Title: Universal Storage Engine for Sparse and Dense Multidimensional
Arrays
Description: The universal storage engine 'TileDB' introduces a
powerful on-disk format for multi-dimensional arrays. It supports
dense and sparse arrays, dataframes and key-values stores, cloud
storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression,
encryption and checksum filters, uses a fully multi-threaded
implementation, supports parallel I/O, data versioning ('time
travel'), metadata and groups. It is implemented as an embeddable
cross-platform C++ library with APIs from several languages, and
integrations.
Author: TileDB, Inc. [aut, cph],
Dirk Eddelbuettel [cre]
Maintainer: Dirk Eddelbuettel <dirk@tiledb.com>
Diff between tiledb versions 0.10.0 dated 2021-11-18 and 0.10.1 dated 2021-11-26
DESCRIPTION | 6 ++--- MD5 | 26 ++++++++++++++----------- NAMESPACE | 1 NEWS.md | 13 ++++++++++++ R/Ctx.R | 2 - R/Error.R |only R/RcppExports.R | 4 +++ inst/doc/documentation.html | 20 ++++++++----------- inst/examples/quickstart_dense.R | 34 ++++++++++++++++++++++++++------- inst/examples/quickstart_dense_memfs.R |only inst/tinytest/test_misc.R |only man/tiledb_error_message.Rd |only src/RcppExports.cpp | 12 +++++++++++ src/libtiledb.cpp | 11 ++++++++++ tools/fetchTileDBLib.R | 7 +++++- tools/tiledbVersion.txt | 4 +-- 16 files changed, 104 insertions(+), 36 deletions(-)
Title: Record Everything that Happens in a 'Shiny' Application
Description: Track and record the use of applications and the user's interactions with 'Shiny' inputs.
Allows to trace the inputs with which the user interacts, the outputs generated,
as well as the errors displayed in the interface.
Author: Fanny Meyer [aut],
Victor Perrier [aut, cre],
Silex Technologies [fnd] (https://www.silex-ip.com)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinylogs versions 0.1.7 dated 2019-08-21 and 0.2.0 dated 2021-11-26
shinylogs-0.1.7/shinylogs/inst/assets |only shinylogs-0.2.0/shinylogs/DESCRIPTION | 27 shinylogs-0.2.0/shinylogs/MD5 | 92 - shinylogs-0.2.0/shinylogs/NAMESPACE | 71 shinylogs-0.2.0/shinylogs/NEWS.md | 8 shinylogs-0.2.0/shinylogs/R/dependencies.R | 40 shinylogs-0.2.0/shinylogs/R/onLoad.R | 19 shinylogs-0.2.0/shinylogs/R/read.R | 257 +-- shinylogs-0.2.0/shinylogs/R/storage.R | 720 +++------- shinylogs-0.2.0/shinylogs/R/tracking.R | 639 +++----- shinylogs-0.2.0/shinylogs/R/utils.R | 52 shinylogs-0.2.0/shinylogs/R/zzz.R | 6 shinylogs-0.2.0/shinylogs/README.md | 300 +--- shinylogs-0.2.0/shinylogs/build |only shinylogs-0.2.0/shinylogs/inst/doc |only shinylogs-0.2.0/shinylogs/inst/extdata/json/shinylogs_dev_1556273095707758000.json | 2 shinylogs-0.2.0/shinylogs/inst/extdata/json/shinylogs_dev_1556273104851394000.json | 2 shinylogs-0.2.0/shinylogs/inst/extdata/json/shinylogs_dev_1556273125819216000.json | 2 shinylogs-0.2.0/shinylogs/inst/extdata/json/shinylogs_dev_1556274292127124000.json | 2 shinylogs-0.2.0/shinylogs/inst/packer |only shinylogs-0.2.0/shinylogs/inst/testdata/shinylogs_dev_1556273095707758000.json | 2 shinylogs-0.2.0/shinylogs/inst/testdata/shinylogs_dev_1556273104851394000.json | 2 shinylogs-0.2.0/shinylogs/inst/testdata/shinylogs_dev_1556273125819216000.json | 2 shinylogs-0.2.0/shinylogs/inst/testdata/shinylogs_dev_1556274292127124000.json | 2 shinylogs-0.2.0/shinylogs/man/figures/connections-apps.png |binary shinylogs-0.2.0/shinylogs/man/figures/connections-day.png |binary shinylogs-0.2.0/shinylogs/man/figures/shinyWidgets-tabs.png |binary shinylogs-0.2.0/shinylogs/man/figures/ua-family.png |binary shinylogs-0.2.0/shinylogs/man/figures/ua-os.png |binary shinylogs-0.2.0/shinylogs/man/read_json_logs.Rd | 62 shinylogs-0.2.0/shinylogs/man/read_rds_logs.Rd | 52 shinylogs-0.2.0/shinylogs/man/store_custom.Rd |only shinylogs-0.2.0/shinylogs/man/store_googledrive.Rd |only shinylogs-0.2.0/shinylogs/man/store_json.Rd | 187 +- shinylogs-0.2.0/shinylogs/man/store_null.Rd | 155 +- shinylogs-0.2.0/shinylogs/man/store_rds.Rd | 188 +- shinylogs-0.2.0/shinylogs/man/store_sqlite.Rd | 190 +- shinylogs-0.2.0/shinylogs/man/track_usage.Rd | 392 ++--- shinylogs-0.2.0/shinylogs/man/use_tracking.Rd | 141 + shinylogs-0.2.0/shinylogs/tests/testthat.R | 8 shinylogs-0.2.0/shinylogs/tests/testthat/test-dependencies.R | 26 shinylogs-0.2.0/shinylogs/tests/testthat/test-read-json.R | 63 shinylogs-0.2.0/shinylogs/tests/testthat/test-storage.R | 151 +- shinylogs-0.2.0/shinylogs/tests/testthat/test-tracking.R | 81 - shinylogs-0.2.0/shinylogs/tests/testthat/test-use_tracking.R |only shinylogs-0.2.0/shinylogs/tests/testthat/test-utils.R | 42 shinylogs-0.2.0/shinylogs/vignettes |only 47 files changed, 1801 insertions(+), 2184 deletions(-)
Title: The Truncated Elliptical Family of Distributions
Description: It offers random numbers generation from members of the truncated multivariate elliptical family of distribution such as the truncated versions of the Normal, Student-t, Pearson VII, Slash, Logistic, among others. Particular distributions can be provided by specifying the density generating function. It also computes the first two moments (covariance matrix as well) for some particular distributions.
Author: Katherine A. L. Valeriano [aut, cre]
(<https://orcid.org/0000-0001-6388-4753>),
Larissa Avila Matos [ctb] (<https://orcid.org/0000-0002-2635-0901>),
Christian Galarza Morales [ctb]
(<https://orcid.org/0000-0002-4818-6006>)
Maintainer: Katherine A. L. Valeriano <katandreina@gmail.com>
Diff between relliptical versions 0.1.0 dated 2021-09-15 and 0.9.0 dated 2021-11-26
DESCRIPTION | 8 MD5 | 22 - R/Compute_Moments.R | 93 ++--- R/Random_Numbers.R | 352 +++++++++---------- README.md | 303 ++++++++--------- build/partial.rdb |binary inst/REFERENCES.bib | 7 man/figures/README-example2.0-1.png |only man/figures/README-example2.1-1.png |only man/figures/README-example3-1.png |binary man/mvtelliptical.Rd | 55 +-- man/rtelliptical.Rd | 91 ++--- src/Functions.cpp | 635 +++++++++++++++++------------------- 13 files changed, 781 insertions(+), 785 deletions(-)
Title: Interface with 'Nominatim' API Service
Description: Lite interface for getting data from 'OSM' service
'Nominatim' <https://nominatim.org/release-docs/latest/>. Extract
coordinates from addresses, find places near a set of coordinates,
search for amenities and return spatial objects on 'sf' format.
Author: Diego Hernangómez [aut, cre, cph]
(<https://orcid.org/0000-0001-8457-4658>),
Jindra Lacko [ctb, rev]
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>
Diff between nominatimlite versions 0.1.4 dated 2021-10-28 and 0.1.5 dated 2021-11-26
nominatimlite-0.1.4/nominatimlite/man/figures/README-McDonalds-1.png |only nominatimlite-0.1.4/nominatimlite/vignettes/McDonalds-1.png |only nominatimlite-0.1.5/nominatimlite/DESCRIPTION | 10 - nominatimlite-0.1.5/nominatimlite/MD5 | 56 +++---- nominatimlite-0.1.5/nominatimlite/NAMESPACE | 1 nominatimlite-0.1.5/nominatimlite/NEWS.md | 73 ++++------ nominatimlite-0.1.5/nominatimlite/R/geo_address_lookup.R | 4 nominatimlite-0.1.5/nominatimlite/R/geo_address_lookup_sf.R | 2 nominatimlite-0.1.5/nominatimlite/R/geo_amenity.R | 47 ++++-- nominatimlite-0.1.5/nominatimlite/R/geo_amenity_sf.R | 45 ++++-- nominatimlite-0.1.5/nominatimlite/R/geo_lite.R | 47 ++++-- nominatimlite-0.1.5/nominatimlite/R/geo_lite_sf.R | 45 ++++-- nominatimlite-0.1.5/nominatimlite/R/nominatimlite-package.R | 1 nominatimlite-0.1.5/nominatimlite/README.md | 22 +-- nominatimlite-0.1.5/nominatimlite/build/vignette.rds |binary nominatimlite-0.1.5/nominatimlite/data/osm_amenities.rda |binary nominatimlite-0.1.5/nominatimlite/inst/CITATION | 7 nominatimlite-0.1.5/nominatimlite/inst/WORDLIST | 1 nominatimlite-0.1.5/nominatimlite/inst/doc/nominatimlite.Rmd | 14 + nominatimlite-0.1.5/nominatimlite/inst/doc/nominatimlite.html | 17 +- nominatimlite-0.1.5/nominatimlite/man/figures/README-pizzahut-1.png |only nominatimlite-0.1.5/nominatimlite/man/figures/logo.png |binary nominatimlite-0.1.5/nominatimlite/man/geo_address_lookup.Rd | 4 nominatimlite-0.1.5/nominatimlite/man/geo_address_lookup_sf.Rd | 4 nominatimlite-0.1.5/nominatimlite/tests/testthat/test-geo_amenity.R | 7 nominatimlite-0.1.5/nominatimlite/tests/testthat/test-geo_amenity_sf.R | 7 nominatimlite-0.1.5/nominatimlite/tests/testthat/test-geo_lite.R | 6 nominatimlite-0.1.5/nominatimlite/tests/testthat/test-geo_lite_sf.R | 6 nominatimlite-0.1.5/nominatimlite/vignettes/nominatimlite.Rmd | 14 + nominatimlite-0.1.5/nominatimlite/vignettes/penta-1.png |binary nominatimlite-0.1.5/nominatimlite/vignettes/pizzahut-1.png |only 31 files changed, 280 insertions(+), 160 deletions(-)
Title: Implementation of the minMSE Treatment Assignment Method for One
or Multiple Treatment Groups
Description: Performs treatment assignment for (field) experiments considering available, possibly multivariate and continuous, information (covariates, observable characteristics), that is: forms balanced treatment groups, according to the minMSE-method as proposed by Schneider and Schlather (2017) <DOI:10419/161931>.
Author: Sebastian O. Schneider, Giulia Baldini
Maintainer: Sebastian O. Schneider <sschneider@coll.mpg.de>
Diff between minMSE versions 0.3.1 dated 2020-04-23 and 0.5.1 dated 2021-11-26
minMSE-0.3.1/minMSE/README.md |only minMSE-0.3.1/minMSE/man/gcd.Rd |only minMSE-0.3.1/minMSE/man/program_output.Rd |only minMSE-0.5.1/minMSE/DESCRIPTION | 15 - minMSE-0.5.1/minMSE/MD5 | 27 +- minMSE-0.5.1/minMSE/NAMESPACE | 21 +- minMSE-0.5.1/minMSE/R/MinMSET.R | 200 ++++++++++---------- minMSE-0.5.1/minMSE/R/RcppExports.R |only minMSE-0.5.1/minMSE/R/minMSE-package.R |only minMSE-0.5.1/minMSE/man/assign_treatment.Rd | 6 minMSE-0.5.1/minMSE/man/evaluate_solution.Rd | 11 - minMSE-0.5.1/minMSE/man/evaluate_solution.optim.Rd | 4 minMSE-0.5.1/minMSE/man/evaluate_solution_matrix.Rd |only minMSE-0.5.1/minMSE/man/evaluate_solution_vector.Rd |only minMSE-0.5.1/minMSE/man/output_file.Rd |only minMSE-0.5.1/minMSE/man/swap_treatment.Rd | 8 minMSE-0.5.1/minMSE/man/swap_treatment.optim.Rd | 8 minMSE-0.5.1/minMSE/man/swap_treatment_prev.Rd |only minMSE-0.5.1/minMSE/src |only 19 files changed, 167 insertions(+), 133 deletions(-)
Title: Item Analysis for Multiple Choice Tests
Description: Functions for analyzing multiple choice items. These analyses include
the convertion of student response into binaty data (correct/incorrect),
the computation of the number of corrected responses and grade for each subject,
the calculation of item difficulty and discrimination, the computation of the
frecuency and point-biserial correlation for each distractor and the graphical
analysis of each item.
Author: Ariel Armijo [aut, cre]
Maintainer: Ariel Armijo <arielarmijo@yahoo.es>
Diff between itan versions 2.0 dated 2021-11-26 and 2.0.1 dated 2021-11-26
itan-2.0.1/itan/DESCRIPTION | 6 +-- itan-2.0.1/itan/MD5 | 8 ++--- itan-2.0.1/itan/R/itan.R | 55 ++++++++++++++++++++++------------- itan-2.0.1/itan/man/agi.Rd | 24 ++++++++++++--- itan-2.0.1/itan/man/figures/i50.jpeg |only itan-2.0/itan/man/figures/i01.png |only 6 files changed, 61 insertions(+), 32 deletions(-)
Title: An Alternative Conflict Resolution Strategy
Description: R's default conflict management system gives the most
recently loaded package precedence. This can make it hard to detect
conflicts, particularly when they arise because a package update
creates ambiguity that did not previously exist. 'conflicted' takes a
different approach, making every conflict an error and forcing you to
choose which function to use.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between conflicted versions 1.0.4 dated 2019-06-21 and 1.1.0 dated 2021-11-26
conflicted-1.0.4/conflicted/tests/testthat/test-disambiguate.txt |only conflicted-1.1.0/conflicted/DESCRIPTION | 31 ++--- conflicted-1.1.0/conflicted/LICENSE |only conflicted-1.1.0/conflicted/MD5 | 46 ++++--- conflicted-1.1.0/conflicted/NAMESPACE | 2 conflicted-1.1.0/conflicted/NEWS.md | 20 +++ conflicted-1.1.0/conflicted/R/conflicts.R | 2 conflicted-1.1.0/conflicted/R/find.R | 39 +++++- conflicted-1.1.0/conflicted/R/package.R | 8 - conflicted-1.1.0/conflicted/R/prefer.R | 42 ++++++- conflicted-1.1.0/conflicted/R/utils.R | 2 conflicted-1.1.0/conflicted/R/zzz.R | 9 + conflicted-1.1.0/conflicted/README.md | 59 +++++----- conflicted-1.1.0/conflicted/man/conflict_prefer.Rd | 24 ++++ conflicted-1.1.0/conflicted/man/conflicted-package.Rd | 8 - conflicted-1.1.0/conflicted/tests/testthat/_snaps |only conflicted-1.1.0/conflicted/tests/testthat/data |only conflicted-1.1.0/conflicted/tests/testthat/funmatch |only conflicted-1.1.0/conflicted/tests/testthat/primitive |only conflicted-1.1.0/conflicted/tests/testthat/test-disambiguate.R | 22 --- conflicted-1.1.0/conflicted/tests/testthat/test-find.R | 35 +++++ conflicted-1.1.0/conflicted/tests/testthat/test-prefer.R | 31 ++++- conflicted-1.1.0/conflicted/tests/testthat/test-shim.R | 5 conflicted-1.1.0/conflicted/tests/testthat/test-zzz.R | 17 +- 24 files changed, 282 insertions(+), 120 deletions(-)
Title: Win Ratio Analysis of Composite Time-to-Event Outcomes
Description: Implements various win ratio methodologies for composite endpoints of death and
non-fatal events, including the (stratified) proportional win-fractions (PW) regression models
(Mao and Wang, 2020 <doi:10.1111/biom.13382>), (stratified) two-sample tests with possibly
recurrent nonfatal event, and sample size calculation for standard win ratio test (Mao et al.,
2021 <doi:10.1111/biom.13501>).
Author: Lu Mao and Tuo Wang
Maintainer: Lu Mao <lmao@biostat.wisc.edu>
Diff between WR versions 0.1.1 dated 2020-01-27 and 1.0 dated 2021-11-26
WR-0.1.1/WR/inst/doc/WR.R |only WR-0.1.1/WR/inst/doc/WR.Rmd |only WR-0.1.1/WR/inst/doc/WR.html |only WR-0.1.1/WR/vignettes/WR.Rmd |only WR-1.0/WR/DESCRIPTION | 23 WR-1.0/WR/MD5 | 55 + WR-1.0/WR/NAMESPACE | 41 - WR-1.0/WR/R/data.R | 101 ++ WR-1.0/WR/R/functions.R | 1102 +++++++++++++++++++------------- WR-1.0/WR/R/functions_SS.R |only WR-1.0/WR/R/functions_rec.R |only WR-1.0/WR/R/generic.R | 334 ++++++--- WR-1.0/WR/build/vignette.rds |binary WR-1.0/WR/data/gbc.rda |only WR-1.0/WR/data/hfaction_cpx9.rda |only WR-1.0/WR/inst/doc/PW_reg.R |only WR-1.0/WR/inst/doc/PW_reg.Rmd |only WR-1.0/WR/inst/doc/PW_reg.html |only WR-1.0/WR/inst/doc/PW_stratify_reg.R |only WR-1.0/WR/inst/doc/PW_stratify_reg.Rmd |only WR-1.0/WR/inst/doc/PW_stratify_reg.html |only WR-1.0/WR/inst/doc/WR_sample_size.R |only WR-1.0/WR/inst/doc/WR_sample_size.Rmd |only WR-1.0/WR/inst/doc/WR_sample_size.html |only WR-1.0/WR/inst/doc/WR_test_rec.R |only WR-1.0/WR/inst/doc/WR_test_rec.Rmd |only WR-1.0/WR/inst/doc/WR_test_rec.html |only WR-1.0/WR/man/WRSS.Rd |only WR-1.0/WR/man/WRrec.Rd |only WR-1.0/WR/man/base.Rd |only WR-1.0/WR/man/gbc.Rd |only WR-1.0/WR/man/gumbel.est.Rd |only WR-1.0/WR/man/hfaction_cpx9.Rd |only WR-1.0/WR/man/non_ischemic.Rd | 24 WR-1.0/WR/man/plot.pwreg.score.Rd | 19 WR-1.0/WR/man/print.WRrec.Rd |only WR-1.0/WR/man/print.pwreg.Rd | 5 WR-1.0/WR/man/print.pwreg.score.Rd | 5 WR-1.0/WR/man/pwreg.Rd | 54 + WR-1.0/WR/man/score.proc.Rd | 12 WR-1.0/WR/vignettes/PW_reg.Rmd |only WR-1.0/WR/vignettes/PW_stratify_reg.Rmd |only WR-1.0/WR/vignettes/WR_sample_size.Rmd |only WR-1.0/WR/vignettes/WR_test_rec.Rmd |only 44 files changed, 1116 insertions(+), 659 deletions(-)
Title: Efficient Bayesian Inference for Stochastic Volatility (SV)
Models
Description: Efficient algorithms for fully Bayesian estimation of stochastic volatility (SV) models with and without asymmetry (leverage) via Markov chain Monte Carlo (MCMC) methods. Methodological details are given in Kastner and Frühwirth-Schnatter (2014) <doi:10.1016/j.csda.2013.01.002> and Hosszejni and Kastner (2019) <doi:10.1007/978-3-030-30611-3_8>; the most common use cases are described in Hosszejni and Kastner (2021) <doi:10.18637/jss.v100.i12> and Kastner (2016) <doi:10.18637/jss.v069.i05> and the package examples.
Author: Darjus Hosszejni [aut, cre] (<https://orcid.org/0000-0002-3803-691X>),
Gregor Kastner [aut] (<https://orcid.org/0000-0002-8237-8271>)
Maintainer: Darjus Hosszejni <darjus.hosszejni@wu.ac.at>
Diff between stochvol versions 3.1.0 dated 2021-07-12 and 3.2.0 dated 2021-11-26
DESCRIPTION | 8 +-- MD5 | 88 +++++++++++++++++++++--------------------- NEWS.md | 7 +++ R/exports.R | 4 - R/generics.R | 4 - R/plotting.R | 4 - R/simulation.R | 4 - R/stochvol-cpp-doc.R | 4 - R/stochvol-package.R | 4 - R/util.R | 6 +- R/utilities_svdraws.R | 4 - R/validation.R | 4 - R/wrappers.R | 14 +++--- R/zzz.R | 4 - build/partial.rdb |binary build/vignette.rds |binary data/exrates.RData |binary inst/CITATION | 20 +++------ inst/doc/article.pdf |binary inst/doc/article2.Rnw | 11 ++--- inst/doc/article2.pdf |binary inst/doc/ref1.bib | 4 - inst/doc/ref2.bib | 15 +++---- man/specify_priors.Rd | 2 man/svsample.Rd | 6 +- src/densities.h | 4 - src/exports.cc | 4 - src/sampling_latent_states.cc | 4 - src/sampling_latent_states.h | 4 - src/sampling_main.cc | 4 - src/sampling_main.h | 4 - src/sampling_parameters.cc | 4 - src/sampling_parameters.h | 4 - src/single_update.cc | 4 - src/single_update.h | 4 - src/utils.h | 4 - src/utils_latent_states.cc | 4 - src/utils_latent_states.h | 4 - src/utils_main.cc | 4 - src/utils_main.h | 4 - src/utils_parameters.cc | 4 - src/utils_parameters.h | 4 - vignettes/article2.Rnw | 11 ++--- vignettes/ref1.bib | 4 - vignettes/ref2.bib | 15 +++---- 45 files changed, 160 insertions(+), 155 deletions(-)
Title: Item Analysis for Multiple Choice Tests
Description: Functions for analyzing multiple choice items. These analyses include
the convertion of student response into binaty data (correct/incorrect),
the computation of the number of corrected responses and grade for each subject,
the calculation of item difficulty and discrimination, the computation of the
frecuency and point-biserial correlation for each distractor and the graphical
analysis of each item.
Author: Ariel Armijo [aut, cre]
Maintainer: Ariel Armijo <arielarmijo@yahoo.es>
Diff between itan versions 1.0 dated 2017-03-28 and 2.0 dated 2021-11-26
itan-1.0/itan/data/clave.RData |only itan-1.0/itan/data/datos.RData |only itan-1.0/itan/inst/documentation/AGI.pdf |only itan-1.0/itan/inst/documentation/Analisis_de_items_en_las_pruebas_objetivas.pdf |only itan-1.0/itan/inst/documentation/Item_Analysis_Report.pdf |only itan-1.0/itan/inst/extdata/curso.csv |only itan-1.0/itan/man/analizarItems.Rd |only itan-1.0/itan/man/corregirItems.Rd |only itan-1.0/itan/man/frecuenciaDistractores.Rd |only itan-1.0/itan/man/itan.Rd |only itan-2.0/itan/DESCRIPTION | 31 itan-2.0/itan/LICENSE |only itan-2.0/itan/MD5 | 62 itan-2.0/itan/NAMESPACE | 21 itan-2.0/itan/R/data.R |only itan-2.0/itan/R/itan.R | 854 +++++----- itan-2.0/itan/R/utils.R |only itan-2.0/itan/data/clave.rda |only itan-2.0/itan/data/datos.rda |only itan-2.0/itan/inst/documentation/agi.pdf |only itan-2.0/itan/inst/documentation/attorresi.pdf |only itan-2.0/itan/inst/documentation/correlacicon-biserial-puntual.docx |only itan-2.0/itan/inst/documentation/item-analysis-report.pdf |only itan-2.0/itan/inst/documentation/morales.pdf |only itan-2.0/itan/inst/extdata/clave.csv | 4 itan-2.0/itan/inst/extdata/data.R |only itan-2.0/itan/inst/extdata/datos.csv | 141 - itan-2.0/itan/man/agi.Rd | 58 itan-2.0/itan/man/analizarDistractores.Rd | 42 itan-2.0/itan/man/calcularFrecuenciaDistractores.Rd |only itan-2.0/itan/man/calcularIndiceDificultad.Rd |only itan-2.0/itan/man/calcularIndiceDiscriminacion.Rd |only itan-2.0/itan/man/calcularNotas.Rd | 53 itan-2.0/itan/man/calcularPuntajes.Rd | 21 itan-2.0/itan/man/clave.Rd | 51 itan-2.0/itan/man/corregirRespuestas.Rd |only itan-2.0/itan/man/datos.Rd | 53 itan-2.0/itan/man/figures |only itan-2.0/itan/man/pBis.Rd | 44 itan-2.0/itan/tests |only 40 files changed, 715 insertions(+), 720 deletions(-)
Title: Unconditional Exact Test
Description: Performs unconditional exact tests and power calculations for 2x2 contingency tables.
For comparing two independent proportions, performs Barnard's test (1945)
<doi:10.1038/156177a0> using the original CSM test (Barnard, 1947 <doi:10.1093/biomet/34.1-2.123>),
using Fisher's p-value referred to as Boschloo's test (1970) <doi:10.1111/j.1467-9574.1970.tb00104.x>,
or using a Z-statistic (Suissa and Shuster, 1985, <doi:10.2307/2981892>).
For comparing two binary proportions, performs unconditional exact test using McNemar's
Z-statistic (Berger and Sidik, 2003, <doi:10.1191/0962280203sm312ra>),
using McNemar's conditional p-value, using McNemar's Z-statistic with continuity correction,
or using CSM test. Calculates confidence intervals for the difference in proportion.
This package interacts with pre-computed data available through the ExactData R package,
which is available in a 'drat' repository.
Install the ExactData R package from GitHub at <https://pcalhoun1.github.io/drat/>.
The ExactData R package is approximately 25 MB.
Author: Peter Calhoun [aut, cre]
Maintainer: Peter Calhoun <calhoun.peter@gmail.com>
Diff between Exact versions 3.0 dated 2021-09-02 and 3.1 dated 2021-11-26
DESCRIPTION | 10 ++--- MD5 | 59 +++++++++++++++++----------------- R/binomialCode.R | 13 +++---- R/checkPairedParam.R | 12 ++++-- R/confInt.R | 16 ++++----- R/confIntPaired.R | 20 +++++------ R/convertMethod.R |only R/csmPairedTemp.R | 14 ++++---- R/csmPairedTemp2sidedDelta.R | 10 ++--- R/exact.reject.region.R | 1 R/maxPvaluePaired.R | 4 +- R/maxPvaluePairedLookup.R | 4 +- R/mcnemar.2x2.R | 9 ++++- R/methodText.R | 18 ++++++---- R/moreExtremePaired.R | 33 ++++++++++++------- R/moreExtremePairedCSM.R | 8 ++-- R/paired.exact.test.R | 19 ++++++----- R/paired.reject.region.R | 74 +++++++++++++++++++++++++++---------------- R/pairedCode.R | 40 ++++++++++++++++------- R/pairedMethodText.R | 15 +++++--- R/power.exact.test.R | 8 ++-- R/power.paired.test.R | 35 ++++++++++---------- R/searchExtremePaired.R | 6 +-- R/trinomCalc.R | 1 build/partial.rdb |binary inst/NEWS.Rd | 14 ++++++++ man/Exact-package.Rd | 1 man/paired.exact.test.Rd | 24 ++++++++----- man/paired.reject.region.Rd | 13 ++++--- man/power.exact.test.Rd | 2 - man/power.paired.test.Rd | 16 +++++---- 31 files changed, 299 insertions(+), 200 deletions(-)
Title: Bayes Factors for Informative Hypotheses
Description: Computes approximated adjusted fractional Bayes factors for
equality, inequality, and about equality constrained hypotheses.
For a tutorial on this method, see Hoijtink, Mulder, van Lissa, & Gu,
(2019) <doi:10.31234/osf.io/v3shc>. For applications in structural equation
modeling, see: Van Lissa, Gu, Mulder, Rosseel, Van Zundert, &
Hoijtink, (2021) <doi:10.1080/10705511.2020.1745644>. For the statistical
underpinnings, see Gu, Mulder, and Hoijtink (2018) <doi:10.1111/bmsp.12110>;
Hoijtink, Gu, & Mulder, J. (2019) <doi:10.1111/bmsp.12145>; Hoijtink, Gu,
Mulder, & Rosseel, (2019) <doi:10.31234/osf.io/q6h5w>.
Author: Xin Gu [aut],
Herbert Hoijtink [aut],
Joris Mulder [aut],
Caspar J van Lissa [aut, cre],
Van Zundert Camiel [ctb],
Jeff Jones [ctb],
Niels Waller [ctb]
Maintainer: Caspar J van Lissa <c.j.vanlissa@uu.nl>
Diff between bain versions 0.2.6 dated 2021-09-03 and 0.2.7 dated 2021-11-26
bain-0.2.6/bain/R/bain-jasp-wrappers.R |only bain-0.2.6/bain/tests/testthat/test-JASP-ancova.R |only bain-0.2.6/bain/tests/testthat/test-JASP-anova.R |only bain-0.2.6/bain/tests/testthat/test-JASP-regression.R |only bain-0.2.6/bain/tests/testthat/test-JASP-ttest.R |only bain-0.2.6/bain/tests/testthat/test-get_estimates_lavaan.R |only bain-0.2.6/bain/tests/testthat/test-ttests_same.R |only bain-0.2.7/bain/DESCRIPTION | 25 bain-0.2.7/bain/MD5 | 80 bain-0.2.7/bain/NAMESPACE | 1 bain-0.2.7/bain/R/Bain.print.R | 30 bain-0.2.7/bain/R/bain_methods.R | 140 - bain-0.2.7/bain/R/bain_sensitivity.R | 9 bain-0.2.7/bain/R/complement2.R |only bain-0.2.7/bain/README.md | 22 bain-0.2.7/bain/build/partial.rdb |only bain-0.2.7/bain/build/vignette.rds |binary bain-0.2.7/bain/inst/doc/Introduction_to_bain.R | 418 +-- bain-0.2.7/bain/inst/doc/Introduction_to_bain.Rmd | 591 ++-- bain-0.2.7/bain/inst/doc/Introduction_to_bain.html | 1377 ++++------ bain-0.2.7/bain/man/bain.Rd | 89 bain-0.2.7/bain/man/bain_sensitivity.Rd | 9 bain-0.2.7/bain/man/seBeta.Rd | 162 - bain-0.2.7/bain/man/t_test.Rd | 156 - bain-0.2.7/bain/src/Bain.f90 | 3 bain-0.2.7/bain/tests/testthat/test-J.R | 4 bain-0.2.7/bain/tests/testthat/test-ancova.R | 1 bain-0.2.7/bain/tests/testthat/test-anova.R | 4 bain-0.2.7/bain/tests/testthat/test-bain_lm_standardized_bug.R | 2 bain-0.2.7/bain/tests/testthat/test-bain_sensitivity.R | 44 bain-0.2.7/bain/tests/testthat/test-baindefault.R | 24 bain-0.2.7/bain/tests/testthat/test-complement.R |only bain-0.2.7/bain/tests/testthat/test-debugExample1_lavaan_cfa.R | 3 bain-0.2.7/bain/tests/testthat/test-extra-bug.R | 10 bain-0.2.7/bain/tests/testthat/test-extra.R | 26 bain-0.2.7/bain/tests/testthat/test-extradefault.R | 6 bain-0.2.7/bain/tests/testthat/test-group-and-joint-bigger-one.R | 1 bain-0.2.7/bain/tests/testthat/test-lavaan-with-equal-constraints.R | 36 bain-0.2.7/bain/tests/testthat/test-lavaan_fraction.R | 6 bain-0.2.7/bain/tests/testthat/test-missing_samplesizes.R | 1 bain-0.2.7/bain/tests/testthat/test-other_fraction.R | 2 bain-0.2.7/bain/tests/testthat/test-regression.R | 6 bain-0.2.7/bain/tests/testthat/test-summary.R | 3 bain-0.2.7/bain/tests/testthat/test-ttest.R | 13 bain-0.2.7/bain/tests/testthat/test2-J.R | 2 bain-0.2.7/bain/vignettes/Introduction_to_bain.Rmd | 591 ++-- 46 files changed, 2002 insertions(+), 1895 deletions(-)
Title: Tidy Geospatial Networks
Description: Provides a tidy approach to spatial network
analysis, in the form of classes and functions that enable a seamless
interaction between the network analysis package 'tidygraph' and the
spatial analysis package 'sf'.
Author: Lucas van der Meer [aut, cre] (<https://orcid.org/0000-0001-6336-8628>),
Lorena Abad [aut] (<https://orcid.org/0000-0003-0554-734X>),
Andrea Gilardi [aut] (<https://orcid.org/0000-0002-9424-7439>),
Robin Lovelace [aut] (<https://orcid.org/0000-0001-5679-6536>)
Maintainer: Lucas van der Meer <luukvandermeer@live.nl>
Diff between sfnetworks versions 0.5.2 dated 2021-05-13 and 0.5.3 dated 2021-11-26
sfnetworks-0.5.2/sfnetworks/inst/doc/join_filter.R |only sfnetworks-0.5.2/sfnetworks/inst/doc/join_filter.Rmd |only sfnetworks-0.5.2/sfnetworks/inst/doc/join_filter.html |only sfnetworks-0.5.2/sfnetworks/inst/doc/morphers.R |only sfnetworks-0.5.2/sfnetworks/inst/doc/morphers.Rmd |only sfnetworks-0.5.2/sfnetworks/inst/doc/morphers.html |only sfnetworks-0.5.2/sfnetworks/inst/doc/preprocess_and_clean.R |only sfnetworks-0.5.2/sfnetworks/inst/doc/preprocess_and_clean.Rmd |only sfnetworks-0.5.2/sfnetworks/inst/doc/preprocess_and_clean.html |only sfnetworks-0.5.2/sfnetworks/inst/doc/routing.R |only sfnetworks-0.5.2/sfnetworks/inst/doc/routing.Rmd |only sfnetworks-0.5.2/sfnetworks/inst/doc/routing.html |only sfnetworks-0.5.2/sfnetworks/inst/doc/structure.R |only sfnetworks-0.5.2/sfnetworks/inst/doc/structure.Rmd |only sfnetworks-0.5.2/sfnetworks/inst/doc/structure.html |only sfnetworks-0.5.2/sfnetworks/vignettes/join_filter.Rmd |only sfnetworks-0.5.2/sfnetworks/vignettes/morphers.Rmd |only sfnetworks-0.5.2/sfnetworks/vignettes/preprocess_and_clean.Rmd |only sfnetworks-0.5.2/sfnetworks/vignettes/routing.Rmd |only sfnetworks-0.5.2/sfnetworks/vignettes/structure.Rmd |only sfnetworks-0.5.3/sfnetworks/DESCRIPTION | 14 +- sfnetworks-0.5.3/sfnetworks/MD5 | 69 +++++----- sfnetworks-0.5.3/sfnetworks/NEWS.md | 13 + sfnetworks-0.5.3/sfnetworks/R/plot.R | 5 sfnetworks-0.5.3/sfnetworks/R/sfnetwork.R | 13 + sfnetworks-0.5.3/sfnetworks/R/sfnetworks-package.R |only sfnetworks-0.5.3/sfnetworks/R/spatstat.R | 2 sfnetworks-0.5.3/sfnetworks/README.md | 5 sfnetworks-0.5.3/sfnetworks/build/vignette.rds |binary sfnetworks-0.5.3/sfnetworks/data/roxel.rda |binary sfnetworks-0.5.3/sfnetworks/inst/doc/sfn01_structure.R |only sfnetworks-0.5.3/sfnetworks/inst/doc/sfn01_structure.Rmd |only sfnetworks-0.5.3/sfnetworks/inst/doc/sfn01_structure.html |only sfnetworks-0.5.3/sfnetworks/inst/doc/sfn02_preprocess_clean.R |only sfnetworks-0.5.3/sfnetworks/inst/doc/sfn02_preprocess_clean.Rmd |only sfnetworks-0.5.3/sfnetworks/inst/doc/sfn02_preprocess_clean.html |only sfnetworks-0.5.3/sfnetworks/inst/doc/sfn03_join_filter.R |only sfnetworks-0.5.3/sfnetworks/inst/doc/sfn03_join_filter.Rmd |only sfnetworks-0.5.3/sfnetworks/inst/doc/sfn03_join_filter.html |only sfnetworks-0.5.3/sfnetworks/inst/doc/sfn04_routing.R |only sfnetworks-0.5.3/sfnetworks/inst/doc/sfn04_routing.Rmd |only sfnetworks-0.5.3/sfnetworks/inst/doc/sfn04_routing.html |only sfnetworks-0.5.3/sfnetworks/inst/doc/sfn05_morphers.R |only sfnetworks-0.5.3/sfnetworks/inst/doc/sfn05_morphers.Rmd |only sfnetworks-0.5.3/sfnetworks/inst/doc/sfn05_morphers.html |only sfnetworks-0.5.3/sfnetworks/man/plot.sfnetwork.Rd | 5 sfnetworks-0.5.3/sfnetworks/man/s2.Rd | 2 sfnetworks-0.5.3/sfnetworks/man/sfnetwork.Rd | 5 sfnetworks-0.5.3/sfnetworks/man/sfnetworks-package.Rd |only sfnetworks-0.5.3/sfnetworks/vignettes/join_filter.html |only sfnetworks-0.5.3/sfnetworks/vignettes/morphers.html |only sfnetworks-0.5.3/sfnetworks/vignettes/preprocess_and_clean.html |only sfnetworks-0.5.3/sfnetworks/vignettes/routing.html |only sfnetworks-0.5.3/sfnetworks/vignettes/sfn01_structure.Rmd |only sfnetworks-0.5.3/sfnetworks/vignettes/sfn02_preprocess_clean.Rmd |only sfnetworks-0.5.3/sfnetworks/vignettes/sfn03_join_filter.Rmd |only sfnetworks-0.5.3/sfnetworks/vignettes/sfn04_routing.Rmd |only sfnetworks-0.5.3/sfnetworks/vignettes/sfn05_morphers.Rmd |only sfnetworks-0.5.3/sfnetworks/vignettes/structure.html |only 59 files changed, 86 insertions(+), 47 deletions(-)
Title: Interface to Unidata netCDF (Version 4 or Earlier) Format Data
Files
Description: Provides a high-level R interface to data files written using Unidata's netCDF library (version 4 or earlier), which are binary data files that are portable across platforms and include metadata information in addition to the data sets. Using this package, netCDF files (either version 4 or "classic" version 3) can be opened and data sets read in easily. It is also easy to create new netCDF dimensions, variables, and files, in either version 3 or 4 format, and manipulate existing netCDF files. This package replaces the former ncdf package, which only worked with netcdf version 3 files. For various reasons the names of the functions have had to be changed from the names in the ncdf package. The old ncdf package is still available at the URL given below, if you need to have backward compatibility. It should be possible to have both the ncdf and ncdf4 packages installed simultaneously without a problem. However, the ncdf package does not provide an interface for netcdf version 4 files.
Author: David Pierce <dpierce@ucsd.edu>
Maintainer: David Pierce <dpierce@ucsd.edu>
Diff between ncdf4 versions 1.17.1 dated 2021-11-06 and 1.18 dated 2021-11-26
ChangeLog | 3 DESCRIPTION | 8 MD5 | 45 R/ncdf4.R | 158 ++- R/ncdf4_priv_att.R | 6 R/ncdf4_priv_dim.R | 15 R/ncdf4_priv_group.R | 27 R/ncdf4_priv_var.R | 12 configure | 2014 ++++++++++++++++---------------------------- man/ancvar_put.Rd | 4 man/nc_create.Rd | 2 man/nc_open.Rd | 7 man/nc_sync.Rd | 2 man/ncatt_get.Rd | 8 man/ncatt_put.Rd | 2 man/ncdim_def.Rd | 2 man/ncvar_add.Rd | 2 man/ncvar_change_missval.Rd | 2 man/ncvar_def.Rd | 2 man/ncvar_get.Rd | 2 man/ncvar_rename.Rd | 2 src/ncdf.c | 13 tools/aclocal.m4 |only tools/configure.ac |only tools/regenerate |only 25 files changed, 998 insertions(+), 1340 deletions(-)
Title: Testing, Monitoring, and Dating Structural Changes: C++ Version
Description: A fast implementation with additional experimental features for
testing, monitoring and dating structural changes in (linear)
regression models. 'strucchangeRcpp' features tests/methods from
the generalized fluctuation test framework as well as from
the F test (Chow test) framework. This includes methods to
fit, plot and test fluctuation processes (e.g. cumulative/moving
sum, recursive/moving estimates) and F statistics, respectively.
These methods are described in Zeileis et al. (2002)
<doi:10.18637/jss.v007.i02>.
Finally, the breakpoints in regression models with structural
changes can be estimated together with confidence intervals,
and their magnitude as well as the model fit can be evaluated
using a variety of statistical measures.
Author: Dainius Masiliunas [aut, cre] (<https://orcid.org/0000-0001-5654-1277>),
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>),
Marius Appel [aut],
Friedrich Leisch [aut],
Kurt Hornik [aut],
Christian Kleiber [aut],
Andrei Mirt [ctb] (<https://orcid.org/0000-0003-3654-2090>),
Bruce Hansen [ctb],
Edgar C. Merkle [ctb]
Maintainer: Dainius Masiliunas <pastas4@gmail.com>
Diff between strucchangeRcpp versions 1.5-3-1.0.3 dated 2021-05-26 and 1.5-3-1.0.4 dated 2021-11-26
strucchangeRcpp-1.5-3-1.0.3/strucchangeRcpp/src/Makevars.win |only strucchangeRcpp-1.5-3-1.0.4/strucchangeRcpp/DESCRIPTION | 6 +- strucchangeRcpp-1.5-3-1.0.4/strucchangeRcpp/MD5 | 25 +++++----- strucchangeRcpp-1.5-3-1.0.4/strucchangeRcpp/NEWS | 7 ++ strucchangeRcpp-1.5-3-1.0.4/strucchangeRcpp/build/partial.rdb |only strucchangeRcpp-1.5-3-1.0.4/strucchangeRcpp/build/vignette.rds |binary strucchangeRcpp-1.5-3-1.0.4/strucchangeRcpp/inst/CITATION | 8 +-- strucchangeRcpp-1.5-3-1.0.4/strucchangeRcpp/inst/doc/strucchange-intro.pdf |binary strucchangeRcpp-1.5-3-1.0.4/strucchangeRcpp/man/efp.Rd | 8 +-- strucchangeRcpp-1.5-3-1.0.4/strucchangeRcpp/man/plot.efp.Rd | 2 strucchangeRcpp-1.5-3-1.0.4/strucchangeRcpp/man/sctest.Rd | 4 - strucchangeRcpp-1.5-3-1.0.4/strucchangeRcpp/man/sctest.efp.Rd | 2 strucchangeRcpp-1.5-3-1.0.4/strucchangeRcpp/src/Makevars | 4 - strucchangeRcpp-1.5-3-1.0.4/strucchangeRcpp/vignettes/strucchange.bib | 2 strucchangeRcpp-1.5-3-1.0.4/strucchangeRcpp/vignettes/testout |only 15 files changed, 35 insertions(+), 33 deletions(-)
More information about strucchangeRcpp at CRAN
Permanent link
Title: Sustainable Transport Planning
Description: Tools for transport planning with an emphasis on spatial transport
data and non-motorized modes. Enables common transport planning tasks including:
downloading and cleaning transport datasets; creating geographic "desire lines"
from origin-destination (OD) data; route assignment, locally and via
interfaces to routing services such as <https://cyclestreets.net/> and
calculation of route segment attributes such as bearing.
The package implements the 'travel flow aggregration' method
described in Morgan and Lovelace (2020) <doi:10.1177/2399808320942779>.
Further information on the package's aim and scope can be found
in the vignettes and in a paper in the R Journal
(Lovelace and Ellison 2018) <doi:10.32614/RJ-2018-053>.
This package Suggests the 'pct' package which at the time of writing
is unavailable on CRAN. You can install it from the repository
'itsleeds/pct' on GitHub.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>),
Richard Ellison [aut],
Malcolm Morgan [aut] (<https://orcid.org/0000-0002-9488-9183>),
Barry Rowlingson [ctb],
Nick Bearman [ctb],
Nikolai Berkoff [ctb],
Scott Chamberlain [rev] (Scott reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/10),
Mark Padgham [ctb],
Andrea Gilardi [ctb] (<https://orcid.org/0000-0002-9424-7439>)
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stplanr versions 0.8.5 dated 2021-11-01 and 0.8.6 dated 2021-11-26
DESCRIPTION | 18 +-- MD5 | 28 ++--- NAMESPACE | 2 NEWS.md | 5 + R/SpatialLinesNetwork.R | 190 ++++++++++++++++++++++----------------- R/catchmentArea.R | 4 R/rnet_group.R | 78 ++++++++-------- R/route.R | 7 + R/stplanr-package.R | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/stplanr-route-nets.R | 2 inst/doc/stplanr-route-nets.Rmd | 2 inst/doc/stplanr.html | 4 vignettes/stplanr-route-nets.Rmd | 2 15 files changed, 199 insertions(+), 144 deletions(-)
Title: Core Functionality of the 'spatstat' Family
Description: Functionality for data analysis and modelling of
spatial data, mainly spatial point patterns,
in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.
Parametric models can be fitted to point pattern data using the functions ppm(), kppm(), slrm(), dppm() similar to glm(). Types of models include Poisson, Gibbs and Cox point processes, Neyman-Scott cluster processes, and determinantal point processes. Models may involve dependence on covariates, inter-point interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods.
A model can be fitted to a list of point patterns (replicated point pattern data) using the function mppm(). The model can include random effects and fixed effects depending on the experimental design, in addition to all the features listed above.
Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise(), AIC()) and variable selection (sdr). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Author: Adrian Baddeley [aut, cre],
Rolf Turner [aut],
Ege Rubak [aut],
Kasper Klitgaard Berthelsen [ctb],
Achmad Choiruddin [ctb],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb],
Chiara Fend [ctb],
Julian Gilbey [ctb],
Yongtao Guan [ctb],
Ute Hahn [ctb],
Kassel Hingee [ctb],
Abdollah Jalilian [ctb],
Marie-Colette van Lieshout [ctb],
Greg McSwiggan [ctb],
Tuomas Rajala [ctb],
Suman Rakshit [ctb],
Dominic Schuhmacher [ctb],
Rasmus Plenge Waagepetersen [ctb],
Hangsheng Wang [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.core versions 2.3-1 dated 2021-11-02 and 2.3-2 dated 2021-11-26
spatstat.core-2.3-1/spatstat.core/build |only spatstat.core-2.3-2/spatstat.core/DESCRIPTION | 8 spatstat.core-2.3-2/spatstat.core/MD5 | 75 spatstat.core-2.3-2/spatstat.core/NAMESPACE | 10 spatstat.core-2.3-2/spatstat.core/NEWS | 74 spatstat.core-2.3-2/spatstat.core/R/eem.R | 25 spatstat.core-2.3-2/spatstat.core/R/fii.R | 6 spatstat.core-2.3-2/spatstat.core/R/kppm.R | 118 - spatstat.core-2.3-2/spatstat.core/R/lurking.R | 914 +++++----- spatstat.core-2.3-2/spatstat.core/R/lurkslrm.R |only spatstat.core-2.3-2/spatstat.core/R/mincontrast.R | 106 - spatstat.core-2.3-2/spatstat.core/R/multihard.R | 4 spatstat.core-2.3-2/spatstat.core/R/objsurf.R | 30 spatstat.core-2.3-2/spatstat.core/R/pcf.R | 10 spatstat.core-2.3-2/spatstat.core/R/simulate.detPPF.R | 10 spatstat.core-2.3-2/spatstat.core/R/slrm.R | 4 spatstat.core-2.3-2/spatstat.core/R/summary.kppm.R | 2 spatstat.core-2.3-2/spatstat.core/R/sysdata.rda |binary spatstat.core-2.3-2/spatstat.core/inst/doc/packagesizes.txt | 1 spatstat.core-2.3-2/spatstat.core/man/BadGey.Rd | 2 spatstat.core-2.3-2/spatstat.core/man/Hybrid.Rd | 2 spatstat.core-2.3-2/spatstat.core/man/Kmodel.ppm.Rd | 4 spatstat.core-2.3-2/spatstat.core/man/dppm.Rd | 12 spatstat.core-2.3-2/spatstat.core/man/eem.Rd | 18 spatstat.core-2.3-2/spatstat.core/man/exactMPLEstrauss.Rd | 2 spatstat.core-2.3-2/spatstat.core/man/intensity.ppm.Rd | 2 spatstat.core-2.3-2/spatstat.core/man/intensity.slrm.Rd | 2 spatstat.core-2.3-2/spatstat.core/man/is.hybrid.Rd | 2 spatstat.core-2.3-2/spatstat.core/man/kppm.Rd | 7 spatstat.core-2.3-2/spatstat.core/man/lurking.slrm.Rd |only spatstat.core-2.3-2/spatstat.core/man/mincontrast.Rd | 14 spatstat.core-2.3-2/spatstat.core/man/objsurf.Rd | 13 spatstat.core-2.3-2/spatstat.core/man/rmhmodel.default.Rd | 2 spatstat.core-2.3-2/spatstat.core/man/slrm.Rd | 2 spatstat.core-2.3-2/spatstat.core/man/spatstat.core-internal.Rd | 25 spatstat.core-2.3-2/spatstat.core/man/spatstat.core-package.Rd | 843 +++++++++ spatstat.core-2.3-2/spatstat.core/man/vcov.slrm.Rd | 2 spatstat.core-2.3-2/spatstat.core/src/ripleybox.h | 72 spatstat.core-2.3-2/spatstat.core/src/ripleypoly.h | 4 spatstat.core-2.3-2/spatstat.core/tests/testsD.R | 5 40 files changed, 1810 insertions(+), 622 deletions(-)
Title: The Skew-Normal and Related Distributions Such as the Skew-t and
the SUN
Description: Build and manipulate probability distributions of the skew-normal
family and some related ones, notably the skew-t and the SUN families.
For the skew-normal and the skew-t distributions, statistical methods are
provided for data fitting and model diagnostics, in the univariate and the
multivariate case.
Author: Adelchi Azzalini [aut, cre] (<https://orcid.org/0000-0002-7583-1269>)
Maintainer: Adelchi Azzalini <adelchi.azzalini@unipd.it>
Diff between sn versions 2.0.0 dated 2021-03-28 and 2.0.1 dated 2021-11-26
DESCRIPTION | 8 +-- MD5 | 33 +++++++------- NEWS | 8 +++ R/sn-funct.R | 35 ++++++++++----- R/sun.R | 105 +++++++++++++++++------------------------------ build/partial.rdb |only build/vignette.rds |binary data/ais.rda |binary data/barolo.rda |binary data/frontier.rda |binary data/wines.rda |binary inst/CITATION | 18 ++++---- man/SUNdistr-base.Rd | 100 ++++++++++++++++++++++++-------------------- man/SUNdistr-class.Rd | 14 +++++- man/SUNdistr-op.Rd | 41 +++++++++--------- man/convertCSN2SUNpar.Rd | 4 - man/selm.Rd | 20 ++++++++ man/selm.fit.Rd | 5 +- 18 files changed, 214 insertions(+), 177 deletions(-)
Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, principal component analysis and correlation matrices,
cluster analyses, scatter plots, stacked scales, effects plots of regression
models (including interaction terms) and much more. This package supports
labelled data.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Alexander Bartel [ctb] (<https://orcid.org/0000-0002-1280-6138>),
Carsten Schwemmer [ctb],
Chuck Powell [ctb] (<https://orcid.org/0000-0002-3606-2188>),
Amir Djalovski [ctb],
Johannes Titz [ctb] (<https://orcid.org/0000-0002-1102-5719>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 2.8.9 dated 2021-07-10 and 2.8.10 dated 2021-11-26
DESCRIPTION | 16 MD5 | 122 +++---- R/html_print.R | 10 R/plot_frq.R | 2 R/plot_kfold_cv.R | 2 R/plot_models.R | 6 R/plot_residuals.R | 2 R/sjPlotPearsonsChi2Test.R | 2 R/sjPlotSetTheme.R | 12 R/tab_fa.R | 27 + R/tab_itemscale.R | 2 R/tab_model.R | 31 + R/tab_stackfrq.R | 2 R/tab_xtab.R | 6 R/tidiers.R | 15 README.md | 6 build/vignette.rds |binary inst/doc/blackwhitefigures.R | 7 inst/doc/blackwhitefigures.Rmd | 7 inst/doc/blackwhitefigures.html | 4 inst/doc/custplot.R | 7 inst/doc/custplot.Rmd | 7 inst/doc/custplot.html | 4 inst/doc/plot_interactions.R | 6 inst/doc/plot_interactions.Rmd | 6 inst/doc/plot_interactions.html | 4 inst/doc/plot_likert_scales.html | 16 inst/doc/plot_marginal_effects.R | 8 inst/doc/plot_marginal_effects.Rmd | 8 inst/doc/plot_marginal_effects.html | 4 inst/doc/plot_model_estimates.html | 6 inst/doc/sjtitemanalysis.html | 4 inst/doc/tab_bayes.html | 28 - inst/doc/tab_mixed.html | 86 ++--- inst/doc/tab_model_estimates.html | 4 inst/doc/tab_model_robust.html | 21 - inst/doc/table_css.html | 4 man/dist_chisq.Rd | 130 +++---- man/dist_f.Rd | 122 +++---- man/dist_norm.Rd | 120 +++---- man/dist_t.Rd | 116 +++--- man/plot_grid.Rd | 118 +++---- man/plot_kfold_cv.Rd | 118 +++---- man/plot_models.Rd | 3 man/plot_residuals.Rd | 140 ++++---- man/plot_stackfrq.Rd | 278 ++++++++-------- man/save_plot.Rd | 124 +++---- man/set_theme.Rd | 582 +++++++++++++++++------------------ man/sjPlot-themes.Rd | 304 +++++++++--------- man/sjp.poly.Rd | 278 ++++++++-------- man/sjplot.Rd | 162 ++++----- man/tab_df.Rd | 312 +++++++++--------- man/tab_fa.Rd | 7 man/tab_model.Rd | 14 man/view_df.Rd | 298 ++++++++--------- tests/testthat/test-plot_grpfrq.R | 2 tests/testthat/test-plot_model_std.R | 2 tests/testthat/test-tab_model.R | 2 vignettes/blackwhitefigures.Rmd | 7 vignettes/custplot.Rmd | 7 vignettes/plot_interactions.Rmd | 6 vignettes/plot_marginal_effects.Rmd | 8 62 files changed, 1965 insertions(+), 1799 deletions(-)
Title: Efficient Bayesian Inference for Time-Varying Parameter Models
with Shrinkage
Description: Efficient Markov chain Monte Carlo (MCMC) algorithms for fully Bayesian estimation of time-varying parameter models with shrinkage priors. Details on the algorithms used are provided in Bitto and Frühwirth-Schnatter (2019) <doi:10.1016/j.jeconom.2018.11.006> and
Cadonna et al. (2020) <doi:10.3390/econometrics8020020>. For details on the package, please see Knaus et al. (2021) <doi:10.18637/jss.v100.i13>.
Author: Peter Knaus [aut, cre] (<https://orcid.org/0000-0001-6498-7084>),
Angela Bitto-Nemling [aut],
Annalisa Cadonna [aut] (<https://orcid.org/0000-0003-0360-7628>),
Sylvia Frühwirth-Schnatter [aut]
(<https://orcid.org/0000-0003-0516-5552>),
Daniel Winkler [ctb],
Kemal Dingic [ctb]
Maintainer: Peter Knaus <peter.knaus@wu.ac.at>
Diff between shrinkTVP versions 2.0.3 dated 2021-10-21 and 2.0.4 dated 2021-11-26
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++-------- NEWS.md | 4 ++++ R/shrinkTVP.R | 7 +++++++ build/vignette.rds |binary inst/CITATION |only inst/doc/shrinkTVP.pdf |binary man/plot.mcmc.tvp.Rd | 6 +++--- man/shrinkTVP.Rd | 10 +++++++--- man/updateTVP.Rd | 7 +++++-- 10 files changed, 39 insertions(+), 20 deletions(-)
Title: Pedigree-based Relatedness Coefficients
Description: Recursive algorithms for computing various relatedness
coefficients, including pairwise kinship, kappa and identity
coefficients. Both autosomal and X-linked coefficients are computed.
Founders are allowed to be inbred, enabling construction of any given
kappa coefficients (Vigeland (2020) <doi:10.1007/s00285-020-01505-x>).
In addition to the standard pairwise coefficients, 'ribd' also
computes a range of lesser-known coefficients, including generalised
kinship coefficients (Karigl (1981)
<doi:10.1111/j.1469-1809.1981.tb00341.x>; Weeks and Lange (1988)
<https:www.ncbi.nlm.nih.gov/pmc/articles/PMC1715269>), two-locus
coefficients (Thompson (1988) <doi:10.1093/imammb/5.4.261>) and
multi-person coefficients. This package is part of the 'ped suite', a
collection of packages for pedigree analysis in R. Several methods of
'ribd' are featured in the online app 'QuickPed' available at
<https://magnusdv.shinyapps.io/quickped>.
Author: Magnus Dehli Vigeland [aut, cre]
(<https://orcid.org/0000-0002-9134-4962>)
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between ribd versions 1.3.0 dated 2021-05-28 and 1.3.1 dated 2021-11-26
ribd-1.3.0/ribd/R/kappaIBD.R |only ribd-1.3.1/ribd/DESCRIPTION | 51 +++++++++++++------------ ribd-1.3.1/ribd/MD5 | 14 +++--- ribd-1.3.1/ribd/NEWS.md | 5 ++ ribd-1.3.1/ribd/R/kappaIbd.R |only ribd-1.3.1/ribd/R/kinship.R | 53 +++++++++++++++++++------- ribd-1.3.1/ribd/build/partial.rdb |binary ribd-1.3.1/ribd/man/kinship.Rd | 14 +++--- ribd-1.3.1/ribd/tests/testthat/test-kinship.R | 18 ++++++++ 9 files changed, 104 insertions(+), 51 deletions(-)
Title: Friendly Regular Expressions
Description: A friendly interface for the construction of regular
expressions.
Author: Kevin Ushey [aut, cre],
Jim Hester [aut],
Robert Krzyzanowski [aut]
Maintainer: Kevin Ushey <kevinushey@gmail.com>
Diff between rex versions 1.2.0 dated 2020-04-21 and 1.2.1 dated 2021-11-26
DESCRIPTION | 34 +-- MD5 | 26 +- NEWS.md | 6 R/capture.R | 4 R/lookarounds.R | 2 README.md | 7 build/vignette.rds |binary inst/doc/log_parsing.Rmd | 2 inst/doc/log_parsing.html | 298 ++++++-------------------------- inst/doc/url_parsing.html | 426 +++++++++++++--------------------------------- man/capture.Rd | 2 man/group.Rd | 2 man/lookarounds.Rd | 2 vignettes/log_parsing.Rmd | 2 14 files changed, 234 insertions(+), 579 deletions(-)
Title: Connect to 'AWS Athena' using 'Boto3' ('DBI' Interface)
Description: Designed to be compatible with the R package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this 'Python' 'Boto3' Software Development Kit ('SDK')
<https://boto3.amazonaws.com/v1/documentation/api/latest/index.html> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between RAthena versions 2.3.0 dated 2021-10-26 and 2.4.0 dated 2021-11-26
RAthena-2.3.0/RAthena/R/util.R |only RAthena-2.3.0/RAthena/man/backend_dbplyr.Rd |only RAthena-2.4.0/RAthena/DESCRIPTION | 16 RAthena-2.4.0/RAthena/MD5 | 66 +- RAthena-2.4.0/RAthena/NAMESPACE | 4 RAthena-2.4.0/RAthena/NEWS.md | 11 RAthena-2.4.0/RAthena/R/Connection.R | 89 ++ RAthena-2.4.0/RAthena/R/Driver.R | 2 RAthena-2.4.0/RAthena/R/Options.R | 10 RAthena-2.4.0/RAthena/R/Result.R | 4 RAthena-2.4.0/RAthena/R/dplyr_integration.R | 298 ++++++---- RAthena-2.4.0/RAthena/R/fetch_utils.R | 4 RAthena-2.4.0/RAthena/R/sql_translate_env.R | 104 --- RAthena-2.4.0/RAthena/R/sql_translate_utils.R |only RAthena-2.4.0/RAthena/R/table.R | 15 RAthena-2.4.0/RAthena/R/utils.R |only RAthena-2.4.0/RAthena/R/zzz.R | 39 + RAthena-2.4.0/RAthena/inst/doc/aws_athena_unload.Rmd | 55 + RAthena-2.4.0/RAthena/inst/doc/aws_athena_unload.html | 47 + RAthena-2.4.0/RAthena/man/Query.Rd | 6 RAthena-2.4.0/RAthena/man/RAthena_options.Rd | 5 RAthena-2.4.0/RAthena/man/backend_dbplyr_v1.Rd |only RAthena-2.4.0/RAthena/man/backend_dbplyr_v2.Rd |only RAthena-2.4.0/RAthena/man/dbGetQuery.Rd | 2 RAthena-2.4.0/RAthena/man/dbQuote.Rd | 6 RAthena-2.4.0/RAthena/man/db_compute.Rd | 12 RAthena-2.4.0/RAthena/man/db_connection_describe.Rd |only RAthena-2.4.0/RAthena/man/db_copy_to.Rd | 6 RAthena-2.4.0/RAthena/man/db_desc.Rd | 2 RAthena-2.4.0/RAthena/man/dbplyr_edition.Rd |only RAthena-2.4.0/RAthena/man/sql_translate_env.Rd | 5 RAthena-2.4.0/RAthena/tests/testthat/helper.R | 9 RAthena-2.4.0/RAthena/tests/testthat/test-dbFetch-n.R |only RAthena-2.4.0/RAthena/tests/testthat/test-dplyr-compute.R | 5 RAthena-2.4.0/RAthena/tests/testthat/test-dplyr-sql-trans-env.R | 175 +++++ RAthena-2.4.0/RAthena/tests/testthat/test-keyboard-interrupt.R | 2 RAthena-2.4.0/RAthena/tests/testthat/test-metadata.R | 11 RAthena-2.4.0/RAthena/tests/testthat/test-onload.R |only RAthena-2.4.0/RAthena/vignettes/aws_athena_unload.Rmd | 55 + 39 files changed, 791 insertions(+), 274 deletions(-)
Title: 'NoSQL' Database Connector
Description: Simplified document database access and manipulation,
providing a common API across supported 'NoSQL' databases
'Elasticsearch', 'CouchDB', 'MongoDB' as well as 'SQLite/JSON1'.
Author: Ralf Herold [aut, cre] (<https://orcid.org/0000-0002-8148-6748>),
Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>),
Rich FitzJohn [aut],
Jeroen Ooms [aut]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between nodbi versions 0.5.0 dated 2021-11-21 and 0.5.1 dated 2021-11-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 8 +++++++- R/get.R | 29 +++++++++++++---------------- R/query.R | 59 +++++++++++++++++++++++++++++++++++++++-------------------- 5 files changed, 66 insertions(+), 44 deletions(-)
Title: Connect to 'AWS Athena' using R 'AWS SDK' 'paws' ('DBI'
Interface)
Description: Designed to be compatible with the 'R' package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this the 'R' 'AWS' Software Development Kit ('SDK') 'paws'
<https://github.com/paws-r/paws> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between noctua versions 2.3.0 dated 2021-10-26 and 2.4.0 dated 2021-11-26
noctua-2.3.0/noctua/man/backend_dbplyr.Rd |only noctua-2.4.0/noctua/DESCRIPTION | 16 noctua-2.4.0/noctua/MD5 | 60 +- noctua-2.4.0/noctua/NAMESPACE | 4 noctua-2.4.0/noctua/NEWS.md | 9 noctua-2.4.0/noctua/R/Connection.R | 92 ++- noctua-2.4.0/noctua/R/Driver.R | 2 noctua-2.4.0/noctua/R/Options.R | 10 noctua-2.4.0/noctua/R/Table.R | 15 noctua-2.4.0/noctua/R/dplyr_integration.R | 282 ++++++---- noctua-2.4.0/noctua/R/sql_translate_env.R | 96 --- noctua-2.4.0/noctua/R/sql_translate_utils.R |only noctua-2.4.0/noctua/R/utils.R | 7 noctua-2.4.0/noctua/R/zzz.R | 36 + noctua-2.4.0/noctua/inst/doc/aws_athena_unload.Rmd | 54 + noctua-2.4.0/noctua/inst/doc/aws_athena_unload.html | 47 + noctua-2.4.0/noctua/man/Query.Rd | 6 noctua-2.4.0/noctua/man/backend_dbplyr_v1.Rd |only noctua-2.4.0/noctua/man/backend_dbplyr_v2.Rd |only noctua-2.4.0/noctua/man/dbGetQuery.Rd | 2 noctua-2.4.0/noctua/man/dbQuote.Rd | 6 noctua-2.4.0/noctua/man/db_compute.Rd | 8 noctua-2.4.0/noctua/man/db_connection_describe.Rd |only noctua-2.4.0/noctua/man/db_desc.Rd | 2 noctua-2.4.0/noctua/man/dbplyr_edition.Rd |only noctua-2.4.0/noctua/man/noctua_options.Rd | 5 noctua-2.4.0/noctua/man/sql_translate_env.Rd | 5 noctua-2.4.0/noctua/tests/testthat/helper.R | 10 noctua-2.4.0/noctua/tests/testthat/test-base-write.R | 2 noctua-2.4.0/noctua/tests/testthat/test-dbFetch-n.R |only noctua-2.4.0/noctua/tests/testthat/test-dplyr-compute.R | 5 noctua-2.4.0/noctua/tests/testthat/test-dplyr-sql-trans-env.R | 144 ++++- noctua-2.4.0/noctua/tests/testthat/test-metadata.R | 7 noctua-2.4.0/noctua/tests/testthat/test-onload-functions.R |only noctua-2.4.0/noctua/vignettes/aws_athena_unload.Rmd | 54 + 35 files changed, 735 insertions(+), 251 deletions(-)
Title: 'Memoisation' of Functions
Description: Cache the results of a function so that when you
call it again with the same arguments it returns the previously computed
value.
Author: Hadley Wickham [aut],
Jim Hester [aut],
Winston Chang [aut, cre],
Kirill Müller [aut],
Daniel Cook [aut],
Mark Edmondson [ctb]
Maintainer: Winston Chang <winston@rstudio.com>
Diff between memoise versions 2.0.0 dated 2021-01-26 and 2.0.1 dated 2021-11-26
DESCRIPTION | 25 ++++++++++++------------- MD5 | 14 +++++++------- NEWS.md | 14 +++++++++++++- R/memoise.R | 14 ++++++++------ README.md | 19 ++++++++++++++++--- man/forget.Rd | 8 +++++--- man/has_cache.Rd | 2 +- man/memoise.Rd | 5 +++-- 8 files changed, 65 insertions(+), 36 deletions(-)
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre, dtc]
(<https://orcid.org/0000-0002-0734-2199>),
Christoph Burow [aut, trl, dtc]
(<https://orcid.org/0000-0002-5023-4046>),
Michael Dietze [aut] (<https://orcid.org/0000-0001-6063-1726>),
Margret C. Fuchs [aut] (<https://orcid.org/0000-0001-7210-1132>),
Christoph Schmidt [aut] (<https://orcid.org/0000-0002-2309-3209>),
Manfred Fischer [aut, trl],
Johannes Friedrich [aut] (<https://orcid.org/0000-0002-0805-9547>),
Norbert Mercier [aut] (<https://orcid.org/0000-0002-6375-9108>),
Rachel K. Smedley [ctb] (<https://orcid.org/0000-0001-7773-5193>),
Claire Christophe [ctb],
Antoine Zink [ctb] (<https://orcid.org/0000-0001-7146-1101>),
Julie Durcan [ctb] (<https://orcid.org/0000-0001-8724-8022>),
Georgina E. King [ctb, dtc] (<https://orcid.org/0000-0003-1059-8192>),
Anne Philippe [aut] (<https://orcid.org/0000-0002-5331-5087>),
Guillaume Guerin [ctb] (<https://orcid.org/0000-0001-6298-5579>),
Svenja Riedesel [aut] (<https://orcid.org/0000-0003-2936-8776>),
Martin Autzen [aut] (<https://orcid.org/0000-0001-6249-426X>),
Pierre Guibert [ctb] (<https://orcid.org/0000-0001-8969-8684>),
Dirk Mittelstrass [aut] (<https://orcid.org/0000-0002-9567-8791>),
Harrison J. Gray [aut] (<https://orcid.org/0000-0002-4555-7473>),
Jean-Michel Galharret [aut] (<https://orcid.org/0000-0003-2219-8727>),
Markus Fuchs [ths]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@aber.ac.uk>
Diff between Luminescence versions 0.9.15 dated 2021-09-02 and 0.9.16 dated 2021-11-26
DESCRIPTION | 51 ++- MD5 | 308 ++++++++++++------------ NAMESPACE | 2 NEWS.md | 97 ++++--- R/Luminescence-package.R | 8 R/Risoe.BINfileData2RLum.Analysis.R | 14 - R/Risoe.BINfileData2RLum.Data.Curve.R | 3 R/analyse_FadingMeasurement.R | 15 - R/analyse_SAR.CWOSL.R | 9 R/calc_CentralDose.R | 21 + R/calc_OSLLxTxRatio.R | 7 R/combine_De_Dr.R |only R/fit_EmissionSpectra.R | 5 R/fit_OSLLifeTimes.R | 11 R/get_Quote.R | 5 R/plot_GrowthCurve.R | 18 - R/plot_OSLAgeSummary.R |only R/plot_RLum.Data.Image.R | 2 R/plot_RadialPlot.R | 22 - R/read_BIN2R.R | 66 +++-- build/partial.rdb |binary inst/WORDLIST | 11 man/Analyse_SAR.OSLdata.Rd | 2 man/CW2pHMi.Rd | 2 man/CW2pLM.Rd | 2 man/CW2pLMi.Rd | 2 man/CW2pPMi.Rd | 2 man/GitHub-API.Rd | 2 man/Luminescence-package.Rd | 15 - man/PSL2Risoe.BINfileData.Rd | 2 man/RLum-class.Rd | 2 man/RLum.Analysis-class.Rd | 2 man/RLum.Data.Curve-class.Rd | 2 man/RLum.Data.Image-class.Rd | 2 man/RLum.Data.Spectrum-class.Rd | 2 man/RLum.Results-class.Rd | 2 man/Risoe.BINfileData-class.Rd | 2 man/Risoe.BINfileData2RLum.Analysis.Rd | 2 man/Second2Gray.Rd | 2 man/analyse_Al2O3C_CrossTalk.Rd | 2 man/analyse_Al2O3C_ITC.Rd | 2 man/analyse_Al2O3C_Measurement.Rd | 2 man/analyse_FadingMeasurement.Rd | 4 man/analyse_IRSAR.RF.Rd | 2 man/analyse_SAR.CWOSL.Rd | 4 man/analyse_SAR.TL.Rd | 2 man/analyse_baSAR.Rd | 2 man/analyse_pIRIRSequence.Rd | 2 man/analyse_portableOSL.Rd | 2 man/app_RLum.Rd | 2 man/apply_CosmicRayRemoval.Rd | 2 man/apply_EfficiencyCorrection.Rd | 2 man/bin_RLum.Data.Rd | 2 man/calc_AliquotSize.Rd | 2 man/calc_AverageDose.Rd | 2 man/calc_CentralDose.Rd | 4 man/calc_CobbleDoseRate.Rd | 2 man/calc_CommonDose.Rd | 2 man/calc_CosmicDoseRate.Rd | 2 man/calc_FadingCorr.Rd | 2 man/calc_FastRatio.Rd | 2 man/calc_FiniteMixture.Rd | 2 man/calc_FuchsLang2001.Rd | 2 man/calc_HomogeneityTest.Rd | 2 man/calc_Huntley2006.Rd | 2 man/calc_IEU.Rd | 2 man/calc_Kars2008.Rd | 2 man/calc_Lamothe2003.Rd | 2 man/calc_MaxDose.Rd | 2 man/calc_MinDose.Rd | 2 man/calc_OSLLxTxDecomposed.Rd | 2 man/calc_OSLLxTxRatio.Rd | 9 man/calc_SourceDoseRate.Rd | 2 man/calc_Statistics.Rd | 2 man/calc_TLLxTxRatio.Rd | 2 man/calc_ThermalLifetime.Rd | 2 man/calc_WodaFuchs2008.Rd | 2 man/calc_gSGC.Rd | 2 man/calc_gSGC_feldspar.Rd | 2 man/combine_De_Dr.Rd |only man/convert_Activity2Concentration.Rd | 2 man/convert_BIN2CSV.Rd | 2 man/convert_Concentration2DoseRate.Rd | 2 man/convert_Daybreak2CSV.Rd | 2 man/convert_PSL2CSV.Rd | 2 man/convert_RLum2Risoe.BINfileData.Rd | 2 man/convert_SG2MG.Rd | 2 man/convert_Wavelength2Energy.Rd | 2 man/convert_XSYG2CSV.Rd | 2 man/extract_IrradiationTimes.Rd | 2 man/fit_CWCurve.Rd | 2 man/fit_EmissionSpectra.Rd | 5 man/fit_LMCurve.Rd | 2 man/fit_OSLLifeTimes.Rd | 2 man/fit_SurfaceExposure.Rd | 2 man/fit_ThermalQuenching.Rd | 2 man/get_Layout.Rd | 2 man/get_Quote.Rd | 4 man/get_RLum.Rd | 2 man/get_Risoe.BINfileData.Rd | 2 man/get_rightAnswer.Rd | 2 man/length_RLum.Rd | 2 man/merge_RLum.Analysis.Rd | 2 man/merge_RLum.Data.Curve.Rd | 2 man/merge_RLum.Rd | 2 man/merge_RLum.Results.Rd | 2 man/merge_Risoe.BINfileData.Rd | 2 man/names_RLum.Rd | 2 man/plot_AbanicoPlot.Rd | 2 man/plot_DRCSummary.Rd | 2 man/plot_DRTResults.Rd | 2 man/plot_DetPlot.Rd | 2 man/plot_FilterCombinations.Rd | 2 man/plot_GrowthCurve.Rd | 4 man/plot_Histogram.Rd | 2 man/plot_KDE.Rd | 2 man/plot_NRt.Rd | 2 man/plot_OSLAgeSummary.Rd |only man/plot_RLum.Analysis.Rd | 2 man/plot_RLum.Data.Curve.Rd | 2 man/plot_RLum.Data.Image.Rd | 4 man/plot_RLum.Data.Spectrum.Rd | 2 man/plot_RLum.Rd | 2 man/plot_RLum.Results.Rd | 2 man/plot_ROI.Rd | 2 man/plot_RadialPlot.Rd | 4 man/plot_Risoe.BINfileData.Rd | 2 man/plot_ViolinPlot.Rd | 2 man/read_BIN2R.Rd | 4 man/read_Daybreak2R.Rd | 2 man/read_PSL2R.Rd | 2 man/read_RF2R.Rd | 2 man/read_SPE2R.Rd | 2 man/read_TIFF2R.Rd | 2 man/read_XSYG2R.Rd | 2 man/replicate_RLum.Rd | 2 man/report_RLum.Rd | 2 man/sTeve.Rd | 2 man/scale_GammaDose.Rd | 2 man/set_RLum.Rd | 2 man/set_Risoe.BINfileData.Rd | 2 man/smooth_RLum.Rd | 2 man/structure_RLum.Rd | 2 man/template_DRAC.Rd | 2 man/tune_Data.Rd | 2 man/use_DRAC.Rd | 2 man/verify_SingleGrainData.Rd | 2 man/write_R2BIN.Rd | 2 man/write_RLum2CSV.Rd | 2 tests/testthat/test_analyse_FadingMeasurement.R | 14 + tests/testthat/test_analyse_SARCWOSL.R | 2 tests/testthat/test_calc_CentralDose.R | 7 tests/testthat/test_combine_De_Dr.R |only tests/testthat/test_fit_EmissionSpectra.R | 3 tests/testthat/test_plot_GrowthCurve.R | 18 + tests/testthat/test_plot_OSLAgeSummary.R |only tests/testthat/test_read_BIN2R.R | 6 tests/testthat/test_verify_SingleGrainData.R | 3 158 files changed, 557 insertions(+), 460 deletions(-)
Title: Radiocarbon Calibration Curves
Description: The IntCal20 radiocarbon calibration curves (Reimer et al. 2020 <doi:10.1017/RDC.2020.68>) are provided here in a single data package, together with previous IntCal curves (IntCal13, IntCal09, IntCal04, IntCal98) and postbomb curves. Also provided are functions to copy the curves into memory, and to plot the curves and their underlying data, as well as functions to calibrate radiocarbon dates.
Author: Maarten Blaauw [aut, cre] (<https://orcid.org/0000-0002-5680-1515>)
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between IntCal versions 0.2.3 dated 2021-10-06 and 0.3.0 dated 2021-11-26
DESCRIPTION | 8 MD5 | 60 +- NEWS.md | 18 R/IntCal.R | 41 + R/file_formatting.R | 2 R/plots.R | 2 README | 20 build/partial.rdb |binary build/vignette.rds |binary inst/doc/calculations.Rmd | 4 inst/doc/calculations.html | 12 inst/doc/intro.Rmd | 16 inst/doc/intro.html | 51 +- inst/doc/plots.Rmd | 4 inst/doc/plots.html | 14 inst/extdata/postbomb_NH1.14C | 672 +++-------------------------- inst/extdata/postbomb_NH1_2009.14C |only inst/extdata/postbomb_NH1_monthly.14C |only inst/extdata/postbomb_NH2.14C | 624 +++------------------------ inst/extdata/postbomb_NH2_2009.14C |only inst/extdata/postbomb_NH2_monthly.14C |only inst/extdata/postbomb_NH3.14C | 565 +++---------------------- inst/extdata/postbomb_NH3_2009.14C |only inst/extdata/postbomb_NH3_monthly.14C |only inst/extdata/postbomb_SH1-2.14C | 720 +++----------------------------- inst/extdata/postbomb_SH1-2_2009.14C |only inst/extdata/postbomb_SH1-2_monthly.14C |only inst/extdata/postbomb_SH3.14C | 544 +++--------------------- inst/extdata/postbomb_SH3_2009.14C |only inst/extdata/postbomb_SH3_monthly.14C |only man/ccurve.Rd | 4 man/draw.ccurve.Rd | 2 man/list.ccurves.Rd | 2 vignettes/calculations.Rmd | 4 vignettes/intro.Rmd | 16 vignettes/plots.Rmd | 4 36 files changed, 511 insertions(+), 2898 deletions(-)
Title: Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Description: Contains tools for exploring Hardy-Weinberg equilibrium (Hardy, 1908; Weinberg, 1908) <doi:10.1126/science.28.706.49> for bi and multi-allelic genetic marker data. All classical tests (chi-square, exact, likelihood-ratio and permutation tests) with bi-allelic variants are included in the package, as well as functions for power computation and for the simulation of marker data under equilibrium and disequilibrium. Routines for dealing with markers on the X-chromosome are included (Graffelman & Weir, 2016) <doi: 10.1038/hdy.2016.20>, including Bayesian procedures. Some exact and permutation procedures also work with multi-allelic variants. Special test procedures that jointly address Hardy-Weinberg equilibrium and equality of allele frequencies in both sexes are supplied, for the bi and multi-allelic case. Functions for testing equilibrium in the presence of missing data by using multiple imputation are also provided. Implements several graphics for exploring the equilibrium status of a large set of bi-allelic markers: ternary plots with acceptance regions, log-ratio plots and Q-Q plots. The functionality of the package is explained in detail in a related JSS paper <doi:10.18637/jss.v064.i03>.
Author: Jan Graffelman [aut, cre],
Christopher Chang [ctb],
Xavi Puig [ctb],
Jan Wigginton [ctb],
Leonardo Ortoleva [ctb],
William R. Engels [ctb]
Maintainer: Jan Graffelman <jan.graffelman@upc.edu>
Diff between HardyWeinberg versions 1.7.3 dated 2021-11-17 and 1.7.4 dated 2021-11-26
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NAMESPACE | 1 + build/partial.rdb |binary inst/doc/HardyWeinberg.Rnw | 4 ++-- inst/doc/HardyWeinberg.pdf |binary man/HardyWeinberg-package.Rd | 4 ++-- vignettes/HardyWeinberg.Rnw | 4 ++-- 8 files changed, 19 insertions(+), 18 deletions(-)
Title: GSL Nonlinear Least-Squares Fitting
Description: An R interface to nonlinear least-squares optimization with the GNU Scientific Library (GSL), see M. Galassi et al. (2009, ISBN:0954612078). The available trust region methods include the Levenberg-Marquadt algorithm with and without geodesic acceleration, the Steihaug-Toint conjugate gradient algorithm for large systems and several variants of Powell's dogleg algorithm. Bindings are provided to tune a number of parameters affecting the low-level aspects of the trust region algorithms. The interface mimics R's nls() function and returns model objects inheriting from the same class.
Author: Joris Chau [aut, cre]
Maintainer: Joris Chau <joris.chau@openanalytics.eu>
Diff between gslnls versions 1.0.2 dated 2021-10-13 and 1.1.0 dated 2021-11-26
gslnls-1.0.2/gslnls/R/nls-methods.R |only gslnls-1.0.2/gslnls/R/utils.R |only gslnls-1.1.0/gslnls/DESCRIPTION | 11 - gslnls-1.1.0/gslnls/MD5 | 53 +++---- gslnls-1.1.0/gslnls/NAMESPACE | 6 gslnls-1.1.0/gslnls/NEWS.md | 4 gslnls-1.1.0/gslnls/R/nls.R | 181 ++++++++++++++----------- gslnls-1.1.0/gslnls/R/nls_large.R |only gslnls-1.1.0/gslnls/R/nls_methods.R |only gslnls-1.1.0/gslnls/man/anova.gsl_nls.Rd | 17 +- gslnls-1.1.0/gslnls/man/coef.gsl_nls.Rd | 12 + gslnls-1.1.0/gslnls/man/confint.gsl_nls.Rd |only gslnls-1.1.0/gslnls/man/confintd.Rd | 2 gslnls-1.1.0/gslnls/man/confintd.gsl_nls.Rd | 16 +- gslnls-1.1.0/gslnls/man/deviance.gsl_nls.Rd | 12 + gslnls-1.1.0/gslnls/man/df.residual.gsl_nls.Rd | 12 + gslnls-1.1.0/gslnls/man/fitted.gsl_nls.Rd | 12 + gslnls-1.1.0/gslnls/man/formula.gsl_nls.Rd | 12 + gslnls-1.1.0/gslnls/man/gsl_nls.Rd | 15 +- gslnls-1.1.0/gslnls/man/gsl_nls_control.Rd | 18 +- gslnls-1.1.0/gslnls/man/gsl_nls_large.Rd |only gslnls-1.1.0/gslnls/man/logLik.gsl_nls.Rd | 12 + gslnls-1.1.0/gslnls/man/nobs.gsl_nls.Rd | 12 + gslnls-1.1.0/gslnls/man/predict.gsl_nls.Rd | 14 + gslnls-1.1.0/gslnls/man/residuals.gsl_nls.Rd | 12 + gslnls-1.1.0/gslnls/man/summary.gsl_nls.Rd | 12 + gslnls-1.1.0/gslnls/man/vcov.gsl_nls.Rd | 12 + gslnls-1.1.0/gslnls/src/gsl_nls.h | 50 ++++++ gslnls-1.1.0/gslnls/src/init.c | 5 gslnls-1.1.0/gslnls/src/nls.c | 45 +++--- gslnls-1.1.0/gslnls/src/nls_large.c |only 31 files changed, 351 insertions(+), 206 deletions(-)
Title: Composite Indicator Construction and Analysis
Description: A comprehensive high-level package for composite indicator construction and analysis. It is a "development environment"
for composite indicators and scoreboards, which includes utilities for construction (indicator selection, denomination, imputation,
data treatment, normalisation, weighting and aggregation) and analysis (multivariate analysis, correlation plotting, short cuts for
principal component analysis, global sensitivity analysis, and more). A composite indicator is completely encapsulated inside a single
hierarchical list called a "COIN". This allows a fast and efficient work flow, as well as making quick copies, testing methodological variations and making comparisons.
It also includes many plotting options, both statistical (scatter plots, distribution plots) as well as for presenting results (maps,
bar charts, radar charts, and more).
Finally, three Shiny apps are available which enable fast data exploration, results presentation, and checking the effects of
altering weights.
Full documentation is found in the online book at <https://bluefoxr.github.io/COINrDoc/>, as well as the vignette.
Author: William Becker [aut, cre, cph]
(<https://orcid.org/0000-0002-6467-4472>)
Maintainer: William Becker <william.becker@bluefoxdata.eu>
Diff between COINr versions 0.5.5 dated 2021-09-16 and 0.6.0 dated 2021-11-26
COINr-0.5.5/COINr/man/is.coin.Rd |only COINr-0.6.0/COINr/DESCRIPTION | 8 COINr-0.6.0/COINr/MD5 | 76 ++-- COINr-0.6.0/COINr/NAMESPACE | 10 COINr-0.6.0/COINr/NEWS.md | 16 COINr-0.6.0/COINr/R/coin_2excel.R | 23 + COINr-0.6.0/COINr/R/coin_PCA.R | 35 +- COINr-0.6.0/COINr/R/coin_aggregate.R | 85 ++++ COINr-0.6.0/COINr/R/coin_assemble.R | 523 +++++++++++++++++------------- COINr-0.6.0/COINr/R/coin_audit_tools.R | 2 COINr-0.6.0/COINr/R/coin_compare.R | 2 COINr-0.6.0/COINr/R/coin_datacheck.R | 6 COINr-0.6.0/COINr/R/coin_indplot.R | 190 ++++++++++ COINr-0.6.0/COINr/R/coin_multivariate.R | 152 ++++++++ COINr-0.6.0/COINr/R/coin_normalise.R | 6 COINr-0.6.0/COINr/R/coin_preanalyse.R | 4 COINr-0.6.0/COINr/R/coin_regen.R | 44 +- COINr-0.6.0/COINr/R/coin_resultsdash.R | 6 COINr-0.6.0/COINr/R/coin_resultstable.R | 217 +++++++++--- COINr-0.6.0/COINr/R/coin_rew8r.R | 2 COINr-0.6.0/COINr/R/coin_sensitivity.R | 17 COINr-0.6.0/COINr/R/coin_treat.R | 2 COINr-0.6.0/COINr/R/getIn.R | 205 +++++++++++ COINr-0.6.0/COINr/README.md | 10 COINr-0.6.0/COINr/build/partial.rdb |binary COINr-0.6.0/COINr/inst/doc/Overview.html | 32 - COINr-0.6.0/COINr/man/aggregate.Rd | 22 + COINr-0.6.0/COINr/man/assemble.Rd | 14 COINr-0.6.0/COINr/man/colourTable.Rd | 4 COINr-0.6.0/COINr/man/extractYear.Rd | 8 COINr-0.6.0/COINr/man/getIn.Rd | 25 + COINr-0.6.0/COINr/man/getPCA.Rd | 4 COINr-0.6.0/COINr/man/getResults.Rd | 13 COINr-0.6.0/COINr/man/getStrengthNWeak.Rd | 60 +++ COINr-0.6.0/COINr/man/is.COIN.Rd |only COINr-0.6.0/COINr/man/outrankMatrix.Rd | 13 COINr-0.6.0/COINr/man/plotCorr.Rd | 18 - COINr-0.6.0/COINr/man/plotIndDot.Rd |only COINr-0.6.0/COINr/man/plotSARanks.Rd | 12 COINr-0.6.0/COINr/man/print.COIN.Rd |only COINr-0.6.0/COINr/man/rankDF.Rd | 11 41 files changed, 1441 insertions(+), 436 deletions(-)
Title: Hierarchical Bayesian Vector Autoregression
Description: Estimation of hierarchical Bayesian vector autoregressive models
following Kuschnig & Vashold (2021) <doi:10.18637/jss.v100.i14>.
Implements hierarchical prior selection for conjugate priors in the fashion
of Giannone, Lenza & Primiceri (2015) <doi:10.1162/REST_a_00483>.
Functions to compute and identify impulse responses, calculate forecasts,
forecast error variance decompositions and scenarios are available.
Several methods to print, plot and summarise results facilitate analysis.
Author: Nikolas Kuschnig [aut, cre] (<https://orcid.org/0000-0002-6642-2543>),
Lukas Vashold [aut] (<https://orcid.org/0000-0002-3562-3414>),
Michael McCracken [dtc],
Serena Ng [dtc]
Maintainer: Nikolas Kuschnig <nikolas.kuschnig@wu.ac.at>
Diff between BVAR versions 1.0.1 dated 2020-09-27 and 1.0.2 dated 2021-11-26
DESCRIPTION | 17 - MD5 | 63 +++--- NAMESPACE | 2 NEWS.md | 12 + R/10_bvar.R | 7 R/11_input.R | 23 +- R/41_minnesota.R | 2 R/42_dummy.R | 2 R/50_fcast_setup.R | 2 R/60_irf_setup.R | 4 R/64_irf_method.R | 29 ++ R/69_fevd_plot.R |only R/BVAR-package.R | 8 R/data.R | 2 R/zzz.R | 5 README.md |only build/partial.rdb |only build/vignette.rds |binary data/fred_md.rda |binary data/fred_qd.rda |binary inst/CITATION | 37 +-- inst/doc/article.Rnw | 77 +++---- inst/doc/article.pdf |binary inst/fred_trans.csv | 3 man/BVAR-package.Rd | 8 man/bv_dummy.Rd | 2 man/bv_fcast.Rd | 2 man/bv_irf.Rd | 4 man/bv_minnesota.Rd | 2 man/bvar.Rd | 7 man/fred_qd.Rd | 4 man/irf.bvar.Rd | 12 - vignettes/article.Rnw | 77 +++---- vignettes/refs.bib | 521 +++++++++++++++++++++++++------------------------- 34 files changed, 497 insertions(+), 437 deletions(-)
Title: Flexible Bayes Factor Testing of Scientific Expectations
Description: Implementation of various default Bayes factors
for testing statistical hypotheses. The package is
intended for applied quantitative researchers in the
social and behavioral sciences, medical research,
and related fields. The Bayes factor tests can be
executed for statistical models such as
univariate and multivariate normal linear models,
generalized linear models, special cases of
linear mixed models, survival models, relational
event models. Parameters that can be tested are
location parameters (e.g., group means, regression coefficients),
variances (e.g., group variances), and measures of
association (e.g,. bivariate correlations), among others.
The statistical underpinnings are
described in
Mulder, Hoijtink, and Xin (2019) <arXiv:1904.00679>,
Mulder and Gelissen (2019) <arXiv:1807.05819>,
Mulder (2016) <DOI:10.1016/j.jmp.2014.09.004>,
Mulder and Fox (2019) <DOI:10.1214/18-BA1115>,
Mulder and Fox (2013) <DOI:10.1007/s11222-011-9295-3>,
Boeing-Messing, van Assen, Hofman, Hoijtink, and Mulder (2017) <DOI:10.1037/met0000116>,
Hoijtink, Mulder, van Lissa, and Gu, (2018) <DOI:10.31234/osf.io/v3shc>,
Gu, Mulder, and Hoijtink, (2018) <DOI:10.1111/bmsp.12110>,
Hoijtink, Gu, and Mulder, (2018) <DOI:10.1111/bmsp.12145>, and
Hoijtink, Gu, Mulder, and Rosseel, (2018) <DOI:10.1037/met0000187>. When using the
packages, please refer to Mulder et al. (2021) <DOI:10.18637/jss.v100.i18>.
Author: Joris Mulder [aut, cre],
Caspar van Lissa [aut, ctb],
Donald R. Williams [aut, ctb],
Xin Gu [aut],
Anton Olsson-Collentine [aut, ctb],
Florian Boeing-Messing [aut, ctb],
Jean-Paul Fox [aut, ctb],
Janosch Menke [ctb],
Robbie van Aert [ctb],
Barry Brown [ctb],
James Lovato [ctb],
Kathy Russell [ctb],
Lapack 3.8 [ctb],
Jack Dongarra [ctb],
Jim Bunch [ctb],
Cleve Moler [ctb],
Gilbert Stewart [ctb],
John Burkandt [ctb],
Ashwith Rego [ctb],
Alexander Godunov [ctb],
Alan Miller [ctb],
Jean-Pierre Moreau [ctb],
The R Core Team [cph]
Maintainer: Joris Mulder <j.mulder3@tilburguniversity.edu>
Diff between BFpack versions 0.3.2 dated 2021-02-02 and 1.0.0 dated 2021-11-26
DESCRIPTION | 18 MD5 | 89 NAMESPACE | 1 R/BF.coeftest.R |only R/BF.default.R | 12 R/BF.lm.R | 15 R/BF_cortest.R | 1 R/BF_methods.R | 4 R/BFhetcor.R | 1 R/BFicc.R | 1 R/BFttest.R | 7 R/BFvar.R | 1 R/get_estimates_unique_to_BFpack.R | 17 R/helper_functions.R | 12 R/import_parser.R | 24 R/therapeutic.R | 38 README.md | 40 build/vignette.rds |binary data/actors.csv | 50 data/attention.csv | 104 data/fmri.csv | 28 data/memory.csv | 82 data/relevents.csv | 456 data/same_culture.csv | 52 data/same_location.csv | 52 data/sivan.csv | 1776 - data/therapeutic.csv | 58 data/timssICC.csv |33542 +++++++++---------- data/tvprices.csv | 120 data/wilson.csv | 1486 inst/CITATION |only inst/doc/vignette_BFpack.Rmd | 148 inst/doc/vignette_BFpack.html | 452 man/BF.Rd | 4 man/figures/logo_BFpack.png |binary tests/testthat.R | 10 tests/testthat/test_BFcoeftest.R |only tests/testthat/test_BFcoxph.R | 22 tests/testthat/test_BFglm.R | 28 tests/testthat/test_BFsurvreg.R | 14 tests/testthat/test_BFzeroinfl.R | 16 tests/testthat/test_application3_BF.BF_bartlett.R | 76 tests/testthat/test_application4_BF.mlm_regression.R | 72 tests/testthat/test_bartlett.R | 90 tests/testthat/test_get_estimates_matrix.R | 12 tests/testthat/test_hetcor.R | 96 vignettes/vignette_BFpack.Rmd | 148 47 files changed, 19667 insertions(+), 19608 deletions(-)
Title: Probabilistic Population Projection
Description: Generating population projections for all countries of the world using several probabilistic components, such as total fertility rate and life expectancy (Raftery et al., 2012 <doi:10.1073/pnas.1211452109>).
Author: Hana Sevcikova, Adrian Raftery, Thomas Buettner
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesPop versions 8.1-3 dated 2020-05-05 and 9.0-0 dated 2021-11-26
ChangeLog | 30 + DESCRIPTION | 14 MD5 | 55 +- NAMESPACE | 5 R/aggregate.R | 136 +++-- R/get_outputs.R | 393 ++++++++++------ R/pasfr.R | 230 +++++---- R/plot_functions.R | 45 - R/predict.pop.R | 850 +++++++++++++++++++++++++---------- R/predict_subnat.R | 253 ++++++---- build |only man/LifeTableMx.Rd | 13 man/age.specific.migration.Rd | 54 ++ man/bayesPop-package.Rd | 15 man/expressions.Rd | 12 man/get.pop.Rd | 2 man/pop.aggregate.Rd | 12 man/pop.predict.subnat.Rd | 49 +- man/pop.pyramid.Rd | 12 man/pop.trajectories.plot.Rd | 6 man/predict.pop.Rd | 21 man/project.pasfr.Rd | 44 + man/specific_expressions.Rd | 10 man/summary.bayesPop.prediction.Rd | 19 man/vwBaseYear.Rd | 8 src/bayesPop_init.c | 12 src/projection_functions.c | 876 +++++++++---------------------------- tests/run_tests.R | 5 tests/test_functions.R | 31 - 29 files changed, 1738 insertions(+), 1474 deletions(-)
Title: Data from all Seasons of Survivor (US) TV Series in Tidy Format
Description: Several datasets which detail the results and events of each season of Survivor. This includes
details on the cast, voting history, immunity and reward challenges, jury votes and viewers. This data is
useful for practicing data wrangling, graph analytics and analysing how each season of Survivor played out.
Includes 'ggplot2' scales and colour palettes for visualisation.
Author: Daniel Oehm [aut, cre]
Maintainer: Daniel Oehm <danieloehm@gmail.com>
Diff between survivoR versions 0.9.5 dated 2021-11-20 and 0.9.6 dated 2021-11-26
DESCRIPTION | 6 MD5 | 22 +-- NEWS.md | 8 + README.md | 342 ++++++++++++++++++++++++++++-------------------- data/castaways.rda |binary data/challenges.rda |binary data/confessionals.rda |binary data/season-summary.rda |binary data/tribe-colours.rda |binary data/tribe-mapping.rda |binary data/viewers.rda |binary data/vote-history.rda |binary 12 files changed, 222 insertions(+), 156 deletions(-)
Title: Text Mining of PubMed Abstracts
Description: Text mining of PubMed Abstracts (text and XML) from <https://pubmed.ncbi.nlm.nih.gov/>.
Author: Jyoti Rani, S.Ramachandran, Ab Rauf Shah
Maintainer: S. Ramachandran <ramuigib@gmail.com>
Diff between pubmed.mineR versions 1.0.18 dated 2021-07-26 and 1.0.19 dated 2021-11-26
DESCRIPTION | 12 +++++++----- MD5 | 22 ++++++++++++++-------- NAMESPACE | 5 ++++- R/co_occurrence_advance.R |only R/pubtator_function_JSON.R |only R/xmlgene_atomizations_new.R |only data/GeneToEntrez.rda |binary data/HGNC2UniprotID.rda |binary data/HGNCdata.rda |binary data/common_words_new.rda |binary man/co_occurrence_advance.Rd |only man/pubtator_function_JSON.Rd |only man/uniprotfun.Rd | 4 ++-- man/xmlgene_atomizations.Rd | 4 ++-- man/xmlgene_atomizations_new.Rd |only 15 files changed, 29 insertions(+), 18 deletions(-)
Title: Generalized Price and Quantity Indexes
Description: A small package for calculating lots of different price indexes, and by extension quantity indexes. Provides tools to build and work with any type of bilateral generalized-mean index (of which most price indexes are), along with a few important indexes that don't belong to the generalized-mean family (e.g., superlative quadratic-mean indexes, GEKS). Implements and extends many of the methods in Balk (2008, ISBN:978-1-107-40496-0), von der Lippe (2001, ISBN:3-8246-0638-0), and the CPI manual (2020, ISBN:978-1-51354-298-0) for bilateral price indexes.
Author: Steve Martin [aut, cre, cph]
Maintainer: Steve Martin <stevemartin041@gmail.com>
Diff between gpindex versions 0.3.6 dated 2021-10-02 and 0.3.9 dated 2021-11-26
DESCRIPTION | 8 - MD5 | 70 ++++++------ NAMESPACE | 4 NEWS | 10 + R/geks.R | 4 R/helper_functions.R | 34 +---- R/means.R | 61 ++++------ R/price_indexes.R | 102 ++++++++++++----- R/utilities.R | 41 ++++--- R/weights.R | 61 +++++++--- README.md | 135 +++++++++++------------ inst/po/en@quot/LC_MESSAGES/R-gpindex.mo |binary inst/po/fr/LC_MESSAGES/R-gpindex.mo |binary man/contributions.Rd | 6 - man/geks.Rd | 4 man/generalized_mean.Rd | 4 man/gpindex.Rd | 10 + man/lehmer_mean.Rd | 4 man/logarithmic_means.Rd | 4 man/nested_mean.Rd | 4 man/offset_prices.Rd | 16 ++ man/price_indexes.Rd | 119 +++++++++++++++++--- man/transform_weights.Rd | 2 po/R-fr.po | 10 - po/R-gpindex.pot | 9 + tests/Examples/gpindex-Ex.Rout.save | 97 ++++++++++++++++- tests/test_geks.R | 4 tests/test_geks.Rout.save | 4 tests/test_means.R | 1 tests/test_means.Rout.save | 2 tests/test_price_indexes.R | 176 +++++++++++++++---------------- tests/test_price_indexes.Rout.save | 36 +++--- tests/test_utilities.R | 2 tests/test_utilities.Rout.save | 12 -- tests/test_weights.R | 20 ++- tests/test_weights.Rout.save | 22 ++- 36 files changed, 685 insertions(+), 413 deletions(-)
Title: R Interface for Google 'Cloud Pub/Sub' REST API
Description: Provides an easy to use interface to the 'Google
Pub/Sub' REST API <https://cloud.google.com/pubsub/docs/reference/rest>.
Author: Andrea Dodet [aut, cre]
Maintainer: Andrea Dodet <andodet@gmail.com>
Diff between googlePubsubR versions 0.0.1 dated 2021-11-12 and 0.0.2 dated 2021-11-26
DESCRIPTION | 6 MD5 | 54 + NAMESPACE | 2 NEWS.md | 11 R/auth.R | 78 +- R/objects.R | 7 R/schemas.R | 492 +++++++++--------- R/snapshots.R | 375 ++++++------- R/subscriptions.R | 846 +++++++++++++++---------------- R/topics.R | 618 +++++++++++----------- R/utils.R | 131 +++- README.md | 196 +++---- inst/doc/getting_started.html | 4 inst/doc/shiny_consumer.html | 4 inst/shiny/consumer_example/app.R | 13 man/DlqPolicy.Rd | 3 man/PubsubMessage.Rd | 2 man/msg_decode.Rd |only man/msg_encode.Rd |only man/schemas_exists.Rd | 2 man/schemas_list.Rd | 2 man/schemas_validate_message.Rd | 2 man/snapshots_exists.Rd | 2 man/subscriptions_ack.Rd | 2 man/subscriptions_exists.Rd | 2 man/subscriptions_list.Rd | 2 man/subscriptions_modify_ack_deadline.Rd | 8 man/subscriptions_seek.Rd | 2 tests/testthat/test-3-topics.R | 10 29 files changed, 1475 insertions(+), 1401 deletions(-)
Title: Generative Art with 'ggplot2'
Description: Provides algorithms for creating artworks in the 'ggplot2' language that incorporate some form of randomness.
Author: Koen Derks [aut, cre]
Maintainer: Koen Derks <koen-derks@hotmail.com>
Diff between aRtsy versions 0.1.4 dated 2021-10-25 and 0.1.5 dated 2021-11-26
DESCRIPTION | 10 MD5 | 47 +- NAMESPACE | 5 NEWS.md | 14 R/RcppExports.R | 12 R/canvas_ant.R | 2 R/canvas_chladni.R |only R/canvas_cobweb.R |only R/canvas_function.R | 48 +- R/canvas_phyllotaxis.R |only R/canvas_recaman.R |only R/colorPalette.R | 35 + R/zzz.R | 1 README.md | 124 ++++- inst/CITATION | 4 man/aRtsy.Rd | 9 man/canvas_chladni.Rd |only man/canvas_cobweb.Rd |only man/canvas_function.Rd | 17 man/canvas_phyllotaxis.Rd |only man/canvas_recaman.Rd |only man/colorPalette.Rd | 6 man/figures/colors.pdf |binary man/figures/colors.svg | 792 +++++++++++++++++++++++------------- src/RcppExports.cpp | 42 + src/canvas_chladni.cpp |only src/canvas_maze.cpp | 2 src/canvas_phyllotaxis.cpp |only src/canvas_recaman.cpp |only tests/testthat/test-all-paintings.R | 24 + 30 files changed, 824 insertions(+), 370 deletions(-)
Title: Calculate Results from WHO Model Disability Survey Data
Description: The Model Disability Survey (MDS) <https://www.who.int/disabilities/data/en/> is a World Health Organization (WHO) general population survey
instrument to assess the distribution of disability within a country or
region, grounded in the International Classification of Functioning,
Disability and Health <https://www.who.int/standards/classifications/international-classification-of-functioning-disability-and-health>. This package provides fit-for-purpose functions
for calculating and presenting the results from this survey, as used by
the WHO. The package primarily provides functions for implementing
Rasch Analysis (see Andrich (2011) <doi:10.1586/erp.11.59>) to
calculate a metric scale for disability.
Author: Lindsay Lee [aut, cre],
Carolina Fellinghauer [ctb],
World Health Organization [cph]
Maintainer: Lindsay Lee <lindsayevanslee@gmail.com>
Diff between whomds versions 1.0.0 dated 2021-11-23 and 1.0.1 dated 2021-11-26
whomds-1.0.0/whomds/LICENSE |only whomds-1.0.1/whomds/DESCRIPTION | 8 ++-- whomds-1.0.1/whomds/LICENSE.note |only whomds-1.0.1/whomds/MD5 | 31 ++++++++-------- whomds-1.0.1/whomds/NEWS.md |only whomds-1.0.1/whomds/README.md | 3 - whomds-1.0.1/whomds/build/partial.rdb |binary whomds-1.0.1/whomds/inst/doc/c2_getting_started_EN.R | 10 +---- whomds-1.0.1/whomds/inst/doc/c2_getting_started_EN.Rmd | 18 +-------- whomds-1.0.1/whomds/inst/doc/c2_getting_started_EN.html | 10 +---- whomds-1.0.1/whomds/inst/doc/c2_getting_started_ES.R | 10 +---- whomds-1.0.1/whomds/inst/doc/c2_getting_started_ES.Rmd | 18 +-------- whomds-1.0.1/whomds/inst/doc/c2_getting_started_ES.html | 10 +---- whomds-1.0.1/whomds/inst/doc/c6_after_rasch_EN.html | 2 - whomds-1.0.1/whomds/inst/doc/c6_after_rasch_ES.html | 2 - whomds-1.0.1/whomds/vignettes/Images/density.png |binary whomds-1.0.1/whomds/vignettes/c2_getting_started_EN.Rmd | 18 +-------- whomds-1.0.1/whomds/vignettes/c2_getting_started_ES.Rmd | 18 +-------- 18 files changed, 45 insertions(+), 113 deletions(-)
Title: Quantile Regression for Nonlinear Mixed-Effects Models
Description: Quantile regression (QR) for Nonlinear
Mixed-Effects Models via the asymmetric Laplace distribution (ALD).
It uses the Stochastic Approximation of the EM (SAEM) algorithm for
deriving exact maximum likelihood estimates and full inference results
for the fixed-effects and variance components.
It also provides prediction and graphical summaries for assessing the algorithm
convergence and fitting results.
Author: Christian E. Galarza <chedgala@espol.edu.ec> and Victor H. Lachos <hlachos@uconn.edu>
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>
Diff between qrNLMM versions 3.1 dated 2021-09-26 and 3.2 dated 2021-11-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/predict.QRNLMM.R | 4 ++-- build/partial.rdb |binary 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Geographically Weighted Partial Correlation Coefficient
Description: Implements a geographically weighted partial correlation which is an extension from gwss() function in the 'GWmodel' package (Percival and Tsutsumida (2017) <doi:10.1553/giscience2017_01_s36>).
Author: Narumasa Tsutsumida [aut, cre]
(<https://orcid.org/0000-0002-6333-0301>),
Joseph Percival [aut]
Maintainer: Narumasa Tsutsumida <rsnaru.jp@gmail.com>
Diff between GWpcor versions 0.1.6 dated 2021-01-10 and 0.1.7 dated 2021-11-26
DESCRIPTION | 9 ++++----- MD5 | 6 +++--- R/gwpcor.R | 2 +- README.md | 5 ++++- 4 files changed, 12 insertions(+), 10 deletions(-)
Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework
in R. CanvasXpress is a standalone JavaScript library for reproducible research
with complete tracking of data and end-user modifications stored in a single
PNG image that can be played back. See <https://www.canvasxpress.org> for more
information.
Author: Isaac Neuhaus [aut],
Connie Brett [aut, cre]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Diff between canvasXpress versions 1.35.0 dated 2021-06-25 and 1.37.0 dated 2021-11-26
canvasXpress-1.35.0/canvasXpress/tests/testthat/test-other-webshot-print.R |only canvasXpress-1.37.0/canvasXpress/DESCRIPTION | 13 canvasXpress-1.37.0/canvasXpress/MD5 | 64 +- canvasXpress-1.37.0/canvasXpress/NAMESPACE | 2 canvasXpress-1.37.0/canvasXpress/NEWS.md | 8 canvasXpress-1.37.0/canvasXpress/R/canvasXpress.R | 94 +-- canvasXpress-1.37.0/canvasXpress/R/html_functionality.R |only canvasXpress-1.37.0/canvasXpress/R/internal_functionality.R | 3 canvasXpress-1.37.0/canvasXpress/R/shiny_functionality.R |only canvasXpress-1.37.0/canvasXpress/README.md | 2 canvasXpress-1.37.0/canvasXpress/build/vignette.rds |binary canvasXpress-1.37.0/canvasXpress/inst/doc/additional_examples.Rmd | 2 canvasXpress-1.37.0/canvasXpress/inst/doc/additional_examples.html | 8 canvasXpress-1.37.0/canvasXpress/inst/doc/getting_started.Rmd | 4 canvasXpress-1.37.0/canvasXpress/inst/doc/getting_started.html | 8 canvasXpress-1.37.0/canvasXpress/inst/htmlwidgets/canvasXpress.js | 19 canvasXpress-1.37.0/canvasXpress/inst/htmlwidgets/canvasXpress.yaml | 2 canvasXpress-1.37.0/canvasXpress/inst/htmlwidgets/lib/canvasXpress/canvasXpress.css | 298 +++------- canvasXpress-1.37.0/canvasXpress/inst/htmlwidgets/lib/canvasXpress/canvasXpress.min.js | 27 canvasXpress-1.37.0/canvasXpress/inst/ui-examples/cX-function.R.gz |binary canvasXpress-1.37.0/canvasXpress/man/canvasXpress.Rd | 2 canvasXpress-1.37.0/canvasXpress/man/canvasXpress.json.Rd |only canvasXpress-1.37.0/canvasXpress/man/canvasXpressOutput.Rd | 4 canvasXpress-1.37.0/canvasXpress/man/cxHtmlPage.Rd |only canvasXpress-1.37.0/canvasXpress/man/renderCanvasXpress.Rd | 4 canvasXpress-1.37.0/canvasXpress/tests/testthat/test-other--BASE.R | 5 canvasXpress-1.37.0/canvasXpress/tests/testthat/test-other-cxHtmlPage.R |only canvasXpress-1.37.0/canvasXpress/tests/testthat/test-other-decorations.R | 114 ++- canvasXpress-1.37.0/canvasXpress/tests/testthat/test-other-selected-data-points.R | 3 canvasXpress-1.37.0/canvasXpress/tests/testthat/test-ui-contour.R | 4 canvasXpress-1.37.0/canvasXpress/tests/testthat/test-ui-dashboard.R | 4 canvasXpress-1.37.0/canvasXpress/tests/testthat/test-ui-genome.R | 6 canvasXpress-1.37.0/canvasXpress/tests/testthat/test-ui-meter.R | 8 canvasXpress-1.37.0/canvasXpress/tests/testthat/test-ui-scatter2D.R | 4 canvasXpress-1.37.0/canvasXpress/vignettes/additional_examples.Rmd | 2 canvasXpress-1.37.0/canvasXpress/vignettes/getting_started.Rmd | 4 36 files changed, 365 insertions(+), 353 deletions(-)
Title: Bayesian Inference of Non-Linear and Non-Gaussian State Space
Models
Description: Efficient methods for Bayesian inference of state space models
via particle Markov chain Monte Carlo (MCMC) and MCMC based on parallel
importance sampling type weighted estimators
(Vihola, Helske, and Franks, 2020, <doi:10.1111/sjos.12492>).
Gaussian, Poisson, binomial, negative binomial, and Gamma
observation densities and basic stochastic volatility models
with linear-Gaussian state dynamics,
as well as general non-linear Gaussian models and discretised
diffusion models are supported.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>),
Matti Vihola [aut] (<https://orcid.org/0000-0002-8041-7222>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between bssm versions 1.1.7-1 dated 2021-09-21 and 2.0.0 dated 2021-11-26
bssm-1.1.7-1/bssm/man/as_draws.Rd |only bssm-2.0.0/bssm/DESCRIPTION | 18 bssm-2.0.0/bssm/MD5 | 233 ++- bssm-2.0.0/bssm/NAMESPACE | 47 bssm-2.0.0/bssm/NEWS | 24 bssm-2.0.0/bssm/R/RcppExports.R | 48 bssm-2.0.0/bssm/R/approx.R | 16 bssm-2.0.0/bssm/R/as.data.frame.mcmc_output.R | 33 bssm-2.0.0/bssm/R/as_bssm.R | 27 bssm-2.0.0/bssm/R/as_draws.R | 105 + bssm-2.0.0/bssm/R/asymptotic_var.R |only bssm-2.0.0/bssm/R/bootstrap_filter.R | 47 bssm-2.0.0/bssm/R/bssm-package.R | 119 + bssm-2.0.0/bssm/R/check_arguments.R | 94 + bssm-2.0.0/bssm/R/check_diagnostics.R |only bssm-2.0.0/bssm/R/cpp_example_models.R | 235 +++ bssm-2.0.0/bssm/R/ekpf_filter.R | 43 bssm-2.0.0/bssm/R/expand_sample.R |only bssm-2.0.0/bssm/R/fitted.R |only bssm-2.0.0/bssm/R/importance_sample.R | 25 bssm-2.0.0/bssm/R/kfilter.R | 17 bssm-2.0.0/bssm/R/loglik.R | 46 bssm-2.0.0/bssm/R/model_type.R | 2 bssm-2.0.0/bssm/R/models.R | 251 ++-- bssm-2.0.0/bssm/R/particle_smoother.R | 77 - bssm-2.0.0/bssm/R/post_correction.R | 50 bssm-2.0.0/bssm/R/predict.R | 122 +- bssm-2.0.0/bssm/R/print_mcmc.R | 304 ----- bssm-2.0.0/bssm/R/priors.R | 41 bssm-2.0.0/bssm/R/run_mcmc.R | 288 +++- bssm-2.0.0/bssm/R/sim_smoother.R | 24 bssm-2.0.0/bssm/R/smoother.R | 19 bssm-2.0.0/bssm/R/srr-stats-standards.R |only bssm-2.0.0/bssm/R/summary.R |only bssm-2.0.0/bssm/README.md |only bssm-2.0.0/bssm/build/vignette.rds |binary bssm-2.0.0/bssm/data/datalist |only bssm-2.0.0/bssm/data/negbin_model.rda |only bssm-2.0.0/bssm/data/negbin_series.rda |only bssm-2.0.0/bssm/inst/CITATION | 43 bssm-2.0.0/bssm/inst/doc/bssm.Rmd | 7 bssm-2.0.0/bssm/inst/doc/bssm.html | 61 - bssm-2.0.0/bssm/inst/doc/growth_model.R | 14 bssm-2.0.0/bssm/inst/doc/growth_model.Rmd | 438 +++---- bssm-2.0.0/bssm/inst/doc/growth_model.html | 79 - bssm-2.0.0/bssm/inst/doc/psi_pf.R | 3 bssm-2.0.0/bssm/inst/doc/psi_pf.Rmd | 874 +++++++------- bssm-2.0.0/bssm/inst/doc/psi_pf.html | 2 bssm-2.0.0/bssm/inst/doc/sde_model.R | 7 bssm-2.0.0/bssm/inst/doc/sde_model.Rmd | 225 +-- bssm-2.0.0/bssm/inst/doc/sde_model.html | 13 bssm-2.0.0/bssm/man/ar1_lg.Rd | 23 bssm-2.0.0/bssm/man/ar1_ng.Rd | 39 bssm-2.0.0/bssm/man/as.data.frame.mcmc_output.Rd | 32 bssm-2.0.0/bssm/man/as_bssm.Rd | 13 bssm-2.0.0/bssm/man/as_draws-mcmc_output.Rd |only bssm-2.0.0/bssm/man/asymptotic_var.Rd |only bssm-2.0.0/bssm/man/bootstrap_filter.Rd | 24 bssm-2.0.0/bssm/man/bsm_lg.Rd | 76 - bssm-2.0.0/bssm/man/bsm_ng.Rd | 78 - bssm-2.0.0/bssm/man/bssm.Rd | 50 bssm-2.0.0/bssm/man/bssm_prior.Rd | 50 bssm-2.0.0/bssm/man/check_diagnostics.Rd |only bssm-2.0.0/bssm/man/cpp_example_model.Rd | 6 bssm-2.0.0/bssm/man/drownings.Rd | 6 bssm-2.0.0/bssm/man/ekf.Rd | 12 bssm-2.0.0/bssm/man/ekf_smoother.Rd | 14 bssm-2.0.0/bssm/man/ekpf_filter.Rd | 22 bssm-2.0.0/bssm/man/estimate_ess.Rd |only bssm-2.0.0/bssm/man/exchange.Rd | 6 bssm-2.0.0/bssm/man/expand_sample.Rd | 49 bssm-2.0.0/bssm/man/figures |only bssm-2.0.0/bssm/man/fitted.mcmc_output.Rd |only bssm-2.0.0/bssm/man/gaussian_approx.Rd | 34 bssm-2.0.0/bssm/man/iact.Rd |only bssm-2.0.0/bssm/man/importance_sample.Rd | 28 bssm-2.0.0/bssm/man/kfilter.Rd | 21 bssm-2.0.0/bssm/man/logLik_bssm.Rd | 66 - bssm-2.0.0/bssm/man/negbin_model.Rd |only bssm-2.0.0/bssm/man/negbin_series.Rd |only bssm-2.0.0/bssm/man/particle_smoother.Rd | 73 - bssm-2.0.0/bssm/man/poisson_series.Rd | 12 bssm-2.0.0/bssm/man/post_correct.Rd | 46 bssm-2.0.0/bssm/man/predict.mcmc_output.Rd | 59 bssm-2.0.0/bssm/man/print.mcmc_output.Rd | 8 bssm-2.0.0/bssm/man/run_mcmc.Rd | 193 +-- bssm-2.0.0/bssm/man/sim_smoother.Rd | 24 bssm-2.0.0/bssm/man/smoother.Rd | 16 bssm-2.0.0/bssm/man/ssm_mlg.Rd | 45 bssm-2.0.0/bssm/man/ssm_mng.Rd | 55 bssm-2.0.0/bssm/man/ssm_nlg.Rd | 34 bssm-2.0.0/bssm/man/ssm_sde.Rd | 15 bssm-2.0.0/bssm/man/ssm_ulg.Rd | 83 - bssm-2.0.0/bssm/man/ssm_ung.Rd | 61 - bssm-2.0.0/bssm/man/suggest_N.Rd | 38 bssm-2.0.0/bssm/man/summary.mcmc_output.Rd | 63 - bssm-2.0.0/bssm/man/svm.Rd | 38 bssm-2.0.0/bssm/man/ukf.Rd | 14 bssm-2.0.0/bssm/src/R_iact.cpp |only bssm-2.0.0/bssm/src/R_mcmc.cpp | 37 bssm-2.0.0/bssm/src/R_postcorrection.cpp | 4 bssm-2.0.0/bssm/src/R_sde.cpp | 12 bssm-2.0.0/bssm/src/RcppExports.cpp | 111 + bssm-2.0.0/bssm/src/approx_mcmc.cpp | 120 +- bssm-2.0.0/bssm/src/approx_mcmc.h | 9 bssm-2.0.0/bssm/src/mcmc.cpp | 162 ++ bssm-2.0.0/bssm/src/mcmc.h | 5 bssm-2.0.0/bssm/tests/testthat/test_approx.R | 29 bssm-2.0.0/bssm/tests/testthat/test_as_bssm.R | 25 bssm-2.0.0/bssm/tests/testthat/test_as_data_frame.R | 2 bssm-2.0.0/bssm/tests/testthat/test_basics.R | 16 bssm-2.0.0/bssm/tests/testthat/test_bootstrap_filter.R | 2 bssm-2.0.0/bssm/tests/testthat/test_ekpf.R | 3 bssm-2.0.0/bssm/tests/testthat/test_is.R | 39 bssm-2.0.0/bssm/tests/testthat/test_mcmc.R | 186 ++- bssm-2.0.0/bssm/tests/testthat/test_models.R | 9 bssm-2.0.0/bssm/tests/testthat/test_particle_smoother.R | 22 bssm-2.0.0/bssm/tests/testthat/test_post_correct.R | 19 bssm-2.0.0/bssm/tests/testthat/test_predict.R | 51 bssm-2.0.0/bssm/tests/testthat/test_priors.R |only bssm-2.0.0/bssm/tests/testthat/test_sde.R | 124 -- bssm-2.0.0/bssm/tests/testthat/test_sim_smoother.R | 7 bssm-2.0.0/bssm/vignettes/bssm.Rmd | 7 bssm-2.0.0/bssm/vignettes/bssm.bib | 957 ++++++++-------- bssm-2.0.0/bssm/vignettes/growth_model.Rmd | 438 +++---- bssm-2.0.0/bssm/vignettes/psi_pf.Rmd | 874 +++++++------- bssm-2.0.0/bssm/vignettes/sde_model.Rmd | 225 +-- 127 files changed, 5155 insertions(+), 3987 deletions(-)
Title: Command Line Optional and Positional Argument Parser
Description: A command line parser to
be used with Rscript to write "#!" shebang scripts that gracefully
accept positional and optional arguments and automatically generate usage.
Author: Trevor L Davis [aut, cre],
Allen Day [ctb] (Some documentation and examples ported from the getopt
package.),
Python Software Foundation [ctb] (Some documentation from the optparse
Python module.),
Paul Newell [ctb]
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between argparse versions 2.1.2 dated 2021-10-21 and 2.1.3 dated 2021-11-26
DESCRIPTION | 6 ++--- MD5 | 12 +++++------ NEWS.md | 7 ++++++ R/argparse.R | 2 - build/vignette.rds |binary inst/doc/argparse.html | 42 ++++++++++++++++++++--------------------- tests/testthat/test-argparse.R | 7 ++---- 7 files changed, 41 insertions(+), 35 deletions(-)
Title: Preprocessing of Structural MRI for Multiple Neurodegenerative
Diseases
Description: Preprocessing pipeline for normalizing and cleaning T1-weighted, T2-weighted and FLAIR MRI images coming from different sources, diseases, patients, scanners and sites.
Author: David Payares [aut, cre],
Jorge Mateu [ctb],
Wiebke Schick [ctb],
Nicholas J. Tustison [cph],
Brian B Avants [cph],
Philip A. Cook [cph],
Yuanjie Zheng [cph],
Alexander Egan [cph],
Paul A. Yushkevich [cph],
James C. Gee [cph],
M. Grossman [cph],
Jean-Philippe Fortin [cph],
Elizabeth M. Sweeney [cph],
John Muschelli [cph],
Ciprian M. Crainiceanu [cph],
Russell T. Shinohara [cph],
Yongyue Zhang [cph],
J. Michae Brady [cph],
Stephen Smith [cph]
Maintainer: David Payares <davidpayaresg@gmail.com>
Diff between neuronorm versions 1.0.0 dated 2021-07-20 and 1.0.1 dated 2021-11-26
DESCRIPTION | 10 +++++----- MD5 | 5 +++-- R/preprocessing.R | 6 +++--- README.md |only 4 files changed, 11 insertions(+), 10 deletions(-)
Title: Download, Slice, and Normalize GDELT V1 Data
Description: The GDELT V1 Event data set is over 37 GB now and growing 250 MB
a month. The number of source articles has increased over time and unevenly
across countries. This package makes it easy to download a subset of that
data, then normalize that data to facilitate valid time series analysis.
Author: Stephen R. Haptonstahl, Thomas Scherer, Timo Thoms, and Patrick Wheatley
Maintainer: Stephen R. Haptonstahl <srh@haptonstahl.org>
Diff between GDELTtools versions 1.2 dated 2014-02-27 and 1.5 dated 2021-11-26
GDELTtools-1.2/GDELTtools/man/GDELTtools-package.Rd |only GDELTtools-1.2/GDELTtools/man/GetGdelt.Rd |only GDELTtools-1.5/GDELTtools/DESCRIPTION | 24 +- GDELTtools-1.5/GDELTtools/MD5 | 37 +-- GDELTtools-1.5/GDELTtools/NAMESPACE | 5 GDELTtools-1.5/GDELTtools/R/DownloadGdelt.R | 59 +++--- GDELTtools-1.5/GDELTtools/R/FileInfo.R | 13 - GDELTtools-1.5/GDELTtools/R/FileListFromDates.R | 48 ++--- GDELTtools-1.5/GDELTtools/R/FilterGdeltDataframe.R | 53 +---- GDELTtools-1.5/GDELTtools/R/GdeltZipToDataframe.R | 20 +- GDELTtools-1.5/GDELTtools/R/GetAllOfGdelt.R | 80 ++++---- GDELTtools-1.5/GDELTtools/R/GetGdelt.R | 186 ++++++++++---------- GDELTtools-1.5/GDELTtools/R/GetSizeOfGDELT.R | 22 +- GDELTtools-1.5/GDELTtools/R/IsValidGDELT.R | 16 - GDELTtools-1.5/GDELTtools/R/ListAllGDELTFiles.R | 24 -- GDELTtools-1.5/GDELTtools/R/LocalVersusRemote.R | 10 - GDELTtools-1.5/GDELTtools/R/NormEventCounts.R | 169 +++++++++--------- GDELTtools-1.5/GDELTtools/R/StripTrailingSlashes.R | 2 GDELTtools-1.5/GDELTtools/man/GetAllOfGDELT.Rd | 79 ++++---- GDELTtools-1.5/GDELTtools/man/GetGDELT.Rd |only GDELTtools-1.5/GDELTtools/man/NormEventCounts.Rd | 98 +++++----- 21 files changed, 466 insertions(+), 479 deletions(-)
Title: Environmental Seismology Toolbox
Description: Environmental seismology is a scientific field that studies the
seismic signals, emitted by Earth surface processes. This package
provides all relevant functions to read/write seismic data files, prepare,
analyse and visualise seismic data, and generate reports of the processing
history.
Author: Michael Dietze [cre, aut, trl],
Christoph Burow [ctb],
Sophie Lagarde [ctb, trl]
Maintainer: Michael Dietze <mdietze@gfz-potsdam.de>
Diff between eseis versions 0.5.0 dated 2019-12-17 and 0.6.0 dated 2021-11-26
eseis-0.5.0/eseis/R/signal_stalta.R |only eseis-0.5.0/eseis/inst/extdata/2017/099/RUEG1.17.99.00.00.00.BHZ.SAC |only eseis-0.5.0/eseis/inst/extdata/2017/099/RUEG1.17.99.01.00.00.BHZ.SAC |only eseis-0.5.0/eseis/inst/extdata/2017/099/RUEG1.17.99.02.00.00.BHZ.SAC |only eseis-0.5.0/eseis/inst/extdata/2017/099/RUEG2.17.99.00.00.00.BHZ.SAC |only eseis-0.5.0/eseis/inst/extdata/2017/099/RUEG2.17.99.01.00.00.BHZ.SAC |only eseis-0.5.0/eseis/inst/extdata/2017/099/RUEG2.17.99.02.00.00.BHZ.SAC |only eseis-0.5.0/eseis/man/signal_stalta.Rd |only eseis-0.6.0/eseis/DESCRIPTION | 17 eseis-0.6.0/eseis/MD5 | 110 ++- eseis-0.6.0/eseis/NAMESPACE | 24 eseis-0.6.0/eseis/NEWS | 26 eseis-0.6.0/eseis/R/RcppExports.R | 8 eseis-0.6.0/eseis/R/aux_cubeinfo.R |only eseis-0.6.0/eseis/R/aux_eseisobspy.R | 2 eseis-0.6.0/eseis/R/aux_getevent.R | 156 +++-- eseis-0.6.0/eseis/R/aux_obspyeseis.R | 9 eseis-0.6.0/eseis/R/aux_organisecubefiles.R | 43 - eseis-0.6.0/eseis/R/aux_sonifysignal.R |only eseis-0.6.0/eseis/R/aux_stationinfofile.R | 20 eseis-0.6.0/eseis/R/eseis-package.R | 8 eseis-0.6.0/eseis/R/list_logger.R | 9 eseis-0.6.0/eseis/R/list_sensor.R | 43 + eseis-0.6.0/eseis/R/methods_eseis.R | 4 eseis-0.6.0/eseis/R/model_amplitude.R |only eseis-0.6.0/eseis/R/model_bedload.R | 79 +- eseis-0.6.0/eseis/R/model_turbulence.R | 2 eseis-0.6.0/eseis/R/pick_correlation.R |only eseis-0.6.0/eseis/R/pick_kurtosis.R |only eseis-0.6.0/eseis/R/pick_stalta.R |only eseis-0.6.0/eseis/R/plot_ppsd.R | 22 eseis-0.6.0/eseis/R/signal_detrend.R | 52 + eseis-0.6.0/eseis/R/signal_fill.R |only eseis-0.6.0/eseis/R/signal_filter.R | 26 eseis-0.6.0/eseis/R/signal_hvratio.R | 17 eseis-0.6.0/eseis/R/signal_stats.R |only eseis-0.6.0/eseis/R/signal_whiten.R | 12 eseis-0.6.0/eseis/R/spatial_amplitude.R | 286 +++++++--- eseis-0.6.0/eseis/R/spatial_migrate.R | 17 eseis-0.6.0/eseis/R/spatial_track.R |only eseis-0.6.0/eseis/inst/extdata/2017/099/RUEG1.17.099.00.00.00.BHZ.SAC |only eseis-0.6.0/eseis/inst/extdata/2017/099/RUEG1.17.099.01.00.00.BHZ.SAC |only eseis-0.6.0/eseis/inst/extdata/2017/099/RUEG1.17.099.02.00.00.BHZ.SAC |only eseis-0.6.0/eseis/inst/extdata/2017/099/RUEG2.17.099.00.00.00.BHZ.SAC |only eseis-0.6.0/eseis/inst/extdata/2017/099/RUEG2.17.099.01.00.00.BHZ.SAC |only eseis-0.6.0/eseis/inst/extdata/2017/099/RUEG2.17.099.02.00.00.BHZ.SAC |only eseis-0.6.0/eseis/inst/shiny/explore |only eseis-0.6.0/eseis/man/aux_cubeinfo.Rd |only eseis-0.6.0/eseis/man/aux_getevent.Rd | 11 eseis-0.6.0/eseis/man/aux_obspyeseis.Rd | 10 eseis-0.6.0/eseis/man/aux_organisecubefiles.Rd | 10 eseis-0.6.0/eseis/man/aux_sonifysignal.Rd |only eseis-0.6.0/eseis/man/aux_stationinfofile.Rd | 2 eseis-0.6.0/eseis/man/earthquake.Rd | 8 eseis-0.6.0/eseis/man/eseis.Rd | 2 eseis-0.6.0/eseis/man/model_amplitude.Rd |only eseis-0.6.0/eseis/man/model_bedload.Rd | 13 eseis-0.6.0/eseis/man/pick_correlation.Rd |only eseis-0.6.0/eseis/man/pick_kurtosis.Rd |only eseis-0.6.0/eseis/man/pick_stalta.Rd |only eseis-0.6.0/eseis/man/rockfall.Rd | 14 eseis-0.6.0/eseis/man/signal_detrend.Rd | 13 eseis-0.6.0/eseis/man/signal_fill.Rd |only eseis-0.6.0/eseis/man/signal_filter.Rd | 7 eseis-0.6.0/eseis/man/signal_hvratio.Rd | 16 eseis-0.6.0/eseis/man/signal_stats.Rd |only eseis-0.6.0/eseis/man/spatial_amplitude.Rd | 101 ++- eseis-0.6.0/eseis/man/spatial_migrate.Rd | 18 eseis-0.6.0/eseis/man/spatial_track.Rd |only eseis-0.6.0/eseis/src/RcppExports.cpp | 29 + eseis-0.6.0/eseis/src/correlation_event.cpp |only eseis-0.6.0/eseis/src/eseis_init.c | 4 eseis-0.6.0/eseis/src/kurtosis_event.cpp |only 73 files changed, 927 insertions(+), 323 deletions(-)
Title: Methods for Joint Dimension Reduction and Clustering
Description: A class of methods that combine dimension reduction and clustering of continuous, categorical or mixed-type data (Markos, Iodice D'Enza and van de Velden 2019; <DOI:10.18637/jss.v091.i10>). For continuous data, the package contains implementations of factorial K-means (Vichi and Kiers 2001; <DOI:10.1016/S0167-9473(00)00064-5>) and reduced K-means (De Soete and Carroll 1994; <DOI:10.1007/978-3-642-51175-2_24>); both methods that combine principal component analysis with K-means clustering. For categorical data, the package provides MCA K-means (Hwang, Dillon and Takane 2006; <DOI:10.1007/s11336-004-1173-x>), i-FCB (Iodice D'Enza and Palumbo 2013, <DOI:10.1007/s00180-012-0329-x>) and Cluster Correspondence Analysis (van de Velden, Iodice D'Enza and Palumbo 2017; <DOI:10.1007/s11336-016-9514-0>), which combine multiple correspondence analysis with K-means. For mixed-type data, it provides mixed Reduced K-means and mixed Factorial K-means (van de Velden, Iodice D'Enza and Markos 2019; <DOI:10.1002/wics.1456>), which combine PCA for mixed-type data with K-means.
Author: Angelos Markos [aut, cre], Alfonso Iodice D'Enza [aut], Michel van de Velden [aut]
Maintainer: Angelos Markos <amarkos@gmail.com>
Diff between clustrd versions 1.3.8 dated 2021-11-18 and 1.3.9 dated 2021-11-26
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ R/boot_clusmca.R | 4 ++-- R/boot_cluspca.R | 6 +++--- R/boot_cluspcamix.R | 11 ++++++----- R/clu_means.R | 7 +++---- R/cluspca.R | 16 ++++++++-------- R/cluspcamix.R | 31 ++++++++++++++++++++----------- R/global_bootclus.R | 6 +++--- R/local_bootclus.R | 22 ++++++++++++---------- R/plot.clusmca.R | 1 - R/plot.cluspcamix.R | 16 ++++++++-------- man/mybond.Rd | 2 +- 13 files changed, 82 insertions(+), 72 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-31 2.0.0
2016-10-05 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-11 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-11 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-09 2.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-11 0.4.1