Title: Feature Extraction from Biological Sequences
Description: Extracts features from biological sequences. It contains most features which are presented in related work and also includes features which have never been introduced before. It extracts numerous features from nucleotide and peptide sequences. Each feature converts the input sequences to discrete numbers in order to use them as predictors in machine learning models. There are many features and information which are hidden inside a sequence. Utilizing the package, users can convert biological sequences to discrete models based on chosen properties. References: 'iLearn' 'Z. Chen et al.' (2019) <DOI:10.1093/bib/bbz041>. 'iFeature' 'Z. Chen et al.' (2018) <DOI:10.1093/bioinformatics/bty140>. <https://CRAN.R-project.org/package=rDNAse>. 'PseKRAAC' 'Y. Zuo et al.' 'PseKRAAC: a flexible web server for generating pseudo K-tuple reduced amino acids composition' (2017) <DOI:10.1093/bioinformatics/btw564>. 'iDNA6mA-PseKNC' 'P. Feng et al.' 'iDNA6mA-PseKNC: Identifying DNA N6-methyladenosine sites by incorporating nucleotide physicochemical properties into PseKNC' (2019) <DOI:10.1016/j.ygeno.2018.01.005>. 'I. Dubchak et al.' 'Prediction of protein folding class using global description of amino acid sequence' (1995) <DOI:10.1073/pnas.92.19.8700>. 'W. Chen et al.' 'Identification and analysis of the N6-methyladenosine in the Saccharomyces cerevisiae transcriptome' (2015) <DOI:10.1038/srep13859>.
Author: Sare Amerifar
Maintainer: Sare Amerifar <sare.ameri.01@gmail.com>
Diff between ftrCOOL versions 1.1.2 dated 2021-01-19 and 2.0.0 dated 2021-11-29
ftrCOOL-1.1.2/ftrCOOL/inst/extdata/Carica_papaya101RNATotal.txt |only ftrCOOL-1.1.2/ftrCOOL/inst/extdata/eiip.csv |only ftrCOOL-2.0.0/ftrCOOL/DESCRIPTION | 9 ftrCOOL-2.0.0/ftrCOOL/MD5 | 257 ftrCOOL-2.0.0/ftrCOOL/NAMESPACE | 44 ftrCOOL-2.0.0/ftrCOOL/NEWS.md | 60 ftrCOOL-2.0.0/ftrCOOL/R/AA2Binary.R | 5 ftrCOOL-2.0.0/ftrCOOL/R/AESNN3.R |only ftrCOOL-2.0.0/ftrCOOL/R/APAAC.R | 2 ftrCOOL-2.0.0/ftrCOOL/R/ASDC.R |only ftrCOOL-2.0.0/ftrCOOL/R/ASDC_DNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/ASDC_RNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/AutoCorDiNUC_DNA.R | 6 ftrCOOL-2.0.0/ftrCOOL/R/AutoCorDiNUC_RNA.R | 6 ftrCOOL-2.0.0/ftrCOOL/R/AutoCorTriNUC_DNA.R | 4 ftrCOOL-2.0.0/ftrCOOL/R/CkSGAApair.R | 66 ftrCOOL-2.0.0/ftrCOOL/R/CkSNUCpair_DNA.R | 3 ftrCOOL-2.0.0/ftrCOOL/R/CkSNUCpair_RNA.R | 4 ftrCOOL-2.0.0/ftrCOOL/R/DDE.R | 3 ftrCOOL-2.0.0/ftrCOOL/R/DPCP_DNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/DPCP_RNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/DiNUC2Binary_DNA.R | 19 ftrCOOL-2.0.0/ftrCOOL/R/DiNUC2Binary_RNA.R | 19 ftrCOOL-2.0.0/ftrCOOL/R/DiNUCindex_DNA.R | 2 ftrCOOL-2.0.0/ftrCOOL/R/DiNUCindex_RNA.R | 14 ftrCOOL-2.0.0/ftrCOOL/R/DisorderB.R | 6 ftrCOOL-2.0.0/ftrCOOL/R/DistancePair.R |only ftrCOOL-2.0.0/ftrCOOL/R/ENUComposition_DNA.R | 2 ftrCOOL-2.0.0/ftrCOOL/R/ENUComposition_RNA.R | 2 ftrCOOL-2.0.0/ftrCOOL/R/KNNPeptide.R | 2 ftrCOOL-2.0.0/ftrCOOL/R/KNNProtein.R | 6 ftrCOOL-2.0.0/ftrCOOL/R/KNN_DNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/KNN_RNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/MMI_DNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/MMI_RNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/Mismatch_DNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/Mismatch_RNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/NCP_DNA.R | 4 ftrCOOL-2.0.0/ftrCOOL/R/NCP_RNA.R | 10 ftrCOOL-2.0.0/ftrCOOL/R/NUC2Binary_DNA.R | 4 ftrCOOL-2.0.0/ftrCOOL/R/NUC2Binary_RNA.R | 4 ftrCOOL-2.0.0/ftrCOOL/R/OPF_10bit.R |only ftrCOOL-2.0.0/ftrCOOL/R/OPF_7bit_T1.R |only ftrCOOL-2.0.0/ftrCOOL/R/OPF_7bit_T2.R |only ftrCOOL-2.0.0/ftrCOOL/R/OPF_7bit_T3.R |only ftrCOOL-2.0.0/ftrCOOL/R/PS2_DNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/PS2_RNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/PS3_DNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/PS3_RNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/PS4_DNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/PS4_RNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/PSEAAC.R | 2 ftrCOOL-2.0.0/ftrCOOL/R/PSEkNUCTri_DNA.R | 2 ftrCOOL-2.0.0/ftrCOOL/R/PSTNPds.R | 13 ftrCOOL-2.0.0/ftrCOOL/R/PSTNPss_DNA.R | 8 ftrCOOL-2.0.0/ftrCOOL/R/PSTNPss_RNA.R | 6 ftrCOOL-2.0.0/ftrCOOL/R/SSEB.R | 4 ftrCOOL-2.0.0/ftrCOOL/R/TPCP_DNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/TriNUCindex_DNA.R | 2 ftrCOOL-2.0.0/ftrCOOL/R/Zcurve12bit_DNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/Zcurve12bit_RNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/Zcurve144bit_DNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/Zcurve144bit_RNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/Zcurve36bit_DNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/Zcurve36bit_RNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/Zcurve48bit_DNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/Zcurve48bit_RNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/Zcurve9bit_DNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/Zcurve9bit_RNA.R |only ftrCOOL-2.0.0/ftrCOOL/R/binary_3bit_T1.R |only ftrCOOL-2.0.0/ftrCOOL/R/binary_3bit_T2.R |only ftrCOOL-2.0.0/ftrCOOL/R/binary_3bit_T3.R |only ftrCOOL-2.0.0/ftrCOOL/R/binary_3bit_T4.R |only ftrCOOL-2.0.0/ftrCOOL/R/binary_3bit_T5.R |only ftrCOOL-2.0.0/ftrCOOL/R/binary_3bit_T6.R |only ftrCOOL-2.0.0/ftrCOOL/R/binary_3bit_T7.R |only ftrCOOL-2.0.0/ftrCOOL/R/binary_5bit_T1.R |only ftrCOOL-2.0.0/ftrCOOL/R/binary_5bit_T2.R |only ftrCOOL-2.0.0/ftrCOOL/R/binary_6bit.R |only ftrCOOL-2.0.0/ftrCOOL/R/conjointTrKS.R | 2 ftrCOOL-2.0.0/ftrCOOL/R/kAAComposition.R | 2 ftrCOOL-2.0.0/ftrCOOL/R/kGAAComposition.R | 16 ftrCOOL-2.0.0/ftrCOOL/R/kNUComposition_DNA.R | 4 ftrCOOL-2.0.0/ftrCOOL/R/kNUComposition_RNA.R | 4 ftrCOOL-2.0.0/ftrCOOL/inst/extdata/AESNN3.csv |only ftrCOOL-2.0.0/ftrCOOL/inst/extdata/Carica_papaya101RNA.txt | 2976 ------- ftrCOOL-2.0.0/ftrCOOL/inst/extdata/DNA_testing.txt | 1448 --- ftrCOOL-2.0.0/ftrCOOL/inst/extdata/neg2RNA.txt | 1872 ---- ftrCOOL-2.0.0/ftrCOOL/inst/extdata/neg2RNA51.txt |only ftrCOOL-2.0.0/ftrCOOL/inst/extdata/negDNA.txt | 3946 --------- ftrCOOL-2.0.0/ftrCOOL/inst/extdata/negData51.txt |only ftrCOOL-2.0.0/ftrCOOL/inst/extdata/pos2RNA.txt | 1921 ---- ftrCOOL-2.0.0/ftrCOOL/inst/extdata/pos2RNA51.txt |only ftrCOOL-2.0.0/ftrCOOL/inst/extdata/posDNA.txt | 3998 ---------- ftrCOOL-2.0.0/ftrCOOL/inst/extdata/posData51.txt |only ftrCOOL-2.0.0/ftrCOOL/inst/extdata/protein.fasta | 3 ftrCOOL-2.0.0/ftrCOOL/inst/extdata/testData51.txt |only ftrCOOL-2.0.0/ftrCOOL/inst/extdata/testSeq2RNA.txt | 2430 ------ ftrCOOL-2.0.0/ftrCOOL/inst/extdata/testSeq2RNA51.txt |only ftrCOOL-2.0.0/ftrCOOL/man/AA2Binary.Rd | 4 ftrCOOL-2.0.0/ftrCOOL/man/AESNN3.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/APAAC.Rd | 2 ftrCOOL-2.0.0/ftrCOOL/man/ASDC.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/ASDC_DNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/ASDC_RNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/AutoCorDiNUC_DNA.Rd | 4 ftrCOOL-2.0.0/ftrCOOL/man/AutoCorDiNUC_RNA.Rd | 4 ftrCOOL-2.0.0/ftrCOOL/man/AutoCorTriNUC_DNA.Rd | 2 ftrCOOL-2.0.0/ftrCOOL/man/CkSGAApair.Rd | 2 ftrCOOL-2.0.0/ftrCOOL/man/CkSNUCpair_RNA.Rd | 4 ftrCOOL-2.0.0/ftrCOOL/man/DPCP_DNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/DPCP_RNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/DiNUC2Binary_DNA.Rd | 8 ftrCOOL-2.0.0/ftrCOOL/man/DiNUC2Binary_RNA.Rd | 8 ftrCOOL-2.0.0/ftrCOOL/man/DiNUCindex_DNA.Rd | 2 ftrCOOL-2.0.0/ftrCOOL/man/DiNUCindex_RNA.Rd | 12 ftrCOOL-2.0.0/ftrCOOL/man/DisorderB.Rd | 6 ftrCOOL-2.0.0/ftrCOOL/man/DistancePair.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/ENUComposition_DNA.Rd | 2 ftrCOOL-2.0.0/ftrCOOL/man/ENUComposition_RNA.Rd | 2 ftrCOOL-2.0.0/ftrCOOL/man/KNNPeptide.Rd | 2 ftrCOOL-2.0.0/ftrCOOL/man/KNNProtein.Rd | 6 ftrCOOL-2.0.0/ftrCOOL/man/KNN_DNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/KNN_RNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/MMI_DNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/MMI_RNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/Mismatch_DNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/Mismatch_RNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/NCP_DNA.Rd | 4 ftrCOOL-2.0.0/ftrCOOL/man/NCP_RNA.Rd | 10 ftrCOOL-2.0.0/ftrCOOL/man/NUC2Binary_DNA.Rd | 4 ftrCOOL-2.0.0/ftrCOOL/man/NUC2Binary_RNA.Rd | 4 ftrCOOL-2.0.0/ftrCOOL/man/OPF_10bit.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/OPF_7bit_T1.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/OPF_7bit_T2.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/OPF_7bit_T3.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/PS2_DNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/PS2_RNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/PS3_DNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/PS3_RNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/PS4_DNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/PS4_RNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/PSEAAC.Rd | 2 ftrCOOL-2.0.0/ftrCOOL/man/PSEkNUCTri_DNA.Rd | 2 ftrCOOL-2.0.0/ftrCOOL/man/PSTNPds.Rd | 13 ftrCOOL-2.0.0/ftrCOOL/man/PSTNPss_DNA.Rd | 10 ftrCOOL-2.0.0/ftrCOOL/man/PSTNPss_RNA.Rd | 8 ftrCOOL-2.0.0/ftrCOOL/man/SSEB.Rd | 4 ftrCOOL-2.0.0/ftrCOOL/man/TPCP_DNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/TriNUCindex_DNA.Rd | 2 ftrCOOL-2.0.0/ftrCOOL/man/Zcurve12bit_DNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/Zcurve12bit_RNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/Zcurve144bit_DNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/Zcurve144bit_RNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/Zcurve36bit_DNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/Zcurve36bit_RNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/Zcurve48bit_DNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/Zcurve48bit_RNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/Zcurve9bit_DNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/Zcurve9bit_RNA.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/binary_3bit_T1.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/binary_3bit_T2.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/binary_3bit_T3.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/binary_3bit_T4.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/binary_3bit_T5.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/binary_3bit_T6.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/binary_3bit_T7.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/binary_5bit_T1.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/binary_5bit_T2.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/binary_6bit.Rd |only ftrCOOL-2.0.0/ftrCOOL/man/conjointTriadKS.Rd | 2 ftrCOOL-2.0.0/ftrCOOL/man/kNUComposition_DNA.Rd | 2 ftrCOOL-2.0.0/ftrCOOL/man/kNUComposition_RNA.Rd | 2 ftrCOOL-2.0.0/ftrCOOL/tests/testthat/test_AESNN3.R |only ftrCOOL-2.0.0/ftrCOOL/tests/testthat/test_ASDC.R |only ftrCOOL-2.0.0/ftrCOOL/tests/testthat/test_DistancePaire.R |only ftrCOOL-2.0.0/ftrCOOL/tests/testthat/test_KNNnucleotide.R |only ftrCOOL-2.0.0/ftrCOOL/tests/testthat/test_MMI.R |only ftrCOOL-2.0.0/ftrCOOL/tests/testthat/test_Mismatch.R |only ftrCOOL-2.0.0/ftrCOOL/tests/testthat/test_OPF.R |only ftrCOOL-2.0.0/ftrCOOL/tests/testthat/test_PS.R |only ftrCOOL-2.0.0/ftrCOOL/tests/testthat/test_binarybit.R |only ftrCOOL-2.0.0/ftrCOOL/tests/testthat/test_zcurves.R |only 183 files changed, 478 insertions(+), 18883 deletions(-)
Title: Causal Inference for Multiple Treatments with a Binary Outcome
Description: Different methods to conduct causal inference for multiple treatments with a binary outcome, including regression adjustment, vector matching, Bayesian additive regression trees, targeted maximum likelihood and inverse probability of treatment weighting using different generalized propensity score models such as multinomial logistic regression, generalized boosted models and super learner. For more details, see the paper by Hu et al. <doi:10.1177/0962280220921909>.
Author: Liangyuan Hu [aut],
Chenyang Gu [aut],
Michael Lopez [aut],
Jiayi Ji [aut, cre]
Maintainer: Jiayi Ji <Jiayi.Ji@mountsinai.org>
Diff between CIMTx versions 1.0.0 dated 2021-10-20 and 1.1.0 dated 2021-11-29
CIMTx-1.0.0/CIMTx/R/plot_boxplot.R |only CIMTx-1.0.0/CIMTx/R/plot_contour.R |only CIMTx-1.0.0/CIMTx/man/ce_estimate_bart_ate.Rd |only CIMTx-1.0.0/CIMTx/man/ce_estimate_bart_att.Rd |only CIMTx-1.0.0/CIMTx/man/ce_estimate_iptw_ate.Rd |only CIMTx-1.0.0/CIMTx/man/ce_estimate_iptw_att.Rd |only CIMTx-1.0.0/CIMTx/man/ce_estimate_ra_ate.Rd |only CIMTx-1.0.0/CIMTx/man/ce_estimate_ra_att.Rd |only CIMTx-1.0.0/CIMTx/man/ce_estimate_rams_ate.Rd |only CIMTx-1.0.0/CIMTx/man/ce_estimate_rams_ate_boot.Rd |only CIMTx-1.0.0/CIMTx/man/ce_estimate_rams_att.Rd |only CIMTx-1.0.0/CIMTx/man/ce_estimate_tmle_ate.Rd |only CIMTx-1.0.0/CIMTx/man/ce_estimate_vm_att.Rd |only CIMTx-1.0.0/CIMTx/man/covariate_overlap.Rd |only CIMTx-1.0.0/CIMTx/man/logit.Rd |only CIMTx-1.0.0/CIMTx/man/plot_boxplot.Rd |only CIMTx-1.0.0/CIMTx/man/plot_contour.Rd |only CIMTx-1.0.0/CIMTx/man/posterior_summary.Rd |only CIMTx-1.0.0/CIMTx/man/trunc_fun.Rd |only CIMTx-1.1.0/CIMTx/DESCRIPTION | 18 +- CIMTx-1.1.0/CIMTx/MD5 | 85 ++++------ CIMTx-1.1.0/CIMTx/NAMESPACE | 24 --- CIMTx-1.1.0/CIMTx/R/ce_estimate.R | 87 ++++++---- CIMTx-1.1.0/CIMTx/R/ce_estimate_bart_ate.R | 150 +++++++++--------- CIMTx-1.1.0/CIMTx/R/ce_estimate_bart_att.R | 127 +++++++-------- CIMTx-1.1.0/CIMTx/R/ce_estimate_iptw_ate.R | 80 ++-------- CIMTx-1.1.0/CIMTx/R/ce_estimate_iptw_ate_boot.R | 117 ++++++++------ CIMTx-1.1.0/CIMTx/R/ce_estimate_iptw_att.R | 74 ++------- CIMTx-1.1.0/CIMTx/R/ce_estimate_iptw_att_boot.R | 106 +++++++------ CIMTx-1.1.0/CIMTx/R/ce_estimate_ra_ate.R | 100 ++---------- CIMTx-1.1.0/CIMTx/R/ce_estimate_ra_att.R | 101 ++---------- CIMTx-1.1.0/CIMTx/R/ce_estimate_rams_ate.R | 70 +------- CIMTx-1.1.0/CIMTx/R/ce_estimate_rams_ate_boot.R | 152 +++++++------------ CIMTx-1.1.0/CIMTx/R/ce_estimate_rams_att.R | 66 +------- CIMTx-1.1.0/CIMTx/R/ce_estimate_rams_att_boot.R | 108 +++++++------ CIMTx-1.1.0/CIMTx/R/ce_estimate_tmle_ate.R | 65 -------- CIMTx-1.1.0/CIMTx/R/ce_estimate_vm_att.R | 46 ----- CIMTx-1.1.0/CIMTx/R/ce_estimate_vm_att_boot.R | 106 +++++++------ CIMTx-1.1.0/CIMTx/R/covariate_overlap.R | 16 -- CIMTx-1.1.0/CIMTx/R/data_sim.R | 42 ++--- CIMTx-1.1.0/CIMTx/R/logit.R | 10 - CIMTx-1.1.0/CIMTx/R/plot.CIMTx_IPTW.R |only CIMTx-1.1.0/CIMTx/R/plot.CIMTx_sa_grid.R |only CIMTx-1.1.0/CIMTx/R/posterior_summary.R | 13 - CIMTx-1.1.0/CIMTx/R/sa.R | 73 ++++----- CIMTx-1.1.0/CIMTx/R/summary.CIMTx_ATE_posterior.R |only CIMTx-1.1.0/CIMTx/R/summary.CIMTx_ATE_sa.R |only CIMTx-1.1.0/CIMTx/R/summary.CIMTx_ATT_posterior.R |only CIMTx-1.1.0/CIMTx/R/summary.CIMTx_ATT_sa.R |only CIMTx-1.1.0/CIMTx/R/trunc_fun.R | 11 - CIMTx-1.1.0/CIMTx/man/ce_estimate.Rd | 49 +++--- CIMTx-1.1.0/CIMTx/man/data_sim.Rd | 31 ++- CIMTx-1.1.0/CIMTx/man/plot.CIMTx_IPTW.Rd |only CIMTx-1.1.0/CIMTx/man/plot.CIMTx_sa_grid.Rd |only CIMTx-1.1.0/CIMTx/man/sa.Rd | 30 ++- CIMTx-1.1.0/CIMTx/man/summary.CIMTx_ATE_posterior.Rd |only CIMTx-1.1.0/CIMTx/man/summary.CIMTx_ATE_sa.Rd |only CIMTx-1.1.0/CIMTx/man/summary.CIMTx_ATT_posterior.Rd |only CIMTx-1.1.0/CIMTx/man/summary.CIMTx_ATT_sa.Rd |only 59 files changed, 791 insertions(+), 1166 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cre, cph],
Paul Buerkner [ctb],
Maxime Herve [ctb],
Jonathon Love [ctb],
Fernando Miguez [ctb],
Hannes Riebl [ctb],
Henrik Singmann [ctb]
Maintainer: Russell V. Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.7.0 dated 2021-09-29 and 1.7.1-1 dated 2021-11-29
DESCRIPTION | 10 +- MD5 | 88 ++++++++++---------- NEWS.md | 20 ++++ R/0nly-internal.R | 13 ++ R/cld-emm.R | 4 R/contrast.R | 6 - R/emm-list.R | 2 R/emmeans.R | 6 - R/emmip.R | 6 - R/gam-support.R | 51 +++++++++++ R/helpers.R | 19 ++-- R/nested.R | 2 R/nonlin-support.R | 51 +++++++++++ R/ordinal-support.R | 2 R/plot.emm.R | 18 +++- R/summary.R | 29 ++++-- README.md | 45 +++++++--- inst/doc/FAQs.Rmd | 21 ++++ inst/doc/FAQs.html | 18 +++- inst/doc/basics.html | 4 inst/doc/comparisons.html | 12 +- inst/doc/confidence-intervals.html | 16 +-- inst/doc/interactions.html | 18 ++-- inst/doc/messy-data.html | 4 inst/doc/models.Rmd | 16 ++- inst/doc/models.html | 29 ++++-- inst/doc/predictions.html | 4 inst/doc/sophisticated.html | 4 inst/doc/transformations.R | 11 ++ inst/doc/transformations.Rmd | 22 ++++- inst/doc/transformations.html | 29 +++++- inst/doc/utilities.html | 4 inst/doc/vignette-topics.Rmd | 5 + inst/doc/vignette-topics.html | 9 +- inst/doc/xplanations.html | 15 +-- inst/doc/xtending.html | 8 - man/CLD.emmGrid.Rd | 150 +++++++++++++++++----------------- man/mvcontrast.Rd | 162 ++++++++++++++++++------------------- man/plot.Rd | 5 + man/summary.emmGrid.Rd | 18 ++-- tests/testthat/test-emmeans.R | 1 vignettes/FAQs.Rmd | 21 ++++ vignettes/models.Rmd | 16 ++- vignettes/transformations.Rmd | 22 ++++- vignettes/vignette-topics.Rmd | 5 + 45 files changed, 688 insertions(+), 333 deletions(-)
More information about simulariatools at CRAN
Permanent link
Title: Tools to Transform and Query Data with Apache Drill
Description: Apache Drill is a low-latency distributed query engine designed to enable
data exploration and analysis on both relational and non-relational data stores,
scaling to petabytes of data. Methods are provided that enable working with Apache
Drill instances via the REST API, DBI methods
and using 'dplyr'/'dbplyr' idioms. Helper functions are included to facilitate
using official Drill Docker images/containers.
Author: Bob Rudis [aut, cre] (<https://orcid.org/0000-0001-5670-2640>),
Edward Visel [ctb],
Andy Hine [ctb],
Scott Came [ctb],
David Severski [ctb] (<https://orcid.org/0000-0001-7867-0459>),
James Lamb [ctb]
Maintainer: Bob Rudis <bob@rud.is>
Diff between sergeant versions 0.9.0 dated 2020-06-01 and 0.9.1 dated 2021-11-29
DESCRIPTION | 13 ++++++------- MD5 | 22 ++++++++++++---------- NAMESPACE | 9 ++++++++- R/dbi.r | 10 +++++++--- R/dplyr.r | 4 +++- R/query.r | 3 ++- R/sergeant-package.r | 9 +++------ R/utils-pipe.R |only README.md | 7 +------ inst/tinytest/test-dbitest.R | 1 + inst/tinytest/test-sergeant.R | 5 ++--- man/pipe.Rd |only man/sergeant-exports.Rd | 1 - 13 files changed, 45 insertions(+), 39 deletions(-)
Title: A Simple Interface to the US EPA Air Quality System Data Mart
API
Description: Retrieve air monitoring data and associated metadata from the US
Environmental Protection Agency's Air Quality System service using functions.
See <https://aqs.epa.gov/aqsweb/documents/data_api.html> for details about
the US EPA Data Mart API.
Author: Clinton Mccrowey [cre, aut] (United States Enviornmental Protection
Agency Region 3 Air and Radiation Division),
Timothy Sharac [ctb, rev] (United States Enviornmental Protection
Agency),
Nick Mangus [rev] (United States Enviornmental Protection Agency),
Doug Jager [ctb, rev] (United States Enviornmental Protection Agency),
Ryan Brown [ctb, rev] (United States Enviornmental Protection Agency),
Daniel Garver [ctb, rev] (United States Enviornmental Protection
Agency),
Benjamin Wells [ctb, rev] (United States Enviornmental Protection
Agency),
Hayley Brittingham [crr, ctr] (Neptune and Company)
Maintainer: Clinton Mccrowey <mccrowey.clinton@epa.gov>
Diff between RAQSAPI versions 2.0.1 dated 2021-03-31 and 2.0.2 dated 2021-11-29
RAQSAPI-2.0.1/RAQSAPI/tests/README.Rmd |only RAQSAPI-2.0.1/RAQSAPI/tests/testthat/test-RAQSAPlistfunctions.R |only RAQSAPI-2.0.2/RAQSAPI/DESCRIPTION | 26 RAQSAPI-2.0.2/RAQSAPI/MD5 | 250 RAQSAPI-2.0.2/RAQSAPI/NAMESPACE | 22 RAQSAPI-2.0.2/RAQSAPI/NEWS.md | 25 RAQSAPI-2.0.2/RAQSAPI/R/AQSAPI_helperfunctions.R | 633 RAQSAPI-2.0.2/RAQSAPI/R/RAQSAPI-package.R | 3 RAQSAPI-2.0.2/RAQSAPI/R/RAQSAPIlistfunctions.R | 886 RAQSAPI-2.0.2/RAQSAPI/R/bybox.R | 636 RAQSAPI-2.0.2/RAQSAPI/R/bycbsa.R | 588 RAQSAPI-2.0.2/RAQSAPI/R/bycounty.R | 1626 RAQSAPI-2.0.2/RAQSAPI/R/byma.R | 1026 RAQSAPI-2.0.2/RAQSAPI/R/bypqao.R | 897 RAQSAPI-2.0.2/RAQSAPI/R/bysite.R | 1775 RAQSAPI-2.0.2/RAQSAPI/R/bystate.R | 1586 RAQSAPI-2.0.2/RAQSAPI/R/setupfunctions.R | 167 RAQSAPI-2.0.2/RAQSAPI/R/zzz.R | 25 RAQSAPI-2.0.2/RAQSAPI/build/RAQSAPI.pdf |30564 ++++++---- RAQSAPI-2.0.2/RAQSAPI/build/vignette.rds |binary RAQSAPI-2.0.2/RAQSAPI/inst/CITATION |only RAQSAPI-2.0.2/RAQSAPI/inst/WORDLIST | 257 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RAQSAPI-2.0.2/RAQSAPI/inst/doc/Troubleshooting.html | 3 RAQSAPI-2.0.2/RAQSAPI/inst/doc/UsingRAQSAPI.Rmd | 174 RAQSAPI-2.0.2/RAQSAPI/inst/doc/UsingRAQSAPI.html | 42 RAQSAPI-2.0.2/RAQSAPI/man/aqs_annualsummary_by_box.Rd | 5 RAQSAPI-2.0.2/RAQSAPI/man/aqs_annualsummary_by_cbsa.Rd | 5 RAQSAPI-2.0.2/RAQSAPI/man/aqs_annualsummary_by_county.Rd | 6 RAQSAPI-2.0.2/RAQSAPI/man/aqs_annualsummary_by_site.Rd | 7 RAQSAPI-2.0.2/RAQSAPI/man/aqs_cbsas.Rd | 9 RAQSAPI-2.0.2/RAQSAPI/man/aqs_counties_by_state.Rd | 2 RAQSAPI-2.0.2/RAQSAPI/man/aqs_dailysummary_by_box.Rd | 2 RAQSAPI-2.0.2/RAQSAPI/man/aqs_dailysummary_by_cbsa.Rd | 2 RAQSAPI-2.0.2/RAQSAPI/man/aqs_dailysummary_by_county.Rd | 10 RAQSAPI-2.0.2/RAQSAPI/man/aqs_dailysummary_by_site.Rd | 16 RAQSAPI-2.0.2/RAQSAPI/man/aqs_dailysummary_by_state.Rd | 9 RAQSAPI-2.0.2/RAQSAPI/man/aqs_fields_by_service.Rd | 2 RAQSAPI-2.0.2/RAQSAPI/man/aqs_metadata_service.Rd |only RAQSAPI-2.0.2/RAQSAPI/man/aqs_monitors_by_box.Rd | 4 RAQSAPI-2.0.2/RAQSAPI/man/aqs_monitors_by_cbsa.Rd | 4 RAQSAPI-2.0.2/RAQSAPI/man/aqs_monitors_by_county.Rd | 8 RAQSAPI-2.0.2/RAQSAPI/man/aqs_monitors_by_site.Rd | 10 RAQSAPI-2.0.2/RAQSAPI/man/aqs_monitors_by_state.Rd | 6 RAQSAPI-2.0.2/RAQSAPI/man/aqs_parameters_by_class.Rd | 3 RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_annualpeferomanceeval_by_MA.Rd |only RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_annualpeferomanceeval_by_pqao.Rd |only RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_annualpeferomanceeval_by_site.Rd |only RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_annualpeferomanceeval_by_state.Rd |only RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_annualperformanceeval_by_county.Rd |only RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_annualperformanceevaltransaction_by_MA.Rd |only RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_annualperformanceevaltransaction_by_county.Rd |only RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_annualperformanceevaltransaction_by_pqao.Rd |only RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_annualperformanceevaltransaction_by_site.Rd |only 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RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_flowrateverification_by_county.Rd | 3 RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_flowrateverification_by_pqao.Rd | 2 RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_flowrateverification_by_site.Rd | 3 RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_one_point_qc_by_MA.Rd | 6 RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_one_point_qc_by_county.Rd | 3 RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_one_point_qc_by_pqao.Rd | 2 RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_one_point_qc_by_site.Rd | 5 RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_pep_audit_by_MA.Rd | 2 RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_pep_audit_by_county.Rd | 3 RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_pep_audit_by_pqao.Rd | 2 RAQSAPI-2.0.2/RAQSAPI/man/aqs_qa_pep_audit_by_site.Rd | 3 RAQSAPI-2.0.2/RAQSAPI/man/aqs_quarterlysummary_by_box.Rd |only RAQSAPI-2.0.2/RAQSAPI/man/aqs_quarterlysummary_by_cbsa.Rd |only RAQSAPI-2.0.2/RAQSAPI/man/aqs_quarterlysummary_by_county.Rd |only RAQSAPI-2.0.2/RAQSAPI/man/aqs_quarterlysummary_by_site.Rd |only RAQSAPI-2.0.2/RAQSAPI/man/aqs_quarterlysummary_by_state.Rd 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RAQSAPI-2.0.2/RAQSAPI/vignettes/RAQSAPIvignette.Rmd | 8 RAQSAPI-2.0.2/RAQSAPI/vignettes/Troubleshooting.Rmd | 5 RAQSAPI-2.0.2/RAQSAPI/vignettes/UsingRAQSAPI.Rmd | 174 RAQSAPI-2.0.2/RAQSAPI/vignettes/figures |only 139 files changed, 27986 insertions(+), 16573 deletions(-)
Title: Package Dependency Resolution and Downloads
Description: Find recursive dependencies of 'R' packages from various
sources. Solve the dependencies to obtain a consistent set of
packages to install. Download packages, and install them. It
supports packages on 'CRAN', 'Bioconductor' and other 'CRAN-like'
repositories, 'GitHub', package 'URLs', and local package trees
and files. It caches metadata and package files via the 'pkgcache'
package, and performs all 'HTTP' requests, downloads, builds and
installations in parallel. 'pkgdepends' is the workhorse of the
'pak' package.
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between pkgdepends versions 0.1.2 dated 2021-06-30 and 0.2.0 dated 2021-11-29
DESCRIPTION | 17 MD5 | 121 +++--- NAMESPACE | 3 R/assertions.R | 3 R/config.R |only R/dep-utils.R | 12 R/download-progress-bar.R | 10 R/download.R | 6 R/git-auth.R | 4 R/install-plan.R | 29 + R/onload.R | 1 R/pkg-dependencies.R | 7 R/pkg-downloads.R | 6 R/pkg-installation.R | 26 + R/pkg-lockfile.R | 40 +- R/pkg-plan.R | 193 ++-------- R/pkgdepends-config.R |only R/platform.R | 115 ++++- R/resolution-df.R | 6 R/resolution.R | 63 ++- R/satisfies.R | 8 R/solve.R | 152 ++++++- R/sysreqs.R |only R/type-any.R |only R/type-bioc.R | 19 R/type-cran.R | 20 + R/type-deps.R | 4 R/type-github.R | 19 R/type-installed.R | 87 +++- R/type-local.R | 5 R/type-standard.R | 23 + R/type-url.R | 13 R/type.R | 30 + R/utils.R | 70 +-- README.md | 84 ++-- inst/WORDLIST | 18 man/as_pkg_dependencies.Rd | 2 man/default_platforms.Rd | 62 ++- man/pkg_config.Rd | 103 ++++- man/pkg_deps.Rd | 7 man/pkg_download_proposal.Rd | 6 man/pkg_downloads.Rd | 2 man/pkg_installation_plan.Rd | 29 + man/pkg_installation_proposal.Rd | 21 - man/pkg_refs.Rd | 26 + man/pkgdepends-package.Rd | 59 +-- tests/testthat/fixtures/packages/vignettes/DESCRIPTION | 1 tests/testthat/fixtures/packages/vignettes/vignettes/test.Rmd | 2 tests/testthat/helper-resolution.R | 7 tests/testthat/setup.R |only tests/testthat/test-build.R | 4 tests/testthat/test-install-parts.R | 5 tests/testthat/test-platforms.R |only tests/testthat/test-resolution.R | 45 +- tests/testthat/test-solve-pieces.R | 18 tests/testthat/test-solve-policies.R | 57 +- tests/testthat/test-solve.R | 38 + tests/testthat/test-tree.R | 2 tests/testthat/test-type-bioc.R | 6 tests/testthat/test-type-cran.R | 12 tests/testthat/test-type-installed.R | 2 tests/testthat/test-type-local.R | 6 tests/testthat/test-type-standard.R | 4 tests/testthat/test-type-url.R |only tests/testthat/test-utils.R | 31 - 65 files changed, 1115 insertions(+), 656 deletions(-)
Title: Landscape Meteorology Tools
Description: Functions to estimate weather variables at any position of a landscape [De Caceres et al. (2018) <doi:10.1016/j.envsoft.2018.08.003>].
Author: Miquel De Cáceres [aut, cre],
Nicolas Martin [aut],
Víctor Granda [aut],
Antoine Cabon [aut]
Maintainer: Miquel De Cáceres <miquelcaceres@gmail.com>
Diff between meteoland versions 0.9.7 dated 2020-10-27 and 1.0.1 dated 2021-11-29
meteoland-0.9.7/meteoland/R/download_historicalstationlist.R |only meteoland-1.0.1/meteoland/DESCRIPTION | 14 meteoland-1.0.1/meteoland/MD5 | 166 - meteoland-1.0.1/meteoland/NAMESPACE | 15 meteoland-1.0.1/meteoland/NEWS.md | 16 meteoland-1.0.1/meteoland/R/RcppExports.R | 24 meteoland-1.0.1/meteoland/R/correctionpoints.R | 2 meteoland-1.0.1/meteoland/R/correctionpoints.errors.R | 2 meteoland-1.0.1/meteoland/R/defaultInterpolationParams.R | 3 meteoland-1.0.1/meteoland/R/download_currentday.R | 337 -- meteoland-1.0.1/meteoland/R/download_historical.R | 455 --- meteoland-1.0.1/meteoland/R/download_stationlist.R |only meteoland-1.0.1/meteoland/R/extractNetCDF.R | 2 meteoland-1.0.1/meteoland/R/interpolationgrid.R | 34 meteoland-1.0.1/meteoland/R/interpolationpixels.R | 34 meteoland-1.0.1/meteoland/R/interpolationpoints.R | 32 meteoland-1.0.1/meteoland/R/ncdf_internals.R | 14 meteoland-1.0.1/meteoland/R/reshapemeteospain.R |only meteoland-1.0.1/meteoland/R/reshapeweathercan.R | 2 meteoland-1.0.1/meteoland/R/reshapeworldmet.R | 2 meteoland-1.0.1/meteoland/R/utils.R | 70 meteoland-1.0.1/meteoland/build/vignette.rds |binary meteoland-1.0.1/meteoland/data/examplecorrectiondata.rda |binary meteoland-1.0.1/meteoland/data/examplegridtopography.rda |binary meteoland-1.0.1/meteoland/data/exampleinterpolationdata.rda |binary meteoland-1.0.1/meteoland/inst/CITATION | 2 meteoland-1.0.1/meteoland/inst/doc/UserGuide.R | 11 meteoland-1.0.1/meteoland/inst/doc/UserGuide.Rmd | 16 meteoland-1.0.1/meteoland/inst/doc/UserGuide.html | 1322 ++++------ meteoland-1.0.1/meteoland/man/MeteorologyInterpolationData-class.Rd | 2 meteoland-1.0.1/meteoland/man/MeteorologyInterpolationData.Rd | 2 meteoland-1.0.1/meteoland/man/MeteorologyProcedureData-class.Rd | 2 meteoland-1.0.1/meteoland/man/MeteorologyUncorrectedData-class.Rd | 2 meteoland-1.0.1/meteoland/man/MeteorologyUncorrectedData.Rd | 2 meteoland-1.0.1/meteoland/man/NetCDFutils.Rd | 2 meteoland-1.0.1/meteoland/man/SpatialGridMeteorology-class.Rd | 2 meteoland-1.0.1/meteoland/man/SpatialGridMeteorology.Rd | 2 meteoland-1.0.1/meteoland/man/SpatialGridTopography-class.Rd | 2 meteoland-1.0.1/meteoland/man/SpatialGridTopography.Rd | 2 meteoland-1.0.1/meteoland/man/SpatialPixelsMeteorology-class.Rd | 2 meteoland-1.0.1/meteoland/man/SpatialPixelsMeteorology.Rd | 2 meteoland-1.0.1/meteoland/man/SpatialPixelsTopography-class.Rd | 4 meteoland-1.0.1/meteoland/man/SpatialPixelsTopography.Rd | 2 meteoland-1.0.1/meteoland/man/SpatialPointsMeteorology-class.Rd | 2 meteoland-1.0.1/meteoland/man/SpatialPointsMeteorology.Rd | 2 meteoland-1.0.1/meteoland/man/SpatialPointsTopography-class.Rd | 2 meteoland-1.0.1/meteoland/man/SpatialPointsTopography.Rd | 2 meteoland-1.0.1/meteoland/man/averagearea.Rd | 2 meteoland-1.0.1/meteoland/man/correction_lowlevel.Rd | 2 meteoland-1.0.1/meteoland/man/correctionpoints.Rd | 2 meteoland-1.0.1/meteoland/man/defaultCorrectionParams.Rd | 2 meteoland-1.0.1/meteoland/man/defaultGenerationParams.Rd | 2 meteoland-1.0.1/meteoland/man/defaultInterpolationParams.Rd | 3 meteoland-1.0.1/meteoland/man/downloadAEMET.Rd | 23 meteoland-1.0.1/meteoland/man/downloadMETEOCLIMATIC.Rd |only meteoland-1.0.1/meteoland/man/downloadMG.Rd | 7 meteoland-1.0.1/meteoland/man/downloadSMC.Rd | 23 meteoland-1.0.1/meteoland/man/extractNetCDF.Rd | 2 meteoland-1.0.1/meteoland/man/extractdates.Rd | 2 meteoland-1.0.1/meteoland/man/humidity.Rd | 2 meteoland-1.0.1/meteoland/man/interpolation.coverage.Rd | 2 meteoland-1.0.1/meteoland/man/interpolation.cv.Rd | 2 meteoland-1.0.1/meteoland/man/interpolation_lowlevel.Rd | 11 meteoland-1.0.1/meteoland/man/interpolationpoints.Rd | 2 meteoland-1.0.1/meteoland/man/mergegrids.Rd | 2 meteoland-1.0.1/meteoland/man/meteocomplete.Rd | 2 meteoland-1.0.1/meteoland/man/meteoplot.Rd | 2 meteoland-1.0.1/meteoland/man/penman.Rd | 2 meteoland-1.0.1/meteoland/man/precipitationconcentration.Rd | 2 meteoland-1.0.1/meteoland/man/radiation.Rd | 2 meteoland-1.0.1/meteoland/man/readWindNinjaWindFields.Rd | 2 meteoland-1.0.1/meteoland/man/readmeteorologygrid.Rd | 2 meteoland-1.0.1/meteoland/man/readmeteorologypoint.Rd | 2 meteoland-1.0.1/meteoland/man/reshapeworldmet.Rd | 15 meteoland-1.0.1/meteoland/man/spplot.Rd | 2 meteoland-1.0.1/meteoland/man/summarypoints.Rd | 2 meteoland-1.0.1/meteoland/man/utils.Rd | 2 meteoland-1.0.1/meteoland/man/weathergeneration.Rd | 2 meteoland-1.0.1/meteoland/man/writemeteorologygrid.Rd | 2 meteoland-1.0.1/meteoland/man/writemeteorologypoint.Rd | 2 meteoland-1.0.1/meteoland/src/RcppExports.cpp | 59 meteoland-1.0.1/meteoland/src/interpolationutils.cpp | 3 meteoland-1.0.1/meteoland/src/precipitation.cpp | 19 meteoland-1.0.1/meteoland/src/relativehumidity.cpp | 37 meteoland-1.0.1/meteoland/src/temperature.cpp | 28 meteoland-1.0.1/meteoland/vignettes/UserGuide.Rmd | 16 86 files changed, 1066 insertions(+), 1843 deletions(-)
Title: Diagnostic Plot and Multivariate Summary Statistics of Weighted
Samples from Importance Sampling
Description: Fast functions for effective sample size, weighted multivariate
mean, variance, and quantile computation, and weight diagnostic plot for
generic importance sampling type or other probability weighted samples.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between diagis versions 0.2.1 dated 2021-11-16 and 0.2.2 dated 2021-11-29
DESCRIPTION | 6 +- MD5 | 16 +++--- NEWS | 5 ++ R/ess.R | 123 ++++++++++++++++++++++++++------------------------ R/means.R | 28 ++++++++++- R/ses.R | 8 +++ R/vars.R | 19 ++++++- R/weighted_quantile.R | 4 + inst/doc/diagis.html | 2 9 files changed, 135 insertions(+), 76 deletions(-)
Title: Chinese Name Database 1930-2008
Description: A database of Chinese surnames and Chinese given names (1930-2008).
This database contains nationwide frequency statistics of
1,806 Chinese surnames and 2,614 Chinese characters used in given names,
covering about 1.2 billion Han Chinese population
(96.8% of the Han Chinese household-registered population
born from 1930 to 2008 and still alive in 2008).
This package also contains a function for computing multiple features of
Chinese surnames and Chinese given names for scientific research (e.g.,
name uniqueness, name gender, name valence, and name warmth/competence).
Author: Han-Wu-Shuang Bao [aut, cre]
Maintainer: Han-Wu-Shuang Bao <baohws@foxmail.com>
Diff between ChineseNames versions 1.1.0 dated 2021-06-21 and 1.1.1 dated 2021-11-29
DESCRIPTION | 12 +++---- MD5 | 12 +++---- R/ChineseNames.R | 70 +++++++++++++++++++++++++++++----------------- README.md | 7 ++-- inst/CITATION | 2 - man/ChineseNames.Rd | 7 +++- man/compute_name_index.Rd | 33 ++++++++++++++------- 7 files changed, 90 insertions(+), 53 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-02 1.8.3
2021-07-21 1.8.2
2021-06-04 1.7.2
2021-04-11 1.7.0
2021-03-03 1.6.7
2021-02-17 1.6.6
2021-01-07 1.6.3
2021-01-04 1.6.2
2020-10-30 1.6.1
2020-10-19 1.6.0
2020-08-26 1.5.3
2020-07-17 1.5.1
2020-05-04 1.5.0
2020-04-11 1.4.6
2020-01-19 1.4.5
2019-10-27 1.4.3
2019-08-20 1.4.2
2019-07-01 1.4.1
2019-04-05 1.4.0
2019-03-06 1.3.3
2019-01-04 1.3.2
2018-10-30 1.3.1
2018-08-07 1.3.0
2018-06-21 1.2.6
2018-06-18 1.2.5
2018-05-11 1.2.4
2018-04-03 1.2.3
2018-03-05 1.1.1
Title: Tools for Managing SSH and Git Credentials
Description: Setup and retrieve HTTPS and SSH credentials for use with 'git' and
other services. For HTTPS remotes the package interfaces the 'git-credential'
utility which 'git' uses to store HTTP usernames and passwords. For SSH
remotes we provide convenient functions to find or generate appropriate SSH
keys. The package both helps the user to setup a local git installation, and
also provides a back-end for git/ssh client libraries to authenticate with
existing user credentials.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between credentials versions 1.3.1 dated 2021-07-25 and 1.3.2 dated 2021-11-29
DESCRIPTION | 6 - MD5 | 14 +-- NEWS | 3 build/vignette.rds |binary inst/doc/intro.R | 2 inst/doc/intro.Rmd | 2 inst/doc/intro.html | 198 +++++++++++++++++++++++++++++++++++++++++++++++++++- vignettes/intro.Rmd | 2 8 files changed, 211 insertions(+), 16 deletions(-)
Title: Event Stream Abstraction using Interval Logic
Description: This is the R API for the 'nfer' formalism (<http://nfer.io/>).
'nfer' was developed to specify event stream abstractions for spacecraft
telemetry such as the Mars Science Laboratory. Users write rules using
a syntax that borrows heavily from Allen's Temporal Logic that, when
applied to an event stream, construct a hierarchy of temporal intervals
with data. The R API supports loading rules from a file or mining them
from historical data. Traces of events or pools of intervals are
provided as data frames.
Author: Sean Kauffman [aut, cre] (<https://orcid.org/0000-0001-6341-3898>)
Maintainer: Sean Kauffman <seank@cs.aau.dk>
Diff between nfer versions 1.0.0 dated 2021-11-23 and 1.0.1 dated 2021-11-29
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 4 ++++ src/dsl.tab.h | 1 - src/dsl.yy.c | 6 ------ src/types.h | 1 + 6 files changed, 13 insertions(+), 15 deletions(-)
Title: 'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog
Description: 'GWAS' R 'API' Data Download.
This package provides easy access to the 'NHGRI'-'EBI' 'GWAS' Catalog data by
accessing the 'REST' 'API' <https://www.ebi.ac.uk/gwas/rest/docs/api/>.
Author: Ramiro Magno [aut, cre] (<https://orcid.org/0000-0001-5226-3441>),
Ana-Teresa Maia [aut] (<https://orcid.org/0000-0002-0454-9207>),
CINTESIS [cph, fnd]
Maintainer: Ramiro Magno <ramiro.magno@gmail.com>
Diff between gwasrapidd versions 0.99.11 dated 2021-11-23 and 0.99.12 dated 2021-11-29
gwasrapidd-0.99.11/gwasrapidd/inst/doc/bmi_variants.R |only gwasrapidd-0.99.11/gwasrapidd/inst/doc/faq.R |only gwasrapidd-0.99.11/gwasrapidd/inst/doc/gwasrapidd.R |only gwasrapidd-0.99.12/gwasrapidd/DESCRIPTION | 6 gwasrapidd-0.99.12/gwasrapidd/MD5 | 91 - gwasrapidd-0.99.12/gwasrapidd/R/class-associations.R | 2 gwasrapidd-0.99.12/gwasrapidd/R/get_associations.R | 8 gwasrapidd-0.99.12/gwasrapidd/R/get_metadata.R | 2 gwasrapidd-0.99.12/gwasrapidd/R/get_studies.R | 8 gwasrapidd-0.99.12/gwasrapidd/R/get_traits.R | 6 gwasrapidd-0.99.12/gwasrapidd/R/get_variants.R | 10 gwasrapidd-0.99.12/gwasrapidd/README.md | 4 gwasrapidd-0.99.12/gwasrapidd/build/partial.rdb |binary gwasrapidd-0.99.12/gwasrapidd/build/vignette.rds |binary gwasrapidd-0.99.12/gwasrapidd/inst/WORDLIST | 2 gwasrapidd-0.99.12/gwasrapidd/inst/doc/bmi_variants.Rmd | 67 gwasrapidd-0.99.12/gwasrapidd/inst/doc/bmi_variants.html | 116 - gwasrapidd-0.99.12/gwasrapidd/inst/doc/faq.Rmd | 593 ++++++- gwasrapidd-0.99.12/gwasrapidd/inst/doc/faq.html | 780 ++++------ gwasrapidd-0.99.12/gwasrapidd/inst/doc/gwasrapidd.Rmd | 100 - gwasrapidd-0.99.12/gwasrapidd/inst/doc/gwasrapidd.html | 227 -- gwasrapidd-0.99.12/gwasrapidd/inst/mocks.R | 20 gwasrapidd-0.99.12/gwasrapidd/man/associations-class.Rd | 2 gwasrapidd-0.99.12/gwasrapidd/man/get_associations.Rd | 8 gwasrapidd-0.99.12/gwasrapidd/man/get_metadata.Rd | 2 gwasrapidd-0.99.12/gwasrapidd/man/get_studies.Rd | 8 gwasrapidd-0.99.12/gwasrapidd/man/get_traits.Rd | 6 gwasrapidd-0.99.12/gwasrapidd/man/get_variants.Rd | 10 gwasrapidd-0.99.12/gwasrapidd/tests/testthat/mocks/gc/a/0 |only gwasrapidd-0.99.12/gwasrapidd/tests/testthat/mocks/gc/a/24299759 |only gwasrapidd-0.99.12/gwasrapidd/tests/testthat/mocks/gc/a/24300097 |only gwasrapidd-0.99.12/gwasrapidd/tests/testthat/mocks/gc/s/GCST0 |only gwasrapidd-0.99.12/gwasrapidd/tests/testthat/mocks/gc/s/GCST001084 |only gwasrapidd-0.99.12/gwasrapidd/tests/testthat/mocks/gc/s/GCST001085 |only gwasrapidd-0.99.12/gwasrapidd/tests/testthat/mocks/gc/t/EFO_0005108 |only gwasrapidd-0.99.12/gwasrapidd/tests/testthat/mocks/gc/t/EFO_0005108.json |only gwasrapidd-0.99.12/gwasrapidd/tests/testthat/mocks/gc/t/EFO_0005109 |only gwasrapidd-0.99.12/gwasrapidd/tests/testthat/mocks/gc/v/rs0 |only gwasrapidd-0.99.12/gwasrapidd/tests/testthat/mocks/gc/v/rs138331350 |only gwasrapidd-0.99.12/gwasrapidd/tests/testthat/mocks/gc/v/rs7904579 |only gwasrapidd-0.99.12/gwasrapidd/tests/testthat/mocks/gc/v/search/findByEfoTrait-441287.json |only gwasrapidd-0.99.12/gwasrapidd/tests/testthat/test-get_metadata.R | 3 gwasrapidd-0.99.12/gwasrapidd/tests/testthat/test-id_mapping.R | 312 ++-- gwasrapidd-0.99.12/gwasrapidd/tests/testthat/test-request.R | 40 gwasrapidd-0.99.12/gwasrapidd/vignettes/bmi_variants.Rmd | 67 gwasrapidd-0.99.12/gwasrapidd/vignettes/bmi_variants.Rmd.orig |only gwasrapidd-0.99.12/gwasrapidd/vignettes/faq.Rmd | 593 ++++++- gwasrapidd-0.99.12/gwasrapidd/vignettes/faq.Rmd.orig |only gwasrapidd-0.99.12/gwasrapidd/vignettes/gwasrapidd.Rmd | 100 - gwasrapidd-0.99.12/gwasrapidd/vignettes/gwasrapidd.Rmd.orig |only gwasrapidd-0.99.12/gwasrapidd/vignettes/precompile.R |only 51 files changed, 1987 insertions(+), 1206 deletions(-)
Title: Bayesian Estimation of (Sparse) Latent Factor Stochastic
Volatility Models
Description: Markov chain Monte Carlo (MCMC) sampler for fully Bayesian estimation of latent factor stochastic volatility models with interweaving <doi:10.1080/10618600.2017.1322091>. Sparsity can be achieved through the usage of Normal-Gamma priors on the factor loading matrix <doi:10.1016/j.jeconom.2018.11.007>.
Author: Gregor Kastner [aut, cre] (<https://orcid.org/0000-0002-8237-8271>),
Darjus Hosszejni [ctb] (<https://orcid.org/0000-0002-3803-691X>),
Luis Gruber [ctb] (<https://orcid.org/0000-0002-2399-738X>)
Maintainer: Gregor Kastner <gregor.kastner@aau.at>
Diff between factorstochvol versions 0.10.2 dated 2021-02-09 and 1.0.0 dated 2021-11-29
DESCRIPTION | 14 MD5 | 127 - NAMESPACE | 1 NEWS | 13 R/factorstochvol-package.R | 39 R/generics.R | 21 R/imports.R | 13 R/plotting.R | 189 +- R/simulation.R | 37 R/utilities_fsvdraws.R | 135 - R/utilities_fsvsim.R | 23 R/utilities_other.R | 43 R/wrappers.R | 154 - R/zzz.R | 13 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 14 inst/doc/paper.Rtex | 77 inst/doc/paper.pdf |binary man/comtimeplot.Rd | 2 man/cormat.fsvdraws.Rd | 2 man/covmat.fsvdraws.Rd | 2 man/facloadcredplot.Rd | 2 man/facloadpairplot.Rd | 2 man/findrestrict.Rd | 2 man/fsvsample.Rd | 13 man/orderident.Rd | 2 man/predcond.Rd | 2 man/predcor.Rd | 2 man/predcov.Rd | 2 man/predh.Rd | 4 man/preorder.Rd | 2 man/runningcormat.Rd | 2 man/runningcovmat.Rd | 2 man/signident.Rd | 2 man/voltimeplot.Rd | 2 src/dmvnorm.cpp | 21 src/dmvnorm.h | 13 src/predict.cpp | 25 src/predict.h | 13 src/progutils.cpp | 37 src/progutils.h | 13 src/register.cpp | 15 src/sampler.cpp | 2358 +++++++++++++-------------- src/sampler.h | 15 src/testrgig.cpp | 13 tests/testthat/test-plotting.R |only tests/testthat/test-wrappers.R | 6 vignettes/Figures/jss3813-comtimeplot-1.pdf |binary vignettes/Figures/jss3813-corimageplot-1.pdf |binary vignettes/Figures/jss3813-cortimeplot-1.pdf |binary vignettes/Figures/jss3813-evdiag-1.pdf |binary vignettes/Figures/jss3813-fsvprepdata-1.pdf |binary vignettes/Figures/jss3813-loadplot2-1.pdf |binary vignettes/Figures/jss3813-loadplot2-2.pdf |binary vignettes/Figures/jss3813-logdetcovn-1.pdf |binary vignettes/Figures/jss3813-plotsvlpred-1.pdf |binary vignettes/Figures/jss3813-preddist-1.pdf |binary vignettes/Figures/jss3813-svlbetaplot-1.pdf |binary vignettes/Figures/jss3813-svlplot-1.pdf |binary vignettes/Figures/jss3813-varplot-1.pdf | 236 +- vignettes/Figures/jss3813-varplot2-1.pdf |binary vignettes/Figures/jss3813-voltimeplot-1.pdf |binary vignettes/paper.Rtex | 77 vignettes/ref.bib | 13 65 files changed, 1978 insertions(+), 1837 deletions(-)
More information about factorstochvol at CRAN
Permanent link
Title: Probabilistic Population Projection
Description: Generating population projections for all countries of the world using several probabilistic components, such as total fertility rate and life expectancy (Raftery et al., 2012 <doi:10.1073/pnas.1211452109>).
Author: Hana Sevcikova, Adrian Raftery, Thomas Buettner
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesPop versions 9.0-0 dated 2021-11-26 and 9.0-1 dated 2021-11-29
ChangeLog | 4 ++-- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- build/partial.rdb |binary src/projection_functions.c | 17 +++++++++-------- 5 files changed, 19 insertions(+), 18 deletions(-)
Title: Cache 'CRAN'-Like Metadata and R Packages
Description: Metadata and package cache for CRAN-like repositories.
This is a utility package to be used by package management tools
that want to take advantage of caching.
Author: Gábor Csárdi [aut, cre]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between pkgcache versions 1.2.2 dated 2021-05-19 and 1.3.0 dated 2021-11-29
DESCRIPTION | 12 MD5 | 195 +++++++++++--- NAMESPACE | 5 NEWS.md | 32 ++ R/aaa-async.R | 2 R/async-http.R | 35 +- R/bioc.R | 4 R/cache-dirs.R | 4 R/errors.R |only R/errors2.R |only R/installed.R |only R/metadata-cache.R | 20 - R/package.R | 1 R/packages-gz.R | 57 +++- R/platform-linux.R |only R/platform.R | 279 +++++++++++++++++++- R/repo-set.R | 6 R/repo-status.R | 11 R/utils.R | 104 ++----- README.md | 124 ++++----- inst/WORDLIST | 24 - man/bioc_version.Rd | 2 man/cranlike_metadata_cache.Rd | 14 - man/current_r_platform.Rd | 71 ++++- man/parse_installed.Rd |only man/parse_packages.Rd |only man/pkgcache-package.Rd | 102 +++---- man/repo_get.Rd | 6 man/repo_status.Rd | 3 src |only tests/async/test-process.R | 1 tests/async/test-timer.R | 17 - tests/testthat/_snaps/installed.md |only tests/testthat/_snaps/packages-gz.md |only tests/testthat/_snaps/platform.md |only tests/testthat/_snaps/utils.md |only tests/testthat/fixtures/PACKAGES-win2.gz |only tests/testthat/fixtures/description |only tests/testthat/fixtures/lib |only tests/testthat/fixtures/lib2 |only tests/testthat/fixtures/lib3 |only tests/testthat/fixtures/lib4 |only tests/testthat/fixtures/lib5 |only tests/testthat/fixtures/linux |only tests/testthat/fixtures/packages |only tests/testthat/setup.R | 5 tests/testthat/test-1-metadata-cache-2.R | 2 tests/testthat/test-1-metadata-cache-3.R | 14 + tests/testthat/test-4-async-http.R | 92 ++++++ tests/testthat/test-cache-dir.R | 52 +++ tests/testthat/test-errors.R |only tests/testthat/test-installed.R |only tests/testthat/test-iso-date.R |only tests/testthat/test-packages-gz.R | 23 + tests/testthat/test-platform.R |only tests/testthat/test-repo-set.R | 12 tests/testthat/test-spelling.R |only tests/testthat/test-utils.R | 425 ++++++++++++++++++++++++------- 58 files changed, 1360 insertions(+), 396 deletions(-)
More information about nonparametric.bayes at CRAN
Permanent link
Title: Structural Equation Modeling and Twin Modeling in R
Description: Quickly create, run, and report structural equation models, and twin models.
See '?umx' for help, and umx_open_CRAN_page("umx") for NEWS.
Timothy C. Bates, Michael C. Neale, Hermine H. Maes, (2019). umx: A library for Structural Equation and Twin Modelling in R.
Twin Research and Human Genetics, 22, 27-41. <doi:10.1017/thg.2019.2>.
Author: Timothy C. Bates [aut, cre] (<https://orcid.org/0000-0002-1153-9007>),
Gillespie Nathan [wit],
Michael Zakharin [wit],
Brenton Wiernik [ctb],
Joshua N. Pritikin [ctb],
Michael C. Neale [ctb],
Hermine Maes [ctb]
Maintainer: Timothy C. Bates <timothy.c.bates@gmail.com>
Diff between umx versions 4.9.0 dated 2021-07-04 and 4.10.10 dated 2021-11-29
umx-4.10.10/umx/DESCRIPTION | 16 umx-4.10.10/umx/MD5 | 263 +++---- umx-4.10.10/umx/NAMESPACE | 6 umx-4.10.10/umx/NEWS.md | 45 + umx-4.10.10/umx/R/build_run_modify.R | 310 +++++---- umx-4.10.10/umx/R/datasets.R | 2 umx-4.10.10/umx/R/fit_and_reporting.R | 316 +++++---- umx-4.10.10/umx/R/lavanify2ram.R | 3 umx-4.10.10/umx/R/misc_and_utility.R | 648 +++++++++++-------- umx-4.10.10/umx/R/tmx.R | 115 +++ umx-4.10.10/umx/R/umxDoC.R | 2 umx-4.10.10/umx/R/umxPower.R | 191 +++-- umx-4.10.10/umx/R/umx_build_high_level_models.R | 23 umx-4.10.10/umx/R/umx_build_umxACEv.R | 2 umx-4.10.10/umx/R/umx_build_umxSimplex.R | 2 umx-4.10.10/umx/R/xmu.R | 7 umx-4.10.10/umx/README.md | 2 umx-4.10.10/umx/build/partial.rdb |binary umx-4.10.10/umx/inst/CITATION | 30 umx-4.10.10/umx/inst/WORDLIST | 43 - umx-4.10.10/umx/man/Fischbein_wt.Rd | 2 umx-4.10.10/umx/man/FishersMethod.Rd | 18 umx-4.10.10/umx/man/GFF.Rd | 2 umx-4.10.10/umx/man/RMSEA.MxModel.Rd | 8 umx-4.10.10/umx/man/RMSEA.Rd | 2 umx-4.10.10/umx/man/RMSEA.summary.mxmodel.Rd | 7 umx-4.10.10/umx/man/SE_from_p.Rd | 4 umx-4.10.10/umx/man/bucks.Rd | 25 umx-4.10.10/umx/man/deg2rad.Rd | 6 umx-4.10.10/umx/man/extractAIC.MxModel.Rd | 4 umx-4.10.10/umx/man/figures/ACEcovVarianceModel.pdf |binary umx-4.10.10/umx/man/figures/ACEcovVarianceModel.png |binary umx-4.10.10/umx/man/figures/TSLS.pdf |binary umx-4.10.10/umx/man/figures/TSLS.png |binary umx-4.10.10/umx/man/figures/sketch.pdf |binary umx-4.10.10/umx/man/figures/sketch.png |binary umx-4.10.10/umx/man/figures/umx_help_figures.graffle |binary umx-4.10.10/umx/man/fin_NI.Rd |only umx-4.10.10/umx/man/fin_interest.Rd | 17 umx-4.10.10/umx/man/fin_percent.Rd | 6 umx-4.10.10/umx/man/fin_valuation.Rd | 1 umx-4.10.10/umx/man/geometric_mean.Rd | 9 umx-4.10.10/umx/man/harmonic_mean.Rd | 4 umx-4.10.10/umx/man/libs.Rd | 3 umx-4.10.10/umx/man/loadings.MxModel.Rd | 3 umx-4.10.10/umx/man/loadings.Rd | 2 umx-4.10.10/umx/man/noNAs.Rd |only umx-4.10.10/umx/man/oddsratio.Rd | 9 umx-4.10.10/umx/man/plot.MxLISRELModel.Rd | 3 umx-4.10.10/umx/man/plot.MxModel.Rd | 4 umx-4.10.10/umx/man/power.ACE.test.Rd | 43 - umx-4.10.10/umx/man/print.RMSEA.Rd | 2 umx-4.10.10/umx/man/qm.Rd | 3 umx-4.10.10/umx/man/rad2deg.Rd | 3 umx-4.10.10/umx/man/reliability.Rd | 4 umx-4.10.10/umx/man/residuals.MxModel.Rd | 5 umx-4.10.10/umx/man/tmx_show.MxMatrix.Rd |only umx-4.10.10/umx/man/tmx_show.MxModel.Rd |only umx-4.10.10/umx/man/tmx_show.Rd | 65 - umx-4.10.10/umx/man/umx.Rd | 91 +- umx-4.10.10/umx/man/umxACE.Rd | 35 - umx-4.10.10/umx/man/umxACEcov.Rd | 7 umx-4.10.10/umx/man/umxACEv.Rd | 2 umx-4.10.10/umx/man/umxAPA.Rd | 2 umx-4.10.10/umx/man/umxBrownie.Rd | 1 umx-4.10.10/umx/man/umxCI.Rd | 4 umx-4.10.10/umx/man/umxCI_boot.Rd | 2 umx-4.10.10/umx/man/umxCP.Rd | 23 umx-4.10.10/umx/man/umxCompare.Rd | 14 umx-4.10.10/umx/man/umxConfint.Rd | 2 umx-4.10.10/umx/man/umxCov2cor.Rd | 4 umx-4.10.10/umx/man/umxDiagnose.Rd | 2 umx-4.10.10/umx/man/umxDoC.Rd | 2 umx-4.10.10/umx/man/umxEFA.Rd | 4 umx-4.10.10/umx/man/umxEquate.Rd | 10 umx-4.10.10/umx/man/umxExpCov.Rd | 2 umx-4.10.10/umx/man/umxExpMeans.Rd | 2 umx-4.10.10/umx/man/umxFactor.Rd | 1 umx-4.10.10/umx/man/umxFitIndices.Rd | 2 umx-4.10.10/umx/man/umxGxE.Rd | 4 umx-4.10.10/umx/man/umxGxE_window.Rd | 2 umx-4.10.10/umx/man/umxHetCor.Rd | 5 umx-4.10.10/umx/man/umxIP.Rd | 18 umx-4.10.10/umx/man/umxLav2RAM.Rd | 4 umx-4.10.10/umx/man/umxModify.Rd | 2 umx-4.10.10/umx/man/umxPath.Rd | 9 umx-4.10.10/umx/man/umxPower.Rd | 49 - umx-4.10.10/umx/man/umxRAM.Rd | 15 umx-4.10.10/umx/man/umxReduce.Rd | 12 umx-4.10.10/umx/man/umxReduceACE.Rd | 29 umx-4.10.10/umx/man/umxReduceGxE.Rd | 14 umx-4.10.10/umx/man/umxRotate.Rd | 2 umx-4.10.10/umx/man/umxRun.Rd | 24 umx-4.10.10/umx/man/umxSimplex.Rd | 2 umx-4.10.10/umx/man/umxSummarizeTwinData.Rd | 5 umx-4.10.10/umx/man/umxSummary.MxModel.Rd | 1 umx-4.10.10/umx/man/umxSummaryACE.Rd | 4 umx-4.10.10/umx/man/umxSummaryACEcov.Rd | 1 umx-4.10.10/umx/man/umxSummaryCP.Rd | 1 umx-4.10.10/umx/man/umxSummaryGxE.Rd | 1 umx-4.10.10/umx/man/umxSummaryIP.Rd | 5 umx-4.10.10/umx/man/umxTwoStage.Rd |only umx-4.10.10/umx/man/umxWeightedAIC.Rd | 4 umx-4.10.10/umx/man/umx_apply.Rd | 4 umx-4.10.10/umx/man/umx_as_numeric.Rd | 4 umx-4.10.10/umx/man/umx_check_parallel.Rd | 40 - umx-4.10.10/umx/man/umx_cont_2_quantiles.Rd | 1 umx-4.10.10/umx/man/umx_cor.Rd | 4 umx-4.10.10/umx/man/umx_has_means.Rd | 2 umx-4.10.10/umx/man/umx_lower2full.Rd | 1 umx-4.10.10/umx/man/umx_make.Rd | 5 umx-4.10.10/umx/man/umx_make_MR_data.Rd | 1 umx-4.10.10/umx/man/umx_make_TwinData.Rd | 3 umx-4.10.10/umx/man/umx_make_fake_data.Rd | 1 umx-4.10.10/umx/man/umx_make_raw_from_cov.Rd | 1 umx-4.10.10/umx/man/umx_make_twin_data_nice.Rd | 7 umx-4.10.10/umx/man/umx_means.Rd | 4 umx-4.10.10/umx/man/umx_polychoric.Rd | 1 umx-4.10.10/umx/man/umx_polypairwise.Rd | 1 umx-4.10.10/umx/man/umx_polytriowise.Rd | 1 umx-4.10.10/umx/man/umx_r_test.Rd | 4 umx-4.10.10/umx/man/umx_read_lower.Rd | 1 umx-4.10.10/umx/man/umx_read_prolific_demog.Rd | 1 umx-4.10.10/umx/man/umx_rename.Rd | 7 umx-4.10.10/umx/man/umx_reorder.Rd | 1 umx-4.10.10/umx/man/umx_residualize.Rd | 2 umx-4.10.10/umx/man/umx_round.Rd | 4 umx-4.10.10/umx/man/umx_scale.Rd | 4 umx-4.10.10/umx/man/umx_score_scale.Rd | 9 umx-4.10.10/umx/man/umx_select_valid.Rd | 1 umx-4.10.10/umx/man/umx_set_cores.Rd | 4 umx-4.10.10/umx/man/umx_stack.Rd | 1 umx-4.10.10/umx/man/umx_var.Rd | 4 umx-4.10.10/umx/man/umx_wide2long.Rd | 2 umx-4.9.0/umx/man/figures/set_default_app.png |only umx-4.9.0/umx/man/umxMendelianRandomization.Rd |only 136 files changed, 1701 insertions(+), 1140 deletions(-)
Title: Eliminate the Influence of Co-Expression Genes on Target Genes
Description: Functions can be used for batch survival analysis,
but not only for it. Most importantly, it can verify any
P-value calculated according to the gene expression level and
eliminate the influence of co-expression genes.
Author: Honglu Zhang [aut, cre, cph] (<https://orcid.org/0000-0002-4844-5004>),
Qi Zhang [ctb] (<https://orcid.org/0000-0012-0199-6968>),
Xiaodong Pei [ctb] (<https://orcid.org/0000-0002-7897-4505>),
Jiawen Guo [ctb] (<https://orcid.org/0000-0002-0331-5038>),
Enpeng Liu [ctb] (<https://orcid.org/0000-0002-5549-957X>)
Maintainer: Honglu Zhang <15738817548@163.com>
Diff between survival666 versions 0.1 dated 2021-11-24 and 0.5 dated 2021-11-29
survival666-0.1/survival666/man/checkout_survival.Rd |only survival666-0.5/survival666/DESCRIPTION | 6 +- survival666-0.5/survival666/MD5 | 13 ++-- survival666-0.5/survival666/NAMESPACE | 3 - survival666-0.5/survival666/R/checkout_survival.R | 55 +++++++++++++------ survival666-0.5/survival666/R/super_survival.R | 10 +-- survival666-0.5/survival666/R/survival_pie.R | 18 +++--- survival666-0.5/survival666/man/super_survival.Rd | 8 +- 8 files changed, 69 insertions(+), 44 deletions(-)
Title: Character String Processing Facilities
Description: A collection of character string/text/natural language
processing tools for pattern searching (e.g., with 'Java'-like regular
expressions or the 'Unicode' collation algorithm), random string generation,
case mapping, string transliteration, concatenation, sorting, padding,
wrapping, Unicode normalisation, date-time formatting and parsing,
and many more. They are fast, consistent, convenient, and -
thanks to 'ICU' (International Components for Unicode) -
portable across all locales and platforms.
Author: Marek Gagolewski [aut, cre, cph] (<https://orcid.org/0000-0003-0637-6028>),
Bartek Tartanus [ctb], and others (stringi source code);
Unicode, Inc. and others (ICU4C source code, Unicode Character Database)
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between stringi versions 1.7.5 dated 2021-10-04 and 1.7.6 dated 2021-11-29
DESCRIPTION | 8 ++++---- INSTALL | 17 +++++++++++++++-- MD5 | 12 ++++++------ NEWS | 7 +++++++ src/icu69/i18n/double-conversion-utils.h | 3 ++- src/stri_container_utf8.cpp | 1 + src/stri_ucnv.h | 19 ++++++++++++++++--- 7 files changed, 51 insertions(+), 16 deletions(-)
Title: Credit Risk Scorecard
Description: The `scorecard` package makes the development of credit risk scorecard
easier and efficient by providing functions for some common tasks,
such as data partition, variable selection, woe binning, scorecard scaling,
performance evaluation and report generation. These functions can also used
in the development of machine learning models.
The references including:
1. Refaat, M. (2011, ISBN: 9781447511199). Credit Risk Scorecard:
Development and Implementation Using SAS.
2. Siddiqi, N. (2006, ISBN: 9780471754510). Credit risk scorecards.
Developing and Implementing Intelligent Credit Scoring.
Author: Shichen Xie [aut, cre]
Maintainer: Shichen Xie <xie@shichen.name>
Diff between scorecard versions 0.3.5 dated 2021-09-06 and 0.3.6 dated 2021-11-29
scorecard-0.3.5/scorecard/tests/testthat/test_init.R |only scorecard-0.3.6/scorecard/DESCRIPTION | 8 scorecard-0.3.6/scorecard/MD5 | 10 scorecard-0.3.6/scorecard/NEWS.md | 5 scorecard-0.3.6/scorecard/R/woebin.R | 4 scorecard-0.3.6/scorecard/inst/doc/demo.html | 196 ++++++++++++++++- scorecard-0.3.6/scorecard/tests/testthat/test-woebin.R |only 7 files changed, 210 insertions(+), 13 deletions(-)
More information about rankdifferencetest at CRAN
Permanent link
Title: Access the System Credential Store from R
Description: Platform independent 'API' to access the operating system's
credential store. Currently supports: 'Keychain' on 'macOS', Credential
Store on 'Windows', the Secret Service 'API' on 'Linux', and a simple,
platform independent store implemented with environment variables.
Additional storage back-ends can be added easily.
Author: Gábor Csárdi [aut, cre],
Alec Wong [ctb],
RStudio [cph]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between keyring versions 1.2.0 dated 2021-04-28 and 1.3.0 dated 2021-11-29
DESCRIPTION | 8 ++-- MD5 | 28 +++++++-------- NEWS.md | 10 +++++ R/api.R | 20 +++++++--- R/backend-class.R | 10 +++-- R/backend-env.R | 10 +++-- R/backend-file.R | 83 ++++++++++++++++++++++++++++++++++++++++----- R/backend-macos.R | 20 ++++++---- R/backend-secret-service.R | 19 +++++----- R/backend-wincred.R | 21 +++++++---- README.md | 4 +- man/backend.Rd | 3 + man/has_keyring_support.Rd | 6 +-- man/key_get.Rd | 4 +- src/keyring_macos.c | 27 ++++++++++++++ 15 files changed, 201 insertions(+), 72 deletions(-)
Title: Depth Importance in Precision Medicine (DIPM) Method
Description: An implementation of the Depth Importance in Precision Medicine (DIPM) method
in Chen and Zhang (2020) <doi:10.1093/biostatistics/kxaa021> and Chen and
Zhang (2020) <doi:10.1007/978-3-030-46161-4_16>. The DIPM method is a classification
tree that searches for subgroups with especially poor or strong performance in a given treatment group.
Author: Cai Li [aut, cre],
Victoria Chen [aut],
Heping Zhang [aut]
Maintainer: Cai Li <cli9@ncsu.edu>
Diff between dipm versions 1.4 dated 2021-11-18 and 1.5 dated 2021-11-29
DESCRIPTION | 8 MD5 | 4 tests/Examples/dipm-Ex.Rout.save | 421 --------------------------------------- 3 files changed, 7 insertions(+), 426 deletions(-)
Title: Logistic Knowledge Tracing
Description: Computes Logistic Knowledge Tracing ('LKT') which is a general method for tracking human learning in an educational software system. Please see Pavlik, Eglington, and Harrel-Williams (2021) <https://ieeexplore.ieee.org/document/9616435>. 'LKT' is a method to compute features of student data that are used as predictors of subsequent performance. 'LKT' allows great flexibility in the choice of predictive components and features computed for these predictive components. The system is built on top of 'LiblineaR', which enables extremely fast solutions compared to base glm() in R.
Author: Philip I. Pavlik Jr. [aut, ctb, cre]
(<https://orcid.org/0000-0001-6467-9452>),
Luke G. Eglington [aut, ctb] (<https://orcid.org/0000-0002-8432-9203>)
Maintainer: Philip I. Pavlik Jr. <imrryr@gmail.com>
Diff between LKT versions 1.0 dated 2021-06-07 and 1.0.1 dated 2021-11-29
DESCRIPTION | 18 +- MD5 | 23 +-- NAMESPACE | 1 NEWS.md |only R/LKTfunctions.R | 11 - R/data.R | 2 README.md | 300 ++++++++++++++++++++++++++++++++++++++++- build/vignette.rds |binary inst/doc/Basic_Operations.Rmd | 2 inst/doc/Basic_Operations.html | 243 --------------------------------- man/LKT.Rd | 2 man/samplelkt.Rd | 2 vignettes/Basic_Operations.Rmd | 2 13 files changed, 333 insertions(+), 273 deletions(-)
Title: Generate Random Tree-Like Images
Description: A generative art system for producing tree-like
images using an L-system to create the structures. The package
includes tools for generating the data structures and visualise
them in a variety of styles.
Author: Danielle Navarro [aut, cre] (<https://orcid.org/0000-0001-7648-6578>)
Maintainer: Danielle Navarro <djnavarro@protonmail.com>
Diff between flametree versions 0.1.2 dated 2021-04-27 and 0.1.3 dated 2021-11-29
DESCRIPTION | 15 +++++++-------- MD5 | 7 ++++--- NEWS.md |only README.md | 31 +++++++++++++++++++++++++------ man/figures/README-example-1.png |binary 5 files changed, 36 insertions(+), 17 deletions(-)
Title: Financial Data from U.S. Securities and Exchange Commission
Description: Download and display company financial data from the U.S. Securities
and Exchange Commission's EDGAR database. It contains a suite of functions with
web scraping and XBRL parsing capabilities that allows users to extract data from EDGAR
in an automated and scalable manner. See <https://www.sec.gov/edgar/searchedgar/companysearch.html>
for more information.
Author: Seward Lee
Maintainer: Seward Lee <sewardlee337@gmail.com>
Diff between finreportr versions 1.0.2 dated 2020-06-13 and 1.0.3 dated 2021-11-29
DESCRIPTION | 8 - LICENSE | 2 MD5 | 22 ++--- R/annual_reports.R | 2 R/company_info.R | 2 README.md | 8 - build/vignette.rds |binary inst/doc/finreportr.Rmd | 2 inst/doc/finreportr.html | 199 +++-------------------------------------------- man/AnnualReports.Rd | 2 man/CompanyInfo.Rd | 2 vignettes/finreportr.Rmd | 2 12 files changed, 45 insertions(+), 206 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-28 0.0.7
2020-01-31 0.0.4
2019-12-30 0.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-16 7.1
2018-02-15 6.1
2017-06-28 5.1
2016-02-10 4.1
2015-02-09 4.0
2014-10-31 2.0
2014-05-16 1.0
Title: Interactive Analysis of UCSC Xena Data
Description: Provides functions and a Shiny application for downloading,
analyzing and visualizing datasets from UCSC Xena
(<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public
databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Yi Xiong [aut] (<https://orcid.org/0000-0002-4370-9824>),
Longfei Zhao [aut] (<https://orcid.org/0000-0002-6277-0137>),
Kai Gu [aut] (<https://orcid.org/0000-0002-0177-0774>),
Yin Li [aut],
Fei Zhao [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaShiny versions 1.1.2 dated 2021-11-17 and 1.1.3 dated 2021-11-29
UCSCXenaShiny-1.1.2/UCSCXenaShiny/inst/extdata/ccle_drug_response_extend.rda |only UCSCXenaShiny-1.1.3/UCSCXenaShiny/DESCRIPTION | 6 +-- UCSCXenaShiny-1.1.3/UCSCXenaShiny/MD5 | 17 ++++---- UCSCXenaShiny-1.1.3/UCSCXenaShiny/NEWS.md | 5 ++ UCSCXenaShiny-1.1.3/UCSCXenaShiny/build/vignette.rds |binary UCSCXenaShiny-1.1.3/UCSCXenaShiny/inst/doc/api.html | 6 +-- UCSCXenaShiny-1.1.3/UCSCXenaShiny/inst/shinyapp/modules/modules-pcawg-survival-analysis.R | 15 +++++-- UCSCXenaShiny-1.1.3/UCSCXenaShiny/inst/shinyapp/modules/modules-pcawg-unicox.R | 7 +++ UCSCXenaShiny-1.1.3/UCSCXenaShiny/inst/shinyapp/modules/modules-survival-analysis.R | 19 ++++++---- UCSCXenaShiny-1.1.3/UCSCXenaShiny/inst/shinyapp/server/home.R | 4 +- 10 files changed, 50 insertions(+), 29 deletions(-)
Title: Core Tools for Packages in the 'fable' Framework
Description: Provides tools, helpers and data structures for
developing models and time series functions for 'fable' and extension
packages. These tools support a consistent and tidy interface for time
series modelling and analysis.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Di Cook [ctb],
George Athanasopoulos [ctb],
David Holt [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fabletools versions 0.3.1 dated 2021-03-16 and 0.3.2 dated 2021-11-29
DESCRIPTION | 11 +-- MD5 | 115 +++++++++++++++++----------------- NAMESPACE | 5 + NEWS.md | 26 +++++++ R/accessors.R | 2 R/accuracy.R | 67 ++++++++++++++++--- R/aggregate.R | 2 R/broom.R | 12 --- R/components.R | 6 - R/fable.R | 7 -- R/features.R | 5 + R/forecast.R | 12 +-- R/frequency.R | 4 - R/generate.R | 4 - R/hypothesise.R |only R/interpolate.R | 4 - R/mable.R | 19 ++++- R/model.R | 4 - R/model_combination.R | 65 +++++++++++++++---- R/model_decomposition.R | 4 - R/plot.R | 20 +---- R/reconciliation.R | 31 +++++---- R/reexports.R | 4 + R/refit.R | 4 - R/residuals.R | 16 +++- R/specials.R | 2 R/utils.R | 4 + R/vctrs-mable.R | 3 README.md | 2 build/fabletools.pdf |binary inst/WORDLIST | 22 +++--- inst/doc/extension_models.html | 4 - man/accuracy.Rd | 5 - man/agg_vec.Rd | 2 man/augment.Rd | 5 - man/autoplot.dcmp_ts.Rd | 5 - man/autoplot.fbl_ts.Rd | 13 +-- man/autoplot.tbl_ts.Rd | 5 - man/combination_ensemble.Rd | 3 man/combination_model.Rd | 4 - man/combination_weighted.Rd |only man/components.Rd | 7 -- man/decomposition_model.Rd | 5 - man/distribution_accuracy_measures.Rd | 53 +++++++++++++++ man/fabletools-package.Rd | 5 - man/features.Rd | 5 + man/forecast.Rd | 5 - man/generate.mdl_df.Rd | 4 - man/glance.Rd | 4 - man/hypothesize.mdl_df.Rd |only man/interpolate.Rd | 5 - man/mable.Rd | 5 - man/model.Rd | 5 - man/reconcile.Rd | 5 - man/reexports.Rd | 3 man/refit.Rd | 5 - man/skill_score.Rd | 5 - man/tidy.Rd | 5 - tests/testthat/Rplots.pdf |binary tests/testthat/test-graphics.R | 4 - 60 files changed, 413 insertions(+), 245 deletions(-)
Title: Tools for Data Diagnosis, Exploration, Transformation
Description: A collection of tools that support data diagnosis, exploration, and transformation.
Data diagnostics provides information and visualization of missing values and outliers and
unique and negative values to help you understand the distribution and quality of your data.
Data exploration provides information and visualization of the descriptive statistics of
univariate variables, normality tests and outliers, correlation of two variables, and
relationship between target variable and predictor. Data transformation supports binning
for categorizing continuous variables, imputates missing values and outliers, resolving skewness.
And it creates automated reports that support these three tasks.
Author: Choonghyun Ryu [aut, cre]
Maintainer: Choonghyun Ryu <choonghyun.ryu@gmail.com>
Diff between dlookr versions 0.5.2 dated 2021-11-22 and 0.5.3 dated 2021-11-29
dlookr-0.5.2/dlookr/inst/doc/EDA.R |only dlookr-0.5.2/dlookr/inst/doc/diagonosis.R |only dlookr-0.5.2/dlookr/inst/doc/introduce.R |only dlookr-0.5.2/dlookr/inst/doc/transformation.R |only dlookr-0.5.2/dlookr/vignettes/img |only dlookr-0.5.3/dlookr/DESCRIPTION | 8 dlookr-0.5.3/dlookr/MD5 | 238 +- dlookr-0.5.3/dlookr/NEWS | 6 dlookr-0.5.3/dlookr/R/EDA.R | 29 dlookr-0.5.3/dlookr/R/aggregate.R | 98 dlookr-0.5.3/dlookr/R/binning.R | 107 - dlookr-0.5.3/dlookr/R/combination.R | 12 dlookr-0.5.3/dlookr/R/compare.R | 44 dlookr-0.5.3/dlookr/R/correlate.R | 33 dlookr-0.5.3/dlookr/R/diagnose.R | 151 - dlookr-0.5.3/dlookr/R/discribe.R | 21 dlookr-0.5.3/dlookr/R/imputation.R | 27 dlookr-0.5.3/dlookr/R/missing.R | 30 dlookr-0.5.3/dlookr/R/normality.R | 36 dlookr-0.5.3/dlookr/R/overview.R | 4 dlookr-0.5.3/dlookr/R/report.R | 131 - dlookr-0.5.3/dlookr/R/report_tbl_dbi.R | 8 dlookr-0.5.3/dlookr/R/target_by.R | 42 dlookr-0.5.3/dlookr/R/tbl_dbi.R | 486 ++-- dlookr-0.5.3/dlookr/R/transform.R | 58 dlookr-0.5.3/dlookr/R/univariate.R | 50 dlookr-0.5.3/dlookr/build/vignette.rds |binary dlookr-0.5.3/dlookr/inst/doc/EDA.Rmd | 762 ------- dlookr-0.5.3/dlookr/inst/doc/EDA.html | 1276 ------------ dlookr-0.5.3/dlookr/inst/doc/diagonosis.Rmd | 600 ----- dlookr-0.5.3/dlookr/inst/doc/diagonosis.html | 838 ------- dlookr-0.5.3/dlookr/inst/doc/introduce.Rmd | 216 -- dlookr-0.5.3/dlookr/inst/doc/introduce.html | 980 --------- dlookr-0.5.3/dlookr/inst/doc/transformation.Rmd | 482 ---- dlookr-0.5.3/dlookr/inst/doc/transformation.html | 1078 ---------- dlookr-0.5.3/dlookr/man/binning.Rd | 35 dlookr-0.5.3/dlookr/man/binning_by.Rd | 16 dlookr-0.5.3/dlookr/man/compare_category.data.frame.Rd | 10 dlookr-0.5.3/dlookr/man/compare_numeric.data.frame.Rd | 10 dlookr-0.5.3/dlookr/man/correlate.data.frame.Rd | 21 dlookr-0.5.3/dlookr/man/correlate.tbl_dbi.Rd | 36 dlookr-0.5.3/dlookr/man/describe.data.frame.Rd | 21 dlookr-0.5.3/dlookr/man/describe.tbl_dbi.Rd | 12 dlookr-0.5.3/dlookr/man/diagnose.data.frame.Rd | 23 dlookr-0.5.3/dlookr/man/diagnose.tbl_dbi.Rd | 28 dlookr-0.5.3/dlookr/man/diagnose_category.data.frame.Rd | 18 dlookr-0.5.3/dlookr/man/diagnose_category.tbl_dbi.Rd | 56 dlookr-0.5.3/dlookr/man/diagnose_numeric.data.frame.Rd | 18 dlookr-0.5.3/dlookr/man/diagnose_numeric.tbl_dbi.Rd | 32 dlookr-0.5.3/dlookr/man/diagnose_outlier.data.frame.Rd | 26 dlookr-0.5.3/dlookr/man/diagnose_outlier.tbl_dbi.Rd | 32 dlookr-0.5.3/dlookr/man/diagnose_paged_report.data.frame.Rd | 20 dlookr-0.5.3/dlookr/man/diagnose_paged_report.tbl_dbi.Rd | 2 dlookr-0.5.3/dlookr/man/diagnose_report.data.frame.Rd | 18 dlookr-0.5.3/dlookr/man/diagnose_report.tbl_dbi.Rd | 32 dlookr-0.5.3/dlookr/man/diagnose_sparese.data.frame.Rd | 10 dlookr-0.5.3/dlookr/man/diagnose_web_report.data.frame.Rd | 17 dlookr-0.5.3/dlookr/man/diagnose_web_report.tbl_dbi.Rd | 2 dlookr-0.5.3/dlookr/man/eda_paged_report.data.frame.Rd | 20 dlookr-0.5.3/dlookr/man/eda_paged_report.tbl_dbi.Rd | 2 dlookr-0.5.3/dlookr/man/eda_report.data.frame.Rd | 29 dlookr-0.5.3/dlookr/man/eda_report.tbl_dbi.Rd | 80 dlookr-0.5.3/dlookr/man/eda_web_report.data.frame.Rd | 18 dlookr-0.5.3/dlookr/man/eda_web_report.tbl_dbi.Rd | 2 dlookr-0.5.3/dlookr/man/get_column_info.Rd | 14 dlookr-0.5.3/dlookr/man/get_transform.Rd | 2 dlookr-0.5.3/dlookr/man/imputate_outlier.Rd | 9 dlookr-0.5.3/dlookr/man/normality.data.frame.Rd | 12 dlookr-0.5.3/dlookr/man/normality.tbl_dbi.Rd | 26 dlookr-0.5.3/dlookr/man/overview.Rd | 2 dlookr-0.5.3/dlookr/man/performance_bin.Rd | 12 dlookr-0.5.3/dlookr/man/plot.bins.Rd | 14 dlookr-0.5.3/dlookr/man/plot.compare_category.Rd | 10 dlookr-0.5.3/dlookr/man/plot.compare_numeric.Rd | 6 dlookr-0.5.3/dlookr/man/plot.imputation.Rd | 8 dlookr-0.5.3/dlookr/man/plot.optimal_bins.Rd | 2 dlookr-0.5.3/dlookr/man/plot.overview.Rd | 2 dlookr-0.5.3/dlookr/man/plot.performance_bin.Rd | 10 dlookr-0.5.3/dlookr/man/plot.relate.Rd | 4 dlookr-0.5.3/dlookr/man/plot.transform.Rd | 12 dlookr-0.5.3/dlookr/man/plot.univar_category.Rd | 2 dlookr-0.5.3/dlookr/man/plot.univar_numeric.Rd | 14 dlookr-0.5.3/dlookr/man/plot_bar_category.data.frame.Rd | 36 dlookr-0.5.3/dlookr/man/plot_box_numeric.data.frame.Rd | 22 dlookr-0.5.3/dlookr/man/plot_correlate.data.frame.Rd | 12 dlookr-0.5.3/dlookr/man/plot_correlate.tbl_dbi.Rd | 30 dlookr-0.5.3/dlookr/man/plot_hist_numeric.data.frame.Rd | 22 dlookr-0.5.3/dlookr/man/plot_na_hclust.Rd | 8 dlookr-0.5.3/dlookr/man/plot_na_intersect.Rd | 6 dlookr-0.5.3/dlookr/man/plot_na_pareto.Rd | 16 dlookr-0.5.3/dlookr/man/plot_normality.data.frame.Rd | 22 dlookr-0.5.3/dlookr/man/plot_normality.tbl_dbi.Rd | 28 dlookr-0.5.3/dlookr/man/plot_outlier.data.frame.Rd | 44 dlookr-0.5.3/dlookr/man/plot_outlier.target_df.Rd | 2 dlookr-0.5.3/dlookr/man/plot_outlier.tbl_dbi.Rd | 52 dlookr-0.5.3/dlookr/man/plot_qq_numeric.data.frame.Rd | 18 dlookr-0.5.3/dlookr/man/print.relate.Rd | 12 dlookr-0.5.3/dlookr/man/relate.Rd | 12 dlookr-0.5.3/dlookr/man/summary.compare_category.Rd | 4 dlookr-0.5.3/dlookr/man/summary.compare_numeric.Rd | 4 dlookr-0.5.3/dlookr/man/summary.imputation.Rd | 10 dlookr-0.5.3/dlookr/man/summary.optimal_bins.Rd | 8 dlookr-0.5.3/dlookr/man/summary.performance_bin.Rd | 10 dlookr-0.5.3/dlookr/man/summary.transform.Rd | 14 dlookr-0.5.3/dlookr/man/summary.univar_category.Rd | 2 dlookr-0.5.3/dlookr/man/summary.univar_numeric.Rd | 4 dlookr-0.5.3/dlookr/man/target_by.data.frame.Rd | 14 dlookr-0.5.3/dlookr/man/target_by.tbl_dbi.Rd | 20 dlookr-0.5.3/dlookr/man/transform.Rd | 14 dlookr-0.5.3/dlookr/man/transformation_paged_report.Rd | 20 dlookr-0.5.3/dlookr/man/transformation_report.Rd | 16 dlookr-0.5.3/dlookr/man/transformation_web_report.Rd | 18 dlookr-0.5.3/dlookr/man/univar_category.data.frame.Rd | 8 dlookr-0.5.3/dlookr/man/univar_numeric.data.frame.Rd | 20 dlookr-0.5.3/dlookr/vignettes/EDA.Rmd | 762 ------- dlookr-0.5.3/dlookr/vignettes/diagonosis.Rmd | 600 ----- dlookr-0.5.3/dlookr/vignettes/introduce.Rmd | 216 -- dlookr-0.5.3/dlookr/vignettes/transformation.Rmd | 482 ---- 118 files changed, 1711 insertions(+), 9535 deletions(-)
Title: Copula-Based Estimation and Statistical Process Control for
Serially Correlated Time Series
Description: Estimation and statistical process control are performed under
copula-based time-series models.
Available are statistical methods in Long and Emura (2014 JCSA),
Emura et al. (2017 Commun Stat-Simul) <DOI:10.1080/03610918.2015.1073303>,
Huang and Emura (2021 Commun Stat-Simul) <DOI:10.1080/03610918.2019.1602647>,
Lin et al. (2021 Comm Stat-Simul) <DOI:10.1080/03610918.2019.1652318>,
Sun et al. (2020 JSS Series in Statistics)<DOI:10.1007/978-981-15-4998-4>,
and Huang and Emura (2021, in revision).
Author: Takeshi Emura, Xinwei Huang, Ting-Hsuan Long, Li-Hsien Sun
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between Copula.Markov versions 2.8 dated 2020-02-25 and 2.9 dated 2021-11-29
Copula.Markov-2.8/Copula.Markov/data/DowJones.csv.gz |only Copula.Markov-2.9/Copula.Markov/DESCRIPTION | 17 ++--- Copula.Markov-2.9/Copula.Markov/MD5 | 32 +++++----- Copula.Markov-2.9/Copula.Markov/R/Joe.Markov.GOF.binom.R |only Copula.Markov-2.9/Copula.Markov/R/Joe.Markov.MLE.binom.R |only Copula.Markov-2.9/Copula.Markov/data/DowJones.csv |only Copula.Markov-2.9/Copula.Markov/man/Clayton.Markov.DATA.Rd | 2 Copula.Markov-2.9/Copula.Markov/man/Clayton.Markov.DATA.binom.Rd | 6 - Copula.Markov-2.9/Copula.Markov/man/Clayton.Markov.GOF.Rd | 4 - Copula.Markov-2.9/Copula.Markov/man/Clayton.Markov.GOF.binom.Rd | 8 +- Copula.Markov-2.9/Copula.Markov/man/Clayton.Markov.MLE.binom.Rd | 4 - Copula.Markov-2.9/Copula.Markov/man/Clayton.Markov2.DATA.Rd | 6 - Copula.Markov-2.9/Copula.Markov/man/Clayton.Markov2.MLE.Rd | 4 - Copula.Markov-2.9/Copula.Markov/man/Clayton.MixNormal.Markov.MLE.Rd | 4 - Copula.Markov-2.9/Copula.Markov/man/Copula.Markov-package.Rd | 20 +++--- Copula.Markov-2.9/Copula.Markov/man/DowJones.Rd | 3 Copula.Markov-2.9/Copula.Markov/man/Joe.Markov.DATA.Rd | 2 Copula.Markov-2.9/Copula.Markov/man/Joe.Markov.DATA.binom.Rd | 6 - Copula.Markov-2.9/Copula.Markov/man/Joe.Markov.GOF.binom.Rd |only Copula.Markov-2.9/Copula.Markov/man/Joe.Markov.MLE.binom.Rd |only 20 files changed, 63 insertions(+), 55 deletions(-)
Title: An Interface for Content-Based Identifiers
Description: An interface for creating, registering, and resolving content-based
identifiers for data management. Content-based identifiers rely on
the 'cryptographic' hashes to refer to the files they identify, thus,
anyone possessing the file can compute the identifier using a
well-known standard algorithm, such as 'SHA256'. By registering
a URL at which the content is accessible to a public archive (such as
Hash Archive) or depositing data in a scientific repository such 'Zenodo',
'DataONE' or 'SoftwareHeritage', the content identifier can serve
many functions typically associated with A Digital Object Identifier
('DOI'). Unlike location-based identifiers like 'DOIs', content-based
identifiers permit the same content to be registered in many locations.
Author: Carl Boettiger [aut, cre] (<https://orcid.org/0000-0002-1642-628X>),
Jorrit Poelen [aut] (<https://orcid.org/0000-0003-3138-4118>),
NSF OAC 1839201 [fnd]
(https://www.nsf.gov/awardsearch/showAward?AWD_ID=1839201)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between contentid versions 0.0.14 dated 2021-11-07 and 0.0.15 dated 2021-11-29
DESCRIPTION | 6 MD5 | 35 ++-- NEWS.md | 6 R/content_dir.R | 3 R/content_id.R | 13 - R/dataone_registry.R | 15 + R/hash-archive.R | 14 + R/resolve.R | 14 + R/software-heritage.R | 25 +-- R/sources.R | 10 - R/zenodo_registry.R | 20 ++ build/vignette.rds |binary inst/WORDLIST | 9 - inst/doc/intro.html | 279 +++++++++++++++++++++++++++------- inst/examples/hash-archive-dump-api.R |only man/history_swh.Rd | 3 man/retrieve_swh.Rd | 2 man/sources_swh.Rd | 2 man/store_swh.Rd | 3 19 files changed, 352 insertions(+), 107 deletions(-)