_measures_classif.logloss.Rd | 13 man/mlr_measures_classif.mbrier.Rd | 9 man/mlr_measures_classif.mcc.Rd | 13 man/mlr_measures_classif.npv.Rd | 12 man/mlr_measures_classif.ppv.Rd | 12 man/mlr_measures_classif.prauc.Rd | 13 man/mlr_measures_classif.precision.Rd | 12 man/mlr_measures_classif.recall.Rd | 12 man/mlr_measures_classif.sensitivity.Rd | 12 man/mlr_measures_classif.specificity.Rd | 12 man/mlr_measures_classif.tn.Rd | 9 man/mlr_measures_classif.tnr.Rd | 12 man/mlr_measures_classif.tp.Rd | 9 man/mlr_measures_classif.tpr.Rd | 12 man/mlr_measures_debug.Rd | 25 man/mlr_measures_elapsed_time.Rd | 16 man/mlr_measures_oob_error.Rd | 16 man/mlr_measures_regr.bias.Rd | 13 man/mlr_measures_regr.ktau.Rd | 9 man/mlr_measures_regr.mae.Rd | 15 man/mlr_measures_regr.mape.Rd | 16 man/mlr_measures_regr.maxae.Rd | 9 man/mlr_measures_regr.medae.Rd | 11 man/mlr_measures_regr.medse.Rd | 9 man/mlr_measures_regr.mse.Rd | 13 man/mlr_measures_regr.msle.Rd | 16 man/mlr_measures_regr.pbias.Rd | 13 man/mlr_measures_regr.rae.Rd | 12 man/mlr_measures_regr.rmse.Rd | 13 man/mlr_measures_regr.rmsle.Rd | 16 man/mlr_measures_regr.rrse.Rd | 12 man/mlr_measures_regr.rse.Rd | 12 man/mlr_measures_regr.rsq.Rd | 12 man/mlr_measures_regr.sae.Rd | 9 man/mlr_measures_regr.smape.Rd | 12 man/mlr_measures_regr.srho.Rd | 9 man/mlr_measures_regr.sse.Rd | 9 man/mlr_measures_selected_features.Rd | 25 man/mlr_measures_sim.jaccard.Rd |only man/mlr_measures_sim.phi.Rd |only man/mlr_reflections.Rd | 4 man/mlr_resamplings_bootstrap.Rd | 4 man/mlr_resamplings_custom.Rd | 4 man/mlr_resamplings_custom_cv.Rd | 4 man/mlr_resamplings_cv.Rd | 4 man/mlr_resamplings_holdout.Rd | 4 man/mlr_resamplings_insample.Rd | 4 man/mlr_resamplings_loo.Rd | 4 man/mlr_resamplings_repeated_cv.Rd | 4 man/mlr_resamplings_subsampling.Rd | 4 man/mlr_task_generators_2dnormals.Rd | 9 man/mlr_task_generators_cassini.Rd | 9 man/mlr_task_generators_circle.Rd | 7 man/mlr_task_generators_friedman1.Rd | 7 man/mlr_task_generators_moons.Rd | 7 man/mlr_task_generators_simplex.Rd | 10 man/mlr_task_generators_smiley.Rd | 8 man/mlr_task_generators_spirals.Rd | 8 man/mlr_task_generators_xor.Rd | 7 man/mlr_tasks_boston_housing.Rd | 3 man/mlr_tasks_breast_cancer.Rd | 8 man/mlr_tasks_german_credit.Rd | 8 man/mlr_tasks_iris.Rd | 8 man/mlr_tasks_mtcars.Rd | 3 man/mlr_tasks_penguins.Rd | 8 man/mlr_tasks_pima.Rd | 8 man/mlr_tasks_sonar.Rd | 8 man/mlr_tasks_spam.Rd | 8 man/mlr_tasks_wine.Rd | 8 man/mlr_tasks_zoo.Rd | 8 man/partition.Rd | 13 man/predict.Learner.Rd | 2 man/resample.Rd | 15 man/set_threads.Rd | 2 tests/testthat/test_DataBackendCbind.R | 11 tests/testthat/test_DataBackendRbind.R | 7 tests/testthat/test_DataBackendRename.R | 23 tests/testthat/test_HotstartStack.R |only tests/testthat/test_Learner.R | 69 ++ tests/testthat/test_Measure.R | 66 ++ tests/testthat/test_MeasureClassif.R | 2 tests/testthat/test_MeasureRegr.R | 2 tests/testthat/test_PredictionClassif.R | 20 tests/testthat/test_PredictionDataClassif.R | 6 tests/testthat/test_PredictionDataRegr.R | 5 tests/testthat/test_PredictionRegr.R | 10 tests/testthat/test_Task.R | 59 + tests/testthat/test_benchmark.R | 1 tests/testthat/test_encapsulate.R | 6 tests/testthat/test_hotstart.R |only tests/testthat/test_install_pkgs.R |only tests/testthat/test_mlr_learners_classif_debug.R | 2 tests/testthat/test_mlr_learners_classif_rpart.R | 30 tests/testthat/test_mlr_learners_regr_rpart.R | 28 tests/testthat/test_mlr_measures_similarity.R |only tests/testthat/test_mlr_resampling_cv.R | 7 tests/testthat/test_predict.R | 24 tests/testthat/test_resample.R | 4 tests/testthat/test_resultdata.R | 12 253 files changed, 3276 insertions(+), 1494 deletions(-)
Title: Read-Write API Client Library for Wikidata
Description: Read from, interogate, and write to Wikidata <https://www.wikidata.org> -
the multilingual, interdisciplinary, semantic knowledgebase. Includes functions to:
read from wikidata (single items, properties, or properties); query wikidata (retrieving
all items that match a set of criterial via Wikidata SPARQL query service); write to
Wikidata (adding new items or statements via QuickStatements); and handle and manipulate
Wikidata objects (as lists and tibbles). Uses the Wikidata and Quickstatements APIs.
Author: Thomas Shafee [aut, cre] (<https://orcid.org/0000-0002-2298-7593>),
Os Keyes [aut] (<https://orcid.org/0000-0001-5196-609X>),
Serena Signorelli [aut],
Alex Lum [ctb] (<https://orcid.org/0000-0002-9295-9053>),
Christian Graul [ctb],
Mikhail Popov [ctb] (<https://orcid.org/0000-0003-0145-8948>)
Maintainer: Thomas Shafee <T.Shafee@latrobe.edu.au>
Diff between WikidataR versions 2.3.1 dated 2021-07-12 and 2.3.3 dated 2021-11-16
DESCRIPTION | 38 +++++++++++++++++++++++++++----------- MD5 | 10 +++++----- R/queries.R | 20 ++++++++++++++------ R/utils.R | 6 +++--- R/writes.R | 2 +- README.md | 12 ++++++------ 6 files changed, 56 insertions(+), 32 deletions(-)
Title: Loading Data from 'Google Ads API'
Description: Interface for loading data from 'Google Ads API',
see <https://developers.google.com/google-ads/api/docs/start>.
Package provide function for authorization and loading reports.
Author: Alexey Seleznev [aut, cre] (<https://orcid.org/0000-0003-0410-7385>),
Netpeak [cph]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rgoogleads versions 0.3.0 dated 2021-09-03 and 0.4.0 dated 2021-11-16
DESCRIPTION | 11 LICENSE | 2 MD5 | 27 +- NAMESPACE | 1 NEWS.md | 10 R/gads_get_fields.R | 110 ++++----- R/gads_get_report_helper.R | 6 R/gads_utils.R |only R/zzz.R | 16 + README.md | 372 ++++++++++++++++----------------- build/vignette.rds |binary inst/doc/migrate_from_radrowds_us.Rmd | 2 inst/doc/migrate_from_radrowds_us.html | 24 +- inst/doc/migrate_from_radwords_ru.html | 24 +- vignettes/migrate_from_radrowds_us.Rmd | 2 15 files changed, 318 insertions(+), 289 deletions(-)
Title: Helper Functions for 'mlr3'
Description: Frequently used helper functions and assertions
used in 'mlr3' and its companion packages. Comes with helper functions
for functional programming, for printing, to work with 'data.table',
as well as some generally useful 'R6' classes. This package also
supersedes the package 'BBmisc'.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Patrick Schratz [aut] (<https://orcid.org/0000-0003-0748-6624>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3misc versions 0.9.4 dated 2021-09-08 and 0.9.5 dated 2021-11-16
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/enframe.R | 27 +++++++++++++++++++++++---- R/invoke.R | 2 +- R/rd_info.R | 2 ++ man/enframe.Rd | 14 ++++++++++---- man/invoke.Rd | 2 +- man/mlr3misc-package.Rd | 6 +----- 10 files changed, 55 insertions(+), 27 deletions(-)
Title: Fixed Rank Kriging
Description: Fixed Rank Kriging is a tool for spatial/spatio-temporal modelling and prediction with large datasets. The approach models the field, and hence the covariance function, using a set of r basis functions, where r is typically much smaller than the number of data points (or polygons) m. This low-rank basis-function representation facilitates the modelling of 'big' spatial/spatio-temporal data. The method naturally allows for non-stationary, anisotropic covariance functions. Discretisation of the spatial domain into so-called basic areal units (BAUs) facilitates the use of observations with varying support (i.e., both point-referenced and areal supports, potentially simultaneously), and prediction over arbitrary user-specified regions. `FRK` also supports inference over various manifolds, including the 2D plane and 3D sphere, and it provides helper functions to model, fit, predict, and plot with relative ease. Version 2.0.0 and above of the package `FRK` also supports modelling of non-Gaussian data, by employing a spatial generalised linear mixed model (GLMM) framework to cater for Poisson, binomial, negative-binomial, gamma, and inverse-Gaussian distributions. Zammit-Mangion and Cressie <doi:10.18637/jss.v098.i04> describe `FRK` in a Gaussian setting, and detail its use of basis functions and BAUs.
Author: Andrew Zammit-Mangion [aut, cre],
Matthew Sainsbury-Dale [aut]
Maintainer: Andrew Zammit-Mangion <andrewzm@gmail.com>
Diff between FRK versions 2.0.1 dated 2021-10-11 and 2.0.2 dated 2021-11-16
FRK-2.0.1/FRK/vignettes/FRK_intro.fdb_latexmk |only FRK-2.0.1/FRK/vignettes/FRK_intro.fls |only FRK-2.0.2/FRK/DESCRIPTION | 8 FRK-2.0.2/FRK/MD5 | 32 FRK-2.0.2/FRK/R/FRK_wrapper.R | 536 +-- FRK-2.0.2/FRK/R/SREfit.R | 2544 ++++++++-------- FRK-2.0.2/FRK/R/SREpredict.R | 1804 +++++------ FRK-2.0.2/FRK/R/check_args.R | 586 +-- FRK-2.0.2/FRK/R/geometryfns.R | 4054 +++++++++++++------------- FRK-2.0.2/FRK/R/zzz.R | 38 FRK-2.0.2/FRK/inst/doc/FRK_intro.Rnw | 5 FRK-2.0.2/FRK/inst/doc/FRK_intro.pdf |binary FRK-2.0.2/FRK/inst/doc/FRK_non-Gaussian.pdf |binary FRK-2.0.2/FRK/src/FRK-win.def | 6 FRK-2.0.2/FRK/tests/testthat/test_basis.R | 278 - FRK-2.0.2/FRK/tests/testthat/test_domains.R | 72 FRK-2.0.2/FRK/tests/testthat/test_linalg.R | 52 FRK-2.0.2/FRK/vignettes/FRK_intro.Rnw | 5 18 files changed, 5004 insertions(+), 5016 deletions(-)
Title: Visualise and Explore the Deep Dependencies of R Packages
Description: Provides tools for exploration of R package dependencies.
The main deepdep() function allows to acquire deep dependencies of any package and plot them in an elegant way.
It also adds some popularity measures for the packages e.g. in the form of download count through the 'cranlogs' package.
Uses the CRAN metadata database <http://crandb.r-pkg.org> and Bioconductor metadata <http://bioconductor.org>.
Other data acquire functions are: get_dependencies(), get_downloads() and get_description().
The deepdep_shiny() function runs shiny application that helps to produce a nice 'deepdep' plot.
Author: Dominik Rafacz [aut, cre] (<https://orcid.org/0000-0003-0925-1909>),
Hubert Baniecki [aut],
Szymon Maksymiuk [aut],
Mateusz Bakala [aut]
Maintainer: Dominik Rafacz <dominikrafacz@gmail.com>
Diff between deepdep versions 0.2.5.3 dated 2021-06-07 and 0.2.5.4 dated 2021-11-16
DESCRIPTION | 9 MD5 | 38 build/vignette.rds |binary inst/doc/deepdep-comparison.Rmd | 8 inst/doc/deepdep-comparison.html | 10 inst/doc/deepdep-package.Rmd | 138 inst/doc/deepdep-package.html | 158 tests/fixtures/deepdep-1.yml |51155 +++++++++++++++++++------------------ tests/fixtures/deepdep-2.yml | 20 tests/fixtures/plot-1.yml | 523 tests/fixtures/plot-2.yml | 20 tests/testthat/test-deepdep.R | 2 vignettes/deepdep-comparison.Rmd | 8 vignettes/deepdep-package.Rmd | 138 vignettes/plot_dependencies1-1.png |binary vignettes/plot_dependencies1-2.png |binary vignettes/plot_dependencies2-1.png |binary vignettes/plot_dependencies3-1.png |binary vignettes/plot_dependencies4-1.png |binary vignettes/plot_dependencies5-1.png |binary 20 files changed, 27813 insertions(+), 24414 deletions(-)
Title: Implementation of the Bayesian Discount Prior Approach for
Clinical Trials
Description: Functions for data augmentation using the Bayesian discount prior
method for single arm and two-arm clinical trials, as described in Haddad
et al. (2017) <doi:10.1080/10543406.2017.1300907>. The discount power prior
methodology was developed in collaboration with the The Medical Device
Innovation Consortium (MDIC) Computer Modeling & Simulation Working Group.
Author: Shawn Balcome [aut],
Donnie Musgrove [aut],
Tarek Haddad [aut],
Graeme L. Hickey [cre, aut] (<https://orcid.org/0000-0002-4989-0054>),
Christopher Jackson [ctb] (For the ppexp R code that was ported to
C++.)
Maintainer: Graeme L. Hickey <graemeleehickey@gmail.com>
Diff between bayesDP versions 1.3.4 dated 2021-01-06 and 1.3.5 dated 2021-11-16
bayesDP-1.3.4/bayesDP/man/plot-bdpbinomial-method.Rd |only bayesDP-1.3.4/bayesDP/man/plot-bdpnormal-method.Rd |only bayesDP-1.3.4/bayesDP/man/plot-bdpsurvival-method.Rd |only bayesDP-1.3.5/bayesDP/DESCRIPTION | 37 +-- bayesDP-1.3.5/bayesDP/MD5 | 34 +-- bayesDP-1.3.5/bayesDP/NEWS.md | 22 +- bayesDP-1.3.5/bayesDP/R/bdpbinomial.R | 68 +++--- bayesDP-1.3.5/bayesDP/R/bdpnormal.R | 74 +++--- bayesDP-1.3.5/bayesDP/R/bdpsurvival.R | 162 +++++++-------- bayesDP-1.3.5/bayesDP/README.md | 28 -- bayesDP-1.3.5/bayesDP/inst/doc/bdpbinomial-vignette.html | 41 ++- bayesDP-1.3.5/bayesDP/inst/doc/bdplm-vignette.html | 29 ++ bayesDP-1.3.5/bayesDP/inst/doc/bdpnormal-vignette.html | 41 ++- bayesDP-1.3.5/bayesDP/inst/doc/bdpsurvival-vignette.html | 33 ++- bayesDP-1.3.5/bayesDP/man/bdpbinomial.Rd | 4 bayesDP-1.3.5/bayesDP/man/bdpnormal.Rd | 4 bayesDP-1.3.5/bayesDP/man/bdpsurvival.Rd | 4 bayesDP-1.3.5/bayesDP/man/plot-bdpbinomial-ANY-method.Rd |only bayesDP-1.3.5/bayesDP/man/plot-bdpnormal-ANY-method.Rd |only bayesDP-1.3.5/bayesDP/man/plot-bdpsurvival-ANY-method.Rd |only bayesDP-1.3.5/bayesDP/src/RcppExports.cpp | 5 21 files changed, 333 insertions(+), 253 deletions(-)
Title: Interact with the 'PADRINO' IPM Database
Description: 'PADRINO' houses textual representations of
Integral Projection Models which can be converted from their
table format into full kernels to reproduce or extend an
already published analysis. 'Rpadrino' is an R interface to this database. For
more information on Integral Projection Models, see Easterling et al. (2000)
<doi:10.1890/0012-9658(2000)081[0694:SSSAAN]2.0.CO;2>, Merow et al. (2013)
<doi:10.1111/2041-210X.12146>, Rees et al. (2014) <doi:10.1111/1365-2656.12178>,
and Metcalf et al. (2015) <doi:10.1111/2041-210X.12405>. See Levin et al. (2021)
for more information on 'ipmr', the engine that powers model reconstruction
<doi:10.1111/2041-210X.13683>.
Author: Sam Levin [aut, cre] (<https://orcid.org/0000-0002-3289-9925>),
Aldo Compagnoni [aut],
Dylan Childs [aut],
Sanne Evers [aut],
Tomos Potter [aut],
Roberto Salguero-Gomez [aut],
Tiffany Knight [aut]
Maintainer: Sam Levin <levisc8@gmail.com>
Diff between Rpadrino versions 0.0.1 dated 2021-11-15 and 0.0.2 dated 2021-11-16
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- inst/doc/padrino-intro.html | 4 ++-- tests/testthat/Rplots.pdf |binary tests/testthat/test-ipmr_generics.R | 2 +- tests/testthat/test-pdb_report.R | 4 ++++ 6 files changed, 17 insertions(+), 13 deletions(-)
Title: Conventional and Fuzzy Data Envelopment Analysis
Description: Set of functions for Data Envelopment Analysis. It runs both classic and fuzzy DEA models.See: Banker, R.; Charnes, A.; Cooper, W.W. (1984). <doi:10.1287/mnsc.30.9.1078>, Charnes, A.; Cooper, W.W.; Rhodes, E. (1978). <doi:10.1016/0377-2217(78)90138-8> and Charnes, A.; Cooper, W.W.; Rhodes, E. (1981). <doi:10.1287/mnsc.27.6.668>.
Author: Vicente Coll-Serrano, Vicente Bolos, Rafael Benitez Suarez <rabesua@uv.es>
Maintainer: Vicente Bolos <vicente.bolos@uv.es>
Diff between deaR versions 1.2.3 dated 2021-03-28 and 1.2.4 dated 2021-11-16
DESCRIPTION | 8 MD5 | 44 +-- R/is.friends.R | 37 ++ R/maximal_friends.R | 138 ++++++++--- R/model_additive.R | 4 R/model_addsupereff.R | 4 R/model_basic.R | 8 R/model_rdm.R | 4 R/model_sbmeff.R | 27 +- R/model_sbmsupereff.R | 4 R/read_data.R | 562 ++++++++++++++++++++++----------------------- R/summary.dea.R | 8 build/partial.rdb |binary man/Grifell_Lovell_1999.Rd | 2 man/is.friends.Rd | 2 man/maximal_friends.Rd | 2 man/model_additive.Rd | 4 man/model_addsupereff.Rd | 4 man/model_basic.Rd | 8 man/model_rdm.Rd | 4 man/model_sbmeff.Rd | 6 man/model_sbmsupereff.Rd | 4 man/modelfuzzy_kaoliu.Rd | 2 23 files changed, 498 insertions(+), 388 deletions(-)
Title: Computes Proximity in Large Sparse Matrices
Description: Computes proximity between rows or columns of large matrices efficiently in C++.
Functions are optimised for large sparse matrices using the Armadillo and Intel TBB libraries.
Among several built-in similarity/distance measures, computation of correlation,
cosine similarity and Euclidean distance is particularly fast.
Author: Kohei Watanabe [cre, aut, cph]
(<https://orcid.org/0000-0001-6519-5265>),
Robrecht Cannoodt [aut] (<https://orcid.org/0000-0003-3641-729X>)
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between proxyC versions 0.2.2 dated 2021-10-27 and 0.2.3 dated 2021-11-16
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/proxy.R | 10 ++++++---- man/simil.Rd | 2 +- src/pair.cpp | 6 +++--- tests/testthat/test-simil.R | 10 +++++----- 7 files changed, 28 insertions(+), 22 deletions(-)
Title: R/Weka Interface
Description: An R interface to Weka (Version 3.9.3).
Weka is a collection of machine learning algorithms for data mining
tasks written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Package 'RWeka' contains the interface code, the
Weka jar is in a separate package 'RWekajars'. For more information
on Weka see <http://www.cs.waikato.ac.nz/ml/weka/>.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Christian Buchta [ctb],
Torsten Hothorn [ctb],
Alexandros Karatzoglou [ctb],
David Meyer [ctb],
Achim Zeileis [ctb] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between RWeka versions 0.4-43 dated 2020-08-23 and 0.4-44 dated 2021-11-16
CHANGELOG | 4 ++++ DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- R/graph.R | 12 ++++++------ R/interfaces.R | 4 ++-- R/zzz.R | 2 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/RWeka.Rnw | 2 +- inst/doc/RWeka.pdf |binary vignettes/RWeka.Rnw | 2 +- 11 files changed, 28 insertions(+), 24 deletions(-)
Title: Microbial Community Ecology Data Analysis
Description: A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity statistics, beta diversity statistics, differential abundance test and indicator taxon analysis, environmental data analysis, null model analysis, network analysis and functional analysis.
Author: Chi Liu [aut, cre],
Felipe R. P. Mansoldo [ctb],
Umer Zeeshan Ijaz [ctb],
Chenhao Li [ctb],
Yang Cao [ctb],
Minjie Yao [ctb],
Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between microeco versions 0.5.1 dated 2021-09-01 and 0.6.0 dated 2021-11-16
DESCRIPTION | 38 +++++++-------- MD5 | 40 +++++++-------- R/microtable.R | 112 +++++++++++++++++++++++++++++++++++--------- R/trans_abund.R | 1 R/trans_alpha.R | 43 +++++++++++----- R/trans_beta.R | 39 +++++++++++++-- R/trans_diff.R | 2 R/trans_env.R | 20 ++++++- R/trans_func.R | 20 +++++-- R/trans_network.R | 90 ++++++++++++++++++++++++++++++++--- R/trans_nullmodel.R | 29 ++++++++++- R/trans_venn.R | 124 +++++++++++++++++++++++++++---------------------- data/dataset.RData |binary man/microtable.Rd | 90 +++++++++++++++++++++++++++++++++-- man/trans_alpha.Rd | 10 +++ man/trans_beta.Rd | 10 +++ man/trans_env.Rd | 6 +- man/trans_func.Rd | 3 - man/trans_network.Rd | 123 ++++++++++++++++++++++++++++++++++++++++++++++++ man/trans_nullmodel.Rd | 49 ++++++++++++++++++- man/trans_venn.Rd | 7 +- 21 files changed, 685 insertions(+), 171 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-03 2.1.13
2020-03-31 2.1.11
2019-03-07 2.1.8
2016-06-13 2.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-05 0.6-4
2021-06-27 0.6-3
2020-04-09 0.6-2
Title: Classification with Matrix Variate Normal and t Distributions
Description: Provides sampling and density functions for matrix
variate normal, t, and inverted t distributions; ML estimation for matrix
variate normal and t distributions using the EM algorithm,
including some restrictions on the parameters; and classification by linear and
quadratic discriminant analysis for matrix variate normal and t
distributions described in Thompson et al. (2019) <doi:10.1080/10618600.2019.1696208>.
Performs clustering with matrix variate normal and t mixture models.
Author: Geoffrey Thompson [aut, cre] (<https://orcid.org/0000-0003-2436-8822>),
B. D. Ripley author of original lda and qda functions [ctb, cph],
W. N. Venables author of original lda and qda functions [ctb, cph]
Maintainer: Geoffrey Thompson <gzthompson@gmail.com>
Diff between MixMatrix versions 0.2.4 dated 2019-11-14 and 0.2.6 dated 2021-11-16
MixMatrix-0.2.4/MixMatrix/man/derivCS.Rd |only MixMatrix-0.2.6/MixMatrix/DESCRIPTION | 16 MixMatrix-0.2.6/MixMatrix/MD5 | 111 - MixMatrix-0.2.6/MixMatrix/NEWS.md | 12 MixMatrix-0.2.6/MixMatrix/R/MixMatrix.R | 3 MixMatrix-0.2.6/MixMatrix/R/inputchecks.R |only MixMatrix-0.2.6/MixMatrix/R/matnormlda.R | 1076 +++++---- MixMatrix-0.2.6/MixMatrix/R/matrixnorm.R | 539 ++-- MixMatrix-0.2.6/MixMatrix/R/matrixt.R | 283 +- MixMatrix-0.2.6/MixMatrix/R/matrixutils.R | 268 +- MixMatrix-0.2.6/MixMatrix/R/meanvarfunc.R | 342 +-- MixMatrix-0.2.6/MixMatrix/R/mixnorm.R | 1094 +++++----- MixMatrix-0.2.6/MixMatrix/R/mlmatrixt.R | 386 ++- MixMatrix-0.2.6/MixMatrix/README.md | 155 - MixMatrix-0.2.6/MixMatrix/build/partial.rdb |binary MixMatrix-0.2.6/MixMatrix/build/vignette.rds |binary MixMatrix-0.2.6/MixMatrix/inst/doc/discriminant-analysis.R | 52 MixMatrix-0.2.6/MixMatrix/inst/doc/discriminant-analysis.Rmd | 110 - MixMatrix-0.2.6/MixMatrix/inst/doc/discriminant-analysis.html | 870 +++++-- MixMatrix-0.2.6/MixMatrix/inst/doc/matrix-t-estimation.R | 18 MixMatrix-0.2.6/MixMatrix/inst/doc/matrix-t-estimation.Rmd | 2 MixMatrix-0.2.6/MixMatrix/inst/doc/matrix-t-estimation.html | 844 +++++-- MixMatrix-0.2.6/MixMatrix/inst/doc/matrixnormal.R | 22 MixMatrix-0.2.6/MixMatrix/inst/doc/matrixnormal.html | 959 +++++--- MixMatrix-0.2.6/MixMatrix/inst/doc/mixturemodel.R | 14 MixMatrix-0.2.6/MixMatrix/inst/doc/mixturemodel.html | 724 ++++-- MixMatrix-0.2.6/MixMatrix/man/ARgenerate.Rd | 11 MixMatrix-0.2.6/MixMatrix/man/CSgenerate.Rd | 8 MixMatrix-0.2.6/MixMatrix/man/MLmatrixnorm.Rd | 61 MixMatrix-0.2.6/MixMatrix/man/MLmatrixt.Rd | 101 MixMatrix-0.2.6/MixMatrix/man/MixMatrix.Rd | 1 MixMatrix-0.2.6/MixMatrix/man/init_matrixmixture.Rd | 59 MixMatrix-0.2.6/MixMatrix/man/matrixlda.Rd | 91 MixMatrix-0.2.6/MixMatrix/man/matrixmixture.Rd | 131 - MixMatrix-0.2.6/MixMatrix/man/matrixqda.Rd | 71 MixMatrix-0.2.6/MixMatrix/man/predict.matrixlda.Rd | 26 MixMatrix-0.2.6/MixMatrix/man/predict.matrixqda.Rd | 26 MixMatrix-0.2.6/MixMatrix/man/rmatrixinvt.Rd | 60 MixMatrix-0.2.6/MixMatrix/man/rmatrixnorm.Rd | 78 MixMatrix-0.2.6/MixMatrix/man/rmatrixt.Rd | 92 MixMatrix-0.2.6/MixMatrix/man/vardet.Rd | 3 MixMatrix-0.2.6/MixMatrix/src/RcppExports.cpp | 5 MixMatrix-0.2.6/MixMatrix/src/posdefsqrt.cpp | 71 MixMatrix-0.2.6/MixMatrix/src/stats.cpp | 70 MixMatrix-0.2.6/MixMatrix/src/utils.cpp | 42 MixMatrix-0.2.6/MixMatrix/tests/testthat/testinpdim.R | 586 +++-- MixMatrix-0.2.6/MixMatrix/tests/testthat/testinpinteg.R | 294 +- MixMatrix-0.2.6/MixMatrix/tests/testthat/testinput.R | 177 + MixMatrix-0.2.6/MixMatrix/tests/testthat/testmixsim.R | 328 +- MixMatrix-0.2.6/MixMatrix/tests/testthat/testoutput.R | 803 ++++--- MixMatrix-0.2.6/MixMatrix/vignettes/discriminant-analysis.Rmd | 110 - MixMatrix-0.2.6/MixMatrix/vignettes/matrix-t-estimation.Rmd | 2 MixMatrix-0.2.6/MixMatrix/vignettes/matrixnormal.bib | 5 MixMatrix-0.2.6/MixMatrix/vignettes/matrixnormal_cache |only MixMatrix-0.2.6/MixMatrix/vignettes/matrixpaper.bib | 2 55 files changed, 6606 insertions(+), 4608 deletions(-)
Title: Analytics, Data Mining & Machine Learning Sidekick
Description: Auxiliary package for better/faster analytics, visualization, data mining, and machine learning
tasks. With a wide variety of family functions, like Machine Learning, Data Wrangling,
Exploratory, and Scrapper, it helps the analyst or data scientist to get quick and robust
results, without the need of repetitive coding or extensive programming skills.
Author: Bernardo Lares [aut, cre]
Maintainer: Bernardo Lares <laresbernardo@gmail.com>
Diff between lares versions 5.0.2 dated 2021-09-10 and 5.0.3 dated 2021-11-16
lares-5.0.2/lares/man/gg_bars.Rd |only lares-5.0.2/lares/man/gg_colour_customs.Rd |only lares-5.0.2/lares/man/gg_text_customs.Rd |only lares-5.0.3/lares/DESCRIPTION | 8 lares-5.0.3/lares/MD5 | 144 ++++----- lares-5.0.3/lares/NAMESPACE | 12 lares-5.0.3/lares/R/checks.R | 9 lares-5.0.3/lares/R/clusters.R | 75 ++--- lares-5.0.3/lares/R/colour_palettes.R | 193 +++---------- lares-5.0.3/lares/R/correlations.R | 165 +++++------ lares-5.0.3/lares/R/cran.R | 4 lares-5.0.3/lares/R/dalex_explainers.R | 51 ++- lares-5.0.3/lares/R/dim_reduction.R | 14 lares-5.0.3/lares/R/distribution.R | 10 lares-5.0.3/lares/R/dropbox.R | 3 lares-5.0.3/lares/R/facebook.R | 16 - lares-5.0.3/lares/R/frequencies.R | 8 lares-5.0.3/lares/R/google_sheets.R | 3 lares-5.0.3/lares/R/lares.R | 9 lares-5.0.3/lares/R/lasso.R | 48 +-- lares-5.0.3/lares/R/model_functions.R | 5 lares-5.0.3/lares/R/model_metrics.R | 2 lares-5.0.3/lares/R/model_plots.R | 6 lares-5.0.3/lares/R/model_predict.R | 7 lares-5.0.3/lares/R/onehotencoding.R | 17 - lares-5.0.3/lares/R/other_functions.R | 22 - lares-5.0.3/lares/R/other_plots.R | 195 ------------- lares-5.0.3/lares/R/plot_scales.R |only lares-5.0.3/lares/R/shapley.R | 5 lares-5.0.3/lares/R/statusbar.R | 2 lares-5.0.3/lares/R/stocks.R | 33 +- lares-5.0.3/lares/R/text_mining.R | 15 - lares-5.0.3/lares/R/theme_lares.R | 148 ++++++++-- lares-5.0.3/lares/R/zzz.R | 51 +++ lares-5.0.3/lares/README.md | 2 lares-5.0.3/lares/build/vignette.rds |binary lares-5.0.3/lares/inst/doc/h2o_automl.Rmd | 6 lares-5.0.3/lares/inst/doc/h2o_automl.html | 424 ++++++++++++++--------------- lares-5.0.3/lares/man/ROC.Rd | 2 lares-5.0.3/lares/man/check_attr.Rd | 6 lares-5.0.3/lares/man/clusterKmeans.Rd | 2 lares-5.0.3/lares/man/corr.Rd | 24 + lares-5.0.3/lares/man/corr_cross.Rd | 6 lares-5.0.3/lares/man/corr_var.Rd | 8 lares-5.0.3/lares/man/cran_logs.Rd | 4 lares-5.0.3/lares/man/dalex_variable.Rd | 4 lares-5.0.3/lares/man/distr.Rd | 4 lares-5.0.3/lares/man/fb_accounts.Rd | 2 lares-5.0.3/lares/man/fb_ads.Rd | 2 lares-5.0.3/lares/man/fb_creatives.Rd | 2 lares-5.0.3/lares/man/fb_insights.Rd | 2 lares-5.0.3/lares/man/fb_post.Rd | 2 lares-5.0.3/lares/man/fb_posts.Rd | 2 lares-5.0.3/lares/man/fb_rf.Rd | 2 lares-5.0.3/lares/man/fb_token.Rd | 2 lares-5.0.3/lares/man/freqs.Rd | 2 lares-5.0.3/lares/man/freqs_df.Rd | 2 lares-5.0.3/lares/man/freqs_list.Rd | 4 lares-5.0.3/lares/man/freqs_plot.Rd | 2 lares-5.0.3/lares/man/gg_fill_customs.Rd | 76 ++++- lares-5.0.3/lares/man/h2o_automl.Rd | 7 lares-5.0.3/lares/man/h2o_explainer.Rd | 5 lares-5.0.3/lares/man/lares_pal.Rd | 19 - lares-5.0.3/lares/man/lasso_vars.Rd | 2 lares-5.0.3/lares/man/noPlot.Rd | 2 lares-5.0.3/lares/man/plot_chord.Rd | 2 lares-5.0.3/lares/man/plot_palette.Rd | 9 lares-5.0.3/lares/man/plot_survey.Rd | 2 lares-5.0.3/lares/man/plot_timeline.Rd | 2 lares-5.0.3/lares/man/scale_x_comma.Rd | 2 lares-5.0.3/lares/man/stocks_hist.Rd | 13 lares-5.0.3/lares/man/textTokenizer.Rd | 4 lares-5.0.3/lares/man/theme_lares.Rd | 23 - lares-5.0.3/lares/man/tree_var.Rd | 4 lares-5.0.3/lares/vignettes/h2o_automl.Rmd | 6 75 files changed, 986 insertions(+), 990 deletions(-)
Title: Classical k-gram Language Models
Description: Tools for training and evaluating k-gram language models in R,
supporting several probability smoothing techniques,
perplexity computations, random text generation and more.
Author: Valerio Gherardi [aut, cre] (<https://orcid.org/0000-0002-8215-3013>)
Maintainer: Valerio Gherardi <vgherard840@gmail.com>
Diff between kgrams versions 0.1.0 dated 2021-02-15 and 0.1.2 dated 2021-11-16
kgrams-0.1.0/kgrams/src/Makevars |only kgrams-0.1.0/kgrams/tests/testthat/test-kgram_counts.R |only kgrams-0.1.0/kgrams/tests/testthat/test-smoothing_methods.R |only kgrams-0.1.2/kgrams/DESCRIPTION | 15 kgrams-0.1.2/kgrams/MD5 | 96 - kgrams-0.1.2/kgrams/NAMESPACE | 9 kgrams-0.1.2/kgrams/NEWS.md |only kgrams-0.1.2/kgrams/R/assertions.R |only kgrams-0.1.2/kgrams/R/dictionary.R | 182 +- kgrams-0.1.2/kgrams/R/kgram_freqs.R | 113 + kgrams-0.1.2/kgrams/R/language_model.R | 45 kgrams-0.1.2/kgrams/R/parameters.R | 83 - kgrams-0.1.2/kgrams/R/perplexity.R | 32 kgrams-0.1.2/kgrams/R/probability.R | 64 - kgrams-0.1.2/kgrams/R/query.R | 23 kgrams-0.1.2/kgrams/R/sample_sentences.R | 11 kgrams-0.1.2/kgrams/R/smoothers.R | 14 kgrams-0.1.2/kgrams/R/special_tokens.R | 6 kgrams-0.1.2/kgrams/R/validate_smoother.R | 49 kgrams-0.1.2/kgrams/R/word_context.R | 10 kgrams-0.1.2/kgrams/README.md | 79 - kgrams-0.1.2/kgrams/build/partial.rdb |binary kgrams-0.1.2/kgrams/build/vignette.rds |binary kgrams-0.1.2/kgrams/inst/REFERENCES.bib | 2 kgrams-0.1.2/kgrams/inst/doc/kgrams.R | 2 kgrams-0.1.2/kgrams/inst/doc/kgrams.Rmd | 10 kgrams-0.1.2/kgrams/inst/doc/kgrams.html | 639 +++------- kgrams-0.1.2/kgrams/man/dictionary.Rd | 57 kgrams-0.1.2/kgrams/man/kgram_freqs.Rd | 14 kgrams-0.1.2/kgrams/man/kgrams-package.Rd | 15 kgrams-0.1.2/kgrams/man/language_model.Rd | 10 kgrams-0.1.2/kgrams/man/perplexity.Rd | 10 kgrams-0.1.2/kgrams/man/probability.Rd | 21 kgrams-0.1.2/kgrams/man/query.Rd | 12 kgrams-0.1.2/kgrams/man/sample_sentences.Rd | 4 kgrams-0.1.2/kgrams/man/smoothers.Rd | 5 kgrams-0.1.2/kgrams/man/special_tokens.Rd | 6 kgrams-0.1.2/kgrams/src/DictionaryR.cpp | 67 - kgrams-0.1.2/kgrams/src/RcppExports.cpp | 9 kgrams-0.1.2/kgrams/src/Smoothing.cpp | 46 kgrams-0.1.2/kgrams/src/UtilitiesR.cpp | 18 kgrams-0.1.2/kgrams/src/kgramFreqs.cpp | 4 kgrams-0.1.2/kgrams/tests/testthat/test-assertions.R |only kgrams-0.1.2/kgrams/tests/testthat/test-dictionary.R |only kgrams-0.1.2/kgrams/tests/testthat/test-functional-kgram_counts.R |only kgrams-0.1.2/kgrams/tests/testthat/test-functional-smoothing_methods.R |only kgrams-0.1.2/kgrams/tests/testthat/test-kgram_freqs.R |only kgrams-0.1.2/kgrams/tests/testthat/test-language_model.R |only kgrams-0.1.2/kgrams/tests/testthat/test-parameters.R |only kgrams-0.1.2/kgrams/tests/testthat/test-perplexity.R |only kgrams-0.1.2/kgrams/tests/testthat/test-preprocess.R |only kgrams-0.1.2/kgrams/tests/testthat/test-probability.R |only kgrams-0.1.2/kgrams/tests/testthat/test-query.R |only kgrams-0.1.2/kgrams/tests/testthat/test-sample_sentences.R |only kgrams-0.1.2/kgrams/tests/testthat/test-smoothers.R |only kgrams-0.1.2/kgrams/tests/testthat/test-string_concatenation.R |only kgrams-0.1.2/kgrams/tests/testthat/test-tokenize_sentences.R |only kgrams-0.1.2/kgrams/tests/testthat/test-validate_smoother.R |only kgrams-0.1.2/kgrams/tests/testthat/test-word_context.R |only kgrams-0.1.2/kgrams/vignettes/kgrams.Rmd | 10 60 files changed, 832 insertions(+), 960 deletions(-)
Title: Hidden State Speciation and Extinction
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.
Author: Jeremy Beaulieu [aut, cre],
Brian O'Meara [aut],
Daniel Caetano [aut],
James Boyko [aut],
Thais Vasconcelos [aut]
Maintainer: Jeremy Beaulieu <jmbeauli@uark.edu>
Diff between hisse versions 2.1.5 dated 2021-11-11 and 2.1.6 dated 2021-11-16
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/misse.R | 1 - inst/doc/Clade-specific-sampling.pdf |binary inst/doc/GeoHiSSE-vignette.pdf |binary inst/doc/MiSSE-vignette.pdf |binary inst/doc/MuHiSSE-vignette.pdf |binary inst/doc/adding_fossils.pdf |binary inst/doc/hisse-fisse-type1-vignette.pdf |binary inst/doc/hisse-new-vignette.pdf |binary inst/doc/hisse-vignette.pdf |binary 11 files changed, 14 insertions(+), 15 deletions(-)
Title: Diagnostic Plot and Multivariate Summary Statistics of Weighted
Samples from Importance Sampling
Description: Fast functions for effective sample size, weighted multivariate
mean, variance, and quantile computation, and weight diagnostic plot for
generic importance sampling type or other probability weighted samples.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between diagis versions 0.1.5 dated 2020-06-04 and 0.2.1 dated 2021-11-16
diagis-0.1.5/diagis/inst/doc/diagis.pdf |only diagis-0.2.1/diagis/DESCRIPTION | 19 - diagis-0.2.1/diagis/MD5 | 31 - diagis-0.2.1/diagis/NAMESPACE | 5 diagis-0.2.1/diagis/NEWS | 68 ++- diagis-0.2.1/diagis/R/means.R | 384 ++++++++++----------- diagis-0.2.1/diagis/R/ses.R | 133 +++---- diagis-0.2.1/diagis/R/vars.R | 270 +++++++------- diagis-0.2.1/diagis/R/weighted_quantile.R |only diagis-0.2.1/diagis/build/vignette.rds |binary diagis-0.2.1/diagis/inst/CITATION | 18 diagis-0.2.1/diagis/inst/doc/diagis.Rmd | 178 ++++----- diagis-0.2.1/diagis/inst/doc/diagis.html |only diagis-0.2.1/diagis/man/weighted_quantile.Rd |only diagis-0.2.1/diagis/man/weighted_se.Rd | 3 diagis-0.2.1/diagis/src/RcppExports.cpp | 5 diagis-0.2.1/diagis/tests/testthat/test-quantile.R |only diagis-0.2.1/diagis/vignettes/diagis.Rmd | 178 ++++----- diagis-0.2.1/diagis/vignettes/diagis.bib | 161 ++++---- 19 files changed, 744 insertions(+), 709 deletions(-)
Title: Deal with Dependencies
Description: Tools to help manage dependencies during package
development. This can retrieve all dependencies that are used in R
files in the "R" directory, in Rmd files in "vignettes" directory and
in 'roxygen2' documentation of functions. There is a function to
update the Description file of your package and a function to create a
file with the R commands to install all dependencies of your package.
All functions to retrieve dependencies of R scripts and Rmd files can
be used independently of a package development.
Author: Sébastien Rochette [cre, aut] (<https://orcid.org/0000-0002-1565-9313>),
Vincent Guyader [aut] (<https://orcid.org/0000-0003-0671-9270>,
previous maintainer),
ThinkR [cph, fnd]
Maintainer: Sébastien Rochette <sebastien@thinkr.fr>
Diff between attachment versions 0.2.3 dated 2021-11-10 and 0.2.4 dated 2021-11-16
attachment-0.2.3/attachment/inst/doc/fill-pkg-description.R |only attachment-0.2.3/attachment/inst/doc/fill-pkg-description.Rmd |only attachment-0.2.3/attachment/inst/doc/fill-pkg-description.html |only attachment-0.2.3/attachment/tests/testthat/test-att_to_desc_from_is.R |only attachment-0.2.3/attachment/vignettes/fill-pkg-description.Rmd |only attachment-0.2.4/attachment/DESCRIPTION | 6 attachment-0.2.4/attachment/MD5 | 35 attachment-0.2.4/attachment/NEWS.md | 16 attachment-0.2.4/attachment/R/att_to_description.R | 179 ---- attachment-0.2.4/attachment/R/set_remotes.R |only attachment-0.2.4/attachment/build/vignette.rds |binary attachment-0.2.4/attachment/inst/dependencies.R | 4 attachment-0.2.4/attachment/inst/doc/a-fill-pkg-description.R |only attachment-0.2.4/attachment/inst/doc/a-fill-pkg-description.Rmd |only attachment-0.2.4/attachment/inst/doc/a-fill-pkg-description.html |only attachment-0.2.4/attachment/inst/doc/b-bookdown-and-scripts.R |only attachment-0.2.4/attachment/inst/doc/b-bookdown-and-scripts.Rmd |only attachment-0.2.4/attachment/inst/doc/b-bookdown-and-scripts.html |only attachment-0.2.4/attachment/man/att_amend_desc.Rd | 9 attachment-0.2.4/attachment/man/att_to_desc_from_is.Rd | 12 attachment-0.2.4/attachment/man/find_remotes.Rd | 2 attachment-0.2.4/attachment/man/set_remotes_to_desc.Rd | 8 attachment-0.2.4/attachment/tests/testthat/test-set-remotes.R |only attachment-0.2.4/attachment/tests/testthat/test-to-description.R | 367 ++++++---- attachment-0.2.4/attachment/vignettes/a-fill-pkg-description.Rmd |only attachment-0.2.4/attachment/vignettes/b-bookdown-and-scripts.Rmd |only 26 files changed, 307 insertions(+), 331 deletions(-)
Title: Time Series Analysis and Computational Finance
Description: Time series analysis and computational finance.
Author: Adrian Trapletti [aut],
Kurt Hornik [aut, cre],
Blake LeBaron [ctb] (BDS test code)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tseries versions 0.10-48 dated 2020-12-04 and 0.10-49 dated 2021-11-16
ChangeLog | 17 +++++++++++++++++ DESCRIPTION | 6 +++--- MD5 | 32 ++++++++++++++++---------------- R/finance.R | 2 +- R/garch.R | 2 +- R/test.R | 2 +- build/partial.rdb |binary data/NelPlo.rda |binary data/USeconomic.rda |binary data/bev.rda |binary data/camp.rda |binary data/ice.river.rda |binary data/nino.rda |binary data/tcm.rda |binary data/tcmd.rda |binary man/bds.test.Rd | 2 +- man/irts-functions.Rd | 2 +- 17 files changed, 41 insertions(+), 24 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis with raster and vector data. Raster methods allow for low-level data manipulation as well as high-level global, local, zonal, and focal computation. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/terra/> to get started. 'terra' is very similar to the 'raster' package; but 'terra' can do more, is easier to use, and it is faster.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>),
Karl Forner [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>)
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 1.4-19 dated 2021-11-15 and 1.4-20 dated 2021-11-16
DESCRIPTION | 8 ++--- MD5 | 14 +++++----- NEWS.md | 10 ++++++- R/distance.R | 10 ++----- src/RcppFunctions.cpp | 2 - src/distRaster.cpp | 70 +++++++++++++++++++++++++++++++++++++++----------- src/geos_methods.cpp | 34 ++++++++++++++++++++++-- src/spatDataframe.cpp | 11 +++++-- 8 files changed, 117 insertions(+), 42 deletions(-)
Title: Early Testing for a Treatment Effect using Surrogate Marker
Information
Description: Provides functions to test for a treatment effect in terms of the difference in survival between a treatment group and a control group using surrogate marker information obtained at some early time point in a time-to-event outcome setting. Nonparametric kernel estimation is used to estimate the test statistic and perturbation resampling is used for variance estimation. More details will be available in the future in: Parast L, Cai T, Tian L (2019) ``Using a Surrogate Marker for Early Testing of a Treatment Effect" Biometrics, 75(4):1253-1263. <doi:10.1111/biom.13067>.
Author: Layla Parast
Maintainer: Layla Parast <parast@austin.utexas.edu>
Diff between SurrogateTest versions 1.2 dated 2020-03-29 and 1.3 dated 2021-11-16
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- man/design.study.Rd | 2 +- man/early.delta.test.Rd | 2 +- man/var.delta.eb.Rd | 2 +- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: A Collection of Smooth Tensor Estimation Methods
Description: A list of methods for estimating a smooth tensor with an unknown permutation. It also contains several multi-variate functions for generating permuted signal tensors and corresponding observed tensors. For a detailed introduction for the model and estimation techniques, see the paper by Chanwoo Lee and Miaoyan Wang (2021) "Smooth tensor estimation with unknown permutations" <arXiv:2111.04681>.
Author: Chanwoo Lee [aut, cre],
Miaoyan Wang [aut]
Maintainer: Chanwoo Lee <chanwoo.lee@wisc.edu>
Diff between SmoothTensor versions 0.1.0 dated 2021-11-10 and 0.1.1 dated 2021-11-16
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS.md | 3 ++- R/smoothT.R | 10 +++++----- man/Borda_count.Rd | 2 +- man/Spectral.Rd | 2 +- man/simulation.Rd | 2 +- man/simulation_asym.Rd | 2 +- man/simulation_bin.Rd | 2 +- 9 files changed, 25 insertions(+), 24 deletions(-)
Title: Estimation for Scale-Shape Mixtures of Skew-Normal Distributions
Description: Provide data generation and estimation tools for the multivariate scale mixtures of normal
presented in Lange and Sinsheimer (1993) <doi:10.2307/1390698>, the multivariate scale
mixtures of skew-normal presented in Zeller, Lachos and Vilca (2011)
<doi:10.1080/02664760903406504>, the multivariate skew scale mixtures of normal
presented in Louredo, Zeller and Ferreira (2021) <doi:10.1007/s13571-021-00257-y>
and the multivariate scale mixtures of skew-normal-Cauchy presented in Kahrari et al. (2020)
<doi:10.1080/03610918.2020.1804582>.
Author: Clecio Ferreira [aut],
Diego Gallardo [aut, cre],
Camila Zeller [aut]
Maintainer: Diego Gallardo <diego.gallardo@uda.cl>
Diff between skewMLRM versions 1.3 dated 2021-11-06 and 1.4 dated 2021-11-16
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 3 +++ R/choose.MSMSN.R | 10 ++++++---- R/choose.MSMSNC.R | 10 ++++++---- 5 files changed, 23 insertions(+), 16 deletions(-)
Title: Calculating Bilateral and Multilateral Price Indexes
Description: Preparing a scanner data set for price dynamics calculations (data selecting, data classification, data matching, data filtering). Computing bilateral and multilateral indexes. For details on these methods see: de Haan and Krsinich (2017) <doi:10.1111/roiw.12304> and Diewert and Fox (2020)
<doi:10.1080/07350015.2020.1816176>.
Author: Jacek Białek [aut, cre] (<https://orcid.org/0000-0002-0952-5327>)
Maintainer: Jacek Białek <jacek.bialek@uni.lodz.pl>
Diff between PriceIndices versions 0.0.5 dated 2021-05-20 and 0.0.6 dated 2021-11-16
DESCRIPTION | 6 MD5 | 93 NAMESPACE | 37 NEWS.md | 15 R/PriceIndices.R | 82 R/functions.R | 408 ++- R/functions_internal.R | 488 ++++ R/functions_new.R | 3190 +++++++++++++++++++++++++++++- R/milk.R | 4 README.md | 393 ++- data/milk.rda |binary inst/doc/PriceIndices.R | 11 inst/doc/PriceIndices.Rmd | 73 inst/doc/PriceIndices.html | 212 + man/PriceIndices.Rd | 82 man/compare_distances.Rd |only man/figures/README-unnamed-chunk-16-1.png |binary man/figures/README-unnamed-chunk-17-1.png |binary man/figures/README-unnamed-chunk-29-1.png |binary man/figures/README-unnamed-chunk-35-1.png |binary man/figures/README-unnamed-chunk-36-1.png |binary man/figures/README-unnamed-chunk-37-1.png |binary man/figures/README-unnamed-chunk-39-1.png |binary man/figures/README-unnamed-chunk-56-1.png |binary man/figures/README-unnamed-chunk-58-1.png |binary man/geksaqi.Rd |only man/geksaqi_fbew.Rd |only man/geksaqi_fbmw.Rd |only man/geksaqi_splice.Rd |only man/geksaqu.Rd |only man/geksaqu_fbew.Rd |only man/geksaqu_fbmw.Rd |only man/geksaqu_splice.Rd |only man/geksgaqi.Rd |only man/geksgaqi_fbew.Rd |only man/geksgaqi_fbmw.Rd |only man/geksgaqi_splice.Rd |only man/geksgl.Rd |only man/geksgl_fbew.Rd |only man/geksgl_fbmw.Rd |only man/geksgl_splice.Rd |only man/geksl_fbew.Rd | 2 man/matched_fig.Rd | 20 man/milk.Rd | 4 man/wgeks.Rd |only man/wgeks_fbew.Rd |only man/wgeks_fbmw.Rd |only man/wgeks_splice.Rd |only man/wgeksaqi.Rd |only man/wgeksaqi_fbew.Rd |only man/wgeksaqi_fbmw.Rd |only man/wgeksaqi_splice.Rd |only man/wgeksaqu.Rd |only man/wgeksaqu_fbew.Rd |only man/wgeksaqu_fbmw.Rd |only man/wgeksaqu_splice.Rd |only man/wgeksgaqi.Rd |only man/wgeksgaqi_fbew.Rd |only man/wgeksgaqi_fbmw.Rd |only man/wgeksgaqi_splice.Rd |only man/wgeksgl.Rd |only man/wgeksgl_fbew.Rd |only man/wgeksgl_fbmw.Rd |only man/wgeksgl_splice.Rd |only tests/testthat/testing_indices.R | 4 vignettes/PriceIndices.Rmd | 73 66 files changed, 4798 insertions(+), 399 deletions(-)
Title: Management Strategy Evaluation Toolkit
Description: Development, simulation testing, and implementation of management procedures for fisheries
(see Carruthers & Hordyk (2018) <doi:10.1111/2041-210X.13081>).
Author: Adrian Hordyk [aut, cre],
Quang Huynh [aut],
Tom Carruthers [aut],
Chris Grandin [ctb] (iSCAM functions)
Maintainer: Adrian Hordyk <adrian@bluematterscience.com>
Diff between MSEtool versions 3.2.0 dated 2021-08-13 and 3.3.0 dated 2021-11-16
DESCRIPTION | 6 MD5 | 81 ++++----- NAMESPACE | 1 NEWS.md | 16 + R/Awatea2OM.R | 408 ++++++++++++++++++++++++++++--------------------- R/DFO.R | 101 ++++++++---- R/Data_Functions.R | 69 ++++++++ R/Data_make_update.R | 14 + R/MSE_functions.R | 1 R/Misc_Internal.R | 3 R/Movement_calcs.R | 102 ++++++++---- R/OM_functions.R | 1 R/RcppExports.R | 13 - R/SS2MOM_plots.R | 80 +++++++-- R/SS2OM.R | 184 +++++++++++++++------- R/SSinternal.R | 123 +++++++++----- R/SampleOM.R | 31 ++- R/Turing.R | 2 R/VPA2OM.R | 27 +-- R/aaImportFrom.R | 2 R/applyMMP.R | 5 R/iSCAM2OM.R | 241 ++++++++++++++++++---------- R/multiMSE.R | 218 +++++++++++++++++++------- R/multiMSE_internal.R | 9 - R/popdyn.R | 49 +++-- R/popdyn_MICE.R | 8 R/runMSE.R | 56 +++++- README.md | 2 inst/Rmd/Hist/Hist.Rmd | 2 inst/Rmd/SS/SS2MOM.Rmd | 2 inst/Rmd/SS/SS2OM.Rmd | 22 ++ man/Awatea2OM.Rd |only man/MSYCalcs.Rd | 13 - man/Sub.Rd | 3 man/SubCpars.Rd | 9 - man/SubOM.Rd | 59 +++---- man/iSCAM2OM.Rd | 34 +++- man/multiMSE.Rd | 10 - man/optMSY_eq.Rd | 3 man/simmov.Rd | 13 + src/MSYcalcs.cpp | 63 +++++-- src/RcppExports.cpp | 18 +- 42 files changed, 1419 insertions(+), 685 deletions(-)
Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Creates matrix population models for use in population ecological
analyses. Specializes on the construction of historical matrices,
which are 2d matrices comprising 3 consecutive times of demographic
information. Estimates both raw and function-based forms of
historical and standard ahistorical matrices. It also estimates
function-based age-by-stage matrices. Methodology based on Ehrlen
(2000) <doi:10.1890/0012-9658(2000)081[1675:TDOPPD]2.0.CO;2> and
deVries and Caswell (2018) <doi:10.1007/s12080-017-0353-0>.
Author: Richard P. Shefferson [aut, cre]
(<https://orcid.org/0000-0002-5234-3131>),
Johan Ehrlen [aut] (<https://orcid.org/0000-0001-8539-8967>)
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>
Diff between lefko3 versions 3.8.0 dated 2021-09-08 and 4.0.1 dated 2021-11-16
lefko3-3.8.0/lefko3/inst/doc/Chapter9.R |only lefko3-3.8.0/lefko3/vignettes/Ch2.19-1.png |only lefko3-3.8.0/lefko3/vignettes/Ch2.27-1.png |only lefko3-3.8.0/lefko3/vignettes/Ch2.39-1.png |only lefko3-3.8.0/lefko3/vignettes/Ch5.24-1.png |only lefko3-3.8.0/lefko3/vignettes/Ch5.25-1.png |only lefko3-3.8.0/lefko3/vignettes/Ch5.30-1.png |only lefko3-3.8.0/lefko3/vignettes/Ch5.31-1.png |only lefko3-3.8.0/lefko3/vignettes/Ch5.32-1.png |only lefko3-3.8.0/lefko3/vignettes/Ch5.4-1.png |only lefko3-3.8.0/lefko3/vignettes/Ch8.13-1.png |only lefko3-3.8.0/lefko3/vignettes/Ch8.19-1.png |only lefko3-3.8.0/lefko3/vignettes/Ch8.23-1.png |only lefko3-3.8.0/lefko3/vignettes/Ch8.28-1.png |only lefko3-3.8.0/lefko3/vignettes/Ch8.6-1.png |only lefko3-3.8.0/lefko3/vignettes/Ch8.8-1.png |only lefko3-4.0.1/lefko3/DESCRIPTION | 12 lefko3-4.0.1/lefko3/MD5 | 190 lefko3-4.0.1/lefko3/NAMESPACE | 2 lefko3-4.0.1/lefko3/NEWS | 147 lefko3-4.0.1/lefko3/R/RcppExports.R | 1137 +++- lefko3-4.0.1/lefko3/R/datamanag.R | 715 +-- lefko3-4.0.1/lefko3/R/errorchecks.R | 23 lefko3-4.0.1/lefko3/R/matrixcreation.R | 3235 ++++++++++---- lefko3-4.0.1/lefko3/R/modelselection.R | 5252 +++++++++++------------ lefko3-4.0.1/lefko3/R/popchar.R | 3512 ++++++--------- lefko3-4.0.1/lefko3/R/popdyn.R | 181 lefko3-4.0.1/lefko3/build/vignette.rds |binary lefko3-4.0.1/lefko3/inst/doc/Chapter1.Rmd | 262 - lefko3-4.0.1/lefko3/inst/doc/Chapter1.html | 280 - lefko3-4.0.1/lefko3/inst/doc/Chapter2.Rmd | 455 - lefko3-4.0.1/lefko3/inst/doc/Chapter2.html | 973 ++-- lefko3-4.0.1/lefko3/inst/doc/Chapter5.Rmd | 293 - lefko3-4.0.1/lefko3/inst/doc/Chapter5.html | 959 +--- lefko3-4.0.1/lefko3/inst/doc/Chapter6.Rmd | 175 lefko3-4.0.1/lefko3/inst/doc/Chapter6.html | 587 +- lefko3-4.0.1/lefko3/inst/doc/Chapter8.Rmd | 296 - lefko3-4.0.1/lefko3/inst/doc/Chapter8.html | 993 ++-- lefko3-4.0.1/lefko3/inst/doc/Chapter9.Rmd | 373 - lefko3-4.0.1/lefko3/inst/doc/Chapter9.html | 951 +--- lefko3-4.0.1/lefko3/man/aflefko2.Rd | 294 - lefko3-4.0.1/lefko3/man/density_input.Rd |only lefko3-4.0.1/lefko3/man/flefko2.Rd | 369 + lefko3-4.0.1/lefko3/man/flefko3.Rd | 378 + lefko3-4.0.1/lefko3/man/historicalize3.Rd | 170 lefko3-4.0.1/lefko3/man/modelsearch.Rd | 398 + lefko3-4.0.1/lefko3/man/overwrite.Rd | 21 lefko3-4.0.1/lefko3/man/projection3.Rd | 95 lefko3-4.0.1/lefko3/man/rlefko2.Rd | 82 lefko3-4.0.1/lefko3/man/rlefko3.Rd | 89 lefko3-4.0.1/lefko3/man/sf_create.Rd | 205 lefko3-4.0.1/lefko3/man/sf_distrib.Rd | 57 lefko3-4.0.1/lefko3/man/slambda3.Rd | 25 lefko3-4.0.1/lefko3/man/start_input.Rd |only lefko3-4.0.1/lefko3/man/summary.lefkoCondMat.Rd | 6 lefko3-4.0.1/lefko3/man/summary.lefkoMod.Rd | 5 lefko3-4.0.1/lefko3/man/summary.lefkoProj.Rd | 28 lefko3-4.0.1/lefko3/man/supplemental.Rd | 61 lefko3-4.0.1/lefko3/man/verticalize3.Rd | 148 lefko3-4.0.1/lefko3/src/DataManagement.cpp | 2296 ++++++---- lefko3-4.0.1/lefko3/src/MatrixEstimators.cpp | 3840 ++++++++++++++-- lefko3-4.0.1/lefko3/src/ModelSelection.cpp | 3283 ++++---------- lefko3-4.0.1/lefko3/src/RcppExports.cpp | 345 + lefko3-4.0.1/lefko3/src/popchar.cpp |only lefko3-4.0.1/lefko3/src/popdynamics.cpp | 993 +++- lefko3-4.0.1/lefko3/vignettes/Ch2.20-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch2.21-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch2.28-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch2.29-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch2.30-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch2.40-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch2.41-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch5.16-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch5.17-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch5.20-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch5.21-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch5.22-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch5.26-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch5.27-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch5.28-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch5.3-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch6.12-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch6.13-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch6.16-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch6.18-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch6.19-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch6.22-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch6.23-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch6.5-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch8.12-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch8.15-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch8.16-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch8.17-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch8.18-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch8.21-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch8.22-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch8.26-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch8.27-1.png |binary lefko3-4.0.1/lefko3/vignettes/Ch8.7-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch9.11-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch9.12-1.png |only lefko3-4.0.1/lefko3/vignettes/Ch9.7-1.png |only lefko3-4.0.1/lefko3/vignettes/Chapter1.Rmd | 262 - lefko3-4.0.1/lefko3/vignettes/Chapter2.Rmd | 455 - lefko3-4.0.1/lefko3/vignettes/Chapter2.Rmd.orig | 123 lefko3-4.0.1/lefko3/vignettes/Chapter5.Rmd | 293 - lefko3-4.0.1/lefko3/vignettes/Chapter5.Rmd.orig | 204 lefko3-4.0.1/lefko3/vignettes/Chapter6.Rmd | 175 lefko3-4.0.1/lefko3/vignettes/Chapter6.Rmd.orig | 25 lefko3-4.0.1/lefko3/vignettes/Chapter8.Rmd | 296 - lefko3-4.0.1/lefko3/vignettes/Chapter8.Rmd.orig | 123 lefko3-4.0.1/lefko3/vignettes/Chapter9.Rmd | 373 - lefko3-4.0.1/lefko3/vignettes/Chapter9.Rmd.orig |only lefko3-4.0.1/lefko3/vignettes/Lefko3Tutorial.bib | 160 114 files changed, 21352 insertions(+), 15328 deletions(-)
Title: Landmark Estimation of Survival and Treatment Effect
Description: Provides functions to estimate survival and a treatment effect using a landmark estimation approach.
Author: Layla Parast
Maintainer: Layla Parast <parast@austin.utexas.edu>
Diff between landest versions 1.0 dated 2015-11-15 and 1.1 dated 2021-11-16
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- man/delta.land.obs.Rd | 2 +- man/landest-package.Rd | 5 +---- man/surv.land.obs.Rd | 2 +- 5 files changed, 12 insertions(+), 15 deletions(-)
Title: General Transit Feed Specification (GTFS) Editing and Analysing
Tools
Description: Utility functions to read, manipulate, analyse and write
transit feeds in the General Transit Feed Specification (GTFS) data
format.
Author: Daniel Herszenhut [aut, cre] (<https://orcid.org/0000-0001-8066-1105>),
Rafael H. M. Pereira [aut] (<https://orcid.org/0000-0003-2125-7465>),
Pedro R. Andrade [aut] (<https://orcid.org/0000-0001-8675-4046>),
Joao Bazzo [aut] (<https://orcid.org/0000-0003-4536-5006>),
Mark Padgham [ctb],
Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Daniel Herszenhut <dhersz@gmail.com>
Diff between gtfstools versions 0.1.0 dated 2021-02-23 and 1.0.0 dated 2021-11-16
gtfstools-0.1.0/gtfstools/man/gtfs_date-class.Rd |only gtfstools-1.0.0/gtfstools/DESCRIPTION | 44 gtfstools-1.0.0/gtfstools/MD5 | 129 +- gtfstools-1.0.0/gtfstools/NAMESPACE | 13 gtfstools-1.0.0/gtfstools/NEWS.md |only gtfstools-1.0.0/gtfstools/R/convert_shapes_to_sf.R |only gtfstools-1.0.0/gtfstools/R/convert_stops_to_sf.R |only gtfstools-1.0.0/gtfstools/R/cpp11.R |only gtfstools-1.0.0/gtfstools/R/filter_by_route_id.R |only gtfstools-1.0.0/gtfstools/R/filter_by_route_type.R |only gtfstools-1.0.0/gtfstools/R/filter_by_sf.R |only gtfstools-1.0.0/gtfstools/R/filter_by_shape_id.R |only gtfstools-1.0.0/gtfstools/R/filter_by_stop_id.R |only gtfstools-1.0.0/gtfstools/R/filter_by_trip_id.R |only gtfstools-1.0.0/gtfstools/R/get_parent_station.R |only gtfstools-1.0.0/gtfstools/R/get_trip_duration.R | 11 gtfstools-1.0.0/gtfstools/R/get_trip_geometry.R | 132 +- gtfstools-1.0.0/gtfstools/R/get_trip_segment_duration.R | 11 gtfstools-1.0.0/gtfstools/R/get_trip_speed.R | 99 + gtfstools-1.0.0/gtfstools/R/gtfstools.R | 36 gtfstools-1.0.0/gtfstools/R/merge_gtfs.R | 26 gtfstools-1.0.0/gtfstools/R/read_gtfs.R | 305 +---- gtfstools-1.0.0/gtfstools/R/remove_duplicates.R |only gtfstools-1.0.0/gtfstools/R/set_trip_speed.R | 71 - 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Title: Generalized Dissimilarity Modeling
Description: A toolkit with functions to fit, plot, summarize, and apply Generalized Dissimilarity Models.
Author: Matt Fitzpatrick [aut, cre] (<https://orcid.org/0000-0003-1911-8407>),
Karel Mokany [aut] (<https://orcid.org/0000-0003-4199-3697>),
Glenn Manion [aut],
Diego Nieto-Lugilde [aut] (<https://orcid.org/0000-0003-4135-2881>),
Simon Ferrier [aut] (<https://orcid.org/0000-0001-7884-2388>),
Matthew Lisk [ctb],
Ware Chris [ctb],
Woolley Skip [ctb],
Harwood Tom [ctb]
Maintainer: Matt Fitzpatrick <mfitzpatrick@umces.edu>
Diff between gdm versions 1.4.2.2 dated 2021-03-17 and 1.5.0 dated 2021-11-16
gdm-1.4.2.2/gdm/R/GDM_Table_Funcs.R |only gdm-1.4.2.2/gdm/build |only gdm-1.4.2.2/gdm/data/gdm.RData |only gdm-1.4.2.2/gdm/inst/doc |only gdm-1.4.2.2/gdm/man/gdmExpData.Rd |only gdm-1.4.2.2/gdm/man/removeSitesFromSitePair.Rd |only gdm-1.4.2.2/gdm/man/stackedVars.Rd |only gdm-1.4.2.2/gdm/vignettes |only gdm-1.5.0/gdm/DESCRIPTION | 49 ++- gdm-1.5.0/gdm/MD5 | 71 ++-- gdm-1.5.0/gdm/NAMESPACE | 65 +++- gdm-1.5.0/gdm/R/data.R |only gdm-1.5.0/gdm/R/gdm-package.R |only gdm-1.5.0/gdm/R/gdm.calculate.deviance.R |only gdm-1.5.0/gdm/R/gdm.createsitepair.R |only gdm-1.5.0/gdm/R/gdm.crossvalidation.R |only gdm-1.5.0/gdm/R/gdm.fit.R |only gdm-1.5.0/gdm/R/gdm.formatsitepair.R |only gdm-1.5.0/gdm/R/gdm.ispline.extract.R |only gdm-1.5.0/gdm/R/gdm.partition.deviance.R |only gdm-1.5.0/gdm/R/gdm.permutate.sitepairtable.R |only gdm-1.5.0/gdm/R/gdm.permutate.variable.R |only gdm-1.5.0/gdm/R/gdm.plot.R |only gdm-1.5.0/gdm/R/gdm.plot.uncertainty.R |only gdm-1.5.0/gdm/R/gdm.predict.R |only gdm-1.5.0/gdm/R/gdm.single.crossvalidation.R |only gdm-1.5.0/gdm/R/gdm.subsample.sitepair.R |only gdm-1.5.0/gdm/R/gdm.summary.R |only gdm-1.5.0/gdm/R/gdm.transform.R |only gdm-1.5.0/gdm/R/gdm.variable.importance.R |only gdm-1.5.0/gdm/README.md |only gdm-1.5.0/gdm/data/gdmDissim.RData |only gdm-1.5.0/gdm/data/southwest.RData |only gdm-1.5.0/gdm/man/calculate.gdm.deviance.Rd |only gdm-1.5.0/gdm/man/createsitepair.Rd | 84 ++--- gdm-1.5.0/gdm/man/formatsitepair.Rd | 368 ++++++++++++++---------- gdm-1.5.0/gdm/man/gdm-package.Rd | 34 +- gdm-1.5.0/gdm/man/gdm.Rd | 203 ++++++++----- gdm-1.5.0/gdm/man/gdm.crossvalidation.Rd |only gdm-1.5.0/gdm/man/gdm.partition.deviance.Rd |only gdm-1.5.0/gdm/man/gdm.single.crossvalidation.Rd |only gdm-1.5.0/gdm/man/gdm.transform.Rd | 59 +-- gdm-1.5.0/gdm/man/gdm.varImp.Rd | 189 +++++++----- gdm-1.5.0/gdm/man/gdmDissim.Rd | 21 - gdm-1.5.0/gdm/man/isplineExtract.Rd | 60 ++- gdm-1.5.0/gdm/man/permutateSitePair.Rd | 54 +-- gdm-1.5.0/gdm/man/permutateVarSitePair.Rd | 56 +-- gdm-1.5.0/gdm/man/plot.gdm.Rd | 105 +++--- gdm-1.5.0/gdm/man/plotUncertainty.Rd | 131 ++++---- gdm-1.5.0/gdm/man/predict.gdm.Rd | 102 +++--- gdm-1.5.0/gdm/man/southwest.Rd |only gdm-1.5.0/gdm/man/subsample.sitepair.Rd |only gdm-1.5.0/gdm/man/summary.gdm.Rd | 47 +-- gdm-1.5.0/gdm/src/Gdmlib.cpp | 1 54 files changed, 970 insertions(+), 729 deletions(-)
Title: Convex Clustering Methods and Clustering Indexes
Description: Convex Clustering methods, including K-means algorithm,
On-line Update algorithm (Hard Competitive Learning) and Neural Gas
algorithm (Soft Competitive Learning), and calculation of several
indexes for finding the number of clusters in a data set.
Author: Evgenia Dimitriadou [aut],
Kurt Hornik [ctb, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between cclust versions 0.6-22 dated 2020-12-03 and 0.6-23 dated 2021-11-16
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/Rindexes.R | 6 +++--- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: POSIX System Utilities
Description: Bindings to system utilities found in most Unix systems such as
POSIX functions which are not part of the Standard C Library.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between unix versions 1.5.3 dated 2021-08-16 and 1.5.4 dated 2021-11-16
DESCRIPTION | 9 +++++---- MD5 | 10 +++++----- NEWS | 4 ++++ R/rlimit.R | 4 ++-- man/rlimit.Rd | 2 +- tests/testthat/test-forking.R | 4 +--- 6 files changed, 18 insertions(+), 15 deletions(-)
Title: A Tool Kit for Working with Time Series in R
Description: Easy visualization, wrangling, and feature engineering of time series data for
forecasting and machine learning prediction. Consolidates and extends time series functionality
from packages including 'dplyr', 'stats', 'xts', 'forecast', 'slider', 'padr', 'recipes', and 'rsample'.
Author: Matt Dancho [aut, cre],
Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between timetk versions 2.6.1 dated 2021-01-18 and 2.6.2 dated 2021-11-16
DESCRIPTION | 10 MD5 | 72 +-- NAMESPACE | 1 NEWS.md | 28 + R/00_global_vars.R | 2 R/coersion-tk_tbl.R | 9 R/dplyr-pad_by_time.R | 57 +- R/dplyr-summarise_by_time.R | 21 R/make-tk_make_timeseries.R | 34 + R/make-tk_make_timeseries_future.R | 80 +++ R/plot-acf_diagnostics.R | 6 R/plot-anomaly_diagnostics.R | 8 R/plot-time_series.R | 13 R/plot-time_series_regression.R | 44 +- R/recipes-step_fourier.R | 19 R/timetk-package.R | 1 R/vec-fourier.R | 34 + R/vec-lag.R | 14 README.md | 211 ++++------ inst/doc/TK04_Plotting_Time_Series.Rmd | 60 +- inst/doc/TK04_Plotting_Time_Series.html | 84 ++- inst/doc/TK07_Time_Series_Data_Wrangling.html | 55 +- man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/fourier_vec.Rd | 6 man/plot_acf_diagnostics.Rd | 2 man/plot_anomaly_diagnostics.Rd | 3 man/plot_time_series.Rd | 3 man/plot_time_series_regression.Rd | 3 man/summarise_by_time.Rd | 9 tests/testthat/test-tk_make_timeseries.R | 16 tests/testthat/test-tk_make_timeseries_future.R | 22 - tests/testthat/test-tk_tbl.R | 1 vignettes/TK04_Plotting_Time_Series.Rmd | 60 +- vignettes/temp_archive/TK03_Forecasting_Using_Time_Series_Signature.Rmd | 57 +- 37 files changed, 685 insertions(+), 360 deletions(-)
Title: Discrete Event Simulation in R and C++, with Tools for
Cost-Effectiveness Analysis
Description: Discrete event simulation using both R and C++ (Karlsson et al 2016; <doi:10.1109/eScience.2016.7870915>). The C++ code is adapted from the SSIM library <https://www.inf.usi.ch/carzaniga/ssim/>, allowing for both event-oriented and process-oriented simulation. The code includes a SummaryReport class for reporting events and costs by age and other covariates. The C++ code is available as a static library for linking to other packages. A priority queue implementation is given in C++ together with an S3 closure and a reference class implementation. Finally, some tools are provided for cost-effectiveness analysis.
Author: Mark Clements [aut, cre, cph],
Alexandra Jauhiainen [aut],
Andreas Karlsson [aut],
Antonio Carzaniga [cph],
University of Colorado [cph],
Pierre L'Ecuyer [cph]
Maintainer: Mark Clements <mark.clements@ki.se>
Diff between microsimulation versions 1.3.5 dated 2021-07-15 and 1.3.6 dated 2021-11-16
microsimulation-1.3.5/microsimulation/configure.ac |only microsimulation-1.3.5/microsimulation/inst/include/siena/tprocess.h |only microsimulation-1.3.5/microsimulation/inst/include/tprocess.cc |only microsimulation-1.3.5/microsimulation/inst/include/tprocessconf.h |only microsimulation-1.3.5/microsimulation/inst/include/tprocessconf.h.in |only microsimulation-1.3.5/microsimulation/src/tprocess.cc |only microsimulation-1.3.6/microsimulation/DESCRIPTION | 8 ++++---- microsimulation-1.3.6/microsimulation/MD5 | 10 ++-------- microsimulation-1.3.6/microsimulation/src/Makevars | 2 +- 9 files changed, 7 insertions(+), 13 deletions(-)
More information about microsimulation at CRAN
Permanent link
Title: The Induced Smoothed Lasso
Description: An implementation of the induced smoothing (IS) idea to lasso regularization models to allow estimation and inference on the model coefficients (currently hypothesis testing only). Linear, logistic, Poisson and gamma regressions with several link functions are implemented. The algorithm is described in the original paper: Cilluffo, G., Sottile, G., La Grutta, S. and Muggeo, V. (2019) The Induced Smoothed lasso: A practical framework for hypothesis testing in high dimensional regression. <doi:10.1177/0962280219842890>, and discussed in a tutorial: Sottile, G., Cilluffo, G., and Muggeo, V. (2019) The R package islasso: estimation and hypothesis testing in lasso regression. <doi:10.13140/RG.2.2.16360.11521>.
Author: Gianluca Sottile [aut, cre],
Giovanna Cilluffo [aut, ctb],
Vito MR Muggeo [aut, cre]
Maintainer: Gianluca Sottile <gianluca.sottile@unipa.it>
Diff between islasso versions 1.4.0 dated 2021-10-15 and 1.4.1 dated 2021-11-16
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-25 0.1.4
Title: The Exterior Calculus
Description: Provides functionality for working with tensors,
alternating tensors, wedge products, Stokes's theorem, and
related concepts from the exterior calculus. Functionality
for Grassman algebra is provided. The canonical reference
would be: M. Spivak (1965, ISBN:0-8053-9021-9) "Calculus on
Manifolds". Version stokes_1.0-8 is a reduced
functionality placeholder pending upload of spray version
1.0-16 to CRAN.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between stokes versions 1.0-8 dated 2021-05-10 and 1.0-9 dated 2021-11-16
stokes-1.0-8/stokes/build/vignette.rds |only stokes-1.0-8/stokes/inst/doc |only stokes-1.0-8/stokes/tests |only stokes-1.0-8/stokes/vignettes |only stokes-1.0-9/stokes/DESCRIPTION | 24 +++--- stokes-1.0-9/stokes/MD5 | 94 +++++++++---------------- stokes-1.0-9/stokes/NAMESPACE | 5 + stokes-1.0-9/stokes/R/mult.R | 55 +++++--------- stokes-1.0-9/stokes/R/ops.R | 10 +- stokes-1.0-9/stokes/README.md | 84 +++++++++++----------- stokes-1.0-9/stokes/build/partial.rdb |binary stokes-1.0-9/stokes/build/stokes.pdf |binary stokes-1.0-9/stokes/inst/stokes_stickermaker.R |only stokes-1.0-9/stokes/inst/stokes_theorem.pdf |only stokes-1.0-9/stokes/inst/stokes_theorem.png |only stokes-1.0-9/stokes/inst/stokes_theorem.tex |only stokes-1.0-9/stokes/man/Alt.Rd | 22 ++--- stokes-1.0-9/stokes/man/Ops.Rd | 14 --- stokes-1.0-9/stokes/man/as.1form.Rd | 19 +---- stokes-1.0-9/stokes/man/coeffs.Rd |only stokes-1.0-9/stokes/man/consolidate.Rd | 9 -- stokes-1.0-9/stokes/man/contract.Rd | 21 ----- stokes-1.0-9/stokes/man/cross.Rd | 22 ++--- stokes-1.0-9/stokes/man/figures |only stokes-1.0-9/stokes/man/hodge.Rd | 22 ++--- stokes-1.0-9/stokes/man/inner.Rd | 22 ----- stokes-1.0-9/stokes/man/issmall.Rd | 17 +--- stokes-1.0-9/stokes/man/keep.Rd | 16 ++-- stokes-1.0-9/stokes/man/kform.Rd | 55 +++++++------- stokes-1.0-9/stokes/man/ktensor.Rd | 38 ---------- stokes-1.0-9/stokes/man/print.Rd | 20 +---- stokes-1.0-9/stokes/man/rform.Rd | 22 ++--- stokes-1.0-9/stokes/man/scalar.Rd | 22 ++--- stokes-1.0-9/stokes/man/stokes-package.Rd | 55 +------------- stokes-1.0-9/stokes/man/symbolic.Rd | 14 +-- stokes-1.0-9/stokes/man/transform.Rd | 31 -------- stokes-1.0-9/stokes/man/volume.Rd | 19 +---- stokes-1.0-9/stokes/man/wedge.Rd | 16 ---- stokes-1.0-9/stokes/man/zap.Rd | 10 +- stokes-1.0-9/stokes/man/zero.Rd | 23 ++---- 40 files changed, 256 insertions(+), 525 deletions(-)
Title: Send Push Notifications using 'Pushover'
Description: Send push notifications to mobile devices or the desktop
using 'Pushover' <https://pushover.net>. These notifications can
display things such as results, job status, plots, or any other text
or numeric data.
Author: Brian Connelly [aut, cre] (<https://orcid.org/0000-0002-9948-0379>)
Maintainer: Brian Connelly <bdc@bconnelly.net>
Diff between pushoverr versions 1.0.0 dated 2016-11-23 and 1.1.0 dated 2021-11-16
pushoverr-1.0.0/pushoverr/R/is.pushover_sound.R |only pushoverr-1.0.0/pushoverr/R/is.valid_app.R |only pushoverr-1.0.0/pushoverr/R/is.valid_device.R |only pushoverr-1.0.0/pushoverr/R/is.valid_receipt.R |only pushoverr-1.0.0/pushoverr/R/is.valid_user.R |only pushoverr-1.0.0/pushoverr/R/pushoverr.R |only pushoverr-1.0.0/pushoverr/R/stop_for_pushover_status.R |only pushoverr-1.0.0/pushoverr/man/is.pushover_sound.Rd |only pushoverr-1.0.0/pushoverr/man/is.valid_app.Rd |only pushoverr-1.0.0/pushoverr/man/is.valid_device.Rd |only pushoverr-1.0.0/pushoverr/man/is.valid_receipt.Rd |only pushoverr-1.0.0/pushoverr/man/is.valid_user.Rd |only pushoverr-1.0.0/pushoverr/man/pushoverr.Rd |only pushoverr-1.0.0/pushoverr/man/stop_for_pushover_status.Rd |only pushoverr-1.1.0/pushoverr/DESCRIPTION | 37 +- pushoverr-1.1.0/pushoverr/MD5 | 107 ++++--- pushoverr-1.1.0/pushoverr/NAMESPACE | 18 - pushoverr-1.1.0/pushoverr/NEWS.md | 17 + pushoverr-1.1.0/pushoverr/R/cancel_retries.R | 44 +-- pushoverr-1.1.0/pushoverr/R/check_receipt.R | 56 ++- pushoverr-1.1.0/pushoverr/R/check_valid_app.R |only pushoverr-1.1.0/pushoverr/R/check_valid_device.R |only pushoverr-1.1.0/pushoverr/R/check_valid_receipt.R |only pushoverr-1.1.0/pushoverr/R/check_valid_sound.R |only pushoverr-1.1.0/pushoverr/R/check_valid_user.R |only pushoverr-1.1.0/pushoverr/R/get_devices.R | 42 +- pushoverr-1.1.0/pushoverr/R/get_group_info.R | 21 - pushoverr-1.1.0/pushoverr/R/get_pushover_limits.R | 35 +- pushoverr-1.1.0/pushoverr/R/get_pushover_sounds.R | 14 pushoverr-1.1.0/pushoverr/R/group_rename.R | 32 +- pushoverr-1.1.0/pushoverr/R/group_subscription.R | 150 +++++----- pushoverr-1.1.0/pushoverr/R/pushover.R | 204 ++++++++------ pushoverr-1.1.0/pushoverr/R/pushover_api.R | 60 ++-- pushoverr-1.1.0/pushoverr/R/pushover_sounds.R |only pushoverr-1.1.0/pushoverr/R/pushoverr-package.R |only pushoverr-1.1.0/pushoverr/R/set_pushover_app.R | 80 ++--- pushoverr-1.1.0/pushoverr/R/set_pushover_user.R | 89 ++---- pushoverr-1.1.0/pushoverr/R/update_glance.R | 125 ++++---- pushoverr-1.1.0/pushoverr/R/verify_user.R | 108 ++----- pushoverr-1.1.0/pushoverr/README.md | 190 ++++--------- pushoverr-1.1.0/pushoverr/build |only pushoverr-1.1.0/pushoverr/inst |only pushoverr-1.1.0/pushoverr/man/cancel_retries.Rd | 20 - pushoverr-1.1.0/pushoverr/man/check_receipt.Rd | 42 +- pushoverr-1.1.0/pushoverr/man/get_devices.Rd | 32 +- pushoverr-1.1.0/pushoverr/man/get_group_info.Rd | 13 pushoverr-1.1.0/pushoverr/man/get_pushover_limits.Rd | 17 - pushoverr-1.1.0/pushoverr/man/get_pushover_sounds.Rd | 3 pushoverr-1.1.0/pushoverr/man/group_rename.Rd | 15 - pushoverr-1.1.0/pushoverr/man/group_subscription.Rd | 67 ++-- pushoverr-1.1.0/pushoverr/man/pushover.Rd | 91 ++++-- pushoverr-1.1.0/pushoverr/man/pushover_api.Rd | 69 +++- pushoverr-1.1.0/pushoverr/man/pushoverr-package.Rd |only pushoverr-1.1.0/pushoverr/man/set_pushover_app.Rd | 31 -- pushoverr-1.1.0/pushoverr/man/set_pushover_user.Rd | 44 +-- pushoverr-1.1.0/pushoverr/man/update_glance.Rd | 38 +- pushoverr-1.1.0/pushoverr/man/verify_user.Rd | 55 +-- pushoverr-1.1.0/pushoverr/tests |only pushoverr-1.1.0/pushoverr/vignettes |only 59 files changed, 1013 insertions(+), 953 deletions(-)
Title: Toolkit for Time Related Data Presentation and Adding Colors to
Markdown or Shiny
Description: The purpose of this package is to provide
a collection of functions for
(1) aiding summarizing time related data;
(2) generating axis transformation from data; and
(3) aiding Markdown (with html output) and Shiny file editing.
Author: Y Hsu [aut, cre]
Maintainer: Y Hsu <yh202109@gmail.com>
Diff between mtb versions 0.1.0 dated 2021-11-02 and 0.1.1 dated 2021-11-16
mtb-0.1.0/mtb/tests/testthat/Rplots.pdf |only mtb-0.1.0/mtb/tests/testthat/testthat-problems.rds |only mtb-0.1.1/mtb/DESCRIPTION | 6 - mtb-0.1.1/mtb/MD5 | 57 +++++++++-------- mtb-0.1.1/mtb/NAMESPACE | 11 +++ mtb-0.1.1/mtb/NEWS.md | 12 +++ mtb-0.1.1/mtb/R/helper_axis.R | 43 +++++++----- mtb-0.1.1/mtb/R/helper_color.R | 14 ++-- mtb-0.1.1/mtb/R/helper_html.R | 54 +++++++++------- mtb-0.1.1/mtb/R/helper_timerelated.R |only mtb-0.1.1/mtb/R/ue_helper.R | 13 +++ mtb-0.1.1/mtb/README.md | 8 ++ mtb-0.1.1/mtb/build/vignette.rds |binary mtb-0.1.1/mtb/inst/doc/vignette_mtb_axis.Rmd | 2 mtb-0.1.1/mtb/inst/doc/vignette_mtb_axis.html | 12 +-- mtb-0.1.1/mtb/inst/doc/vignette_mtb_color.html | 4 - mtb-0.1.1/mtb/inst/doc/vignette_mtb_md.Rmd | 6 - mtb-0.1.1/mtb/inst/doc/vignette_mtb_md.html | 6 - mtb-0.1.1/mtb/inst/doc/vignette_mtb_timerelated.R |only mtb-0.1.1/mtb/inst/doc/vignette_mtb_timerelated.Rmd |only mtb-0.1.1/mtb/inst/doc/vignette_mtb_timerelated.html |only mtb-0.1.1/mtb/man/add_colored_box.Rd | 38 ++++++----- mtb-0.1.1/mtb/man/add_colored_str.Rd | 16 ++-- mtb-0.1.1/mtb/man/color_set_palette.Rd | 8 +- mtb-0.1.1/mtb/man/color_test_palette.Rd | 6 + mtb-0.1.1/mtb/man/time_plot_interval.Rd |only mtb-0.1.1/mtb/man/trans_composition.Rd | 26 +++++-- mtb-0.1.1/mtb/tests/testthat/test-helper_axis.R | 22 +++++- mtb-0.1.1/mtb/tests/testthat/test-helper_color.R | 8 ++ mtb-0.1.1/mtb/tests/testthat/test-helper_timerelated.R |only mtb-0.1.1/mtb/vignettes/vignette_mtb_axis.Rmd | 2 mtb-0.1.1/mtb/vignettes/vignette_mtb_datetime.R |only mtb-0.1.1/mtb/vignettes/vignette_mtb_datetime.html |only mtb-0.1.1/mtb/vignettes/vignette_mtb_md.Rmd | 6 - mtb-0.1.1/mtb/vignettes/vignette_mtb_timerelated.Rmd |only 35 files changed, 249 insertions(+), 131 deletions(-)
Title: Manage Spatial Metadata for Known Locations
Description: Utility functions for discovering and managing metadata
associated with spatially unique "known locations". Applications include
all fields of environmental monitoring (e.g. air and water quality) where
data are collected at stationary sites.
Author: Jonathan Callahan [aut, cre],
Eli Grosman [ctb],
Oliver Fogelin [ctb]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaLocationUtils versions 0.2.0 dated 2021-10-05 and 0.2.7 dated 2021-11-16
MazamaLocationUtils-0.2.0/MazamaLocationUtils/R/table_export.R |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/apiKeys.Rd |only MazamaLocationUtils-0.2.0/MazamaLocationUtils/man/table_export.Rd |only MazamaLocationUtils-0.2.7/MazamaLocationUtils/DESCRIPTION | 24 - MazamaLocationUtils-0.2.7/MazamaLocationUtils/MD5 | 154 +++--- MazamaLocationUtils-0.2.7/MazamaLocationUtils/NAMESPACE | 12 MazamaLocationUtils-0.2.7/MazamaLocationUtils/NEWS.md | 47 + MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/MazamaLocationUtils.R | 87 --- MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/data.R | 37 + MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/location_createID.R | 42 - MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/location_getCensusBlock.R | 18 MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/location_getSingleAddress_Photon.R | 32 - MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/location_getSingleAddress_TexasAM.R | 21 MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/location_getSingleElevation_USGS.R | 21 MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/location_initialize.R | 31 - MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/mazama_initialize.R | 19 MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_addColumn.R | 1 MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_addCoreMetadata.R | 10 MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_addLocation.R | 27 - MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_addSingleLocation.R | 38 - MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_findAdjacentDistances.R | 10 MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_getLocationID.R | 88 +++ MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_getNearestDistance.R | 46 + MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_getRecordIndex.R | 18 MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_initialize.R | 7 MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_initializeExisting.R | 41 - MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_leaflet.R | 239 ++++++---- MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_leafletAdd.R | 153 ++++-- MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_load.R | 2 MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_removeColumn.R | 15 MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_removeRecord.R | 1 MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_save.R | 9 MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/table_updateColumn.R | 8 MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/utils-APIKey.R |only MazamaLocationUtils-0.2.7/MazamaLocationUtils/R/utils.R | 95 --- MazamaLocationUtils-0.2.7/MazamaLocationUtils/README.md | 51 +- MazamaLocationUtils-0.2.7/MazamaLocationUtils/data/id_monitors_500.rda |binary MazamaLocationUtils-0.2.7/MazamaLocationUtils/data/or_monitors_500.rda |binary MazamaLocationUtils-0.2.7/MazamaLocationUtils/data/wa_airfire_meta.rda |binary MazamaLocationUtils-0.2.7/MazamaLocationUtils/data/wa_monitors_500.rda |binary MazamaLocationUtils-0.2.7/MazamaLocationUtils/inst/doc/MazamaLocationUtils.R | 12 MazamaLocationUtils-0.2.7/MazamaLocationUtils/inst/doc/MazamaLocationUtils.Rmd | 61 +- MazamaLocationUtils-0.2.7/MazamaLocationUtils/inst/doc/MazamaLocationUtils.html | 119 ++-- MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/MazamaLocationUtils.Rd | 4 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/getAPIKey.Rd | 19 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/id_monitors_500.Rd | 11 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/location_createID.Rd | 1 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/location_getCensusBlock.Rd | 16 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/location_getSingleAddress_Photon.Rd | 22 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/location_getSingleAddress_TexasAM.Rd | 21 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/location_getSingleElevation_USGS.Rd | 14 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/location_initialize.Rd | 23 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/mazama_initialize.Rd | 19 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/or_monitors_500.Rd | 11 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/setAPIKey.Rd | 21 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/showAPIKeys.Rd |only MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_addColumn.Rd | 1 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_addCoreMetadata.Rd | 2 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_addLocation.Rd | 27 - MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_addSingleLocation.Rd | 31 - MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_getLocationID.Rd | 1 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_getNearestDistance.Rd | 1 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_getRecordIndex.Rd | 1 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_initialize.Rd | 5 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_initializeExisting.Rd | 12 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_leaflet.Rd | 36 + MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_leafletAdd.Rd | 13 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_removeColumn.Rd | 13 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_removeRecord.Rd | 1 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_save.Rd | 3 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/table_updateColumn.Rd | 3 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/validateLonLat.Rd | 19 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/validateLonsLats.Rd | 22 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/wa_airfire_meta.Rd | 4 MazamaLocationUtils-0.2.7/MazamaLocationUtils/man/wa_monitors_500.Rd | 11 MazamaLocationUtils-0.2.7/MazamaLocationUtils/tests/testthat/test-table_findAdjacentDistances.R | 4 MazamaLocationUtils-0.2.7/MazamaLocationUtils/tests/testthat/test-table_getNearestLocation.R | 2 MazamaLocationUtils-0.2.7/MazamaLocationUtils/tests/testthat/test-table_initializeExisting.R |only MazamaLocationUtils-0.2.7/MazamaLocationUtils/tests/testthat/test-table_removeRecord.R | 4 MazamaLocationUtils-0.2.7/MazamaLocationUtils/tests/testthat/test-table_updateColumn.R | 17 MazamaLocationUtils-0.2.7/MazamaLocationUtils/vignettes/MazamaLocationUtils.Rmd | 61 +- 81 files changed, 1177 insertions(+), 895 deletions(-)
More information about MazamaLocationUtils at CRAN
Permanent link
Title: Transform Files to 'microtable' Object with 'microeco' Package
Description: Transform output files of some tools to the 'microtable' object of 'microtable' class in 'microeco' package. The 'microtable' class is the basic class in 'microeco' package and is necessary for the downstream microbial community data analysis.
Author: Chi Liu [aut, cre]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between file2meco versions 0.1.0 dated 2021-09-09 and 0.2.0 dated 2021-11-16
DESCRIPTION | 9 ++---- MD5 | 19 ++++++++----- NAMESPACE | 1 R/humann2meco.R | 22 ++++----------- R/mpa2meco.R |only R/ncyc2meco.R | 34 ++++++++++-------------- R/qiime1meco.R | 8 +---- R/utility.R | 46 +++++++++++++++++++++++++++++++++ inst/extdata/example_kraken2_merge.txt |only man/check_match_table.Rd |only man/check_sample_table.Rd |only man/mpa2meco.Rd |only man/ncyc2meco.Rd | 9 ++++-- 13 files changed, 91 insertions(+), 57 deletions(-)
Title: Bioequivalence Study Data Analysis
Description: Analyze bioequivalence study data with industrial strength. Sample size could be determined for various crossover designs, such as 2x2 design, 2x4 design, 4x4 design, Balaam design, Two-sequence dual design, and William design.
Reference: Chow SC, Liu JP. Design and Analysis of Bioavailability and Bioequivalence Studies. 3rd ed. (2009, ISBN:978-1-58488-668-6).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between BE versions 0.1.3 dated 2021-06-21 and 0.1.4 dated 2021-11-16
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/test2x2.R | 1 + inst/NEWS.Rd | 6 ++++++ inst/doc/BE-manual.pdf |binary man/be2x2.Rd | 2 +- man/test2x2.Rd | 8 ++++---- 7 files changed, 21 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-25 0.1.0