Title: 'RStudio' Addins to Prettify 'JavaScript', 'C++', 'Python', and
More
Description: Provides 'RStudio' addins to prettify 'HTML', 'CSS', 'SCSS', 'JavaScript', 'JSX', 'Markdown', 'C(++)', 'LaTeX', 'Python', 'Julia', 'XML', 'Java', 'JSON', 'Ruby', and to reindent 'C(++)', 'Fortran', 'Java', 'Julia', 'Python', 'SAS', 'Scala', 'Shell', 'SQL' and "TypeScript". Two kinds of addins are provided: 'Prettify' and 'Indent'. The 'Indent' addins only reindent the code, while the 'Prettify' addins also modify the code, e.g. trailing semi-colons are added to 'JavaScript' code when they are missing.
Author: Stéphane Laurent [aut, cre],
James Long and contributors [ctb, cph] ('Prettier' library),
Zeb Zhao [ctb, cph] ('indent.js' library),
Marijn Haverbeke [ctb, cph] ('CodeMirror' library),
George Leslie-Waksman and other contributors [ctb, cph]
('sql-formatter' library)
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between prettifyAddins versions 2.2.0 dated 2021-09-02 and 2.3.0 dated 2021-11-17
DESCRIPTION | 19 ++- LICENSE.note | 216 ++++++++++++++++++++++------------------ MD5 | 23 ++-- NEWS.md | 5 R/internal.R | 5 R/prettify_V8.R | 127 ++++++++++++++--------- README.md | 1 inst/rstudio/addins.dcf | 4 inst/shinyApp/server.R | 1 inst/shinyApp/ui.R | 7 + inst/shinyApp/www/prettify.js | 22 ++-- inst/shinyApp/www/sql-formatter |only 12 files changed, 260 insertions(+), 170 deletions(-)
More information about prettifyAddins at CRAN
Permanent link
Title: Bayesian Variable Selection with Shrinking and Diffusing Priors
Description: Provides a Bayesian variable selection approach using continuous spike and slab prior distributions. The prior choices here are motivated by the shrinking and diffusing priors studied in Narisetty & He (2014) <DOI:10.1214/14-AOS1207>.
Author: Qingyan Xiang <qyxiang@bu.edu>, Naveen Narisetty <naveen@illinois.edu>
Maintainer: Qingyan Xiang <qyxiang@bu.edu>
Diff between basad versions 0.2.0 dated 2017-11-20 and 0.3.0 dated 2021-11-17
DESCRIPTION | 12 - MD5 | 25 +- NAMESPACE | 7 R/basad.R | 476 ++++++++++++++++++++++++---------------------- R/coef.basad.R |only R/predict.basad.R | 61 ++--- R/print.basad.R | 70 +++--- R/summary.basad.R |only man/basad.Rd | 102 ++++----- man/predict.basad.Rd | 40 +-- man/print.basad.Rd | 6 man/summary.basad.Rd |only src/Gauss.cpp | 4 src/ScaleMixturePrior.cpp | 4 src/utiliti.cpp | 10 15 files changed, 420 insertions(+), 397 deletions(-)
Title: Calculate Concentration and Dispersion in Ordered Rating Scales
Description: Calculates concentration and dispersion in ordered rating scales. It implements various measures of concentration and dispersion to describe what researchers variably call agreement, concentration, consensus, dispersion, or polarization among respondents in ordered data. It also implements other related measures to classify distributions. In addition to a generic city-block based concentration measure and a generic dispersion measure, the package implements various measures, including van der Eijk's (2001) <DOI: 10.1023/A:1010374114305> measure of agreement A, measures of concentration by Leik, Tatsle and Wierman, Blair and Lacy, Kvalseth, Berry and Mielke, Reardon, and Garcia-Montalvo and Reynal-Querol. Furthermore, the package provides an implementation of Galtungs AJUS-system to classify distributions, as well as a function to identify the position of multiple modes.
Author: Didier Ruedin [aut, cre]
Clem Aeppli [ctb]
Maintainer: Didier Ruedin <didier.ruedin@unine.ch>
Diff between agrmt versions 1.42.7 dated 2021-07-17 and 1.42.8 dated 2021-11-17
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- NEWS | 5 +++++ R/Reardon.R | 3 ++- R/collapse.R | 14 +++++++------- R/dispersion.R | 2 +- build/vignette.rds |binary inst/doc/agrmt.pdf |binary man/collapse.Rd | 10 +++++----- 9 files changed, 34 insertions(+), 28 deletions(-)
Title: Rasterize Layers for 'ggplot2'
Description: Rasterize only specific layers of a 'ggplot2' plot while simultaneously keeping all labels and text in vector format. This allows users to keep plots within the reasonable size limit without loosing vector properties of the scale-sensitive information.
Author: Viktor Petukhov [aut, cph],
Teun van den Brand [aut],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between ggrastr versions 0.2.3 dated 2021-03-01 and 1.0.0 dated 2021-11-17
DESCRIPTION | 7 - MD5 | 10 +- R/rasterise.R | 2 README.md | 4 build/vignette.rds |binary inst/doc/Raster_geoms.html | 223 ++++++++++++++++++++++++++++++++++++++++++--- 6 files changed, 222 insertions(+), 24 deletions(-)
Title: Network-Based Gene Set Analysis
Description: Carry out network-based gene set analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data. Implements methods described in Shojaie A, Michailidis G (2010) <doi:10.1093/biomet/asq038>, Shojaie A, Michailidis G (2009) <doi:10.1089/cmb.2008.0081>, and Ma J, Shojaie A, Michailidis G (2016) <doi:10.1093/bioinformatics/btw410>.
Author: Michael Hellstern [aut, cre],
Ali Shojaie [aut],
Jing Ma [aut],
Kun Yue [aut]
Maintainer: Michael Hellstern <mikeh1@uw.edu>
Diff between netgsa versions 4.0.1 dated 2021-09-13 and 4.0.2 dated 2021-11-17
DESCRIPTION | 8 ++-- MD5 | 8 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/netgsa.html | 92 ++++++++++----------------------------------------- 5 files changed, 27 insertions(+), 81 deletions(-)
Title: Implementing BTYD Models with the Log Sum Exp Patch
Description: Functions for data preparation, parameter estimation, scoring, and plotting for the
BG/BB (Fader, Hardie, and Shang 2010 <doi:10.1287/mksc.1100.0580>),
BG/NBD (Fader, Hardie, and Lee 2005 <doi:10.1287/mksc.1040.0098>) and
Pareto/NBD and Gamma/Gamma (Fader, Hardie, and Lee 2005 <doi:10.1509/jmkr.2005.42.4.415>) models.
Author: Lukasz Dziurzynski [aut],
Edward Wadsworth [aut],
Peter Fader [ctb],
Elea McDonnell Feit [ctb],
Daniel McCarthy [aut, ctb],
Bruce Hardie [ctb],
Arun Gopalakrishnan [ctb],
Eric Schwartz [ctb],
Yao Zhang [ctb],
Gabi Huiber [ctb, cre]
Maintainer: Gabi Huiber <ghuiber@gmail.com>
Diff between BTYD versions 2.4.2 dated 2020-12-12 and 2.4.3 dated 2021-11-17
DESCRIPTION | 9 +++-- MD5 | 26 +++++++++-------- NEWS.md | 4 ++ R/BTYD.R | 2 - R/pnbd.R | 44 +++++++++++++++-------------- README.md | 6 +-- build/partial.rdb |only build/vignette.rds |binary inst/doc/BTYD-walkthrough.R | 24 +++++++-------- inst/doc/BTYD-walkthrough.Rnw | 36 +++++++++++++---------- inst/doc/BTYD-walkthrough.pdf |binary man/BTYD-package.Rd | 9 +++++ man/pnbd.EstimateParameters.Rd | 7 +--- vignettes/BTYD-walkthrough-concordance.tex |only vignettes/BTYD-walkthrough.Rnw | 36 +++++++++++++---------- 15 files changed, 112 insertions(+), 91 deletions(-)
Title: R's Interface to Maxima, Bringing Symbolic Computation into R
Description: Provides an interface to the powerful and fairly complete computer algebra system maxima.
It can be used to start and control 'Maxima' from within R by entering 'Maxima' commands.
It facilitates outputting results from 'Maxima' in 'LaTeX' and 'MathML'. 2D and 3D plots can be displayed directly. This package also registers a 'knitr'-engine
enabling 'Maxima' code chunks to be written in 'RMarkdown' documents.
Author: Kseniia Shumelchyk [aut],
Hans W. Borchers [aut],
Eric Stemmler [aut, cre]
Maintainer: Eric Stemmler <stemmler.eric@gmail.com>
Diff between rim versions 0.4.1 dated 2021-07-01 and 0.5.0 dated 2021-11-17
rim-0.4.1/rim/inst/extdata/test.md |only rim-0.4.1/rim/inst/include |only rim-0.4.1/rim/tests/testthat/test-setformat.R |only rim-0.5.0/rim/DESCRIPTION | 16 - rim-0.5.0/rim/MD5 | 62 +++--- rim-0.5.0/rim/NAMESPACE | 8 rim-0.5.0/rim/NEWS.md | 44 ++-- rim-0.5.0/rim/R/RcppExports.R | 22 +- rim-0.5.0/rim/R/engine.R | 80 +++++-- rim-0.5.0/rim/R/engine.utils.R | 253 ++++++++----------------- rim-0.5.0/rim/R/interface.R | 199 ++++++++++++------- rim-0.5.0/rim/R/options.R |only rim-0.5.0/rim/R/package.R | 93 ++++----- rim-0.5.0/rim/R/utils.R |only rim-0.5.0/rim/R/zzz.R | 3 rim-0.5.0/rim/README.md | 234 +++++++++++++++++++++-- rim-0.5.0/rim/inst/extdata/display.lisp |only rim-0.5.0/rim/inst/extdata/display.mac |only rim-0.5.0/rim/inst/extdata/draw-ref.png |only rim-0.5.0/rim/inst/extdata/draw2d-ref.png |only rim-0.5.0/rim/inst/extdata/draw3d-ref.png |only rim-0.5.0/rim/inst/extdata/maxima-init.mac | 7 rim-0.5.0/rim/inst/extdata/plot-knitr-pdf.lisp |only rim-0.5.0/rim/inst/extdata/plot-knitr-png.lisp |only rim-0.5.0/rim/inst/extdata/plot2d-ref.png |only rim-0.5.0/rim/inst/extdata/plot3d-ref.png |only rim-0.5.0/rim/inst/extdata/result.html |only rim-0.5.0/rim/inst/extdata/result.md | 171 ++++++++++++++-- rim-0.5.0/rim/inst/extdata/test.Rmd | 155 ++++++++++++++- rim-0.5.0/rim/inst/extdata/test.html |only rim-0.5.0/rim/man/maxima.engine.Rd | 22 +- rim-0.5.0/rim/man/maxima.options.Rd |only rim-0.5.0/rim/man/rim-package.Rd | 37 +-- rim-0.5.0/rim/src/Makevars | 2 rim-0.5.0/rim/src/RcppExports.cpp | 5 rim-0.5.0/rim/tests/testthat/test-apropos.R | 32 ++- rim-0.5.0/rim/tests/testthat/test-ask-user.R | 21 +- rim-0.5.0/rim/tests/testthat/test-engine.R | 25 +- rim-0.5.0/rim/tests/testthat/test-errors.R |only rim-0.5.0/rim/tests/testthat/test-execute.R | 32 +-- rim-0.5.0/rim/tests/testthat/test-warnings.R | 4 41 files changed, 1041 insertions(+), 486 deletions(-)
Title: Retrieve ESPN Fantasy Football Data
Description: Format the raw data from the ESPN fantasy football API
<https://fantasy.espn.com/apis/v3/games/ffl/> as data frames.
Retrieve data on public leagues, rosters, athletes, and matches.
Author: Kiernan Nicholls [aut, cre, cph]
Maintainer: Kiernan Nicholls <kiernann@protonmail.com>
Diff between fflr versions 2.0.0 dated 2021-11-08 and 2.0.1 dated 2021-11-17
DESCRIPTION | 6 +- MD5 | 10 +-- NEWS.md | 38 +------------ R/acquire.R | 12 ++-- inst/doc/fantasy-football.html | 115 ++++++++++++++++++++--------------------- tests/testthat/test-players.R | 5 + 6 files changed, 81 insertions(+), 105 deletions(-)
Title: Sparse Lightweight Arrays and Matrices
Description: Data structures and algorithms for sparse arrays and matrices,
based on index arrays and simple triplet representations, respectively.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
David Meyer [aut],
Christian Buchta [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between slam versions 0.1-48 dated 2020-12-03 and 0.1-49 dated 2021-11-17
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/array.R | 4 ++-- R/matrix.R | 8 ++++---- R/reduce.R | 2 +- R/rollup.R | 2 +- tests/stm_rollup.Rout.save | 16 ++++++++-------- 7 files changed, 25 insertions(+), 25 deletions(-)
Title: Export Domain Logic from Shiny using Meta-Programming
Description: Provides tools for capturing logic in a Shiny app and exposing it as code that can be run outside of Shiny (e.g., from an R console). It also provides tools for bundling both the code and results to the end user.
Author: Joe Cheng [aut],
Carson Sievert [cre, aut] (<https://orcid.org/0000-0002-4958-2844>),
RStudio [cph]
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between shinymeta versions 0.2.0.2 dated 2021-09-20 and 0.2.0.3 dated 2021-11-17
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 8 ++++++-- R/print.R | 1 + man/knit_print.shinyMetaExpr.Rd | 1 + man/metaObserve.Rd | 10 ++++++---- man/metaReactive.Rd | 10 ++++++---- man/metaRender.Rd | 10 ++++++---- tests/testthat/test-expandchain.R | 2 +- tests/testthat/test-report.R | 2 +- 10 files changed, 41 insertions(+), 29 deletions(-)
Title: Data Base Backend for 'mlr3'
Description: Extends the 'mlr3' package with a backend to
transparently work with databases. Includes two extra backends:
One relies on relies on the abstraction of package 'dbplyr' to interact with
one of the many supported database management systems (DBMS). The other one
is specialized for package 'duckdb'.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3db versions 0.4.1 dated 2021-04-13 and 0.4.2 dated 2021-11-17
DESCRIPTION | 16 +++++++-------- MD5 | 26 ++++++++++++------------- NAMESPACE | 3 +- NEWS.md | 4 +++ R/DataBackendDplyr.R | 8 +++---- R/DataBackendDuckDB.R | 30 ++++++++++++++--------------- R/helper.R | 20 ++++++++----------- R/zzz.R | 2 - man/mlr3db-package.Rd | 6 ----- tests/testthat/test_as_duckdb_backend.R | 2 - tests/testthat/test_duckdb.R | 18 +++++++++++++++-- tests/testthat/test_reconnect.R | 2 - tests/testthat/test_train_predict_dplyr.R | 6 +++++ tests/testthat/test_train_predict_duckdb.R | 8 +++++-- 14 files changed, 85 insertions(+), 66 deletions(-)
Title: A Toolkit for Using Whole Building Simulation Program
'EnergyPlus'
Description: A rich toolkit of using the whole building
simulation program 'EnergyPlus'(<https://energyplus.net>), which
enables programmatic navigation, modification of 'EnergyPlus' models
and makes it less painful to do parametric simulations and analysis.
Author: Hongyuan Jia [aut, cre] (<https://orcid.org/0000-0002-0075-8183>),
Adrian Chong [aut] (<https://orcid.org/0000-0002-9486-4728>)
Maintainer: Hongyuan Jia <hongyuanjia@cqust.edu.cn>
Diff between eplusr versions 0.14.2 dated 2021-05-28 and 0.15.0 dated 2021-11-17
eplusr-0.14.2/eplusr/man/eplusr-deprecated.Rd |only eplusr-0.15.0/eplusr/DESCRIPTION | 32 eplusr-0.15.0/eplusr/LICENSE | 2 eplusr-0.15.0/eplusr/MD5 | 143 eplusr-0.15.0/eplusr/NAMESPACE | 16 eplusr-0.15.0/eplusr/NEWS.md | 113 eplusr-0.15.0/eplusr/R/constants.R | 9 eplusr-0.15.0/eplusr/R/diagram.R | 6 eplusr-0.15.0/eplusr/R/epw.R | 73 eplusr-0.15.0/eplusr/R/geom.R | 2 eplusr-0.15.0/eplusr/R/group.R | 285 + eplusr-0.15.0/eplusr/R/idd.R | 33 eplusr-0.15.0/eplusr/R/idf.R | 128 eplusr-0.15.0/eplusr/R/impl-idf.R | 123 eplusr-0.15.0/eplusr/R/impl-sql.R | 95 eplusr-0.15.0/eplusr/R/impl-viewer.R | 118 eplusr-0.15.0/eplusr/R/install.R | 344 + eplusr-0.15.0/eplusr/R/job.R | 271 - eplusr-0.15.0/eplusr/R/options.R | 4 eplusr-0.15.0/eplusr/R/param.R | 447 + eplusr-0.15.0/eplusr/R/reload.R | 20 eplusr-0.15.0/eplusr/R/run.R | 2984 +++++++++---- eplusr-0.15.0/eplusr/R/sql.R | 2 eplusr-0.15.0/eplusr/R/sysdata.rda |binary eplusr-0.15.0/eplusr/R/transition.R | 361 + eplusr-0.15.0/eplusr/R/utils.R | 131 eplusr-0.15.0/eplusr/R/viewer.R | 33 eplusr-0.15.0/eplusr/README.md | 23 eplusr-0.15.0/eplusr/man/EplusGroupJob.Rd | 159 eplusr-0.15.0/eplusr/man/EplusJob.Rd | 174 eplusr-0.15.0/eplusr/man/EplusSql.Rd | 2 eplusr-0.15.0/eplusr/man/Idd.Rd | 42 eplusr-0.15.0/eplusr/man/Idf.Rd | 122 eplusr-0.15.0/eplusr/man/IdfGeometry.Rd | 2 eplusr-0.15.0/eplusr/man/IdfViewer.Rd | 4 eplusr-0.15.0/eplusr/man/ParametricJob.Rd | 310 + eplusr-0.15.0/eplusr/man/download_weather.Rd | 24 eplusr-0.15.0/eplusr/man/energyplus.Rd |only eplusr-0.15.0/eplusr/man/eplusr-package.Rd | 5 eplusr-0.15.0/eplusr/man/install_eplus.Rd | 32 eplusr-0.15.0/eplusr/man/parse_dots_value.Rd | 1 eplusr-0.15.0/eplusr/man/path_eplus.Rd |only eplusr-0.15.0/eplusr/man/run_model.Rd | 55 eplusr-0.15.0/eplusr/man/use_eplus.Rd | 8 eplusr-0.15.0/eplusr/man/with_speed.Rd |only eplusr-0.15.0/eplusr/tests/testthat.R | 10 eplusr-0.15.0/eplusr/tests/testthat/helper-cnd.R | 12 eplusr-0.15.0/eplusr/tests/testthat/helper-copy.R | 13 eplusr-0.15.0/eplusr/tests/testthat/helper-eplus.R |only eplusr-0.15.0/eplusr/tests/testthat/test-diagram.R | 8 eplusr-0.15.0/eplusr/tests/testthat/test-epw.R | 34 eplusr-0.15.0/eplusr/tests/testthat/test-format.R | 2 eplusr-0.15.0/eplusr/tests/testthat/test-geom.R | 1 eplusr-0.15.0/eplusr/tests/testthat/test-group.R | 39 eplusr-0.15.0/eplusr/tests/testthat/test-idd.R | 8 eplusr-0.15.0/eplusr/tests/testthat/test-idf.R | 29 eplusr-0.15.0/eplusr/tests/testthat/test-idfobj-sch.R | 12 eplusr-0.15.0/eplusr/tests/testthat/test-idfobj.R | 6 eplusr-0.15.0/eplusr/tests/testthat/test-impl-epw.R | 4 eplusr-0.15.0/eplusr/tests/testthat/test-impl-geom.R | 4 eplusr-0.15.0/eplusr/tests/testthat/test-impl-idf.R | 33 eplusr-0.15.0/eplusr/tests/testthat/test-impl-idfobj-sch.R | 8 eplusr-0.15.0/eplusr/tests/testthat/test-impl-idfobj.R | 2 eplusr-0.15.0/eplusr/tests/testthat/test-impl-viewer.R | 1 eplusr-0.15.0/eplusr/tests/testthat/test-install.R | 21 eplusr-0.15.0/eplusr/tests/testthat/test-job.R | 36 eplusr-0.15.0/eplusr/tests/testthat/test-param.R | 413 - eplusr-0.15.0/eplusr/tests/testthat/test-parse.R | 2 eplusr-0.15.0/eplusr/tests/testthat/test-rdd.R | 1 eplusr-0.15.0/eplusr/tests/testthat/test-reload.R | 5 eplusr-0.15.0/eplusr/tests/testthat/test-run.R | 769 +++ eplusr-0.15.0/eplusr/tests/testthat/test-sql.R | 20 eplusr-0.15.0/eplusr/tests/testthat/test-transition.R | 399 + eplusr-0.15.0/eplusr/tests/testthat/test-utils.R | 2 eplusr-0.15.0/eplusr/tests/testthat/test-viewer.R | 1 75 files changed, 6855 insertions(+), 1778 deletions(-)
Title: Washington State Legislative Explorer
Description: Gets data from the Washington State Legislature.
Author: Rohnin Randles [aut, cre]
Maintainer: Rohnin Randles <rrandles@princeton.edu>
Diff between washex versions 1.1.0 dated 2021-11-10 and 1.2.0 dated 2021-11-17
DESCRIPTION | 8 - MD5 | 12 +- NAMESPACE | 7 + R/getBillSponsors.R | 6 - R/sysdata.rda |binary R/washex.r |only README.md | 264 +++++++++++++++++++++++++------------------------- man/washex-package.Rd |only 8 files changed, 153 insertions(+), 144 deletions(-)
Title: Java Executable .jar Files for 'RKEEL'
Description: 'KEEL' is a popular Java software for a large number of different knowledge data discovery tasks. Furthermore, 'RKEEL' is a package with a R code layer between R and 'KEEL', for using 'KEEL' in R code. This package downloads and install the .jar files necessary for 'RKEEL' algorithms execution. For more information about 'KEEL', see <http://www.keel.es/>.
Author: Jose M. Moyano [aut, cre],
Luciano Sanchez Ramos [aut]
Maintainer: Jose M. Moyano <jmoyano@uco.es>
Diff between RKEELjars versions 1.0.19 dated 2018-12-19 and 1.0.20 dated 2021-11-17
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/zzz.R | 6 +++--- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Functional Data Analysis
Description: These functions were developed to support functional data
analysis as described in Ramsay, J. O. and Silverman, B. W.
(2005) Functional Data Analysis. New York: Springer and in
Ramsay, J. O., Hooker, Giles, and Graves, Spencer (2009).
Functional Data Analysis with R and Matlab (Springer).
The package includes data sets and script files working many examples
including all but one of the 76 figures in this latter book. Matlab versions
are available by ftp from
<https://www.psych.mcgill.ca/misc/fda/downloads/FDAfuns/>.
Author: J. O. Ramsay <ramsay@psych.mcgill.ca> [aut,cre],
Spencer Graves <spencer.graves@effectivedefense.org> [ctb],
Giles Hooker <gjh27@cornell.edu> [ctb]
Maintainer: J. O. Ramsay <ramsay@psych.mcgill.ca>
Diff between fda versions 5.5.0 dated 2021-10-29 and 5.5.1 dated 2021-11-17
DESCRIPTION | 8 MD5 | 28 +- R/fRegress.double.R | 14 + R/fRegress.formula.R | 2 R/fdParcheck.R | 18 + R/landmarkreg.R | 8 R/register.fd.R | 8 R/smooth.basis1.R | 4 R/smooth.basisPar.R | 1 R/smooth.bibasis.R | 6 R/smooth.monotone.R | 4 R/smooth.morph2.R | 494 +++++++++++++++++++++++++-------------------------- R/smooth.pos.R | 4 R/smooth.surp.R | 36 --- man/fdParcheck.Rd | 22 +- 15 files changed, 326 insertions(+), 331 deletions(-)
Title: Starter Kit for New Projects
Description: Get started with new projects by dropping a skeleton of a new
project into a new or existing directory, initialise git repositories,
and create reproducible environments with the 'renv' package. The
package allows for dynamically named files, folders, file content, as
well as the functionality to drop individual template files into
existing projects.
Author: Daniel D. Sjoberg [aut, cre] (<https://orcid.org/0000-0003-0862-2018>)
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between starter versions 0.1.6 dated 2021-09-27 and 0.1.7 dated 2021-11-17
DESCRIPTION | 8 MD5 | 28 - NEWS.md | 82 +-- R/create_project.R | 725 +++++++++++++++--------------- README.md | 12 build/vignette.rds |binary inst/WORDLIST | 5 inst/doc/create_project.R | 72 +- inst/doc/create_project.Rmd | 112 ++-- inst/doc/create_project.html | 130 ++--- inst/project_templates/default_rprofile.R | 3 man/create_project.Rd | 5 man/starter-package.Rd | 9 tests/testthat/test-create_project.R | 171 +++---- vignettes/create_project.Rmd | 112 ++-- 15 files changed, 786 insertions(+), 688 deletions(-)
Title: Tools for Reading, Writing, Viewing and Manipulating CIFTI Files
Description: CIFTI files contain brain imaging data in "grayordinates," which
represent the gray matter as cortical surface vertices (left and right) and
subcortical voxels (cerebellum, basal ganglia, and other deep gray matter).
'ciftiTools' provides a unified environment for reading, writing,
visualizing and manipulating CIFTI-format data. It supports the "dscalar,"
"dlabel," and "dtseries" intents. Grayordinate data is read in as a "xifti"
object, which is structured for convenient access to the data and metadata,
and includes support for surface geometry files to enable
spatially-dependent functionality such as static or interactive
visualizations and smoothing.
Author: Amanda Mejia [aut, cre],
Damon Pham [aut] (<https://orcid.org/0000-0001-7563-4727>),
John Muschelli [ctb] (<https://orcid.org/0000-0001-6469-1750>)
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>
Diff between ciftiTools versions 0.6.1 dated 2021-09-16 and 0.7.0 dated 2021-11-17
ciftiTools-0.6.1/ciftiTools/man/view_xifti_surface.cbar.Rd |only ciftiTools-0.6.1/ciftiTools/man/write_cifti_components.Rd |only ciftiTools-0.7.0/ciftiTools/DESCRIPTION | 12 ciftiTools-0.7.0/ciftiTools/MD5 | 91 - ciftiTools-0.7.0/ciftiTools/NAMESPACE | 8 ciftiTools-0.7.0/ciftiTools/NEWS.md | 13 ciftiTools-0.7.0/ciftiTools/R/ciftiTools-package.R | 1 ciftiTools-0.7.0/ciftiTools/R/convert_xifti.R | 2 ciftiTools-0.7.0/ciftiTools/R/edit_mask.R |only ciftiTools-0.7.0/ciftiTools/R/info_cifti.R | 60 - ciftiTools-0.7.0/ciftiTools/R/is.xifti.R | 9 ciftiTools-0.7.0/ciftiTools/R/make_xifti_components.R | 10 ciftiTools-0.7.0/ciftiTools/R/read_cifti_separate.R | 2 ciftiTools-0.7.0/ciftiTools/R/resample_cifti.R | 6 ciftiTools-0.7.0/ciftiTools/R/rox_args_docs.R | 7 ciftiTools-0.7.0/ciftiTools/R/separate_cifti.R | 201 ++- ciftiTools-0.7.0/ciftiTools/R/smooth_cifti.R | 7 ciftiTools-0.7.0/ciftiTools/R/template_xifti.R | 3 ciftiTools-0.7.0/ciftiTools/R/transform_xifti.R | 67 + ciftiTools-0.7.0/ciftiTools/R/utils.R | 2 ciftiTools-0.7.0/ciftiTools/R/utils_volume.R | 17 ciftiTools-0.7.0/ciftiTools/R/view_comp.R |only ciftiTools-0.7.0/ciftiTools/R/view_xifti.R | 81 + ciftiTools-0.7.0/ciftiTools/R/view_xifti_surface.R | 445 +++++-- ciftiTools-0.7.0/ciftiTools/R/view_xifti_volume.R | 560 +++++++--- ciftiTools-0.7.0/ciftiTools/R/wb_cmd.R | 13 ciftiTools-0.7.0/ciftiTools/R/wrappers.R | 5 ciftiTools-0.7.0/ciftiTools/R/write_cifti.R | 170 --- ciftiTools-0.7.0/ciftiTools/R/write_cifti_from_separate.R | 9 ciftiTools-0.7.0/ciftiTools/R/write_nifti.R | 3 ciftiTools-0.7.0/ciftiTools/R/write_xifti2.R |only ciftiTools-0.7.0/ciftiTools/README.md | 3 ciftiTools-0.7.0/ciftiTools/inst/extdata/README | 1 ciftiTools-0.7.0/ciftiTools/man/ciftiTools.Rd | 1 ciftiTools-0.7.0/ciftiTools/man/crop_image.Rd |only ciftiTools-0.7.0/ciftiTools/man/edit_mask_surf.Rd |only ciftiTools-0.7.0/ciftiTools/man/separate_cifti.Rd | 29 ciftiTools-0.7.0/ciftiTools/man/separate_cifti_files.Rd |only ciftiTools-0.7.0/ciftiTools/man/smooth_cifti.Rd | 7 ciftiTools-0.7.0/ciftiTools/man/surface_plot_Params.Rd | 9 ciftiTools-0.7.0/ciftiTools/man/transform_xifti.Rd | 20 ciftiTools-0.7.0/ciftiTools/man/view_comp.Rd |only ciftiTools-0.7.0/ciftiTools/man/view_surf.Rd | 18 ciftiTools-0.7.0/ciftiTools/man/view_xifti.cbar.Rd |only ciftiTools-0.7.0/ciftiTools/man/view_xifti_surface.Rd | 64 + ciftiTools-0.7.0/ciftiTools/man/view_xifti_volume.Rd | 51 ciftiTools-0.7.0/ciftiTools/man/vox_locations.Rd |only ciftiTools-0.7.0/ciftiTools/man/write_subcort_nifti.Rd | 3 ciftiTools-0.7.0/ciftiTools/man/write_xifti2.Rd |only ciftiTools-0.7.0/ciftiTools/tests/testthat/test-plotting_sub.R | 6 ciftiTools-0.7.0/ciftiTools/tests/testthat/test-plotting_together.R |only ciftiTools-0.7.0/ciftiTools/tests/testthat/test-resampling.R | 5 ciftiTools-0.7.0/ciftiTools/tests/testthat/test-writing.R | 3 53 files changed, 1354 insertions(+), 670 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from 'RevMan 5';
- prediction interval, Hartung-Knapp method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression;
- generalised linear mixed models;
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut] (<https://orcid.org/0000-0001-6214-9087>)
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between meta versions 5.0-1 dated 2021-10-20 and 5.1-0 dated 2021-11-17
DESCRIPTION | 8 - MD5 | 46 +++---- NEWS.md | 27 +++- R/hetcalc.R | 179 +++++++++++++++++++----------- R/labbe.R | 4 R/meta-aux.R | 7 + R/meta-internal.R | 4 R/meta-math.R | 10 + R/meta-set.R | 19 +++ R/metabias.R | 23 --- R/metabin.R | 127 +++++++++++---------- R/metacont.R | 15 +- R/metacor.R | 8 - R/metacr.R | 4 R/metagen.R | 23 ++- R/metainc.R | 106 ++++++++++-------- R/metamean.R | 10 - R/metaprop.R | 80 +++++++------ R/metarate.R | 82 +++++++------ R/metareg.R | 144 +++++++++++++----------- R/settings.meta.R | 32 ++--- R/subgroup.R | 318 ++++++++++++++++++++++++++++++++---------------------- R/update.meta.R | 16 +- man/metabin.Rd | 23 +-- 24 files changed, 760 insertions(+), 555 deletions(-)
Title: Estimation and Tests of Hierarchical F-Statistics
Description: Estimates hierarchical F-statistics from haploid or
diploid genetic data with any numbers of levels in the hierarchy, following the
algorithm of Yang (Evolution(1998), 52:950).
Tests via randomisations the significance
of each F and variance components, using the likelihood-ratio statistics G
(Goudet et al. (1996) <https://www.genetics.org/content/144/4/1933>).
Estimates genetic diversity statistics
for haploid and diploid genetic datasets in various formats, including inbreeding and
coancestry coefficients, and population specific F-statistics following
Weir and Goudet (2017) <https://www.genetics.org/content/206/4/2085>.
Author: Jerome Goudet [aut, cre],
Thibaut Jombart [aut],
Zhian N. Kamvar [ctb],
Eric Archer [ctb],
Olivier Hardy [ctb]
Maintainer: Jerome Goudet <jerome.goudet@unil.ch>
Diff between hierfstat versions 0.5-7 dated 2020-07-20 and 0.5-10 dated 2021-11-17
hierfstat-0.5-10/hierfstat/CHANGES | 23 + hierfstat-0.5-10/hierfstat/DESCRIPTION | 10 hierfstat-0.5-10/hierfstat/MD5 | 105 ++-- hierfstat-0.5-10/hierfstat/NAMESPACE | 10 hierfstat-0.5-10/hierfstat/R/beta_dosage.R | 102 +++- hierfstat-0.5-10/hierfstat/R/betas.R | 87 ++-- hierfstat-0.5-10/hierfstat/R/div_dosage.R |only hierfstat-0.5-10/hierfstat/R/fsdosage.R | 103 ++-- hierfstat-0.5-10/hierfstat/R/fstat2dos.R | 65 +-- hierfstat-0.5-10/hierfstat/R/genetdist.R | 3 hierfstat-0.5-10/hierfstat/R/misc.R | 56 ++ hierfstat-0.5-10/hierfstat/R/pairwise.fst.R | 59 ++ hierfstat-0.5-10/hierfstat/R/ppboot.R | 46 ++ hierfstat-0.5-10/hierfstat/R/readmsb.R | 2 hierfstat-0.5-10/hierfstat/R/sexbiaseddisp.R | 11 hierfstat-0.5-10/hierfstat/R/simgenot_new.R | 2 hierfstat-0.5-10/hierfstat/R/writebayescan.R | 2 hierfstat-0.5-10/hierfstat/R/writefstat.R | 4 hierfstat-0.5-10/hierfstat/R/writeped.R | 13 hierfstat-0.5-10/hierfstat/build/vignette.rds |binary hierfstat-0.5-10/hierfstat/inst/doc/hierfstat.R | 26 - hierfstat-0.5-10/hierfstat/inst/doc/hierfstat.Rmd | 4 hierfstat-0.5-10/hierfstat/inst/doc/hierfstat.html | 325 +++------------ hierfstat-0.5-10/hierfstat/inst/doc/import.R | 45 +- hierfstat-0.5-10/hierfstat/inst/doc/import.Rmd | 50 +- hierfstat-0.5-10/hierfstat/inst/doc/import.html | 380 +++++------------- hierfstat-0.5-10/hierfstat/man/AIc.Rd | 6 hierfstat-0.5-10/hierfstat/man/TajimaD.dosage.Rd |only hierfstat-0.5-10/hierfstat/man/basic.stats.Rd |only hierfstat-0.5-10/hierfstat/man/beta.dosage.Rd | 36 + hierfstat-0.5-10/hierfstat/man/betas.Rd | 43 +- hierfstat-0.5-10/hierfstat/man/boot.ppbetas.Rd |only hierfstat-0.5-10/hierfstat/man/cont.isl.Rd | 6 hierfstat-0.5-10/hierfstat/man/cont.isl99.Rd | 6 hierfstat-0.5-10/hierfstat/man/crocrussula.Rd | 4 hierfstat-0.5-10/hierfstat/man/diploid.Rd | 6 hierfstat-0.5-10/hierfstat/man/fs.dosage.Rd | 16 hierfstat-0.5-10/hierfstat/man/g.stats.glob.Rd | 2 hierfstat-0.5-10/hierfstat/man/genet.dist.Rd | 7 hierfstat-0.5-10/hierfstat/man/hierfstat.Rd | 6 hierfstat-0.5-10/hierfstat/man/matching.Rd |only hierfstat-0.5-10/hierfstat/man/pairwise.WCfst.Rd | 5 hierfstat-0.5-10/hierfstat/man/pairwise.betas.Rd |only hierfstat-0.5-10/hierfstat/man/pairwise.neifst.Rd | 5 hierfstat-0.5-10/hierfstat/man/pi.dosage.Rd |only hierfstat-0.5-10/hierfstat/man/pop.freq.Rd | 4 hierfstat-0.5-10/hierfstat/man/ppfst.rd | 2 hierfstat-0.5-10/hierfstat/man/read.ms.Rd | 2 hierfstat-0.5-10/hierfstat/man/sexbias.test.Rd | 4 hierfstat-0.5-10/hierfstat/man/sim.genot.metapop.t.Rd | 2 hierfstat-0.5-10/hierfstat/man/sim.genot.t.Rd | 10 hierfstat-0.5-10/hierfstat/man/theta.Watt.dosage.Rd |only hierfstat-0.5-10/hierfstat/man/write.bayescan.Rd | 2 hierfstat-0.5-10/hierfstat/man/write.ped.Rd | 5 hierfstat-0.5-10/hierfstat/man/write.struct.rd | 8 hierfstat-0.5-10/hierfstat/vignettes/hierfstat.Rmd | 4 hierfstat-0.5-10/hierfstat/vignettes/import.Rmd | 50 +- hierfstat-0.5-7/hierfstat/man/basic.stats.rd |only 58 files changed, 935 insertions(+), 839 deletions(-)
Title: Plotting and Comparing Means with Violin Plots
Description: Produces violin plots with optional nonparametric (Mann-Whitney test) and parametric (Tukey's honest significant difference) mean comparison and linear regression. This package aims to be a simple and quick visualization tool for comparing means and assessing trends of categorical factors.
Author: Jefferson Paril <jeffersonparil@gmail.com>
Maintainer: Jefferson Paril <jeffersonparil@gmail.com>
Diff between violinplotter versions 2.0.1 dated 2021-04-15 and 3.0.0 dated 2021-11-17
DESCRIPTION | 8 +- MD5 | 20 +++--- NAMESPACE | 1 NEWS.md | 5 - R/mean_comparison_HSD.R | 19 +----- R/mean_comparison_MannWhitney.R |only R/show_means_sample_sizes.R |only R/violinplotter.R | 124 ++++++++++++++++++++++++++++------------ README.md | 21 ++++-- man/violinplotter.Rd | 36 ++++++++--- tests/test1.R | 7 +- tests/test2.R | 2 12 files changed, 158 insertions(+), 85 deletions(-)
Title: Easily Carry Out Latent Profile Analysis (LPA) Using Open-Source
or Commercial Software
Description: An interface to the 'mclust' package to easily
carry out latent profile analysis ("LPA"). Provides functionality to
estimate commonly-specified models. Follows a tidy approach, in that
output is in the form of a data frame that can subsequently be
computed on. Also has functions to interface to the commercial 'MPlus'
software via the 'MplusAutomation' package.
Author: Joshua M Rosenberg [aut, cre],
Caspar van Lissa [aut],
Jennifer A Schmidt [ctb],
Patrick N Beymer [ctb],
Daniel Anderson [ctb],
Matthew J. Schell [ctb]
Maintainer: Joshua M Rosenberg <jmrosenberg@utk.edu>
Diff between tidyLPA versions 1.0.8 dated 2020-08-17 and 1.1.0 dated 2021-11-17
DESCRIPTION | 8 MD5 | 49 NAMESPACE | 1 NEWS.md | 11 R/data-mac.R | 2 R/empathy.R | 3 R/estimate-profiles-mplus.R | 6 R/id_edu.R | 3 R/plot-mixture_densities.R | 81 + README.md | 29 build/partial.rdb |only build/vignette.rds |binary inst/doc/Introduction_to_tidyLPA.Rmd | 14 inst/doc/Introduction_to_tidyLPA.html | 567 +++------- inst/doc/benchmarking-mclust-and-mplus.Rmd | 3 inst/doc/benchmarking-mclust-and-mplus.html | 292 +---- man/curry_mac.Rd | 2 man/empathy.Rd | 3 man/id_edu.Rd | 3 tests/testthat/test-compare-fit-stats.R | 183 +-- tests/testthat/test-compare-solutions.R | 4 tests/testthat/test-local-estimate-profiles-mplus.R | 25 tests/testthat/test-local-estimate_profiles_mplus2-arguments.R | 13 tests/testthat/test-local-plot-profiles-mplus.R | 22 vignettes/Introduction_to_tidyLPA.Rmd | 14 vignettes/benchmarking-mclust-and-mplus.Rmd | 3 26 files changed, 548 insertions(+), 793 deletions(-)
Title: Generating Synthetic Versions of Sensitive Microdata for
Statistical Disclosure Control
Description: A tool for producing synthetic versions of microdata containing confidential information so that they are safe to be released to users for exploratory analysis. The key objective of generating synthetic data is to replace sensitive original values with synthetic ones causing minimal distortion of the statistical information contained in the data set. Variables, which can be categorical or continuous, are synthesised one-by-one using sequential modelling. Replacements are generated by drawing from conditional distributions fitted to the original data using parametric or classification and regression trees models. Data are synthesised via the function syn() which can be largely automated, if default settings are used, or with methods defined by the user. Optional parameters can be used to influence the disclosure risk and the analytical quality of the synthesised data. For a description of the implemented method see Nowok, Raab and Dibben (2016) <doi:10.18637/jss.v074.i11>.
Author: Beata Nowok [aut, cre],
Gillian M Raab [aut],
Chris Dibben [ctb],
Joshua Snoke [ctb],
Caspar van Lissa [ctb]
Maintainer: Beata Nowok <beata.nowok@gmail.com>
Diff between synthpop versions 1.6-0 dated 2020-09-04 and 1.7-0 dated 2021-11-17
DESCRIPTION | 10 MD5 | 72 ++- NAMESPACE | 56 ++- NEWS | 77 ++++ R/codebook.syn.r | 14 R/compare.syn.r | 130 +++++- R/functions.syn.r | 50 +- R/methods.syn.r | 256 +++++++------ R/multi.compare.syn.r | 23 - R/numtocat.syn.r | 21 - R/padMis.syn.r | 12 R/sampler.syn.r | 10 R/syn.r | 304 +++++++++++----- R/syn.strata.r | 22 - R/utility.syn.r | 893 +++++++++++++++++++++++++++++++----------------- R/utility.tables.r |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/inference.R | 34 - inst/doc/inference.Rnw | 1 inst/doc/inference.pdf |binary inst/doc/synthpop.pdf |binary inst/doc/utility.R |only inst/doc/utility.Rnw |only inst/doc/utility.pdf |only man/compare.synds.Rd | 108 ++++- man/multi.compare.Rd | 3 man/numtocat.syn.Rd | 16 man/syn.Rd | 49 +- man/syn.passive.Rd | 58 ++- man/syn.survctree.Rd | 58 ++- man/synthpop-package.Rd | 4 man/utility.gen.Rd | 207 +++++++---- man/utility.tab.Rd | 253 +++++++++---- man/utility.tables.Rd |only vignettes/Fig1.png |only vignettes/Fig2.png |only vignettes/Fig3.png |only vignettes/Fig4.png |only vignettes/Fig5.png |only vignettes/inference.Rnw | 1 vignettes/utility.Rnw |only vignettes/utility.bib |only 43 files changed, 1880 insertions(+), 862 deletions(-)
Title: Shiny Apps for Automated Data Analysis and Automated
Interpretation
Description: Shiny apps for automated data analysis, annotated outputs and human-readable interpretation in natural language. Designed especially for learners and applied researchers. Currently available methods: EDA, EDA with Python, Correlation Analysis, Principal Components Analysis, Confirmatory Factor Analysis.
Author: Denise Welsch [aut, cre] (<https://orcid.org/0000-0001-8904-1631>),
Berit Hunsdieck [ctb],
Omar Alhelal [ctb]
Maintainer: Denise Welsch <denise.welsch@reyar.de>
Diff between Statsomat versions 1.0 dated 2021-09-16 and 1.1.0 dated 2021-11-17
Statsomat-1.0/Statsomat/inst/shiny-apps/CFA/rsconnect |only Statsomat-1.0/Statsomat/inst/shiny-apps/EDAPY/rsconnect |only Statsomat-1.0/Statsomat/inst/shiny-apps/PCA/rsconnect |only Statsomat-1.1.0/Statsomat/DESCRIPTION | 6 +++--- Statsomat-1.1.0/Statsomat/MD5 | 9 +++------ Statsomat-1.1.0/Statsomat/inst/shiny-apps/CFA/report_kernel.Rmd | 10 ++++++---- Statsomat-1.1.0/Statsomat/inst/shiny-apps/CFA/ui.R | 2 +- 7 files changed, 13 insertions(+), 14 deletions(-)
Title: 'Prevision.io' R SDK
Description: For working with the 'Prevision.io' AI model management platform's API <https://prevision.io/>.
Author: Florian Laroumagne [aut, cre],
Prevision.io Inc [cph]
Maintainer: Florian Laroumagne <florian.laroumagne@prevision.io>
Diff between previsionio versions 11.3.1 dated 2021-10-25 and 11.3.3 dated 2021-11-17
previsionio-11.3.1/previsionio/man/create_deployment_app.Rd |only previsionio-11.3.1/previsionio/man/create_pipeline.Rd |only previsionio-11.3.3/previsionio/DESCRIPTION | 9 - previsionio-11.3.3/previsionio/MD5 | 40 ++---- previsionio-11.3.3/previsionio/NAMESPACE | 2 previsionio-11.3.3/previsionio/NEWS.md | 18 ++ previsionio-11.3.3/previsionio/R/dataset.R | 29 +--- previsionio-11.3.3/previsionio/R/deployment.R | 50 ------- previsionio-11.3.3/previsionio/R/experiment.R | 2 previsionio-11.3.3/previsionio/R/helper.R | 2 previsionio-11.3.3/previsionio/R/pipeline.R | 51 ------- previsionio-11.3.3/previsionio/R/zzz.R | 2 previsionio-11.3.3/previsionio/man/create_dataframe_from_dataset.Rd | 6 previsionio-11.3.3/previsionio/man/create_deployment_model.Rd | 4 previsionio-11.3.3/previsionio/man/create_pipeline_trigger.Rd | 4 previsionio-11.3.3/previsionio/man/delete_deployment.Rd | 4 previsionio-11.3.3/previsionio/tests/testthat.R | 36 ++--- previsionio-11.3.3/previsionio/tests/testthat/test-deployment-delete.R | 3 previsionio-11.3.3/previsionio/tests/testthat/test-deployment.R | 32 ---- previsionio-11.3.3/previsionio/tests/testthat/test-experiment.R | 2 previsionio-11.3.3/previsionio/tests/testthat/test-pipeline-delete.R | 10 - previsionio-11.3.3/previsionio/tests/testthat/test-pipeline.R | 66 +++------- 22 files changed, 108 insertions(+), 264 deletions(-)
Title: Sample Size Analysis for Psychological Networks and More
Description: An implementation of the sample size computation method for network
models proposed by Constantin et al. (2021) <doi:10.31234/osf.io/j5v7u>.
The implementation takes the form of a three-step recursive algorithm
designed to find an optimal sample size given a model specification and a
performance measure of interest. It starts with a Monte Carlo simulation
step for computing the performance measure and a statistic at various sample
sizes selected from an initial sample size range. It continues with a
monotone curve-fitting step for interpolating the statistic across the entire
sample size range. The final step employs stratified bootstrapping to quantify
the uncertainty around the fitted curve.
Author: Mihai Constantin [aut, cre] (<https://orcid.org/0000-0002-6460-0107>)
Maintainer: Mihai Constantin <mihai@mihaiconstantin.com>
Diff between powerly versions 1.7.1 dated 2021-11-08 and 1.7.2 dated 2021-11-17
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 24 ++++++++++++++++++++++++ R/GgmModel.R | 5 +++++ README.md | 8 +++++--- build/partial.rdb |binary tests/testthat/test-ggm.R | 14 ++++++++++---- tests/testthat/test-range.R | 13 ++++++++----- tests/testthat/test-step-two.R | 2 +- 9 files changed, 64 insertions(+), 24 deletions(-)
Title: Implementation of the Unsupervised Smooth Contour Line Detection
for Images
Description: An implementation of the Unsupervised Smooth Contour Detection algorithm for digital images as described in the paper: "Unsupervised Smooth Contour Detection" by Rafael Grompone von Gioi, and Gregory Randall (2016).
The algorithm is explained at <doi:10.5201/ipol.2016.175>.
Author: Jan Wijffels [aut, cre, cph] (R wrapper),
BNOSAC [cph] (R wrapper),
Rafael Grompone von Gioi [ctb, cph] (src/smooth_contours),
Gregory Randall [ctb, cph] (src/smooth_contours),
Niccolò Marchi [ctb]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between image.ContourDetector versions 0.1.0 dated 2020-07-27 and 0.1.1 dated 2021-11-17
DESCRIPTION | 17 ++++-- MD5 | 19 ++++--- NAMESPACE | 2 NEWS.md |only R/contour_detector.R | 86 +++++++++++++++++++++++++++++++---- R/pkg.R | 2 build |only inst/extdata/landscape.tif |only man/image.ContourDetector-package.Rd | 2 man/image_contour_detector.Rd | 51 ++++++++++++++++++-- man/plot.cld.Rd | 10 +++- src/RcppExports.cpp | 5 ++ 12 files changed, 162 insertions(+), 32 deletions(-)
More information about image.ContourDetector at CRAN
Permanent link
Title: For Writing Graduate Institute Geneva Documents
Description: A set of tools to support writing various documents
according to the Graduate Institute of International and Development Studies
conventions and regulations.
The most common use will be for writing and compiling theses or thesis
chapters, as drafts or for examination with all the correct preamble
content. However, the package also offers the creation of html presentation
slides via 'xaringan', the capacity to write problem sets and, for course
instructors, the ability to create syllabi.
The package includes additional functions for institutional color palettes
and an institutional 'ggplot' theme, as well as a function for word counts
and a bibliographical analysis toolkit.
Author: James Hollway [aut, cre, cph] (<https://orcid.org/0000-0002-8361-9647>),
Bernhard Bieri [ctb] (<https://orcid.org/0000-0001-5943-9059>)
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between iheiddown versions 0.8.2 dated 2021-06-24 and 0.8.6 dated 2021-11-17
iheiddown-0.8.2/iheiddown/man/count_words.Rd |only iheiddown-0.8.2/iheiddown/vignettes/images/presentations/0_Open_Project.PNG |only iheiddown-0.8.2/iheiddown/vignettes/images/presentations/1_Select_Template.PNG |only iheiddown-0.8.6/iheiddown/DESCRIPTION | 28 - iheiddown-0.8.6/iheiddown/MD5 | 115 ++--- iheiddown-0.8.6/iheiddown/NAMESPACE | 20 iheiddown-0.8.6/iheiddown/NEWS.md | 56 ++ iheiddown-0.8.6/iheiddown/R/bibfix.R |only iheiddown-0.8.6/iheiddown/R/bibstats.R |only iheiddown-0.8.6/iheiddown/R/bookdown_profile.R | 3 iheiddown-0.8.6/iheiddown/R/count_words.R | 33 + iheiddown-0.8.6/iheiddown/R/dates.R | 7 iheiddown-0.8.6/iheiddown/R/palettes.R | 20 iheiddown-0.8.6/iheiddown/R/preview.R | 16 iheiddown-0.8.6/iheiddown/R/problemset_pdf.R |only iheiddown-0.8.6/iheiddown/R/syllabus_pdf.R | 23 - iheiddown-0.8.6/iheiddown/R/theme.R | 203 +++++--- iheiddown-0.8.6/iheiddown/R/thesis_pdf.R | 95 ++-- iheiddown-0.8.6/iheiddown/R/zzz.R | 3 iheiddown-0.8.6/iheiddown/README.md | 229 ++++++---- iheiddown-0.8.6/iheiddown/build/vignette.rds |binary iheiddown-0.8.6/iheiddown/inst/doc/presentations.R | 10 iheiddown-0.8.6/iheiddown/inst/doc/presentations.Rmd | 60 ++ iheiddown-0.8.6/iheiddown/inst/doc/presentations.html | 108 ++++ iheiddown-0.8.6/iheiddown/inst/doc/problemset.R |only iheiddown-0.8.6/iheiddown/inst/doc/problemset.Rmd |only iheiddown-0.8.6/iheiddown/inst/doc/problemset.html |only iheiddown-0.8.6/iheiddown/inst/doc/syllabus.R | 6 iheiddown-0.8.6/iheiddown/inst/doc/syllabus.Rmd | 34 - iheiddown-0.8.6/iheiddown/inst/doc/syllabus.html | 33 - iheiddown-0.8.6/iheiddown/inst/doc/thesis.R | 6 iheiddown-0.8.6/iheiddown/inst/doc/thesis.Rmd | 21 iheiddown-0.8.6/iheiddown/inst/doc/thesis.html | 29 - iheiddown-0.8.6/iheiddown/inst/logos/logo_EE_rvb_2.png |only iheiddown-0.8.6/iheiddown/inst/rmarkdown/templates/presentation/skeleton/assets/iheid-xaringan-style.css | 3 iheiddown-0.8.6/iheiddown/inst/rmarkdown/templates/presentation/skeleton/assets/myBib.bib | 12 iheiddown-0.8.6/iheiddown/inst/rmarkdown/templates/presentation/skeleton/skeleton.Rmd | 8 iheiddown-0.8.6/iheiddown/inst/rmarkdown/templates/problemset |only iheiddown-0.8.6/iheiddown/inst/rmarkdown/templates/problemset_pdf |only iheiddown-0.8.6/iheiddown/inst/rmarkdown/templates/syllabus/skeleton/references.bib | 37 - iheiddown-0.8.6/iheiddown/inst/rmarkdown/templates/syllabus/skeleton/skeleton.Rmd | 3 iheiddown-0.8.6/iheiddown/inst/rmarkdown/templates/syllabus_pdf/resources/template.tex | 25 - iheiddown-0.8.6/iheiddown/inst/rmarkdown/templates/thesis/skeleton/bib/references.bib | 60 +- iheiddown-0.8.6/iheiddown/inst/rmarkdown/templates/thesis/skeleton/skeleton.Rmd | 2 iheiddown-0.8.6/iheiddown/inst/rmarkdown/templates/thesis_pdf/resources/template.tex | 2 iheiddown-0.8.6/iheiddown/man/bibstats.Rd |only iheiddown-0.8.6/iheiddown/man/chapter_pdf.Rd | 8 iheiddown-0.8.6/iheiddown/man/countwords.Rd |only iheiddown-0.8.6/iheiddown/man/iheid_palette.Rd | 8 iheiddown-0.8.6/iheiddown/man/preview.Rd | 4 iheiddown-0.8.6/iheiddown/man/problemset_pdf.Rd |only iheiddown-0.8.6/iheiddown/man/syllabus_pdf.Rd | 6 iheiddown-0.8.6/iheiddown/man/theme_iheid.Rd | 7 iheiddown-0.8.6/iheiddown/man/thesis_pdf.Rd | 3 iheiddown-0.8.6/iheiddown/tests/testthat/test-bibstats.R |only iheiddown-0.8.6/iheiddown/tests/testthat/test-countwords.R | 2 iheiddown-0.8.6/iheiddown/tests/testthat/test-dates.R | 4 iheiddown-0.8.6/iheiddown/tests/testthat/test-preview.R | 6 iheiddown-0.8.6/iheiddown/tests/testthat/test-theme.R | 36 + iheiddown-0.8.6/iheiddown/vignettes/images/presentations/0-Open_Project.PNG |only iheiddown-0.8.6/iheiddown/vignettes/images/presentations/1-Select_Template.PNG |only iheiddown-0.8.6/iheiddown/vignettes/images/problemset |only iheiddown-0.8.6/iheiddown/vignettes/presentations.Rmd | 60 ++ iheiddown-0.8.6/iheiddown/vignettes/problemset.Rmd |only iheiddown-0.8.6/iheiddown/vignettes/syllabus.Rmd | 34 - iheiddown-0.8.6/iheiddown/vignettes/thesis.Rmd | 21 66 files changed, 997 insertions(+), 512 deletions(-)
Title: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Description: Contains tools for exploring Hardy-Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) <doi:10.1126/science.28.706.49> for bi and multi-allelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) with bi-allelic variants are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included (Graffelman & Weir, 2016) <doi: 10.1038/hdy.2016.20>, including Bayesian procedures. Some exact and permutation procedures also work with multi-allelic variants. Special test procedures that jointly address Hardy-Weinberg equilibrium and equality of allele frequencies in both sexes are supplied, for the bi and multi-allelic case. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of bi-allelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots. The functionality of the package is explained in detail in a related JSS paper <doi:10.18637/jss.v064.i03>.
Author: Jan Graffelman [aut, cre],
Christopher Chang [ctb],
Xavi Puig [ctb],
Jan Wigginton [ctb],
Leonardo Ortoleva [ctb],
William R. Engels [ctb]
Maintainer: Jan Graffelman <jan.graffelman@upc.edu>
Diff between HardyWeinberg versions 1.7.2 dated 2021-04-28 and 1.7.3 dated 2021-11-17
DESCRIPTION | 10 +-- MD5 | 36 ++++++----- NAMESPACE | 2 R/HWChisq.R | 136 ++++++++++++++++++++++++++----------------- R/HWTernaryPlot.R | 31 ++++++++- build/partial.rdb |binary data/Glyoxalase.rda |only inst/CITATION | 2 inst/doc/HardyWeinberg.Rnw | 2 inst/doc/HardyWeinberg.pdf |binary man/AllelesToTriangular.Rd | 2 man/Glyoxalase.Rd |only man/HWChisq.Rd | 34 ++++++++-- man/HWMissing.Rd | 2 man/HWNetwork.Rd | 2 man/HWPower.Rd | 3 man/HWTernaryPlot.Rd | 9 +- man/HardyWeinberg-package.Rd | 8 +- man/Markers.Rd | 2 vignettes/HardyWeinberg.Rnw | 2 20 files changed, 182 insertions(+), 101 deletions(-)
Title: GNU Privacy Guard for R
Description: Bindings to GnuPG for working with OpenGPG (RFC4880) cryptographic methods.
Includes utilities for public key encryption, creating and verifying digital signatures,
and managing your local keyring. Note that some functionality depends on the version of
GnuPG that is installed on the system. On Windows this package can be used together with
'GPG4Win' which provides a GUI for managing keys and entering passphrases.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between gpg versions 1.2.3 dated 2021-07-26 and 1.2.4 dated 2021-11-17
DESCRIPTION | 6 MD5 | 18 NEWS | 3 build/vignette.rds |binary cleanup | 3 configure | 3 inst/doc/intro.R | 6 inst/doc/intro.Rmd | 8 inst/doc/intro.html | 1559 ++++++++++++++++++++++++++++++++++++++++++++++------ vignettes/intro.Rmd | 8 10 files changed, 1425 insertions(+), 189 deletions(-)
Title: Depth Importance in Precision Medicine (DIPM) Method
Description: An implementation of the Depth Importance in Precision Medicine (DIPM) method
in Chen and Zhang (2020) <doi:10.1093/biostatistics/kxaa021> and Chen and
Zhang (2020) <doi:10.1007/978-3-030-46161-4_16>. The DIPM method is a classification
tree that searches for subgroups with especially poor or strong performance in a given treatment group.
Author: Cai Li [aut, cre],
Victoria Chen [aut],
Heping Zhang [aut]
Maintainer: Cai Li <cli9@ncsu.edu>
Diff between dipm versions 1.2 dated 2021-04-28 and 1.3 dated 2021-11-17
DESCRIPTION | 12 - MD5 | 29 +- R/coxph_R_to_C.R | 31 +- R/coxph_R_to_C_multi.R | 39 +-- R/dipm.R | 464 ++++++++++++++++++++++--------------------- R/ini_node.R | 38 +-- R/lm_R_to_C.R | 30 +- R/node_dipm.R | 131 ++++++------ R/pmprune.R | 70 +++--- R/print.dipm.R | 521 ++++++++++++++++++++++++------------------------- R/spmtree.R | 422 +++++++++++++++++++-------------------- man/dipm.Rd | 200 +++++++++--------- man/node_dipm.Rd | 48 ++-- man/pmprune.Rd | 44 ++-- man/spmtree.Rd | 182 ++++++++--------- tests |only 16 files changed, 1132 insertions(+), 1129 deletions(-)
Title: Continuous Cartogram
Description: Procedures for making continuous cartogram. Procedures available are:
flow based cartogram (Gastner & Newman (2004) <doi:10.1073/pnas.0400280101>),
fast flow based cartogram (Gastner, Seguy & More (2018) <doi:10.1073/pnas.1712674115>),
rubber band based cartogram (Dougenik et al. (1985)
<doi:10.1111/j.0033-0124.1985.00075.x>).
Author: Pierre-Andre Cornillon [aut, cre],
Florent Demoraes [aut],
Flow-Based-Cartograms [cph] (Author of core C code for gsm and gn
procedures)
Maintainer: Pierre-Andre Cornillon <pierre-andre.cornillon@univ-rennes2.fr>
Diff between cartogramR versions 1.0-3 dated 2021-10-11 and 1.0-5 dated 2021-11-17
DESCRIPTION | 10 ++--- MD5 | 24 ++++++------ R/cartogramR.R | 1 R/geom_cartogramR.R | 6 ++- src/cartogramR.c | 71 +++++++++++++++++++----------------- src/geomcarto.c | 1 src/gridanalysis.c | 9 +++- src/iocartogramR.c | 3 + src/makegraticule.c | 47 +++++++----------------- tests/dcn.Rout | 87 ++++++++++---------------------------------- tests/gn.Rout | 4 +- tests/gsm.R | 35 ++++++++++++++++++ tests/gsm.Rout | 101 ++++++++++++++++++++++++++++++++++++++++++++++++++-- 13 files changed, 241 insertions(+), 158 deletions(-)
Title: Case-Control Analysis of Multi-Allelic Loci
Description: Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.
Author: Derek Pappas <djpappas75@gmail.com>, Steve Mack <Steven.Mack@ucsf.edu>, Jill Hollenbach <Jill.Hollenbach@ucsf.edu>
Maintainer: Steve Mack <Steven.Mack@ucsf.edu>
Diff between BIGDAWG versions 2.3.6 dated 2021-02-11 and 3.0.3 dated 2021-11-17
DESCRIPTION | 14 -- MD5 | 57 ++++---- NEWS | 49 +++++++ R/A.R | 83 ++++++++---- R/A_ExonPtnAlign_functions.R | 146 ++++++++++++---------- R/A_support_functions.R | 282 +++++++++++++++++++++++++++---------------- R/A_wrapper.R | 41 +++++- R/BIGDAWG.R | 49 +++++-- R/ErrLog.R | 22 +-- R/H_MC.R | 107 ++++++++++------ R/L.R | 4 R/check_functions.R | 48 ++++--- R/data.R | 6 R/stat_functions.R | 67 ++++------ R/sysdata.rda |binary R/update_wrapper.R | 24 +-- build/vignette.rds |binary inst/doc/BIGDAWG.Rmd | 40 +++--- inst/doc/BIGDAWG.html | 38 +++-- man/A.wrapper.Rd | 5 man/AA.df.check.Rd | 4 man/AA.df.cs.Rd |only man/AlignObj.Create.Rd | 2 man/BIGDAWG.Rd | 5 man/Check.Params.Rd | 8 + man/Condense.EPL.Rd |only man/Create.Null.Table.Rd | 2 man/Exon.Filter.Rd |only man/ExonPtnList.Rd | 4 man/HWE.Rd | 34 ++--- vignettes/BIGDAWG.Rmd | 40 +++--- 31 files changed, 742 insertions(+), 439 deletions(-)
Title: Bayesian Preference Learning with the Mallows Rank Model
Description: An implementation of the Bayesian version of the Mallows rank model
(Vitelli et al., Journal of Machine Learning Research, 2018 <https://jmlr.org/papers/v18/15-481.html>;
Crispino et al., Annals of Applied Statistics, 2019 <doi:10.1214/18-AOAS1203>). Both Cayley, footrule,
Hamming, Kendall, Spearman, and Ulam distances are supported in the models. The rank data to be
analyzed can be in the form of complete rankings, top-k rankings, partially missing rankings, as well
as consistent and inconsistent pairwise preferences. Several functions for plotting and studying the
posterior distributions of parameters are provided. The package also provides functions for estimating
the partition function (normalizing constant) of the Mallows rank model, both with the importance
sampling algorithm of Vitelli et al. and asymptotic approximation with the IPFP algorithm
(Mukherjee, Annals of Statistics, 2016 <doi:10.1214/15-AOS1389>).
Author: Oystein Sorensen [aut, cre] (<https://orcid.org/0000-0003-0724-3542>),
Valeria Vitelli [aut] (<https://orcid.org/0000-0002-6746-0453>),
Marta Crispino [aut],
Qinghua Liu [aut],
Cristina Mollica [aut],
Luca Tardella [aut],
Anja Stein [aut],
Waldir Leoncio [ctr]
Maintainer: Oystein Sorensen <oystein.sorensen.1985@gmail.com>
Diff between BayesMallows versions 1.0.3 dated 2021-10-14 and 1.0.4 dated 2021-11-17
DESCRIPTION | 45 ++++++++------- MD5 | 50 +++++++++-------- NEWS.md | 16 +++++ R/assess_convergence.R | 2 R/assign_cluster.R | 3 + R/compute_mallows.R | 2 R/estimate_partition_function.R | 4 + R/misc.R | 36 ++++++++++++ R/plot_top_k.R | 16 +++-- R/rank_freq_distr.R | 2 build/partial.rdb |binary build/vignette.rds |binary man/compute_mallows.Rd | 2 man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/plot_top_k.Rd | 2 tests/testthat.R | 2 tests/testthat/test-assign_cluster.R |only tests/testthat/test-compute_mallows_mixtures.R |only tests/testthat/test-compute_posterior_intervals.R |only tests/testthat/test-print.R |only tests/testthat/test_assess_convergence.R | 53 ++++++++++++++++++ tests/testthat/test_compute_consensus.R | 2 tests/testthat/test_compute_mallows.R | 1 tests/testthat/test_partition_function.R | 26 +++++++++ tests/testthat/test_plot.R | 17 ++++++ tests/testthat/test_plot_top_k.R | 62 +++++++++++++--------- tests/testthat/test_sample_mallows.R | 17 ++++++ 28 files changed, 275 insertions(+), 85 deletions(-)
Title: Natural Abundance Correction of Mass Spectrometer Data
Description: An isotope natural abundance correction algorithm that
is needed especially for high resolution mass spectrometers. Supports
correction for 13C, 2H and 15N. Su X, Lu W and Rabinowitz J (2017)
<doi:10.1021/acs.analchem.7b00396>.
Author: Xiaoyang Su [aut] (<https://orcid.org/0000-0001-8081-1396>),
Lance Parsons [aut, cre] (<https://orcid.org/0000-0002-8521-714X>),
Yujue Wang [ctb] (<https://orcid.org/0000-0001-7088-1729>),
Princeton University [cph]
Maintainer: Lance Parsons <lparsons@princeton.edu>
Diff between accucor versions 0.2.4 dated 2021-04-12 and 0.3.0 dated 2021-11-17
DESCRIPTION | 15 MD5 | 26 NAMESPACE | 3 NEWS.md | 8 R/accucor_lib.R | 832 ++++++++++++++------- R/io_functions.R | 210 +++-- inst/extdata/elmaven_v0.11_export.csv |only inst/extdata/elmaven_v0.11_export_corrected.xlsx |only inst/extdata/test_TargetedGroupReport.csv |only man/carbon_isotope_correction.Rd | 8 man/clean_data_frame.Rd |only man/deuterium_isotope_correction.Rd | 8 man/natural_abundance_correction.Rd | 3 man/nitrogen_isotope_correction.Rd | 8 man/read_elmaven.Rd | 2 tests/testthat/test_natural_abundance_correction.R | 731 +++++++++++++----- 16 files changed, 1340 insertions(+), 514 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-07 0.9.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-03 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-12 0.5.1
2021-07-07 0.5.0
2021-03-19 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-22 2.2.4
2021-07-16 2.2.3
2021-06-24 2.2.2
2021-06-16 2.2.1
2021-03-01 2.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-05 1.2.1
2019-04-04 1.1.2
2019-01-15 1.1.1
Title: Interactive Analysis of UCSC Xena Data
Description: Provides functions and a Shiny application for downloading,
analyzing and visualizing datasets from UCSC Xena
(<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public
databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Yi Xiong [aut] (<https://orcid.org/0000-0002-4370-9824>),
Longfei Zhao [aut] (<https://orcid.org/0000-0002-6277-0137>),
Kai Gu [aut] (<https://orcid.org/0000-0002-0177-0774>),
Yin Li [aut],
Fei Zhao [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaShiny versions 1.1.1 dated 2021-07-30 and 1.1.2 dated 2021-11-17
DESCRIPTION | 8 +- MD5 | 31 +++++------ NAMESPACE | 1 NEWS.md | 8 ++ R/load_data.R | 43 +++++++++++++-- R/query_value.R | 4 + R/tcga_surv.R | 2 R/vis_pancan_value.R | 8 +- R/xenashiny.R | 2 README.md | 20 ++++++- inst/doc/api.html | 12 ++-- inst/extdata/tcga_armcalls.rda |only inst/shinyapp/modules/modules-pancan-radar.R | 2 inst/shinyapp/modules/modules-survival-analysis.R | 6 +- man/app_run.Rd | 5 + man/load_data.Rd | 62 ++++++++++++++-------- man/vis_identifier_grp_comparison.Rd | 8 +- 17 files changed, 156 insertions(+), 66 deletions(-)
Title: Clean Data Frames
Description: Provides a friendly interface for modifying data frames with a sequence of piped commands built upon the 'tidyverse' Wickham et al., (2019) <doi:10.21105/joss.01686> . The majority of commands wrap 'dplyr' mutate statements in a convenient way to concisely solve common issues that arise when tidying small to medium data sets. Includes smart defaults and allows flexible selection of columns via 'tidyselect'.
Author: Harrison Tietze [aut, cre]
Maintainer: Harrison Tietze <Harrison4192@gmail.com>
Diff between framecleaner versions 0.1.0 dated 2021-10-03 and 0.2.0 dated 2021-11-17
framecleaner-0.1.0/framecleaner/man/make_na.Rd |only framecleaner-0.1.0/framecleaner/man/set_dbl.Rd |only framecleaner-0.1.0/framecleaner/man/set_fct.Rd |only framecleaner-0.1.0/framecleaner/man/set_lgl.Rd |only framecleaner-0.2.0/framecleaner/DESCRIPTION | 20 framecleaner-0.2.0/framecleaner/LICENSE | 2 framecleaner-0.2.0/framecleaner/MD5 | 75 +- framecleaner-0.2.0/framecleaner/NAMESPACE | 18 framecleaner-0.2.0/framecleaner/NEWS.md | 2 framecleaner-0.2.0/framecleaner/R/clean_frame.R | 13 framecleaner-0.2.0/framecleaner/R/create_dummmies.R |only framecleaner-0.2.0/framecleaner/R/fill_na.R | 4 framecleaner-0.2.0/framecleaner/R/filter_for.R |only framecleaner-0.2.0/framecleaner/R/filter_missing.R | 34 - framecleaner-0.2.0/framecleaner/R/make_na.R | 58 +- framecleaner-0.2.0/framecleaner/R/recode_item.R | 10 framecleaner-0.2.0/framecleaner/R/select_otherwise.R | 10 framecleaner-0.2.0/framecleaner/R/set_chr.R |only framecleaner-0.2.0/framecleaner/R/set_date.R |only framecleaner-0.2.0/framecleaner/R/set_dbl.R |only framecleaner-0.2.0/framecleaner/R/set_fct.R |only framecleaner-0.2.0/framecleaner/R/set_int.R |only framecleaner-0.2.0/framecleaner/R/set_lgl.R |only framecleaner-0.2.0/framecleaner/R/setters.R | 243 --------- framecleaner-0.2.0/framecleaner/R/utilities.R | 90 --- framecleaner-0.2.0/framecleaner/inst/doc/cleanYourFrame.R | 1 framecleaner-0.2.0/framecleaner/inst/doc/cleanYourFrame.Rmd | 3 framecleaner-0.2.0/framecleaner/inst/doc/cleanYourFrame.html | 253 ++-------- framecleaner-0.2.0/framecleaner/man/as_integer16_or_64.Rd | 2 framecleaner-0.2.0/framecleaner/man/clean_frame.Rd | 14 framecleaner-0.2.0/framecleaner/man/create_dummies.Rd |only framecleaner-0.2.0/framecleaner/man/fct_or_prob.Rd | 4 framecleaner-0.2.0/framecleaner/man/fill_na.Rd | 4 framecleaner-0.2.0/framecleaner/man/filter_for.Rd |only framecleaner-0.2.0/framecleaner/man/filter_missing.data.frame.Rd | 15 framecleaner-0.2.0/framecleaner/man/is_integerish_character.Rd | 2 framecleaner-0.2.0/framecleaner/man/is_integery.Rd | 2 framecleaner-0.2.0/framecleaner/man/is_missing_or_inf.Rd |only framecleaner-0.2.0/framecleaner/man/is_probability.Rd | 2 framecleaner-0.2.0/framecleaner/man/make_na.data.frame.Rd |only framecleaner-0.2.0/framecleaner/man/recode_chr.Rd | 10 framecleaner-0.2.0/framecleaner/man/set_chr.Rd | 2 framecleaner-0.2.0/framecleaner/man/set_date.Rd | 23 framecleaner-0.2.0/framecleaner/man/set_dbl.data.frame.Rd |only framecleaner-0.2.0/framecleaner/man/set_fct.data.frame.Rd |only framecleaner-0.2.0/framecleaner/man/set_int.data.frame.Rd | 28 - framecleaner-0.2.0/framecleaner/man/set_lgl.data.frame.Rd |only framecleaner-0.2.0/framecleaner/vignettes/cleanYourFrame.Rmd | 3 48 files changed, 314 insertions(+), 633 deletions(-)
Title: Functions Useful in the Design and ANOVA of Experiments
Description: The content falls into the following groupings: (i) Data, (ii)
Factor manipulation functions, (iii) Design functions, (iv) ANOVA functions, (v)
Matrix functions, (vi) Projector and canonical efficiency functions, and (vii)
Miscellaneous functions. There is a vignette describing how to use the
design functions for randomizing and assessing designs available as a
vignette called 'DesignNotes'. The ANOVA functions facilitate the extraction of
information when the 'Error' function has been used in the call to 'aov'.
The package 'dae' can also be installed from
<http://chris.brien.name/rpackages/>.
Author: Chris Brien [aut, cre] (<https://orcid.org/0000-0003-0581-1817>)
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between dae versions 3.2-11 dated 2021-09-01 and 3.2-13 dated 2021-11-17
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/fac.functions.r | 21 +++++++++++++-------- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 8 ++++++++ inst/doc/DesignNotes.pdf |binary inst/doc/dae-manual.pdf |binary man/fac.multinested.Rd | 3 ++- tests/testthat/testOneStructure.r | 5 +++++ 10 files changed, 41 insertions(+), 22 deletions(-)