Title: R Templates from the University of Miami
Description: This holds some r markdown templates and a template to create a
research project in RStudio.
Author: Raymond Balise [aut, cre] (<https://orcid.org/0000-0002-9856-5901>),
Gabriel Odom [aut] (<https://orcid.org/0000-0003-1341-4555>)
Maintainer: Raymond Balise <balise@miami.edu>
Diff between rUM versions 0.3.0 dated 2021-07-26 and 0.3.1 dated 2021-11-22
DESCRIPTION | 9 LICENSE | 4 MD5 | 46 - NAMESPACE | 12 NEWS.md | 73 - R/make_project.R | 228 ++--- README.md | 110 +- build/vignette.rds |binary inst/bookFiles/bibliography.bib | 16 inst/bookFiles/style.css | 20 inst/doc/make_research_project.R | 24 inst/doc/make_research_project.Rmd | 68 - inst/doc/make_research_project.html | 420 +++++----- inst/rmarkdown/templates/bookdown_siteWithRum/skeleton/skeleton.Rmd | 102 +- inst/rmarkdown/templates/bookdown_siteWithRum/template.yaml | 4 inst/rmarkdown/templates/html2DetailsWithRum/skeleton/skeleton.Rmd | 84 +- inst/rmarkdown/templates/html2DetailsWithRum/template.yaml | 4 inst/rmarkdown/templates/html2WithRum/skeleton/skeleton.Rmd | 64 - inst/rmarkdown/templates/html2WithRum/template.yaml | 4 inst/rmarkdown/templates/pdf2ShowingLatex/skeleton/skeleton.Rmd | 88 +- inst/rmarkdown/templates/pdf2ShowingLatex/template.yaml | 4 inst/rstudio/templates/project/research_project.dcf | 6 man/make_project.Rd | 64 - vignettes/make_research_project.Rmd | 68 - 24 files changed, 765 insertions(+), 757 deletions(-)
Title: Libraries, Data Dictionaries, and a Data Step for R
Description: Contains a set of functions to create data libraries,
generate data dictionaries, and simulate a data step.
The libname() function will load a directory of data into
a library in one line of code. The dictionary() function
will generate data dictionaries for individual
data frames or an entire library. And the datestep() function
will perform row-by-row data processing.
Author: David J. Bosak
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between libr versions 1.2.1 dated 2021-10-09 and 1.2.2 dated 2021-11-22
DESCRIPTION | 6 ++--- MD5 | 40 +++++++++++++++++++++++++++------------ NEWS.md | 7 ++++++ R/dictionary.R | 5 +++- README.md | 6 ----- build/vignette.rds |binary inst/doc/libr-disclaimer.Rmd | 2 + inst/doc/libr-disclaimer.html | 1 inst/doc/libr-example1.R |only inst/doc/libr-example1.Rmd |only inst/doc/libr-example1.html |only inst/doc/libr-example2.R |only inst/doc/libr-example2.Rmd |only inst/doc/libr-example2.html |only inst/doc/libr-faq.R |only inst/doc/libr-faq.Rmd |only inst/doc/libr-faq.html |only inst/doc/libr.Rmd | 3 +- inst/doc/libr.html | 2 + man/images/example1a.png |only man/images/example1b.png |only man/images/example1c.png |only man/images/example2.png |only tests/testthat/test-dictionary.R | 16 +++++++++++++++ vignettes/libr-disclaimer.Rmd | 2 + vignettes/libr-example1.Rmd |only vignettes/libr-example2.Rmd |only vignettes/libr-faq.Rmd |only vignettes/libr.Rmd | 3 +- 29 files changed, 70 insertions(+), 23 deletions(-)
Title: Fast, Flexible, and User-Friendly Record Linkage Methods
Description: Provides a flexible set of tools for matching two un-linked data sets.
'fedmatch' allows for three ways to match data: exact matches, fuzzy matches, and multi-variable matches.
It also allows an easy combination of these three matches via the tier matching function.
Author: Melanie Friedrichs [aut],
Chris Webster [aut, cre],
Blake Marsh [aut],
Jacob Dice [aut],
Seung Lee [aut]
Maintainer: Chris Webster <chris0webster@gmail.com>
Diff between fedmatch versions 2.0.4 dated 2021-10-28 and 2.0.5 dated 2021-11-22
DESCRIPTION | 6 - MD5 | 58 ++++++++------- NAMESPACE | 1 NEWS.md | 7 + R/build_corpus.R | 11 +-- R/build_tier.R | 5 + R/clean_strings.R | 13 ++- R/fuzzy_match.R | 120 ++++++++++++++++++++++++++++----- R/merge_plus.R | 2 R/multivar_match.R | 15 +++- R/multivar_match_helpers.R | 10 ++ R/tier_match.R | 2 R/wgt_jaccard_distance.R | 7 + README.md | 1 build/vignette.rds |binary inst/doc/Fuzzy-matching.R | 23 ++++++ inst/doc/Fuzzy-matching.Rmd | 33 ++++++++- inst/doc/Fuzzy-matching.html | 127 +++++++++++++++++++++-------------- inst/doc/Multivar_matching.Rmd | 5 + inst/doc/Multivar_matching.html | 3 inst/doc/Using-tier-match.html | 14 +-- man/build_corpus.Rd |only man/build_tier.Rd | 5 + man/merge_plus.Rd | 2 tests/testthat/test_clean_strings.R |only tests/testthat/test_evaluate.R | 2 tests/testthat/test_fuzzy_merge.R | 46 ++++++++++++ tests/testthat/test_multivar_match.R | 33 +++++++++ tests/testthat/test_tier_match.R | 71 +++++++++++++++++++ vignettes/Fuzzy-matching.Rmd | 33 ++++++++- vignettes/Multivar_matching.Rmd | 5 + 31 files changed, 528 insertions(+), 132 deletions(-)
Title: Functional Data Analysis and Empirical Dynamics
Description: A versatile package that provides implementation of various
methods of Functional Data Analysis (FDA) and Empirical Dynamics. The core of this
package is Functional Principal Component Analysis (FPCA), a key technique for
functional data analysis, for sparsely or densely sampled random trajectories
and time courses, via the Principal Analysis by Conditional Estimation
(PACE) algorithm. This core algorithm yields covariance and mean functions,
eigenfunctions and principal component (scores), for both functional data and
derivatives, for both dense (functional) and sparse (longitudinal) sampling designs.
For sparse designs, it provides fitted continuous trajectories with confidence bands,
even for subjects with very few longitudinal observations. PACE is a viable and
flexible alternative to random effects modeling of longitudinal data. There is also a
Matlab version (PACE) that contains some methods not available on fdapace and vice
versa. Updates to fdapace were supported by grants from NIH Echo and NSF DMS-1712864 and DMS-2014626. Please cite our package if you use it (You may run the command citation("fdapace") to get the citation format and bibtex entry).
References: Wang, J.L., Chiou, J., Müller, H.G. (2016) <doi:10.1146/annurev-statistics-041715-033624>;
Chen, K., Zhang, X., Petersen, A., Müller, H.G. (2017) <doi:10.1007/s12561-015-9137-5>.
Author: Alvaro Gajardo [aut, cre],
Satarupa Bhattacharjee [aut],
Cody Carroll [aut] (<https://orcid.org/0000-0003-3525-8653>),
Yaqing Chen [aut],
Xiongtao Dai [aut],
Jianing Fan [aut],
Pantelis Z. Hadjipantelis [aut],
Kyunghee Han [aut],
Hao Ji [aut],
Changbo Zhu [aut],
Shu-Chin Lin [ctb],
Paromita Dubey [ctb],
Hans-Georg Müller [cph, ths, aut],
Jane-Ling Wang [cph, ths, aut]
Maintainer: Alvaro Gajardo <aegajardo@ucdavis.edu>
Diff between fdapace versions 0.5.7 dated 2021-05-24 and 0.5.8 dated 2021-11-22
DESCRIPTION | 18 + MD5 | 46 ++-- NEWS | 10 R/CheckData.R | 7 R/ConvertSupport.R | 3 R/CreateCovPlot.R | 128 ++++++++---- R/FLM.R | 16 - R/FPCA.R | 8 R/GetCEScores.R | 3 R/GetEigenAnalysisResults.R | 11 - R/MakeResultFPCA.R | 4 R/SetOptions.R | 9 R/predict.FPCA.R | 10 build/vignette.rds |binary inst/doc/dynFPCA.R |only inst/doc/dynFPCA.Rmd |only inst/doc/dynFPCA.html |only inst/doc/fdapaceVig.Rmd | 5 inst/doc/fdapaceVig.html | 468 ++++++++++++++------------------------------ man/CreateCovPlot.Rd | 12 - man/FLM.Rd | 2 man/FPCA.Rd | 5 src/RcppExports.cpp | 5 vignettes/dynFPCA.Rmd |only vignettes/fdapaceVig.Rmd | 5 vignettes/roxygen.bib | 27 +- 26 files changed, 372 insertions(+), 430 deletions(-)
Title: Tidy Characterizations of Model Performance
Description: Tidy tools for quantifying how well model fits to a data set
such as confusion matrices, class probability curve summaries, and
regression metrics (e.g., RMSE).
Author: Max Kuhn [aut],
Davis Vaughan [aut, cre],
RStudio [cph]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between yardstick versions 0.0.8 dated 2021-03-28 and 0.0.9 dated 2021-11-22
yardstick-0.0.8/yardstick/tests/testthat/test-class-f_meas-precision-warning-binary.txt |only yardstick-0.0.8/yardstick/tests/testthat/test-class-f_meas-precision-warning-multiclass.txt |only yardstick-0.0.8/yardstick/tests/testthat/test-class-f_meas-recall-warning-binary.txt |only yardstick-0.0.8/yardstick/tests/testthat/test-class-f_meas-recall-warning-multiclass.txt |only yardstick-0.0.8/yardstick/tests/testthat/test-class-ppv-warning-binary.txt |only yardstick-0.0.8/yardstick/tests/testthat/test-class-precision-warning-binary.txt |only yardstick-0.0.8/yardstick/tests/testthat/test-class-precision-warning-multiclass.txt |only yardstick-0.0.8/yardstick/tests/testthat/test-class-recall-warning-binary.txt |only yardstick-0.0.8/yardstick/tests/testthat/test-class-recall-warning-multiclass.txt |only yardstick-0.0.8/yardstick/tests/testthat/test-class-sens-warning-binary.txt |only yardstick-0.0.8/yardstick/tests/testthat/test-class-sens-warning-multiclass.txt |only yardstick-0.0.8/yardstick/tests/testthat/test-class-spec-warning-binary.txt |only yardstick-0.0.8/yardstick/tests/testthat/test-class-spec-warning-multiclass.txt |only yardstick-0.0.8/yardstick/tests/testthat/test-print-metric_set.txt |only yardstick-0.0.8/yardstick/tests/testthat/test_autoplot.rds |only yardstick-0.0.9/yardstick/DESCRIPTION | 36 - yardstick-0.0.9/yardstick/MD5 | 188 +++++----- yardstick-0.0.9/yardstick/NAMESPACE | 10 yardstick-0.0.9/yardstick/NEWS.md | 23 + yardstick-0.0.9/yardstick/R/class-precision.R | 8 yardstick-0.0.9/yardstick/R/class-recall.R | 8 yardstick-0.0.9/yardstick/R/class-sens.R | 71 +++ yardstick-0.0.9/yardstick/R/class-spec.R | 73 +++ yardstick-0.0.9/yardstick/R/conditions.R | 8 yardstick-0.0.9/yardstick/R/conf_mat.R | 4 yardstick-0.0.9/yardstick/R/misc.R | 25 + yardstick-0.0.9/yardstick/R/num-poisson_log_loss.R |only yardstick-0.0.9/yardstick/R/prob-gain_curve.R | 33 - yardstick-0.0.9/yardstick/R/prob-lift_curve.R | 33 - yardstick-0.0.9/yardstick/R/prob-mn_log_loss.R | 2 yardstick-0.0.9/yardstick/R/prob-pr_curve.R | 33 - yardstick-0.0.9/yardstick/R/prob-roc_auc.R | 78 ++-- yardstick-0.0.9/yardstick/R/prob-roc_curve.R | 47 +- yardstick-0.0.9/yardstick/README.md | 40 -- yardstick-0.0.9/yardstick/build/vignette.rds |binary yardstick-0.0.9/yardstick/inst/doc/custom-metrics.html | 89 ++-- yardstick-0.0.9/yardstick/inst/doc/metric-types.html | 20 - yardstick-0.0.9/yardstick/inst/doc/multiclass.html | 4 yardstick-0.0.9/yardstick/man/ccc.Rd | 2 yardstick-0.0.9/yardstick/man/conf_mat.Rd | 8 yardstick-0.0.9/yardstick/man/figures/README-roc-curves-1.png |binary yardstick-0.0.9/yardstick/man/gain_curve.Rd | 5 yardstick-0.0.9/yardstick/man/huber_loss.Rd | 2 yardstick-0.0.9/yardstick/man/huber_loss_pseudo.Rd | 2 yardstick-0.0.9/yardstick/man/iic.Rd | 2 yardstick-0.0.9/yardstick/man/lift_curve.Rd | 5 yardstick-0.0.9/yardstick/man/mae.Rd | 2 yardstick-0.0.9/yardstick/man/mape.Rd | 2 yardstick-0.0.9/yardstick/man/mase.Rd | 2 yardstick-0.0.9/yardstick/man/mn_log_loss.Rd | 2 yardstick-0.0.9/yardstick/man/mpe.Rd | 2 yardstick-0.0.9/yardstick/man/msd.Rd | 2 yardstick-0.0.9/yardstick/man/poisson_log_loss.Rd |only yardstick-0.0.9/yardstick/man/pr_curve.Rd | 5 yardstick-0.0.9/yardstick/man/rmse.Rd | 2 yardstick-0.0.9/yardstick/man/roc_curve.Rd | 5 yardstick-0.0.9/yardstick/man/rpd.Rd | 1 yardstick-0.0.9/yardstick/man/rpiq.Rd | 1 yardstick-0.0.9/yardstick/man/rsq.Rd | 1 yardstick-0.0.9/yardstick/man/rsq_trad.Rd | 1 yardstick-0.0.9/yardstick/man/sens.Rd | 15 yardstick-0.0.9/yardstick/man/smape.Rd | 2 yardstick-0.0.9/yardstick/man/spec.Rd | 15 yardstick-0.0.9/yardstick/tests/testthat/_snaps |only yardstick-0.0.9/yardstick/tests/testthat/data/test_autoplot.rds |only yardstick-0.0.9/yardstick/tests/testthat/helper-data.R | 15 yardstick-0.0.9/yardstick/tests/testthat/test-auc.R | 12 yardstick-0.0.9/yardstick/tests/testthat/test-class-accuracy.R | 2 yardstick-0.0.9/yardstick/tests/testthat/test-class-bal_accuracy.R | 4 yardstick-0.0.9/yardstick/tests/testthat/test-class-detection_prevalence.R | 4 yardstick-0.0.9/yardstick/tests/testthat/test-class-f_meas.R | 74 +-- yardstick-0.0.9/yardstick/tests/testthat/test-class-j_index.R | 4 yardstick-0.0.9/yardstick/tests/testthat/test-class-kap.R | 7 yardstick-0.0.9/yardstick/tests/testthat/test-class-mcc.R | 4 yardstick-0.0.9/yardstick/tests/testthat/test-class-npv.R | 4 yardstick-0.0.9/yardstick/tests/testthat/test-class-ppv.R | 15 yardstick-0.0.9/yardstick/tests/testthat/test-class-precision.R | 25 - yardstick-0.0.9/yardstick/tests/testthat/test-class-recall.R | 22 - yardstick-0.0.9/yardstick/tests/testthat/test-class-sens.R | 48 +- yardstick-0.0.9/yardstick/tests/testthat/test-class-spec.R | 48 +- yardstick-0.0.9/yardstick/tests/testthat/test-conf_mat.R | 20 - yardstick-0.0.9/yardstick/tests/testthat/test-error-handling.R | 111 ++--- yardstick-0.0.9/yardstick/tests/testthat/test-event-level.R | 8 yardstick-0.0.9/yardstick/tests/testthat/test-flatten.R | 15 yardstick-0.0.9/yardstick/tests/testthat/test-global-option.R | 2 yardstick-0.0.9/yardstick/tests/testthat/test-num-poisson_log_loss.R |only yardstick-0.0.9/yardstick/tests/testthat/test-numeric.R | 53 +- yardstick-0.0.9/yardstick/tests/testthat/test-prob-average_precision.R | 25 - yardstick-0.0.9/yardstick/tests/testthat/test-prob-gain-lift.R | 14 yardstick-0.0.9/yardstick/tests/testthat/test-prob-gain_capture.R | 2 yardstick-0.0.9/yardstick/tests/testthat/test-prob-mn_log_loss.R | 8 yardstick-0.0.9/yardstick/tests/testthat/test-prob-pr.R | 9 yardstick-0.0.9/yardstick/tests/testthat/test-prob-roc.R | 110 +++-- yardstick-0.0.9/yardstick/tests/testthat/test-prob-roc_aunp.R | 10 yardstick-0.0.9/yardstick/tests/testthat/test-prob-roc_aunu.R | 10 yardstick-0.0.9/yardstick/tests/testthat/test_autoplot.R | 172 ++++----- yardstick-0.0.9/yardstick/tests/testthat/test_metrics.R | 19 - yardstick-0.0.9/yardstick/tests/testthat/test_vec2table.R | 3 98 files changed, 918 insertions(+), 880 deletions(-)
Title: Smooth Additive Quantile Regression Models
Description: Smooth additive quantile regression models, fitted using
the methods of Fasiolo et al. (2020) <doi:10.1080/01621459.2020.1725521>.
See Fasiolo at al. (2021) <doi:10.18637/jss.v100.i09> for an introduction to the package. Differently from
'quantreg', the smoothing parameters are estimated automatically by marginal
loss minimization, while the regression coefficients are estimated using either
PIRLS or Newton algorithm. The learning rate is determined so that the Bayesian
credible intervals of the estimated effects have approximately the correct
coverage. The main function is qgam() which is similar to gam() in 'mgcv', but
fits non-parametric quantile regression models.
Author: Matteo Fasiolo [aut, cre],
Simon N. Wood [ctb],
Margaux Zaffran [ctb],
Yannig Goude [ctb],
Raphael Nedellec [ctb]
Maintainer: Matteo Fasiolo <matteo.fasiolo@gmail.com>
Diff between qgam versions 1.3.3 dated 2021-04-27 and 1.3.4 dated 2021-11-22
qgam-1.3.3/qgam/README.md |only qgam-1.3.4/qgam/DESCRIPTION | 11 +- qgam-1.3.4/qgam/MD5 | 26 ++--- qgam-1.3.4/qgam/R/I_cleanData.R | 4 qgam-1.3.4/qgam/R/mqgam.R | 3 qgam-1.3.4/qgam/R/qgam.R | 3 qgam-1.3.4/qgam/build/partial.rdb |only qgam-1.3.4/qgam/build/vignette.rds |binary qgam-1.3.4/qgam/inst/CITATION | 36 ++++--- qgam-1.3.4/qgam/inst/doc/qgam.R | 54 +++++++++++ qgam-1.3.4/qgam/inst/doc/qgam.Rmd | 160 +++++++++++++++++----------------- qgam-1.3.4/qgam/inst/doc/qgam.html | 172 ++++++++++++++++++++----------------- qgam-1.3.4/qgam/man/mqgam.Rd | 4 qgam-1.3.4/qgam/man/qgam.Rd | 4 qgam-1.3.4/qgam/vignettes/qgam.Rmd | 160 +++++++++++++++++----------------- 15 files changed, 363 insertions(+), 274 deletions(-)
Title: Online Bayesian Methods for Change Point Analysis
Description: It implements the online Bayesian methods for change point analysis. It can
also perform missing data imputation with methods from 'VIM'. The reference
is Yigiter A, Chen J, An L, Danacioglu N (2015) <doi:10.1080/02664763.2014.1001330>.
Author: Hongyan Xu [cre, aut],
Ayten Yigiter [aut],
Jie Chen [aut]
Maintainer: Hongyan Xu <hxu@augusta.edu>
Diff between onlineBcp versions 0.1.2 dated 2021-11-18 and 0.1.3 dated 2021-11-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 8 ++++++++ R/online_cp.R | 2 +- 4 files changed, 15 insertions(+), 7 deletions(-)
Title: Automating the Fitting of Double Linear Mixed Models in 'JAGS'
and 'nimble'
Description: Automates fitting of double GLM in 'JAGS'. Includes automatic
generation of 'JAGS' scripts, running 'JAGS' or 'nimble' via the 'rjags'
and 'nimble' package, and summarizing the resulting output. For further
information see Bonner, Kim, Westneat, Mutzel, Wright, and Schofield
<doi:10.18637/jss.v100.i10>.
Author: Simon Bonner [aut, cre] (<https://orcid.org/0000-0003-2063-4572>),
Hanna Kim [aut]
Maintainer: Simon Bonner <simon.bonner@uwo.ca>
Diff between dalmatian versions 0.6.3 dated 2021-11-03 and 1.0.0 dated 2021-11-22
DESCRIPTION | 10 +++-- MD5 | 68 +++++++++++++++++++------------------- R/dalmatian.R | 25 +++++++++++-- R/generate_jags_inits.R | 4 +- R/post_processing.R | 57 ++++++++++++++++++++++++++++--- R/predict.R | 8 ++-- build/partial.rdb |only build/vignette.rds |binary inst/CITATION |only inst/doc/beta-binomial-1.html | 4 +- inst/doc/gamma-1.Rmd | 2 - inst/doc/gamma-1.html | 6 +-- inst/doc/negative-binomial-1.html | 4 +- inst/doc/pied-flycatchers-1.Rmd | 6 +-- inst/doc/pied-flycatchers-1.html | 10 ++--- inst/doc/pied-flycatchers-2.Rmd | 2 - inst/doc/pied-flycatchers-2.html | 6 +-- inst/doc/pied-flycatchers-3.html | 4 +- inst/doc/weights-1-simulate.html | 28 +++++++-------- man/caterpillar.dalmatian.Rd | 9 ++++- man/coef.dalmatian.Rd | 7 +++ man/convergence.Rd | 7 +++ man/convergence.dalmatian.Rd | 9 ++++- man/dalmatian.Rd | 17 ++++++--- man/plot.dalmatian.Rd | 7 +++ man/predict.dalmatian.Rd | 6 +-- man/print.dalmatian.Rd | 7 +++ man/print.dalmatian.summary.Rd | 7 +++ man/ranef.Rd | 7 +++ man/ranef.dalmatian.Rd | 11 +++++- man/setJAGSInits.Rd | 4 +- man/summary.dalmatian.Rd | 9 ++++- man/traceplots.dalmatian.Rd | 9 ++++- vignettes/gamma-1.Rmd | 2 - vignettes/pied-flycatchers-1.Rmd | 6 +-- vignettes/pied-flycatchers-2.Rmd | 2 - 36 files changed, 259 insertions(+), 111 deletions(-)
Title: HTTP Client
Description: A simple HTTP client, with tools for making HTTP requests,
and mocking HTTP requests. The package is built on R6, and takes
inspiration from Ruby's 'faraday' gem (<https://rubygems.org/gems/faraday>).
The package name is a play on curl, the widely used command line tool
for HTTP, and this package is built on top of the R package 'curl', an
interface to 'libcurl' (<https://curl.se/libcurl/>).
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between crul versions 1.1.0 dated 2021-02-15 and 1.2.0 dated 2021-11-22
DESCRIPTION | 8 MD5 | 62 ++-- NAMESPACE | 1 NEWS.md | 19 + R/async-queue.R | 38 ++ R/async.R | 1 R/asyncvaried.R | 15 - R/client.R | 5 R/httprequest.R | 1 R/paginator.R | 1 R/response.R | 1 build/vignette.rds |binary inst/doc/async.html | 359 ++++++++++++------------- inst/doc/best-practices-api-packages.Rmd | 4 inst/doc/best-practices-api-packages.html | 153 +++++----- inst/doc/choosing-a-client.html | 31 -- inst/doc/crul.html | 383 +++++++++++++-------------- inst/doc/curl-options.html | 239 ++++++++-------- inst/doc/how-to-use-crul.html | 283 ++++++++++--------- man/Async.Rd | 8 man/AsyncQueue.Rd | 98 ++++++ man/AsyncVaried.Rd | 13 man/HttpClient.Rd | 8 man/HttpRequest.Rd | 8 man/HttpResponse.Rd | 8 man/Paginator.Rd | 8 tests/testthat/test-async.R | 34 +- tests/testthat/test-asyncqueue.R | 45 ++- tests/testthat/test-asyncvaried.R | 2 tests/testthat/test-headers.R | 17 + vignettes/best-practices-api-packages.Rmd | 4 vignettes/best-practices-api-packages.Rmd.og | 2 32 files changed, 1065 insertions(+), 794 deletions(-)
Title: Bayesian Regression Models using 'Stan'
Description: Fit Bayesian generalized (non-)linear multivariate multilevel models
using 'Stan' for full Bayesian inference. A wide range of distributions
and link functions are supported, allowing users to fit -- among others --
linear, robust linear, count data, survival, response times, ordinal,
zero-inflated, hurdle, and even self-defined mixture models all in a
multilevel context. Further modeling options include non-linear and
smooth terms, auto-correlation structures, censored data, meta-analytic
standard errors, and quite a few more. In addition, all parameters of the
response distribution can be predicted in order to perform distributional
regression. Prior specifications are flexible and explicitly encourage
users to apply prior distributions that actually reflect their beliefs.
Model fit can easily be assessed and compared with posterior predictive
checks and leave-one-out cross-validation. References: Bürkner (2017)
<doi:10.18637/jss.v080.i01>; Bürkner (2018) <doi:10.32614/RJ-2018-017>;
Bürkner (2021) <doi:10.18637/jss.v100.i05>; Carpenter et al. (2017)
<doi:10.18637/jss.v076.i01>.
Author: Paul-Christian Bürkner [aut, cre],
Jonah Gabry [ctb],
Sebastian Weber [ctb],
Andrew Johnson [ctb],
Martin Modrak [ctb],
Hamada S. Badr [ctb],
Frank Weber [ctb],
Mattan S. Ben-Shachar [ctb]
Maintainer: Paul-Christian Bürkner <paul.buerkner@gmail.com>
Diff between brms versions 2.16.1 dated 2021-08-23 and 2.16.3 dated 2021-11-22
brms-2.16.1/brms/man/varsel.brmsfit.Rd |only brms-2.16.3/brms/DESCRIPTION | 25 brms-2.16.3/brms/MD5 | 106 brms-2.16.3/brms/NAMESPACE | 10 brms-2.16.3/brms/NEWS.md | 18 brms-2.16.3/brms/R/backends.R | 74 brms-2.16.3/brms/R/brm.R | 1176 ++-- brms-2.16.3/brms/R/brm_multiple.R | 478 - brms-2.16.3/brms/R/brmsfit-helpers.R | 1969 +++---- brms-2.16.3/brms/R/brmsterms.R | 93 brms-2.16.3/brms/R/conditional_smooths.R | 470 - brms-2.16.3/brms/R/data-predictor.R | 12 brms-2.16.3/brms/R/families.R | 3604 +++++++------- brms-2.16.3/brms/R/formula-ac.R | 1337 ++--- brms-2.16.3/brms/R/formula-re.R | 6 brms-2.16.3/brms/R/kfold.R | 712 +- brms-2.16.3/brms/R/loo.R | 16 brms-2.16.3/brms/R/make_stancode.R | 839 +-- brms-2.16.3/brms/R/misc.R | 68 brms-2.16.3/brms/R/priors.R | 4166 ++++++++-------- brms-2.16.3/brms/R/projpred.R | 414 - brms-2.16.3/brms/R/reloo.R | 335 - brms-2.16.3/brms/R/rename_pars.R | 1269 ++--- brms-2.16.3/brms/R/restructure.R | 1440 ++--- brms-2.16.3/brms/R/stan-helpers.R | 518 +- brms-2.16.3/brms/R/stan-likelihood.R | 1935 +++---- brms-2.16.3/brms/R/stan-predictor.R | 4533 +++++++++--------- brms-2.16.3/brms/R/stan-prior.R | 1221 ++-- brms-2.16.3/brms/R/stan-response.R | 1332 ++--- brms-2.16.3/brms/R/update.R | 611 +- brms-2.16.3/brms/README.md | 714 +- brms-2.16.3/brms/build/vignette.rds |binary brms-2.16.3/brms/inst/CITATION | 95 brms-2.16.3/brms/inst/doc/brms_customfamilies.Rmd | 682 +- brms-2.16.3/brms/inst/doc/brms_customfamilies.html | 60 brms-2.16.3/brms/inst/doc/brms_distreg.html | 90 brms-2.16.3/brms/inst/doc/brms_families.html | 4 brms-2.16.3/brms/inst/doc/brms_missings.Rmd | 474 - brms-2.16.3/brms/inst/doc/brms_missings.html | 46 brms-2.16.3/brms/inst/doc/brms_monotonic.Rmd | 468 - brms-2.16.3/brms/inst/doc/brms_monotonic.html | 122 brms-2.16.3/brms/inst/doc/brms_multilevel.pdf |binary brms-2.16.3/brms/inst/doc/brms_multivariate.html | 176 brms-2.16.3/brms/inst/doc/brms_nonlinear.html | 112 brms-2.16.3/brms/inst/doc/brms_overview.pdf |binary brms-2.16.3/brms/inst/doc/brms_phylogenetics.html | 102 brms-2.16.3/brms/inst/doc/brms_threading.html | 102 brms-2.16.3/brms/man/get_refmodel.brmsfit.Rd | 59 brms-2.16.3/brms/man/recompile_model.Rd |only brms-2.16.3/brms/tests/testthat/tests.brm.R | 262 - brms-2.16.3/brms/tests/testthat/tests.brmsterms.R | 178 brms-2.16.3/brms/tests/testthat/tests.make_standata.R | 2139 ++++---- brms-2.16.3/brms/vignettes/brms_customfamilies.Rmd | 682 +- brms-2.16.3/brms/vignettes/brms_missings.Rmd | 474 - brms-2.16.3/brms/vignettes/brms_monotonic.Rmd | 468 - 55 files changed, 18260 insertions(+), 18036 deletions(-)
Title: Estimate Gaussian or Student's t Mixture Vector Autoregressive
Model
Description: Unconstrained and constrained maximum likelihood estimation of structural and reduced form
Gaussian mixture vector autoregressive, Student's t mixture vector autoregressive, and Gaussian and Student's t
mixture vector autoregressive models, quantile residual tests, graphical diagnostics,
simulations, forecasting, and estimation of generalized impulse response function and generalized
forecast error variance decomposition.
Leena Kalliovirta, Mika Meitz, Pentti Saikkonen (2016) <doi:10.1016/j.jeconom.2016.02.012>,
Savi Virolainen (2020) <arXiv:2007.04713>,
Savi Virolainen (2021) <arXiv:2109.13648>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between gmvarkit versions 1.5.0 dated 2021-09-17 and 2.0.0 dated 2021-11-22
gmvarkit-1.5.0/gmvarkit/R/GMVARconstruction.R |only gmvarkit-1.5.0/gmvarkit/R/simulateGMVAR.R |only gmvarkit-1.5.0/gmvarkit/inst/doc/intro-to-gmvarkit.R |only gmvarkit-1.5.0/gmvarkit/inst/doc/intro-to-gmvarkit.Rmd |only gmvarkit-1.5.0/gmvarkit/inst/doc/intro-to-gmvarkit.html |only gmvarkit-1.5.0/gmvarkit/man/check_gmvar.Rd |only gmvarkit-1.5.0/gmvarkit/man/print.gmvarpred.Rd |only gmvarkit-1.5.0/gmvarkit/tests/testthat/test_gmvarConstruction.R |only gmvarkit-1.5.0/gmvarkit/tests/testthat/test_simulateGMVAR.R |only gmvarkit-1.5.0/gmvarkit/vignettes/intro-to-gmvarkit.Rmd |only gmvarkit-2.0.0/gmvarkit/DESCRIPTION | 20 gmvarkit-2.0.0/gmvarkit/MD5 | 284 +- gmvarkit-2.0.0/gmvarkit/NAMESPACE | 17 gmvarkit-2.0.0/gmvarkit/NEWS.md | 17 gmvarkit-2.0.0/gmvarkit/R/GIRFandGFEVD.R | 179 - gmvarkit-2.0.0/gmvarkit/R/GSMVARconstruction.R |only gmvarkit-2.0.0/gmvarkit/R/MAINest.R | 217 - gmvarkit-2.0.0/gmvarkit/R/WaldAndLR.R | 88 gmvarkit-2.0.0/gmvarkit/R/argumentChecks.R | 216 + gmvarkit-2.0.0/gmvarkit/R/backwardCompatibility.R |only gmvarkit-2.0.0/gmvarkit/R/diagnosticPlot.R | 117 gmvarkit-2.0.0/gmvarkit/R/generateParams.R | 306 +- gmvarkit-2.0.0/gmvarkit/R/geneticAlgorithm.R | 144 - 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gmvarkit-2.0.0/gmvarkit/man/GFEVD.Rd | 35 gmvarkit-2.0.0/gmvarkit/man/GIRF.Rd | 65 gmvarkit-2.0.0/gmvarkit/man/GMVAR.Rd | 224 - gmvarkit-2.0.0/gmvarkit/man/GSMVAR.Rd |only gmvarkit-2.0.0/gmvarkit/man/LR_test.Rd | 22 gmvarkit-2.0.0/gmvarkit/man/Wald_test.Rd | 20 gmvarkit-2.0.0/gmvarkit/man/add_data.Rd | 31 gmvarkit-2.0.0/gmvarkit/man/alt_gmvar.Rd | 31 gmvarkit-2.0.0/gmvarkit/man/alt_gsmvar.Rd |only gmvarkit-2.0.0/gmvarkit/man/calc_gradient.Rd | 28 gmvarkit-2.0.0/gmvarkit/man/change_parametrization.Rd | 137 - gmvarkit-2.0.0/gmvarkit/man/change_regime.Rd | 152 - gmvarkit-2.0.0/gmvarkit/man/check_constraints.Rd | 6 gmvarkit-2.0.0/gmvarkit/man/check_data.Rd | 2 gmvarkit-2.0.0/gmvarkit/man/check_gsmvar.Rd |only gmvarkit-2.0.0/gmvarkit/man/check_null_data.Rd | 8 gmvarkit-2.0.0/gmvarkit/man/check_pMd.Rd | 8 gmvarkit-2.0.0/gmvarkit/man/check_parameters.Rd | 143 - gmvarkit-2.0.0/gmvarkit/man/cond_moment_plot.Rd | 29 gmvarkit-2.0.0/gmvarkit/man/cond_moments.Rd | 172 - gmvarkit-2.0.0/gmvarkit/man/diagnostic_plot.Rd | 31 gmvarkit-2.0.0/gmvarkit/man/dlogmultinorm.Rd | 10 gmvarkit-2.0.0/gmvarkit/man/dlogmultistudent.Rd |only gmvarkit-2.0.0/gmvarkit/man/fitGMVAR.Rd | 94 gmvarkit-2.0.0/gmvarkit/man/fitGSMVAR.Rd |only gmvarkit-2.0.0/gmvarkit/man/form_boldA.Rd | 8 gmvarkit-2.0.0/gmvarkit/man/get_Sigmas.Rd | 12 gmvarkit-2.0.0/gmvarkit/man/get_alpha_mt.Rd | 14 gmvarkit-2.0.0/gmvarkit/man/get_boldA_eigens.Rd | 8 gmvarkit-2.0.0/gmvarkit/man/get_minval.Rd | 4 gmvarkit-2.0.0/gmvarkit/man/get_omega_eigens.Rd | 8 gmvarkit-2.0.0/gmvarkit/man/get_regime_autocovs.Rd | 12 gmvarkit-2.0.0/gmvarkit/man/get_regime_autocovs_int.Rd | 139 - gmvarkit-2.0.0/gmvarkit/man/get_regime_means.Rd | 12 gmvarkit-2.0.0/gmvarkit/man/get_regime_means_int.Rd | 137 - gmvarkit-2.0.0/gmvarkit/man/get_test_Omega.Rd | 149 - gmvarkit-2.0.0/gmvarkit/man/get_varying_h.Rd |only gmvarkit-2.0.0/gmvarkit/man/gmvar_to_gsmvar.Rd |only gmvarkit-2.0.0/gmvarkit/man/gmvar_to_sgmvar.Rd | 33 gmvarkit-2.0.0/gmvarkit/man/gmvarkit.Rd | 6 gmvarkit-2.0.0/gmvarkit/man/gsmvar_to_sgsmvar.Rd |only gmvarkit-2.0.0/gmvarkit/man/in_paramspace.Rd | 143 - gmvarkit-2.0.0/gmvarkit/man/in_paramspace_int.Rd | 143 - gmvarkit-2.0.0/gmvarkit/man/is_stationary.Rd | 47 gmvarkit-2.0.0/gmvarkit/man/iterate_more.Rd | 34 gmvarkit-2.0.0/gmvarkit/man/loglikelihood.Rd | 155 - gmvarkit-2.0.0/gmvarkit/man/loglikelihood_int.Rd | 174 - gmvarkit-2.0.0/gmvarkit/man/n_params.Rd | 17 gmvarkit-2.0.0/gmvarkit/man/pick_Am.Rd | 133 gmvarkit-2.0.0/gmvarkit/man/pick_Ami.Rd | 133 gmvarkit-2.0.0/gmvarkit/man/pick_Omegas.Rd | 43 gmvarkit-2.0.0/gmvarkit/man/pick_W.Rd | 45 gmvarkit-2.0.0/gmvarkit/man/pick_allA.Rd | 43 gmvarkit-2.0.0/gmvarkit/man/pick_all_phi0_A.Rd | 43 gmvarkit-2.0.0/gmvarkit/man/pick_alphas.Rd | 47 gmvarkit-2.0.0/gmvarkit/man/pick_df.Rd |only gmvarkit-2.0.0/gmvarkit/man/pick_lambdas.Rd | 45 gmvarkit-2.0.0/gmvarkit/man/pick_phi0.Rd | 43 gmvarkit-2.0.0/gmvarkit/man/pick_regime.Rd | 198 - gmvarkit-2.0.0/gmvarkit/man/plot.gmvarpred.Rd | 25 gmvarkit-2.0.0/gmvarkit/man/plot.gsmvarpred.Rd |only gmvarkit-2.0.0/gmvarkit/man/predict.gmvar.Rd | 43 gmvarkit-2.0.0/gmvarkit/man/predict.gsmvar.Rd |only gmvarkit-2.0.0/gmvarkit/man/print.gmvar.Rd |only gmvarkit-2.0.0/gmvarkit/man/print.gmvarsum.Rd | 18 gmvarkit-2.0.0/gmvarkit/man/print.gsmvarpred.Rd |only gmvarkit-2.0.0/gmvarkit/man/print.gsmvarsum.Rd |only gmvarkit-2.0.0/gmvarkit/man/print_std_errors.Rd | 16 gmvarkit-2.0.0/gmvarkit/man/profile_logliks.Rd | 25 gmvarkit-2.0.0/gmvarkit/man/quantile_residual_tests.Rd | 32 gmvarkit-2.0.0/gmvarkit/man/quantile_residuals.Rd | 20 gmvarkit-2.0.0/gmvarkit/man/quantile_residuals_int.Rd | 149 - gmvarkit-2.0.0/gmvarkit/man/random_covmat.Rd | 11 gmvarkit-2.0.0/gmvarkit/man/random_df.Rd |only gmvarkit-2.0.0/gmvarkit/man/random_ind.Rd | 14 gmvarkit-2.0.0/gmvarkit/man/random_ind2.Rd | 14 gmvarkit-2.0.0/gmvarkit/man/redecompose_Omegas.Rd | 8 gmvarkit-2.0.0/gmvarkit/man/reform_constrained_pars.Rd | 137 - 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gmvarkit-2.0.0/gmvarkit/man/update_numtols.Rd | 25 gmvarkit-2.0.0/gmvarkit/man/warn_df.Rd |only gmvarkit-2.0.0/gmvarkit/man/warn_eigens.Rd | 4 gmvarkit-2.0.0/gmvarkit/tests/testthat/test_GIRFandGFEVD.R | 57 gmvarkit-2.0.0/gmvarkit/tests/testthat/test_MAINest.R | 16 gmvarkit-2.0.0/gmvarkit/tests/testthat/test_S3methods.R | 77 gmvarkit-2.0.0/gmvarkit/tests/testthat/test_argumentChecks.R | 226 + gmvarkit-2.0.0/gmvarkit/tests/testthat/test_generateParams.R | 67 gmvarkit-2.0.0/gmvarkit/tests/testthat/test_gsmvarConstruction.R |only gmvarkit-2.0.0/gmvarkit/tests/testthat/test_loglikelihood.R | 307 ++ gmvarkit-2.0.0/gmvarkit/tests/testthat/test_numericalDifferentiation.R | 32 gmvarkit-2.0.0/gmvarkit/tests/testthat/test_parameterReforms.R | 411 ++- gmvarkit-2.0.0/gmvarkit/tests/testthat/test_pickParams.R | 1362 ++++++---- gmvarkit-2.0.0/gmvarkit/tests/testthat/test_quantileResidualTests.R | 102 gmvarkit-2.0.0/gmvarkit/tests/testthat/test_quantileResiduals.R | 159 - gmvarkit-2.0.0/gmvarkit/tests/testthat/test_simulate.R |only gmvarkit-2.0.0/gmvarkit/tests/testthat/test_standardErrors.R | 35 gmvarkit-2.0.0/gmvarkit/tests/testthat/test_uncondMoments.R | 225 + gmvarkit-2.0.0/gmvarkit/tests/testthat/test_waldAndLR.R | 4 gmvarkit-2.0.0/gmvarkit/vignettes/gmvarkit-vignette.Rnw |only gmvarkit-2.0.0/gmvarkit/vignettes/refs.bib |only 163 files changed, 7542 insertions(+), 4137 deletions(-)
Title: Single Tree Simulator
Description: Framework to build an individual tree simulator.
Author: Clara Anton Fernandez [aut, cre]
Maintainer: Clara Anton Fernandez <caf@nibio.no>
Diff between sitree versions 0.1-11 dated 2021-11-11 and 0.1-12 dated 2021-11-22
DESCRIPTION | 10 - MD5 | 12 - R/sitreesummary.R | 367 ++++++++++++++++++++++++++++---------------- R/zzz.R | 2 inst/doc/SiTree.html | 70 ++++---- inst/doc/TestEquations.html | 4 man/sitreesummary.Rd | 5 7 files changed, 294 insertions(+), 176 deletions(-)
Title: Rendering Font into 'data.frame'
Description: Extract glyph information from a font file, and translate the
outline curves to flattened paths or tessellated polygons. The converted
data is returned as a 'data.frame' in easy-to-plot format.
Author: Hiroaki Yutani [aut, cre] (<https://orcid.org/0000-0002-3385-7233>)
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between string2path versions 0.0.3 dated 2021-09-26 and 0.0.4 dated 2021-11-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ tools/configure.R | 6 +++++- 4 files changed, 16 insertions(+), 7 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data
management system with support for the Structured Query Language (SQL). This package includes all of
DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Mühleisen [aut, cre] (<https://orcid.org/0000-0001-8552-0029>),
Mark Raasveldt [aut] (<https://orcid.org/0000-0001-5005-6844>),
DuckDB Contributors [aut],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrochers [cph],
Victor Zverovich [cph],
RAD Game Tools [cph],
Valve Software [cph],
Rich Geldreich [cph],
Tenacious Software LLC [cph],
The RE2 Authors [cph],
Google Inc. [cph],
Facebook Inc. [cph],
Steven G. Johnson [cph],
Jiahao Chen [cph],
Tony Kelman [cph],
Jonas Fonseca [cph],
Lukas Fittl [cph],
Salvatore Sanfilippo [cph],
Art.sy, Inc. [cph],
Oran Agra [cph],
Redis Labs, Inc. [cph],
Melissa O'Neill [cph],
PCG Project contributors [cph]
Maintainer: Hannes Mühleisen <hannes@cwi.nl>
Diff between duckdb versions 0.3.1 dated 2021-11-16 and 0.3.1-1 dated 2021-11-22
DESCRIPTION | 6 MD5 | 43 ++--- R/Connection.R | 2 src/duckdb/src/common/types/interval.cpp | 46 ++++++ src/duckdb/src/common/vector_operations/vector_cast.cpp | 74 +++++----- src/duckdb/src/execution/operator/persistent/buffered_csv_reader.cpp | 48 ++++-- src/duckdb/src/function/scalar/date/date_part.cpp | 15 +- src/duckdb/src/function/scalar/operators/add.cpp | 50 ------ src/duckdb/src/function/scalar/string/substring.cpp | 26 +-- src/duckdb/src/function/table/copy_csv.cpp | 6 src/duckdb/src/function/table/read_csv.cpp | 3 src/duckdb/src/function/table/version/pragma_version.cpp | 4 src/duckdb/src/include/duckdb/common/types/interval.hpp | 11 + src/duckdb/src/include/duckdb/execution/operator/persistent/buffered_csv_reader.hpp | 12 - src/duckdb/src/include/duckdb/function/scalar/string_functions.hpp | 2 src/duckdb/src/parser/parsed_data/alter_table_info.cpp | 3 src/duckdb/third_party/libpg_query/pg_functions.cpp | 26 ++- src/include/typesr.hpp | 4 src/scan.cpp | 8 - src/statement.cpp | 9 + src/types.cpp | 4 tests/testthat/test_dbwritetable.R |only tests/testthat/test_factor.R | 15 +- 23 files changed, 252 insertions(+), 165 deletions(-)
Title: Load CPS Microdata into R Using the 'Census Bureau Data' API
Description: Load Current Population Survey (CPS) microdata into R using the
'Census Bureau Data' API
(<https://www.census.gov/data/developers/data-sets.html>), including basic
monthly CPS and CPS ASEC microdata.
Author: Matt Saenz [aut, cre]
Maintainer: Matt Saenz <mattsaenz165@gmail.com>
Diff between cpsR versions 0.4.4 dated 2021-10-27 and 0.4.5 dated 2021-11-22
DESCRIPTION | 9 +++--- MD5 | 12 ++++---- NEWS.md | 4 ++ R/get_data.R | 11 ++++---- README.md | 74 +++++++++++++++++++++++++++++++++++++++++++------------ man/get_asec.Rd | 8 ++--- man/get_basic.Rd | 8 ++--- 7 files changed, 88 insertions(+), 38 deletions(-)
Title: Speedy Word Embedding Association Test and Extras Using R
Description: Conduct various tests for evaluating implicit biases in word embeddings: Word Embedding Association Test (Caliskan et al., 2017), <doi:10.1126/science.aal4230>, Relative Norm Distance (Garg et al., 2018), <doi:10.1073/pnas.1720347115>, Mean Average Cosine Similarity (Mazini et al., 2019) <arXiv:1904.04047>, SemAxis (An et al., 2018) <arXiv:1806.05521>, and Relative Negative Sentiment Bias (Sweeney & Najafian, 2019) <doi:10.18653/v1/P19-1162>.
Author: Chung-hong Chan [aut, cre] (<https://orcid.org/0000-0002-6232-7530>)
Maintainer: Chung-hong Chan <chainsawtiney@gmail.com>
Diff between sweater versions 0.1.0 dated 2021-11-19 and 0.1.1 dated 2021-11-22
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/rnsb.R | 2 +- R/semaxis.R | 2 +- README.md | 27 +++++++++++++++++---------- man/rnsb.Rd | 2 +- 6 files changed, 29 insertions(+), 22 deletions(-)
Title: Easy to Make (Lazy) Tables
Description: Constructs tables of counts and proportions out of data sets. It has simplified syntax appealing for novice and even for advanced user under time pressure. It is particularly suitable for exploratory data analysis or presentation to single out most appropriate pieces of tabulated information. The other important feature is possibility to insert tables to Excel and Word documents. This version also features capacity of log-linear and power analyses (original by Oleksandr Ocheredko <doi:10.35566/isdsa2019c5>) for tabulated data with GSL.
Author: Ocheredko Oleksandr
Maintainer: Ocheredko Oleksandr <Ocheredko@yahoo.com>
Diff between ltable versions 1.0 dated 2018-08-13 and 2.0.1 dated 2021-11-22
DESCRIPTION | 22 +++-- MD5 | 33 +++++++- NAMESPACE | 25 +++++- R/Plot.R |only R/PowerPoisson.R |only R/Print.R |only R/RcppExports.R |only R/tableToData.R |only R/table_f.R | 153 +++++++++++++++++++++-------------------- cleanup |only configure |only configure.ac |only data/tdata.rda |only inst |only man/ltable-package.Rd | 109 ++++++++++++----------------- man/plot,powerClass-method.Rd |only man/powerClass-class.Rd |only man/powerpoisson.Rd |only man/print,powerClass-method.Rd |only man/tableToData.Rd |only man/table_f.Rd | 111 +++++++++++++---------------- man/tdata.Rd |only man/z[,powerClass-method.Rd |only man/z[_-,powerClass-method.Rd |only src |only 25 files changed, 238 insertions(+), 215 deletions(-)
Title: Minimization Tool for Pharmacokinetic-Pharmacodynamic Data
Analysis
Description: This is a set of minimization tools (maximum likelihood estimation and least square fitting) to solve examples in the Johan Gabrielsson and Dan Weiner's book "Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications" 5th ed. (ISBN:9198299107). Examples include linear and nonlinear compartmental model, turn-over model, single or multiple dosing bolus/infusion/oral models, allometry, toxicokinetics, reversible metabolism, in-vitro/in-vivo extrapolation, enterohepatic circulation, metabolite modeling, Emax model, inhibitory model, tolerance model, oscillating response model, enantiomer interaction model, effect compartment model, drug-drug interaction model, receptor occupancy model, and rebound phenomena model.
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between wnl versions 0.6.3 dated 2021-09-06 and 0.6.4 dated 2021-11-22
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NAMESPACE | 2 +- R/dx.R | 8 +++++--- R/nlr.R | 10 +++++----- R/pComp.R | 2 +- inst/NEWS.Rd | 6 ++++++ inst/doc/wnl-manual.pdf |binary 8 files changed, 28 insertions(+), 20 deletions(-)
Title: Calculates the Minimum Sample Size Required for Developing a
Multivariable Prediction Model
Description: Computes the minimum sample size required for the development of a new multivariable prediction model using the criteria proposed by Riley et al. (2018) <doi: 10.1002/sim.7992>. pmsampsize can be used to calculate the minimum sample size for the development of models with continuous, binary or survival (time-to-event) outcomes. Riley et al. (2018) <doi: 10.1002/sim.7992> lay out a series of criteria the sample size should meet. These aim to minimise the overfitting and to ensure precise estimation of key parameters in the prediction model.
Author: Joie Ensor [aut, cre],
Emma C. Martin [aut],
Richard D. Riley [aut]
Maintainer: Joie Ensor <j.ensor@keele.ac.uk>
Diff between pmsampsize versions 1.1.0 dated 2021-06-25 and 1.1.1 dated 2021-11-22
DESCRIPTION | 10 ++++---- MD5 | 12 +++++----- NEWS.md | 7 +++++ R/pmsampsize_bin.R | 17 ++++++++------ R/pmsampsize_surv.R | 41 ++++++++++++++++++---------------- tests/testthat/test_bin.R | 20 ++++++++-------- tests/testthat/test_surv.R | 54 ++++++++++++++++++++++----------------------- 7 files changed, 86 insertions(+), 75 deletions(-)
Title: Bayesian Estimation of Intervention Effects
Description: An implementation of intervention effect estimation for DAGs (directed acyclic graphs) learned from binary or continuous data. First, parameters are estimated or sampled for the DAG and then interventions on each node (variable) are propagated through the network (do-calculus). Both exact computation (for continuous data or for binary data up to around 20 variables) and Monte Carlo schemes (for larger binary networks) are implemented.
Author: Jack Kuipers [aut,cre] and Giusi Moffa [aut]
Maintainer: Jack Kuipers <jack.kuipers@bsse.ethz.ch>
Diff between Bestie versions 0.1.2 dated 2021-02-26 and 0.1.3 dated 2021-11-22
DESCRIPTION | 11 +- MD5 | 14 +-- R/interventionest.R | 62 +++++++++++---- R/interventionestMC.R | 13 ++- R/posteriorparameters.R | 191 +++++++++++++++++++++++++++++++++++------------ man/DAGintervention.Rd | 9 +- man/DAGinterventionMC.Rd | 7 - src/RcppExports.cpp | 5 + 8 files changed, 226 insertions(+), 86 deletions(-)
Title: Business Analytics using R and Shiny
Description: A platform-independent browser-based interface for business
analytics in R, based on the shiny package. The application combines the
functionality of 'radiant.data', 'radiant.design', 'radiant.basics',
'radiant.model', and 'radiant.multivariate'.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant versions 1.4.0 dated 2021-06-08 and 1.4.1 dated 2021-11-22
DESCRIPTION | 16 ++++++++-------- MD5 | 10 +++++----- README.md | 3 ++- build/vignette.rds |binary inst/app/ui.R | 24 +++++++++++++----------- inst/doc/programming.html | 10 +++++----- 6 files changed, 33 insertions(+), 30 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 2.8-5 dated 2021-10-22 and 2.8-6 dated 2021-11-22
DESCRIPTION | 8 ++-- MD5 | 14 ++++---- R/calendarPlot.R | 4 ++ R/cutData.R | 2 - R/importAURN.R | 92 ++++++++++++++++++++++++++++++++++++++++++++++++++++-- R/importUKAQ.R | 36 +++++++++++++++++---- R/zzz.R | 3 + man/importAURN.Rd | 14 +++++++- 8 files changed, 149 insertions(+), 24 deletions(-)
Title: Tools for Data Diagnosis, Exploration, Transformation
Description: A collection of tools that support data diagnosis, exploration, and transformation.
Data diagnostics provides information and visualization of missing values and outliers and
unique and negative values to help you understand the distribution and quality of your data.
Data exploration provides information and visualization of the descriptive statistics of
univariate variables, normality tests and outliers, correlation of two variables, and
relationship between target variable and predictor. Data transformation supports binning
for categorizing continuous variables, imputates missing values and outliers, resolving skewness.
And it creates automated reports that support these three tasks.
Author: Choonghyun Ryu [aut, cre]
Maintainer: Choonghyun Ryu <choonghyun.ryu@gmail.com>
Diff between dlookr versions 0.5.1 dated 2021-09-02 and 0.5.2 dated 2021-11-22
dlookr-0.5.1/dlookr/man/import_liberation.Rd |only dlookr-0.5.2/dlookr/DESCRIPTION | 19 dlookr-0.5.2/dlookr/MD5 | 212 ++-- dlookr-0.5.2/dlookr/NAMESPACE | 9 dlookr-0.5.2/dlookr/NEWS | 90 ++ dlookr-0.5.2/dlookr/R/EDA.R | 28 dlookr-0.5.2/dlookr/R/aggregate.R | 207 +++- dlookr-0.5.2/dlookr/R/binning.R | 115 +- dlookr-0.5.2/dlookr/R/combination.R | 8 dlookr-0.5.2/dlookr/R/compare.R | 61 - dlookr-0.5.2/dlookr/R/correlate.R | 85 + dlookr-0.5.2/dlookr/R/diagnose.R | 161 ++- dlookr-0.5.2/dlookr/R/discribe.R | 18 dlookr-0.5.2/dlookr/R/dlookr.R | 123 -- dlookr-0.5.2/dlookr/R/graphics.R | 65 - dlookr-0.5.2/dlookr/R/html_diagnose.R | 41 dlookr-0.5.2/dlookr/R/html_eda.R | 320 ++++--- dlookr-0.5.2/dlookr/R/html_transformation.R | 83 + dlookr-0.5.2/dlookr/R/imputation.R | 50 - dlookr-0.5.2/dlookr/R/missing.R | 69 + dlookr-0.5.2/dlookr/R/normality.R | 144 +-- dlookr-0.5.2/dlookr/R/overview.R | 24 dlookr-0.5.2/dlookr/R/report.R | 60 + dlookr-0.5.2/dlookr/R/stats.R | 27 dlookr-0.5.2/dlookr/R/target_by.R | 38 dlookr-0.5.2/dlookr/R/tbl_dbi.R | 426 +++++----- dlookr-0.5.2/dlookr/R/transform.R | 52 - dlookr-0.5.2/dlookr/R/univariate.R | 64 + dlookr-0.5.2/dlookr/R/zzz.R |only dlookr-0.5.2/dlookr/inst/doc/EDA.html | 18 dlookr-0.5.2/dlookr/inst/doc/diagonosis.html | 12 dlookr-0.5.2/dlookr/inst/doc/introduce.Rmd | 2 dlookr-0.5.2/dlookr/inst/doc/introduce.html | 8 dlookr-0.5.2/dlookr/inst/doc/transformation.html | 53 - dlookr-0.5.2/dlookr/inst/fonts/NanumSquare |only dlookr-0.5.2/dlookr/inst/report/diagnosis_paged_temp.Rmd | 10 dlookr-0.5.2/dlookr/inst/report/diagnosis_temp.Rmd | 11 dlookr-0.5.2/dlookr/inst/report/eda_paged_temp.Rmd | 24 dlookr-0.5.2/dlookr/inst/report/eda_temp.Rmd | 21 dlookr-0.5.2/dlookr/inst/report/transformation_paged_temp.Rmd | 5 dlookr-0.5.2/dlookr/inst/report/transformation_temp.Rmd | 17 dlookr-0.5.2/dlookr/man/binning.Rd | 38 dlookr-0.5.2/dlookr/man/binning_by.Rd | 4 dlookr-0.5.2/dlookr/man/correlate.data.frame.Rd | 18 dlookr-0.5.2/dlookr/man/correlate.tbl_dbi.Rd | 30 dlookr-0.5.2/dlookr/man/describe.data.frame.Rd | 18 dlookr-0.5.2/dlookr/man/describe.tbl_dbi.Rd | 10 dlookr-0.5.2/dlookr/man/diagnose.data.frame.Rd | 18 dlookr-0.5.2/dlookr/man/diagnose.tbl_dbi.Rd | 24 dlookr-0.5.2/dlookr/man/diagnose_category.data.frame.Rd | 4 dlookr-0.5.2/dlookr/man/diagnose_category.tbl_dbi.Rd | 52 - dlookr-0.5.2/dlookr/man/diagnose_numeric.data.frame.Rd | 12 dlookr-0.5.2/dlookr/man/diagnose_numeric.tbl_dbi.Rd | 26 dlookr-0.5.2/dlookr/man/diagnose_outlier.data.frame.Rd | 22 dlookr-0.5.2/dlookr/man/diagnose_outlier.tbl_dbi.Rd | 26 dlookr-0.5.2/dlookr/man/diagnose_paged_report.data.frame.Rd | 8 dlookr-0.5.2/dlookr/man/diagnose_report.data.frame.Rd | 6 dlookr-0.5.2/dlookr/man/diagnose_report.tbl_dbi.Rd | 30 dlookr-0.5.2/dlookr/man/diagnose_sparese.data.frame.Rd | 8 dlookr-0.5.2/dlookr/man/diagnose_web_report.data.frame.Rd | 8 dlookr-0.5.2/dlookr/man/dlookr-package.Rd | 2 dlookr-0.5.2/dlookr/man/eda_paged_report.data.frame.Rd | 8 dlookr-0.5.2/dlookr/man/eda_report.data.frame.Rd | 26 dlookr-0.5.2/dlookr/man/eda_report.tbl_dbi.Rd | 78 - dlookr-0.5.2/dlookr/man/eda_web_report.data.frame.Rd | 8 dlookr-0.5.2/dlookr/man/get_column_info.Rd | 12 dlookr-0.5.2/dlookr/man/get_transform.Rd | 2 dlookr-0.5.2/dlookr/man/import_google_font.Rd |only dlookr-0.5.2/dlookr/man/imputate_na.Rd | 12 dlookr-0.5.2/dlookr/man/imputate_outlier.Rd | 4 dlookr-0.5.2/dlookr/man/normality.data.frame.Rd | 14 dlookr-0.5.2/dlookr/man/normality.tbl_dbi.Rd | 28 dlookr-0.5.2/dlookr/man/performance_bin.Rd | 6 dlookr-0.5.2/dlookr/man/plot.bins.Rd | 24 dlookr-0.5.2/dlookr/man/plot.compare_category.Rd | 25 dlookr-0.5.2/dlookr/man/plot.compare_numeric.Rd | 12 dlookr-0.5.2/dlookr/man/plot.imputation.Rd | 18 dlookr-0.5.2/dlookr/man/plot.optimal_bins.Rd | 9 dlookr-0.5.2/dlookr/man/plot.overview.Rd | 21 dlookr-0.5.2/dlookr/man/plot.performance_bin.Rd | 18 dlookr-0.5.2/dlookr/man/plot.relate.Rd | 9 dlookr-0.5.2/dlookr/man/plot.transform.Rd | 20 dlookr-0.5.2/dlookr/man/plot.univar_category.Rd | 17 dlookr-0.5.2/dlookr/man/plot.univar_numeric.Rd | 9 dlookr-0.5.2/dlookr/man/plot_bar_category.data.frame.Rd | 13 dlookr-0.5.2/dlookr/man/plot_box_numeric.data.frame.Rd | 13 dlookr-0.5.2/dlookr/man/plot_correlate.data.frame.Rd | 46 - dlookr-0.5.2/dlookr/man/plot_correlate.tbl_dbi.Rd | 40 dlookr-0.5.2/dlookr/man/plot_hist_numeric.data.frame.Rd | 13 dlookr-0.5.2/dlookr/man/plot_na_hclust.Rd | 14 dlookr-0.5.2/dlookr/man/plot_na_intersect.Rd | 12 dlookr-0.5.2/dlookr/man/plot_na_pareto.Rd | 23 dlookr-0.5.2/dlookr/man/plot_normality.data.frame.Rd | 31 dlookr-0.5.2/dlookr/man/plot_normality.tbl_dbi.Rd | 38 dlookr-0.5.2/dlookr/man/plot_outlier.data.frame.Rd | 17 dlookr-0.5.2/dlookr/man/plot_outlier.target_df.Rd | 13 dlookr-0.5.2/dlookr/man/plot_outlier.tbl_dbi.Rd | 10 dlookr-0.5.2/dlookr/man/plot_qq_numeric.data.frame.Rd | 13 dlookr-0.5.2/dlookr/man/summary.bins.Rd | 2 dlookr-0.5.2/dlookr/man/summary.imputation.Rd | 6 dlookr-0.5.2/dlookr/man/summary.performance_bin.Rd | 6 dlookr-0.5.2/dlookr/man/summary.transform.Rd | 6 dlookr-0.5.2/dlookr/man/summary.univar_numeric.Rd | 2 dlookr-0.5.2/dlookr/man/target_by.tbl_dbi.Rd | 18 dlookr-0.5.2/dlookr/man/transform.Rd | 6 dlookr-0.5.2/dlookr/man/transformation_paged_report.Rd | 8 dlookr-0.5.2/dlookr/man/transformation_report.Rd | 12 dlookr-0.5.2/dlookr/man/transformation_web_report.Rd | 8 dlookr-0.5.2/dlookr/vignettes/introduce.Rmd | 2 109 files changed, 2332 insertions(+), 1564 deletions(-)
Title: Bayesian A/B Testing
Description: Provides functions for Bayesian A/B testing including prior elicitation
options based on Kass and Vaidyanathan (1992) <doi:10.1111/j.2517-6161.1992.tb01868.x>.
Gronau, Raj K. N., & Wagenmakers (2021) <doi:10.18637/jss.v100.i17>.
Author: Quentin F. Gronau [aut, cre],
Akash Raj [ctb],
Eric-Jan Wagenmakers [ths]
Maintainer: Quentin F. Gronau <Quentin.F.Gronau@gmail.com>
Diff between abtest versions 0.2.2 dated 2020-11-12 and 1.0.1 dated 2021-11-22
DESCRIPTION | 11 ++++++----- MD5 | 32 +++++++++++++++++--------------- NEWS | 8 ++++++++ R/ab_test.R | 6 +++++- R/elicit_prior.R | 7 ++++++- build |only inst |only man/ab_test.Rd | 19 +++++++++++++++---- man/dprior.Rd | 9 +++++++-- man/elicit_prior.Rd | 17 ++++++++++++++--- man/plot_posterior.Rd | 13 +++++++++++-- man/plot_prior.Rd | 9 +++++++-- man/plot_robustness.Rd | 14 +++++++++++--- man/pprior.Rd | 8 ++++++-- man/qprior.Rd | 8 ++++++-- man/seqdata.Rd | 4 +++- man/simulate_priors.Rd | 7 +++++-- src/RcppExports.cpp | 5 +++++ 18 files changed, 132 insertions(+), 45 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-02 0.0.5
2020-01-26 0.0.4
2019-12-03 0.0.3
2019-11-22 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-24 0.3-0
2013-06-21 0.2.5
2013-03-18 0.2.1
2013-03-18 0.2.1
Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that
the user is probably willing to make: 'import()' and 'export()' determine
the data structure from the file extension, reasonable defaults are used for
data import and export (e.g., 'stringsAsFactors=FALSE'), web-based import is
natively supported (including from SSL/HTTPS), compressed files can be read
directly without explicit decompression, and fast import packages are used where
appropriate. An additional convenience function, 'convert()', provides a simple
method for converting between file types.
Author: Jason Becker [ctb],
Chung-hong Chan [aut] (<https://orcid.org/0000-0002-6232-7530>),
Geoffrey CH Chan [ctb],
Thomas J. Leeper [aut, cre] (<https://orcid.org/0000-0003-4097-6326>),
Christopher Gandrud [ctb],
Andrew MacDonald [ctb],
Ista Zahn [ctb],
Stanislaus Stadlmann [ctb],
Ruaridh Williamson [ctb],
Patrick Kennedy [ctb],
Ryan Price [ctb],
Trevor L Davis [ctb],
Nathan Day [ctb],
Bill Denney [ctb] (<https://orcid.org/0000-0002-5759-428X>),
Alex Bokov [ctb] (<https://orcid.org/0000-0002-0511-9815>)
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between rio versions 0.5.27 dated 2021-06-21 and 0.5.29 dated 2021-11-22
DESCRIPTION | 10 ++--- MD5 | 52 +++++++++++++++--------------- NEWS.md | 7 +++- R/characterize.R | 6 +-- R/convert.R | 23 ++++++------- R/export.R | 62 ++++++++++++++++++++---------------- R/export_list.R | 18 +++++----- R/export_methods.R | 4 +- R/import.R | 28 ++++++++-------- R/import_list.R | 24 ++++++++----- R/import_methods.R | 2 - R/is_file_text.R | 12 +++--- R/rio.R | 18 +++++----- inst/doc/rio.html | 4 +- man/characterize.Rd | 6 +-- man/convert.Rd | 23 ++++++------- man/export.Rd | 60 +++++++++++++++++++--------------- man/export_list.Rd | 18 +++++----- man/import.Rd | 28 ++++++++-------- man/import_list.Rd | 24 ++++++++----- man/is_file_text.Rd | 12 +++--- man/rio.Rd | 18 +++++----- tests/testthat/test_format_fwf.R | 2 - tests/testthat/test_format_matlab.R | 6 ++- tests/testthat/test_format_pzfx.R | 1 tests/testthat/test_format_xml.R | 3 + tests/testthat/test_is_file_text.R | 6 ++- 27 files changed, 260 insertions(+), 217 deletions(-)
Title: R Interface to CPLEX
Description: R interface to CPLEX solvers for linear, quadratic, and (linear and quadratic) mixed integer programs. Support for quadratically constrained programming is available. See the file "INSTALL" for details on how to install the Rcplex package in Linux/Unix-like and Windows systems. Support for sparse matrices is provided by an S3-style class "simple_triplet_matrix" from package slam and by objects from the Matrix package class hierarchy.
Author: Hector Corrada Bravo [aut],
Kurt Hornik [ctb],
Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl <Stefan.Theussl@R-project.org>
Diff between Rcplex versions 0.3-3 dated 2016-06-13 and 0.3-4 dated 2021-11-22
DESCRIPTION | 10 +++++----- MD5 | 13 +++++++------ NAMESPACE | 2 +- R/Rcplex.R | 4 ++-- configure.ac | 5 +++-- src/Rcplex.c | 3 ++- src/Rcplex_QCP.c | 3 ++- src/init.c |only 8 files changed, 22 insertions(+), 18 deletions(-)
Title: Shiny User Interface for 'monobin' Package
Description: This is an add-on package to the 'monobin' package that simplifies its use. It provides shiny-based user interface (UI)
that is especially handy for less experienced 'R' users as well as for those who intend to perform quick scanning
of numeric risk factors when building credit rating models. The additional functions implemented in
'monobinShiny' that do no exist in 'monobin' package are: descriptive statistics, special case and outliers imputation.
The function descriptive statistics is exported and can be used in 'R' sessions independently from the user interface,
while special case and outlier imputation functions are written to be used with shiny UI.
Author: Andrija Djurovic [aut, cre]
Maintainer: Andrija Djurovic <djandrija@gmail.com>
Diff between monobinShiny versions 0.0.9 dated 2021-08-23 and 0.1.0 dated 2021-11-22
DESCRIPTION | 6 +- MD5 | 24 ++++++----- NAMESPACE | 1 NEWS.md |only R/03_MONOBIN.R | 4 - R/99_DESC_STAT.R | 3 - R/99_HELPERS.R | 96 ++++++++++++++++++++++++++++++++++++++++----- inst/monobinShiny/global.R | 2 man/cum.ui.Rd | 3 - man/iso.ui.Rd | 3 - man/mdt.ui.Rd |only man/ndr.sts.ui.Rd | 3 - man/pct.ui.Rd | 3 - man/woe.ui.Rd | 3 - 14 files changed, 118 insertions(+), 33 deletions(-)
Title: Monotonic Binning for Credit Rating Models
Description: Performs monotonic binning of numeric risk factor in credit rating models (PD, LGD, EAD)
development. All functions handle both binary and continuous target variable.
Functions that use isotonic regression in the first stage of binning process have an additional
feature for correction of minimum percentage of observations and minimum target rate per bin.
Additionally, monotonic trend can be identified based on raw data or, if known in advance,
forced by functions' argument. Missing values and other possible special values are treated
separately from so-called complete cases.
Author: Andrija Djurovic [aut, cre]
Maintainer: Andrija Djurovic <djandrija@gmail.com>
Diff between monobin versions 0.2.0 dated 2021-10-21 and 0.2.1 dated 2021-11-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 9 +++++++-- R/07_MDT_BINNING.R | 9 +++++++-- README.md | 4 ++-- 5 files changed, 23 insertions(+), 13 deletions(-)
Title: Generate Mind Maps with R
Description: Convert Markdown ('.md') or R Markdown ('.Rmd') texts, R scripts, and directory structures, into mind map widgets or files ('.mm'), and vice versa. "FreeMind" mind map ('.mm') files can be opened by or imported to common mindmap software such as 'FreeMind' (<http://freemind.sourceforge.net/wiki/index.php/Main_Page>).
Author: Peng Zhao
Maintainer: Peng Zhao <pzhao@pzhao.net>
Diff between mindr versions 1.3.1 dated 2021-11-19 and 1.3.2 dated 2021-11-22
DESCRIPTION | 8 ++--- MD5 | 12 +++---- R/individual.R | 6 +++ R/internal.R | 2 - R/wrapper.R | 53 +++++++++++++++++++++++++++-------- man/markmapOption.Rd | 2 - man/mm.Rd | 77 ++++++++++++++++++++++++++++++++------------------- 7 files changed, 107 insertions(+), 53 deletions(-)
Title: Bias and Precision Plots
Description: Implementation of the methodology from the paper entitled
"Effective plots to assess bias and precision in method comparison studies"
published in Statistical Methods in Medical Research, P. Taffé (2018) <doi:10.1177/0962280218759693>.
Author: Mingkai Peng, Patrick Taffé, Tyler Williamson
Maintainer: Patrick Taffé <patrick.taffe@unisante.ch>
Diff between MethodCompare versions 0.1.0 dated 2016-10-11 and 0.1.1 dated 2021-11-22
MethodCompare-0.1.0/MethodCompare/R/Compare_plot.R |only MethodCompare-0.1.1/MethodCompare/DESCRIPTION | 21 - MethodCompare-0.1.1/MethodCompare/MD5 | 33 +- MethodCompare-0.1.1/MethodCompare/NAMESPACE | 55 +-- MethodCompare-0.1.1/MethodCompare/R/bias_plot.R | 126 +++----- MethodCompare-0.1.1/MethodCompare/R/bland_altman_plot.R | 168 ++++------- MethodCompare-0.1.1/MethodCompare/R/compare_plot.R |only MethodCompare-0.1.1/MethodCompare/R/data1.R | 86 ----- MethodCompare-0.1.1/MethodCompare/R/measure_compare.R | 189 +++++-------- MethodCompare-0.1.1/MethodCompare/R/precision_plot.R | 79 +---- MethodCompare-0.1.1/MethodCompare/man/MethodCompare.Rd |only MethodCompare-0.1.1/MethodCompare/man/bias_plot.Rd | 56 +-- MethodCompare-0.1.1/MethodCompare/man/bland_altman_plot.Rd | 16 - MethodCompare-0.1.1/MethodCompare/man/compare_plot.Rd | 8 MethodCompare-0.1.1/MethodCompare/man/data1.Rd | 13 MethodCompare-0.1.1/MethodCompare/man/data2.Rd | 9 MethodCompare-0.1.1/MethodCompare/man/data3.Rd | 9 MethodCompare-0.1.1/MethodCompare/man/measure_compare.Rd | 30 +- MethodCompare-0.1.1/MethodCompare/man/precision_plot.Rd | 15 - 19 files changed, 348 insertions(+), 565 deletions(-)
Title: Provides Access to Git Repositories
Description: Interface to the 'libgit2' library, which is a pure C
implementation of the 'Git' core methods. Provides access to 'Git'
repositories to extract data and running some basic 'Git'
commands.
Author: See AUTHORS file.
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between git2r versions 0.28.0 dated 2021-01-10 and 0.29.0 dated 2021-11-22
git2r-0.28.0/git2r/NEWS |only git2r-0.28.0/git2r/src/libgit2/include/git2/sys/time.h |only git2r-0.28.0/git2r/src/libgit2/src/buf_text.c |only git2r-0.28.0/git2r/src/libgit2/src/buf_text.h |only git2r-0.28.0/git2r/src/libgit2/src/fileops.c |only git2r-0.28.0/git2r/src/libgit2/src/fileops.h |only git2r-0.28.0/git2r/src/libgit2/src/fnmatch.c |only git2r-0.28.0/git2r/src/libgit2/src/fnmatch.h |only git2r-0.28.0/git2r/src/libgit2/src/global.c |only git2r-0.28.0/git2r/src/libgit2/src/global.h |only git2r-0.28.0/git2r/src/libgit2/src/hash/hash_collisiondetect.h |only git2r-0.28.0/git2r/src/libgit2/src/hash/hash_openssl.h |only git2r-0.28.0/git2r/src/libgit2/src/hash/sha1dc |only git2r-0.28.0/git2r/src/libgit2/src/refdb_fs.h |only git2r-0.28.0/git2r/src/libgit2/src/settings.c |only git2r-0.28.0/git2r/src/libgit2/src/sha1_lookup.c |only git2r-0.28.0/git2r/src/libgit2/src/sha1_lookup.h |only git2r-0.28.0/git2r/src/libgit2/src/stdalloc.c |only git2r-0.28.0/git2r/src/libgit2/src/stdalloc.h |only git2r-0.28.0/git2r/src/libgit2/src/thread-utils.c |only git2r-0.28.0/git2r/src/libgit2/src/thread-utils.h |only git2r-0.28.0/git2r/src/libgit2/src/transports/cred.c |only git2r-0.28.0/git2r/src/libgit2/src/transports/cred.h |only git2r-0.28.0/git2r/src/libgit2/src/transports/cred_helpers.c |only git2r-0.29.0/git2r/DESCRIPTION | 9 git2r-0.29.0/git2r/MD5 | 662 +- git2r-0.29.0/git2r/NEWS.md |only git2r-0.29.0/git2r/R/repository.R | 9 git2r-0.29.0/git2r/cleanup | 5 git2r-0.29.0/git2r/configure | 38 git2r-0.29.0/git2r/configure.ac | 24 git2r-0.29.0/git2r/man/init.Rd | 6 git2r-0.29.0/git2r/src/Makevars.win | 2 git2r-0.29.0/git2r/src/Makevars_libgit2.in | 66 git2r-0.29.0/git2r/src/git2r.c | 2 git2r-0.29.0/git2r/src/git2r_repository.c | 19 git2r-0.29.0/git2r/src/git2r_repository.h | 2 git2r-0.29.0/git2r/src/git2r_revwalk.c | 25 git2r-0.29.0/git2r/src/libgit2/deps/http-parser/http_parser.c | 17 git2r-0.29.0/git2r/src/libgit2/include/git2.h | 3 git2r-0.29.0/git2r/src/libgit2/include/git2/annotated_commit.h | 2 git2r-0.29.0/git2r/src/libgit2/include/git2/apply.h | 26 git2r-0.29.0/git2r/src/libgit2/include/git2/attr.h | 133 git2r-0.29.0/git2r/src/libgit2/include/git2/blame.h | 141 git2r-0.29.0/git2r/src/libgit2/include/git2/blob.h | 94 git2r-0.29.0/git2r/src/libgit2/include/git2/branch.h | 158 git2r-0.29.0/git2r/src/libgit2/include/git2/buffer.h | 34 git2r-0.29.0/git2r/src/libgit2/include/git2/cert.h |only git2r-0.29.0/git2r/src/libgit2/include/git2/checkout.h | 100 git2r-0.29.0/git2r/src/libgit2/include/git2/cherrypick.h | 6 git2r-0.29.0/git2r/src/libgit2/include/git2/clone.h | 6 git2r-0.29.0/git2r/src/libgit2/include/git2/commit.h | 40 git2r-0.29.0/git2r/src/libgit2/include/git2/common.h | 76 git2r-0.29.0/git2r/src/libgit2/include/git2/config.h | 26 git2r-0.29.0/git2r/src/libgit2/include/git2/cred_helpers.h | 46 git2r-0.29.0/git2r/src/libgit2/include/git2/credential.h |only git2r-0.29.0/git2r/src/libgit2/include/git2/credential_helpers.h |only git2r-0.29.0/git2r/src/libgit2/include/git2/deprecated.h | 692 ++ git2r-0.29.0/git2r/src/libgit2/include/git2/describe.h | 8 git2r-0.29.0/git2r/src/libgit2/include/git2/diff.h | 169 git2r-0.29.0/git2r/src/libgit2/include/git2/email.h |only git2r-0.29.0/git2r/src/libgit2/include/git2/errors.h | 19 git2r-0.29.0/git2r/src/libgit2/include/git2/filter.h | 88 git2r-0.29.0/git2r/src/libgit2/include/git2/graph.h | 22 git2r-0.29.0/git2r/src/libgit2/include/git2/index.h | 12 git2r-0.29.0/git2r/src/libgit2/include/git2/indexer.h | 53 git2r-0.29.0/git2r/src/libgit2/include/git2/merge.h | 16 git2r-0.29.0/git2r/src/libgit2/include/git2/net.h | 5 git2r-0.29.0/git2r/src/libgit2/include/git2/notes.h | 4 git2r-0.29.0/git2r/src/libgit2/include/git2/object.h | 16 git2r-0.29.0/git2r/src/libgit2/include/git2/odb.h | 69 git2r-0.29.0/git2r/src/libgit2/include/git2/odb_backend.h | 9 git2r-0.29.0/git2r/src/libgit2/include/git2/oid.h | 17 git2r-0.29.0/git2r/src/libgit2/include/git2/oidarray.h | 13 git2r-0.29.0/git2r/src/libgit2/include/git2/pack.h | 15 git2r-0.29.0/git2r/src/libgit2/include/git2/patch.h | 8 git2r-0.29.0/git2r/src/libgit2/include/git2/proxy.h | 10 git2r-0.29.0/git2r/src/libgit2/include/git2/rebase.h | 72 git2r-0.29.0/git2r/src/libgit2/include/git2/refs.h | 33 git2r-0.29.0/git2r/src/libgit2/include/git2/remote.h | 126 git2r-0.29.0/git2r/src/libgit2/include/git2/repository.h | 204 git2r-0.29.0/git2r/src/libgit2/include/git2/revert.h | 2 git2r-0.29.0/git2r/src/libgit2/include/git2/revparse.h | 10 git2r-0.29.0/git2r/src/libgit2/include/git2/revwalk.h | 10 git2r-0.29.0/git2r/src/libgit2/include/git2/stash.h | 10 git2r-0.29.0/git2r/src/libgit2/include/git2/status.h | 201 git2r-0.29.0/git2r/src/libgit2/include/git2/strarray.h | 16 git2r-0.29.0/git2r/src/libgit2/include/git2/submodule.h | 32 git2r-0.29.0/git2r/src/libgit2/include/git2/sys/alloc.h | 18 git2r-0.29.0/git2r/src/libgit2/include/git2/sys/commit_graph.h |only git2r-0.29.0/git2r/src/libgit2/include/git2/sys/cred.h |only git2r-0.29.0/git2r/src/libgit2/include/git2/sys/credential.h |only git2r-0.29.0/git2r/src/libgit2/include/git2/sys/email.h |only git2r-0.29.0/git2r/src/libgit2/include/git2/sys/filter.h | 77 git2r-0.29.0/git2r/src/libgit2/include/git2/sys/index.h | 6 git2r-0.29.0/git2r/src/libgit2/include/git2/sys/mempack.h | 3 git2r-0.29.0/git2r/src/libgit2/include/git2/sys/merge.h | 2 git2r-0.29.0/git2r/src/libgit2/include/git2/sys/midx.h |only git2r-0.29.0/git2r/src/libgit2/include/git2/sys/odb_backend.h | 59 git2r-0.29.0/git2r/src/libgit2/include/git2/sys/refdb_backend.h | 185 git2r-0.29.0/git2r/src/libgit2/include/git2/sys/repository.h | 23 git2r-0.29.0/git2r/src/libgit2/include/git2/sys/transport.h | 9 git2r-0.29.0/git2r/src/libgit2/include/git2/tag.h | 25 git2r-0.29.0/git2r/src/libgit2/include/git2/trace.h | 4 git2r-0.29.0/git2r/src/libgit2/include/git2/transport.h | 351 - git2r-0.29.0/git2r/src/libgit2/include/git2/tree.h | 24 git2r-0.29.0/git2r/src/libgit2/include/git2/types.h | 102 git2r-0.29.0/git2r/src/libgit2/include/git2/version.h | 10 git2r-0.29.0/git2r/src/libgit2/include/git2/worktree.h | 11 git2r-0.29.0/git2r/src/libgit2/src/alloc.c | 43 git2r-0.29.0/git2r/src/libgit2/src/allocators |only git2r-0.29.0/git2r/src/libgit2/src/annotated_commit.c | 30 git2r-0.29.0/git2r/src/libgit2/src/apply.c | 75 git2r-0.29.0/git2r/src/libgit2/src/array.h | 22 git2r-0.29.0/git2r/src/libgit2/src/assert_safe.h |only git2r-0.29.0/git2r/src/libgit2/src/attr.c | 322 - git2r-0.29.0/git2r/src/libgit2/src/attr_file.c | 395 + git2r-0.29.0/git2r/src/libgit2/src/attr_file.h | 59 git2r-0.29.0/git2r/src/libgit2/src/attrcache.c | 170 git2r-0.29.0/git2r/src/libgit2/src/attrcache.h | 12 git2r-0.29.0/git2r/src/libgit2/src/blame.c | 73 git2r-0.29.0/git2r/src/libgit2/src/blame.h | 2 git2r-0.29.0/git2r/src/libgit2/src/blame_git.c | 39 git2r-0.29.0/git2r/src/libgit2/src/blob.c | 178 git2r-0.29.0/git2r/src/libgit2/src/blob.h | 4 git2r-0.29.0/git2r/src/libgit2/src/branch.c | 192 git2r-0.29.0/git2r/src/libgit2/src/buffer.c | 383 + git2r-0.29.0/git2r/src/libgit2/src/buffer.h | 157 git2r-0.29.0/git2r/src/libgit2/src/cache.c | 96 git2r-0.29.0/git2r/src/libgit2/src/cache.h | 16 git2r-0.29.0/git2r/src/libgit2/src/cc-compat.h | 23 git2r-0.29.0/git2r/src/libgit2/src/checkout.c | 246 git2r-0.29.0/git2r/src/libgit2/src/cherrypick.c | 18 git2r-0.29.0/git2r/src/libgit2/src/clone.c | 171 git2r-0.29.0/git2r/src/libgit2/src/clone.h | 4 git2r-0.29.0/git2r/src/libgit2/src/commit.c | 157 git2r-0.29.0/git2r/src/libgit2/src/commit.h | 6 git2r-0.29.0/git2r/src/libgit2/src/commit_graph.c |only git2r-0.29.0/git2r/src/libgit2/src/commit_graph.h |only git2r-0.29.0/git2r/src/libgit2/src/commit_list.c | 148 git2r-0.29.0/git2r/src/libgit2/src/commit_list.h | 6 git2r-0.29.0/git2r/src/libgit2/src/common.h | 106 git2r-0.29.0/git2r/src/libgit2/src/config.c | 135 git2r-0.29.0/git2r/src/libgit2/src/config.h | 13 git2r-0.29.0/git2r/src/libgit2/src/config_backend.h | 12 git2r-0.29.0/git2r/src/libgit2/src/config_cache.c | 93 git2r-0.29.0/git2r/src/libgit2/src/config_entries.c | 174 git2r-0.29.0/git2r/src/libgit2/src/config_entries.h | 1 git2r-0.29.0/git2r/src/libgit2/src/config_file.c | 736 +- git2r-0.29.0/git2r/src/libgit2/src/config_mem.c | 28 git2r-0.29.0/git2r/src/libgit2/src/config_parse.c | 94 git2r-0.29.0/git2r/src/libgit2/src/config_parse.h | 25 git2r-0.29.0/git2r/src/libgit2/src/config_snapshot.c |only git2r-0.29.0/git2r/src/libgit2/src/crlf.c | 50 git2r-0.29.0/git2r/src/libgit2/src/date.c | 7 git2r-0.29.0/git2r/src/libgit2/src/delta.c | 2 git2r-0.29.0/git2r/src/libgit2/src/describe.c | 58 git2r-0.29.0/git2r/src/libgit2/src/diff.c | 317 - git2r-0.29.0/git2r/src/libgit2/src/diff.h | 7 git2r-0.29.0/git2r/src/libgit2/src/diff_driver.c | 111 git2r-0.29.0/git2r/src/libgit2/src/diff_file.c | 34 git2r-0.29.0/git2r/src/libgit2/src/diff_file.h | 4 git2r-0.29.0/git2r/src/libgit2/src/diff_generate.c | 136 git2r-0.29.0/git2r/src/libgit2/src/diff_generate.h | 4 git2r-0.29.0/git2r/src/libgit2/src/diff_parse.c | 7 git2r-0.29.0/git2r/src/libgit2/src/diff_print.c | 180 git2r-0.29.0/git2r/src/libgit2/src/diff_stats.c | 37 git2r-0.29.0/git2r/src/libgit2/src/diff_tform.c | 48 git2r-0.29.0/git2r/src/libgit2/src/diff_xdiff.c | 6 git2r-0.29.0/git2r/src/libgit2/src/diff_xdiff.h | 2 git2r-0.29.0/git2r/src/libgit2/src/email.c |only git2r-0.29.0/git2r/src/libgit2/src/email.h |only git2r-0.29.0/git2r/src/libgit2/src/errors.c | 83 git2r-0.29.0/git2r/src/libgit2/src/errors.h |only git2r-0.29.0/git2r/src/libgit2/src/fetch.c | 18 git2r-0.29.0/git2r/src/libgit2/src/fetchhead.c | 30 git2r-0.29.0/git2r/src/libgit2/src/filebuf.c | 18 git2r-0.29.0/git2r/src/libgit2/src/filebuf.h | 2 git2r-0.29.0/git2r/src/libgit2/src/filter.c | 338 - git2r-0.29.0/git2r/src/libgit2/src/filter.h | 29 git2r-0.29.0/git2r/src/libgit2/src/futils.c |only git2r-0.29.0/git2r/src/libgit2/src/futils.h |only git2r-0.29.0/git2r/src/libgit2/src/graph.c | 73 git2r-0.29.0/git2r/src/libgit2/src/hash.c | 66 git2r-0.29.0/git2r/src/libgit2/src/hash.h | 42 git2r-0.29.0/git2r/src/libgit2/src/hash/sha1 |only git2r-0.29.0/git2r/src/libgit2/src/hash/sha1.h |only git2r-0.29.0/git2r/src/libgit2/src/hashsig.c | 35 git2r-0.29.0/git2r/src/libgit2/src/ident.c | 16 git2r-0.29.0/git2r/src/libgit2/src/idxmap.c | 142 git2r-0.29.0/git2r/src/libgit2/src/idxmap.h | 172 git2r-0.29.0/git2r/src/libgit2/src/ignore.c | 97 git2r-0.29.0/git2r/src/libgit2/src/index.c | 394 - git2r-0.29.0/git2r/src/libgit2/src/index.h | 4 git2r-0.29.0/git2r/src/libgit2/src/indexer.c | 273 - git2r-0.29.0/git2r/src/libgit2/src/integer.h | 96 git2r-0.29.0/git2r/src/libgit2/src/iterator.c | 124 git2r-0.29.0/git2r/src/libgit2/src/iterator.h | 18 git2r-0.29.0/git2r/src/libgit2/src/khash.h | 13 git2r-0.29.0/git2r/src/libgit2/src/libgit2.c |only git2r-0.29.0/git2r/src/libgit2/src/libgit2.h |only git2r-0.29.0/git2r/src/libgit2/src/mailmap.c | 33 git2r-0.29.0/git2r/src/libgit2/src/map.h | 8 git2r-0.29.0/git2r/src/libgit2/src/merge.c | 257 git2r-0.29.0/git2r/src/libgit2/src/merge.h | 7 git2r-0.29.0/git2r/src/libgit2/src/merge_driver.c | 40 git2r-0.29.0/git2r/src/libgit2/src/merge_file.c | 26 git2r-0.29.0/git2r/src/libgit2/src/message.c | 4 git2r-0.29.0/git2r/src/libgit2/src/midx.c |only git2r-0.29.0/git2r/src/libgit2/src/midx.h |only git2r-0.29.0/git2r/src/libgit2/src/mwindow.c | 346 - git2r-0.29.0/git2r/src/libgit2/src/mwindow.h | 14 git2r-0.29.0/git2r/src/libgit2/src/net.c |only git2r-0.29.0/git2r/src/libgit2/src/net.h |only git2r-0.29.0/git2r/src/libgit2/src/netops.c | 238 git2r-0.29.0/git2r/src/libgit2/src/netops.h | 42 git2r-0.29.0/git2r/src/libgit2/src/notes.c | 93 git2r-0.29.0/git2r/src/libgit2/src/object.c | 45 git2r-0.29.0/git2r/src/libgit2/src/object.h | 2 git2r-0.29.0/git2r/src/libgit2/src/odb.c | 419 + git2r-0.29.0/git2r/src/libgit2/src/odb.h | 23 git2r-0.29.0/git2r/src/libgit2/src/odb_loose.c | 77 git2r-0.29.0/git2r/src/libgit2/src/odb_mempack.c | 41 git2r-0.29.0/git2r/src/libgit2/src/odb_pack.c | 514 + git2r-0.29.0/git2r/src/libgit2/src/offmap.c | 98 git2r-0.29.0/git2r/src/libgit2/src/offmap.h | 136 git2r-0.29.0/git2r/src/libgit2/src/oid.c | 38 git2r-0.29.0/git2r/src/libgit2/src/oidarray.c | 11 git2r-0.29.0/git2r/src/libgit2/src/oidmap.c | 96 git2r-0.29.0/git2r/src/libgit2/src/oidmap.h | 124 git2r-0.29.0/git2r/src/libgit2/src/pack-objects.c | 209 git2r-0.29.0/git2r/src/libgit2/src/pack-objects.h | 2 git2r-0.29.0/git2r/src/libgit2/src/pack.c | 753 +- git2r-0.29.0/git2r/src/libgit2/src/pack.h | 82 git2r-0.29.0/git2r/src/libgit2/src/parse.c | 10 git2r-0.29.0/git2r/src/libgit2/src/parse.h | 6 git2r-0.29.0/git2r/src/libgit2/src/patch.c | 23 git2r-0.29.0/git2r/src/libgit2/src/patch_generate.c | 10 git2r-0.29.0/git2r/src/libgit2/src/patch_parse.c | 48 git2r-0.29.0/git2r/src/libgit2/src/path.c | 210 git2r-0.29.0/git2r/src/libgit2/src/path.h | 89 git2r-0.29.0/git2r/src/libgit2/src/pathspec.c | 51 git2r-0.29.0/git2r/src/libgit2/src/pool.c | 94 git2r-0.29.0/git2r/src/libgit2/src/pool.h | 22 git2r-0.29.0/git2r/src/libgit2/src/posix.c | 69 git2r-0.29.0/git2r/src/libgit2/src/posix.h | 22 git2r-0.29.0/git2r/src/libgit2/src/proxy.c | 11 git2r-0.29.0/git2r/src/libgit2/src/push.c | 22 git2r-0.29.0/git2r/src/libgit2/src/reader.c | 20 git2r-0.29.0/git2r/src/libgit2/src/rebase.c | 193 git2r-0.29.0/git2r/src/libgit2/src/refdb.c | 190 git2r-0.29.0/git2r/src/libgit2/src/refdb.h | 69 git2r-0.29.0/git2r/src/libgit2/src/refdb_fs.c | 649 +- git2r-0.29.0/git2r/src/libgit2/src/reflog.c | 65 git2r-0.29.0/git2r/src/libgit2/src/refs.c | 447 - git2r-0.29.0/git2r/src/libgit2/src/refs.h | 31 git2r-0.29.0/git2r/src/libgit2/src/refspec.c | 151 git2r-0.29.0/git2r/src/libgit2/src/regexp.c |only git2r-0.29.0/git2r/src/libgit2/src/regexp.h |only git2r-0.29.0/git2r/src/libgit2/src/remote.c | 538 +- git2r-0.29.0/git2r/src/libgit2/src/remote.h | 7 git2r-0.29.0/git2r/src/libgit2/src/repository.c | 909 ++- git2r-0.29.0/git2r/src/libgit2/src/repository.h | 123 git2r-0.29.0/git2r/src/libgit2/src/reset.c | 15 git2r-0.29.0/git2r/src/libgit2/src/revert.c | 17 git2r-0.29.0/git2r/src/libgit2/src/revparse.c | 77 git2r-0.29.0/git2r/src/libgit2/src/revwalk.c | 157 git2r-0.29.0/git2r/src/libgit2/src/revwalk.h | 20 git2r-0.29.0/git2r/src/libgit2/src/runtime.c |only git2r-0.29.0/git2r/src/libgit2/src/runtime.h |only git2r-0.29.0/git2r/src/libgit2/src/settings.h |only git2r-0.29.0/git2r/src/libgit2/src/signature.c | 11 git2r-0.29.0/git2r/src/libgit2/src/sortedcache.c | 43 git2r-0.29.0/git2r/src/libgit2/src/sortedcache.h | 20 git2r-0.29.0/git2r/src/libgit2/src/stash.c | 122 git2r-0.29.0/git2r/src/libgit2/src/status.c | 41 git2r-0.29.0/git2r/src/libgit2/src/strarray.c |only git2r-0.29.0/git2r/src/libgit2/src/streams/mbedtls.c | 31 git2r-0.29.0/git2r/src/libgit2/src/streams/mbedtls.h | 2 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Title: Resampling Methods for Triangular and Trapezoidal Fuzzy Numbers
Description: The classical (i.e. Efron's, see Efron and Tibshirani (1994, ISBN:978-0412042317) "An Introduction to the Bootstrap") bootstrap is widely used for both the real (i.e. "crisp") and fuzzy data.
The main aim of the algorithms implemented in this package is to overcome a problem with repetition of a few distinct values and to create fuzzy numbers, which are "similar" (but not the same) to values from the initial sample.
To do this, different characteristics of triangular/trapezoidal numbers are kept (like the value, the ambiguity, etc., see Grzegorzewski et al. <doi:10.2991/eusflat-19.2019.68>, Grzegorzewski et al. (2020) <doi:10.2991/ijcis.d.201012.003>, Grzegorzewski et al. (2020) <doi:10.34768/amcs-2020-0022>, Romaniuk and Hryniewicz (2019) <doi:10.1007/s00500-018-3251-5>).
Some additional procedures related to these resampling methods are also provided,
like calculation of the Bertoluzza et al.'s distance (aka the mid/spread distance, see Bertoluzza et al. (1995) "On a new class of distances between fuzzy numbers")
and estimation of the p-value of the one-sample bootstrapped test for the mean (see Lubiano et al. (2016, <doi:10.1016/j.ejor.2015.11.016>)).
Additionally, there are procedures which randomly generate trapezoidal fuzzy numbers using some well-known statistical distributions.
Author: Maciej Romaniuk [cre],
Przemyslaw Grzegorzewski [aut],
Olgierd Hryniewicz [aut]
Maintainer: Maciej Romaniuk <mroman@ibspan.waw.pl>
Diff between FuzzyResampling versions 0.1.0 dated 2021-09-15 and 0.3.0 dated 2021-11-22
DESCRIPTION | 10 +- MD5 | 49 ++++++---- NAMESPACE | 7 + NEWS.md |only R/BertoluzzaDistance.R |only R/EWmethod.R | 2 R/FuzzyResampling-package.R |only R/GeneratorNExpUU.R |only R/GeneratorNU.R |only R/OneSampleCTest.R |only R/SEResamplingMean.R |only R/VAAmethod.R | 2 R/VAFmethod.R | 4 R/VAmethod.R | 2 R/classicalBoostrap.R | 2 R/dmethod.R | 2 R/utils.R | 50 +++++++++- R/wmethod.R | 2 README.md | 196 ++++++++++++++++++++++++++++++++++++----- man/BertoluzzaDistance.Rd |only man/EWmethod.Rd | 12 +- man/FuzzyResampling-package.Rd |only man/GeneratorNExpUU.Rd |only man/GeneratorNU.Rd |only man/OneSampleCTest.Rd |only man/SEResamplingMean.Rd |only man/VAAmethod.Rd | 14 +- man/VAFmethod.Rd | 14 +- man/VAmethod.Rd | 12 +- man/classicalBootstrap.Rd | 10 +- man/dmethod.Rd | 14 +- man/wmethod.Rd | 16 +-- 32 files changed, 333 insertions(+), 87 deletions(-)
More information about FuzzyResampling at CRAN
Permanent link
Title: Model Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Model menu includes interfaces for linear and logistic
regression, naive Bayes, neural networks, classification and regression trees,
model evaluation, collaborative filtering, decision analysis, and simulation.
The application extends the functionality in 'radiant.data'.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.model versions 1.4.1 dated 2021-10-10 and 1.4.2 dated 2021-11-22
DESCRIPTION | 16 +++--- MD5 | 60 +++++++++++------------ NEWS.md | 5 + R/crs.R | 2 R/crtree.R | 32 ++++++------ R/dtree.R | 8 +-- R/evalbin.R | 10 +-- R/evalreg.R | 4 - R/gbt.R | 20 +++---- R/logistic.R | 14 ++--- R/mnl.R | 18 +++---- R/nb.R | 10 +-- R/nn.R | 16 +++--- R/regress.R | 28 +++++------ R/rforest.R | 24 ++++----- R/simulater.R | 72 ++++++++++++++-------------- inst/app/tools/analysis/crs_ui.R | 14 ++--- inst/app/tools/analysis/crtree_ui.R | 42 ++++++++-------- inst/app/tools/analysis/dtree_ui.R | 81 ++++++++++++++++---------------- inst/app/tools/analysis/evalbin_ui.R | 24 ++++----- inst/app/tools/analysis/evalreg_ui.R | 4 - inst/app/tools/analysis/gbt_ui.R | 58 +++++++++++----------- inst/app/tools/analysis/logistic_ui.R | 36 +++++++------- inst/app/tools/analysis/mnl_ui.R | 40 +++++++-------- inst/app/tools/analysis/naivebayes_ui.R | 42 ++++++++-------- inst/app/tools/analysis/nn_ui.R | 54 ++++++++++----------- inst/app/tools/analysis/regress_ui.R | 38 +++++++-------- inst/app/tools/analysis/rforest_ui.R | 60 +++++++++++------------ inst/app/tools/analysis/simulater_ui.R | 63 +++++++++++------------- inst/app/www/style.css | 5 - man/dtree.Rd | 5 + 31 files changed, 453 insertions(+), 452 deletions(-)
Title: Header-Only C++ Mathematical Optimization Library for
'Armadillo'
Description: 'Ensmallen' is a templated C++ mathematical optimization library
(by the 'MLPACK' team) that provides a simple set of abstractions for writing an
objective function to optimize. Provided within are various standard and
cutting-edge optimizers that include full-batch gradient descent techniques,
small-batch techniques, gradient-free optimizers, and constrained optimization.
The 'RcppEnsmallen' package includes the header files from the 'Ensmallen' library
and pairs the appropriate header files from 'armadillo' through the
'RcppArmadillo' package. Therefore, users do not need to install 'Ensmallen' nor
'Armadillo' to use 'RcppEnsmallen'. Note that 'Ensmallen' is licensed under
3-Clause BSD, 'Armadillo' starting from 7.800.0 is licensed under Apache License 2,
'RcppArmadillo' (the 'Rcpp' bindings/bridge to 'Armadillo') is licensed under
the GNU GPL version 2 or later. Thus, 'RcppEnsmallen' is also licensed under
similar terms. Note that 'Ensmallen' requires a compiler that supports
'C++11' and 'Armadillo' 9.800 or later.
Author: James Joseph Balamuta [aut, cre, cph]
(<https://orcid.org/0000-0003-2826-8458>),
Dirk Eddelbuettel [aut, cph] (<https://orcid.org/0000-0001-6419-907X>)
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between RcppEnsmallen versions 0.2.18.0.1 dated 2021-10-22 and 0.2.18.1.1 dated 2021-11-22
ChangeLog | 7 +++++++ DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 10 ++++++++++ build/vignette.rds |binary inst/doc/using-rcppensmallen.html | 20 ++++++++++---------- inst/include/ensmallen_bits/cmaes/cmaes_impl.hpp | 2 +- inst/include/ensmallen_bits/ens_version.hpp | 6 +++--- 8 files changed, 41 insertions(+), 24 deletions(-)
Title: Multivariate Menu for Radiant: Business Analytics using R and
Shiny
Description: The Radiant Multivariate menu includes interfaces for perceptual
mapping, factor analysis, cluster analysis, and conjoint analysis. The
application extends the functionality in 'radiant.data'.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.multivariate versions 1.3.5 dated 2020-03-25 and 1.4.1 dated 2021-11-22
DESCRIPTION | 26 +++++++------- MD5 | 54 +++++++++++++++---------------- NEWS.md | 9 +++++ R/conjoint.R | 16 ++++----- R/full_factor.R | 6 +-- R/hclus.R | 8 ++-- R/kclus.R | 10 ++--- R/mds.R | 8 ++-- R/pre_factor.R | 35 ++++++++++---------- R/prmap.R | 16 ++++----- R/radiant.R | 6 +-- README.md | 20 ++++++----- inst/app/tools/analysis/conjoint_ui.R | 50 ++++++++++++++-------------- inst/app/tools/analysis/full_factor_ui.R | 4 +- inst/app/tools/analysis/hclus_ui.R | 10 ++--- inst/app/tools/analysis/kclus_ui.R | 13 ++++--- inst/app/tools/analysis/prmap_ui.R | 8 ++-- man/plot.conjoint.Rd | 2 - man/plot.full_factor.Rd | 2 - man/plot.hclus.Rd | 2 - man/plot.kclus.Rd | 2 - man/plot.mds.Rd | 2 - man/plot.pre_factor.Rd | 3 - man/plot.prmap.Rd | 2 - man/radiant.multivariate.Rd | 2 - man/radiant.multivariate_viewer.Rd | 2 - man/radiant.multivariate_window.Rd | 2 - man/summary.pre_factor.Rd | 1 28 files changed, 167 insertions(+), 154 deletions(-)
More information about radiant.multivariate at CRAN
Permanent link
Title: Polynomial Regression
Description: Automate formation and evaluation of polynomial regression models. The motivation for this package is described in 'Polynomial Regression As an Alternative to Neural Nets' by Xi Cheng, Bohdan Khomtchouk, Norman Matloff, and Pete Mohanty (<arXiv:1806.06850>).
Author: Norm Matloff [aut, cre] (<https://orcid.org/0000-0001-9179-6785>),
Xi Cheng [aut],
Pete Mohanty [aut] (<https://orcid.org/0000-0001-8531-3345>),
Bohdan Khomtchouk [aut],
Matthew Kotila [aut],
Robin Yancey [aut],
Robert Tucker [aut],
Allan Zhao [aut],
Tiffany Jiang [aut]
Maintainer: Norm Matloff <matloff@cs.ucdavis.edu>
Diff between polyreg versions 0.6.9 dated 2021-09-08 and 0.7.0 dated 2021-11-22
DESCRIPTION | 11 ++++-- MD5 | 19 +++++++---- NAMESPACE | 4 -- R/S3methods.R | 44 -------------------------- R/helper_functions.R | 36 --------------------- R/polyFit.R | 84 ++++++++++----------------------------------------- build |only data |only inst |only man/pef.Rd |only man/polyFit.Rd | 45 ++++++++++++--------------- man/weatherTS.Rd |only vignettes |only 13 files changed, 60 insertions(+), 183 deletions(-)