Title: Build 'data.table' Expressions with Data Manipulation Verbs
Description: A specialization of 'dplyr' data manipulation verbs that parse and build expressions
which are ultimately evaluated by 'data.table', letting it handle all optimizations. A set of
additional verbs is also provided to facilitate some common operations on a subset of the data.
Author: Alexis Sarda-Espinosa [cre, aut]
Maintainer: Alexis Sarda-Espinosa <alexis.sarda@gmail.com>
Diff between table.express versions 0.3.1 dated 2019-09-07 and 0.3.2 dated 2021-11-30
DESCRIPTION | 13 MD5 | 88 - NAMESPACE | 376 +++--- R/R6-EagerExprBuilder.R | 12 R/R6-ExprBuilder.R | 82 + R/VERBS-mutate_sd.R | 2 build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/joins.Rmd | 2 inst/doc/joins.html | 1480 +++++++++++++------------- inst/doc/table.express.html | 1899 +++++++++++++++++----------------- man/EagerExprBuilder.Rd | 99 + man/ExprBuilder.Rd | 258 ++++ man/arrange-table.express.Rd | 50 man/chain.Rd | 3 man/distinct-table.express.Rd | 9 man/end_expr.Rd | 62 - man/extrema_by.Rd | 18 man/filter-table.express.Rd | 62 - man/filter_on.Rd | 12 man/filter_sd.Rd | 15 man/frame_append.Rd | 3 man/group_by-table.express.Rd | 7 man/joins.Rd | 36 man/key_by.Rd | 7 man/mutate-table.express.Rd | 20 man/mutate_sd.Rd | 18 man/nest_expr.Rd | 8 man/order_by-table.express.Rd | 8 man/reexports.Rd | 10 man/select-table.express.Rd | 13 man/start_expr.Rd | 3 man/summarize-table.express.Rd | 20 man/table.express-package.Rd | 4 man/transmute-table.express.Rd | 11 man/transmute_sd.Rd | 14 man/where-table.express.Rd | 9 tests/testthat/test-90-namespace.R | 2 tests/testthat/unit/test-anti_join.R | 6 tests/testthat/unit/test-group_by.R | 2 tests/testthat/unit/test-inner_join.R | 6 tests/testthat/unit/test-left_join.R | 6 tests/testthat/unit/test-right_join.R | 6 tests/testthat/unit/test-semi_join.R | 8 vignettes/joins.Rmd | 2 45 files changed, 2631 insertions(+), 2141 deletions(-)
Title: Creates and Plots P-Value Functions, S-Value Functions,
Confidence Distributions and Confidence Densities
Description: Contains functions to compute and plot confidence distributions, confidence densities, p-value functions and s-value (surprisal) functions for several commonly used estimates. Instead of just calculating one p-value and one confidence interval, p-value functions display p-values and confidence intervals for many levels thereby allowing to gauge the compatibility of several parameter values with the data. These methods are discussed by Infanger D, Schmidt-Trucksäss A. (2019) <doi:10.1002/sim.8293>; Poole C. (1987) <doi:10.2105/AJPH.77.2.195>; Schweder T, Hjort NL. (2002) <doi:10.1111/1467-9469.00285>; Bender R, Berg G, Zeeb H. (2005) <doi:10.1002/bimj.200410104> ; Singh K, Xie M, Strawderman WE. (2007) <doi:10.1214/074921707000000102>; Rothman KJ, Greenland S, Lash TL. (2008, ISBN:9781451190052); Amrhein V, Trafimow D, Greenland S. (2019) <doi:10.1080/00031305.2018.1543137>; Greenland S. (2019) <doi:10.1080/00031305.2018.1529625> and Rafi Z, Greenland S. (2020) <doi:10.1186/s12874-020-01105-9>.
Author: Denis Infanger [aut, cre] (<https://orcid.org/0000-0001-9028-7110>)
Maintainer: Denis Infanger <denis.infanger@unibas.ch>
Diff between pvaluefunctions versions 1.6.1 dated 2020-12-09 and 1.6.2 dated 2021-11-30
DESCRIPTION | 13 MD5 | 28 NEWS.md | 7 R/confidence_distributions.R | 349 ++++++++-- README.md | 67 +- build/vignette.rds |binary inst/doc/pvaluefun.R | 2 inst/doc/pvaluefun.Rmd | 11 inst/doc/pvaluefun.html | 1198 ++++++++++++++---------------------- man/conf_dist.Rd | 8 man/figures/README-benderfig1-1.png |binary man/figures/README-ttest_pval-1.png |binary man/figures/README-ttest_sval-1.png |binary vignettes/pvaluefun.Rmd | 11 vignettes/pvaluefun.md | 1 15 files changed, 868 insertions(+), 827 deletions(-)
More information about pvaluefunctions at CRAN
Permanent link
Title: API Wrapper Around 'Postcodes.io'
Description: Free UK geocoding using data from Office for National Statistics.
It is using several functions to get information about post codes, outward
codes, reverse geocoding, nearest post codes/outward codes, validation, or
randomly generate a post code. API wrapper around <https://postcodes.io>.
Author: Eryk Walczak [aut, cre] (<https://orcid.org/0000-0001-8724-462X>),
Claudia Vitolo [rev] (<https://orcid.org/0000-0002-4252-1176>),
Robin Lovelace [rev] (<https://orcid.org/0000-0001-5679-6536>)
Maintainer: Eryk Walczak <erykjwalczak@gmail.com>
Diff between PostcodesioR versions 0.3.0 dated 2021-01-07 and 0.3.1 dated 2021-11-30
DESCRIPTION | 13 MD5 | 44 - NAMESPACE | 1 NEWS.md | 2 R/bulk_postcode_lookup.R | 6 R/nearest_postcode.R | 1 R/place_query.R | 2 R/postcode_autocomplete.R | 2 R/postcode_lookup.R | 2 R/postcode_query.R | 2 R/postcode_validation.R | 2 R/scottish_postcode_lookup.R | 2 R/terminated_postcode.R | 3 README.md | 9 build/vignette.rds |binary inst/doc/Introduction.R | 6 inst/doc/Introduction.Rmd | 6 inst/doc/Introduction.html | 694 ++++++++----------------- man/bulk_postcode_lookup.Rd | 4 tests/testthat/test-postcode_lookup.R | 2 tests/testthat/test-postcode_validation.R | 3 tests/testthat/test-scottish_postcode_lookup.R | 8 vignettes/Introduction.Rmd | 6 23 files changed, 310 insertions(+), 510 deletions(-)
Title: Gaussian Process Based Design and Analysis for the Active
Subspace Method
Description: The active subspace method is a sensitivity analysis technique that finds important linear combinations of input variables for a simulator. This package provides functions allowing estimation of the active subspace without gradient information using Gaussian processes as well as sequential experimental design tools to minimize the amount of data required to do so. Implements Wycoff et al. (2019) <arXiv:1907.11572>.
Author: Nathan Wycoff, Mickael Binois
Maintainer: Nathan Wycoff <nathan.wycoff@georgetown.edu>
Diff between activegp versions 1.0.5 dated 2020-10-27 and 1.0.6 dated 2021-11-30
DESCRIPTION | 12 +++++------ MD5 | 8 +++---- NEWS | 6 ++++- src/RcppExports.cpp | 5 ++++ src/kernelexps.cpp | 56 +++++++++++++++++++++++++++------------------------- 5 files changed, 50 insertions(+), 37 deletions(-)
Title: Fix Really Messy Dates
Description: Fixes messy dates in data frames such as those entered via text
boxes. Standardizes / - and whitespace separation, month abbreviations, and
year first or day first by converting to R's built-in Date class. Imputes
missing date or month using user-provided values.
Author: Nathan Constantine-Cooke [aut, cre]
(<https://orcid.org/0000-0002-4437-8713>)
Maintainer: Nathan Constantine-Cooke <nathan.constantine-cooke@ed.ac.uk>
Diff between datefixR versions 0.1.1 dated 2021-11-05 and 0.1.2 dated 2021-11-30
DESCRIPTION | 19 ++++-- MD5 | 23 +++++-- NAMESPACE | 1 NEWS.md | 15 ++++ R/fix_date.R |only R/fix_dates.R | 126 ++++++++++++++++++++++++++++++++-------- README.md | 48 ++++++++++++++- build |only inst |only man/fix_date.Rd |only man/fix_dates.Rd | 11 ++- tests/testthat/test_fix_date.R |only tests/testthat/test_fix_dates.R | 51 +++++++++++++++- vignettes |only 14 files changed, 250 insertions(+), 44 deletions(-)
Title: Robust Statistics: Theory and Methods
Description: Companion package for the book: "Robust Statistics: Theory and Methods, second edition", <http://www.wiley.com/go/maronna/robust>. This package contains code that implements the robust estimators discussed in the recent second edition of the book above, as well as the scripts reproducing all the examples in the book.
Author: Matias Salibian-Barrera [cre],
Victor Yohai [aut],
Ricardo Maronna [aut],
Doug Martin [aut],
Gregory Brownson [aut] (ShinyUI),
Kjell Konis [aut],
Kjell Konis [cph] (erfi),
Christophe Croux [ctb] (WBYlogreg, BYlogreg),
Gentiane Haesbroeck [ctb] (WBYlogreg, BYlogreg),
Martin Maechler [cph] (lmrob.fit, lmrob..M..fit, lmrob.S),
Manuel Koller [cph] (lmrob.fit, .vcov.avar1, lmrob.S, lmrob.lar),
Matias Salibian-Barrera [aut]
Maintainer: Matias Salibian-Barrera <matias@stat.ubc.ca>
Diff between RobStatTM versions 1.0.2 dated 2020-03-02 and 1.0.3 dated 2021-11-30
RobStatTM-1.0.2/RobStatTM/R/ShinyUI.R |only RobStatTM-1.0.2/RobStatTM/R/summary.covfm.R |only RobStatTM-1.0.2/RobStatTM/R/summary.pcompfm.R |only RobStatTM-1.0.2/RobStatTM/README.md |only RobStatTM-1.0.2/RobStatTM/inst/doc/ShinyUI.Rnw |only RobStatTM-1.0.2/RobStatTM/inst/doc/ShinyUI.pdf |only RobStatTM-1.0.2/RobStatTM/inst/etc |only RobStatTM-1.0.2/RobStatTM/inst/shiny-ui |only RobStatTM-1.0.2/RobStatTM/man/ShinyUI.Rd |only RobStatTM-1.0.2/RobStatTM/vignettes/ShinyUI.Rnw |only RobStatTM-1.0.2/RobStatTM/vignettes/img |only RobStatTM-1.0.3/RobStatTM/DESCRIPTION | 20 RobStatTM-1.0.3/RobStatTM/MD5 | 154 +++---- RobStatTM-1.0.3/RobStatTM/NAMESPACE | 11 RobStatTM-1.0.3/RobStatTM/NEWS.md | 53 ++ RobStatTM-1.0.3/RobStatTM/R/DCML.R | 27 - RobStatTM-1.0.3/RobStatTM/R/Multirobu.R | 219 +++++----- RobStatTM-1.0.3/RobStatTM/R/RFPE.R | 50 +- RobStatTM-1.0.3/RobStatTM/R/breslow.dat.R |only RobStatTM-1.0.3/RobStatTM/R/leuk.dat.R |only RobStatTM-1.0.3/RobStatTM/R/lmrob.MM.R | 52 +- RobStatTM-1.0.3/RobStatTM/R/lmrobdet.R | 19 RobStatTM-1.0.3/RobStatTM/R/psiFunUtils.R | 1 RobStatTM-1.0.3/RobStatTM/R/psiFuns.R | 28 + RobStatTM-1.0.3/RobStatTM/R/utils.R | 34 - RobStatTM-1.0.3/RobStatTM/build/vignette.rds |binary RobStatTM-1.0.3/RobStatTM/data/breslow.dat.RData |only RobStatTM-1.0.3/RobStatTM/data/leuk.dat.RData |only RobStatTM-1.0.3/RobStatTM/inst/doc/VignetteRobStatTM.pdf |binary RobStatTM-1.0.3/RobStatTM/inst/doc/VignetteRobStatTM.pdf.asis | 3 RobStatTM-1.0.3/RobStatTM/inst/doc/fitmodelsusingRobStatTM.pdf |only RobStatTM-1.0.3/RobStatTM/inst/doc/fitmodelsusingRobStatTM.pdf.asis |only RobStatTM-1.0.3/RobStatTM/inst/scripts/VignetteRobStatTM.R |only RobStatTM-1.0.3/RobStatTM/inst/scripts/epilepsy.R | 2 RobStatTM-1.0.3/RobStatTM/inst/scripts/fitmodelsRobStatTM.R |only RobStatTM-1.0.3/RobStatTM/inst/scripts/leukemia.R | 2 RobStatTM-1.0.3/RobStatTM/man/BYlogreg.Rd | 3 RobStatTM-1.0.3/RobStatTM/man/MLocDis.Rd | 3 RobStatTM-1.0.3/RobStatTM/man/MMultiSHR.Rd | 14 RobStatTM-1.0.3/RobStatTM/man/Multirobu.Rd | 14 RobStatTM-1.0.3/RobStatTM/man/RockeMulti.Rd | 28 - RobStatTM-1.0.3/RobStatTM/man/WBYlogreg.Rd | 3 RobStatTM-1.0.3/RobStatTM/man/alcohol.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/algae.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/biochem.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/breslow.dat.Rd |only RobStatTM-1.0.3/RobStatTM/man/bus.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/covClassic.Rd | 17 RobStatTM-1.0.3/RobStatTM/man/flour.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/glass.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/hearing.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/huber.Rd |only RobStatTM-1.0.3/RobStatTM/man/image.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/leuk.dat.Rd |only RobStatTM-1.0.3/RobStatTM/man/lmrobM.Rd | 17 RobStatTM-1.0.3/RobStatTM/man/lmrobM.control.Rd | 15 RobStatTM-1.0.3/RobStatTM/man/lmrobdet.control.Rd | 34 + RobStatTM-1.0.3/RobStatTM/man/lmrobdetDCML.Rd | 17 RobStatTM-1.0.3/RobStatTM/man/lmrobdetMM.RFPE.Rd | 18 RobStatTM-1.0.3/RobStatTM/man/lmrobdetMM.Rd | 26 + RobStatTM-1.0.3/RobStatTM/man/mineral.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/mscale.Rd | 11 RobStatTM-1.0.3/RobStatTM/man/neuralgia.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/oats.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/refine.sm.Rd | 14 RobStatTM-1.0.3/RobStatTM/man/resex.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/rob.linear.test.Rd | 10 RobStatTM-1.0.3/RobStatTM/man/shock.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/skin.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/stackloss.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/step.lmrobdetMM.Rd | 16 RobStatTM-1.0.3/RobStatTM/man/vehicle.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/waste.Rd | 4 RobStatTM-1.0.3/RobStatTM/man/wine.Rd | 4 RobStatTM-1.0.3/RobStatTM/src/lmrob.c | 38 + RobStatTM-1.0.3/RobStatTM/vignettes/VignetteRobStatTM.pdf.asis | 3 RobStatTM-1.0.3/RobStatTM/vignettes/fitmodelsusingRobStatTM.lyx |only RobStatTM-1.0.3/RobStatTM/vignettes/fitmodelsusingRobStatTM.pdf.asis |only 78 files changed, 656 insertions(+), 392 deletions(-)
Title: Make Static HTML Documentation for a Package
Description: Generate an attractive and useful website from a source
package. 'pkgdown' converts your documentation, vignettes, 'README',
and more to 'HTML' making it easy to share information about your
package online.
Author: Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>),
Jay Hesselberth [aut] (<https://orcid.org/0000-0002-6299-179X>),
Maëlle Salmon [aut] (<https://orcid.org/0000-0002-2815-0399>),
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between pkgdown versions 1.6.1 dated 2020-09-12 and 2.0.0 dated 2021-11-30
pkgdown-1.6.1/pkgdown/R/build.r |only pkgdown-1.6.1/pkgdown/R/html-tweak.R |only pkgdown-1.6.1/pkgdown/R/package.r |only pkgdown-1.6.1/pkgdown/R/rd.r |only pkgdown-1.6.1/pkgdown/R/render.r |only pkgdown-1.6.1/pkgdown/R/utils.r |only pkgdown-1.6.1/pkgdown/inst/assets |only pkgdown-1.6.1/pkgdown/inst/templates |only pkgdown-1.6.1/pkgdown/tests/testthat/assets/autolink.Rmd |only pkgdown-1.6.1/pkgdown/tests/testthat/assets/autolink.html |only pkgdown-1.6.1/pkgdown/tests/testthat/assets/home-links.html |only pkgdown-1.6.1/pkgdown/tests/testthat/assets/home-page-header.html |only pkgdown-1.6.1/pkgdown/tests/testthat/assets/open-graph/docs |only pkgdown-1.6.1/pkgdown/tests/testthat/assets/reference-fail/docs |only pkgdown-1.6.1/pkgdown/tests/testthat/assets/reference/docs |only pkgdown-1.6.1/pkgdown/tests/testthat/assets/search-site/docs |only pkgdown-1.6.1/pkgdown/tests/testthat/assets/site-orcid |only pkgdown-1.6.1/pkgdown/tests/testthat/assets/tutorials-inst |only pkgdown-1.6.1/pkgdown/tests/testthat/assets/tutorials-vignettes |only pkgdown-1.6.1/pkgdown/tests/testthat/assets/tweak-anchor.html |only pkgdown-1.6.1/pkgdown/tests/testthat/assets/version-formatting/docs |only pkgdown-1.6.1/pkgdown/tests/testthat/test-autolink_html.R |only pkgdown-1.6.1/pkgdown/tests/testthat/test-build-citation-authors.R |only pkgdown-1.6.1/pkgdown/tests/testthat/test-build-reference-index.txt |only pkgdown-1.6.1/pkgdown/tests/testthat/test-build-version.R |only pkgdown-1.6.1/pkgdown/tests/testthat/test-build.r |only pkgdown-1.6.1/pkgdown/tests/testthat/test-build_home.R |only pkgdown-1.6.1/pkgdown/tests/testthat/test-build_site.R |only pkgdown-1.6.1/pkgdown/tests/testthat/test-html-tweak.R |only pkgdown-1.6.1/pkgdown/tests/testthat/test-init-meta.txt |only pkgdown-1.6.1/pkgdown/tests/testthat/test-navbar |only pkgdown-1.6.1/pkgdown/tests/testthat/test-package.r |only pkgdown-1.6.1/pkgdown/tests/testthat/test-rd-example-out.txt |only pkgdown-1.6.1/pkgdown/tests/testthat/test-rd-html-error.txt |only pkgdown-1.6.1/pkgdown/tests/testthat/test-rd-html.txt |only pkgdown-1.6.1/pkgdown/tests/testthat/test-repo-source.txt |only pkgdown-1.6.1/pkgdown/tests/testthat/test-rmarkown-error.txt |only pkgdown-1.6.1/pkgdown/tests/testthat/test-template-content.R |only pkgdown-1.6.1/pkgdown/tests/testthat/test-topics-warnings.txt |only pkgdown-1.6.1/pkgdown/tests/testthat/test-tutorials.R |only pkgdown-1.6.1/pkgdown/vignettes/test/output.Rmd |only pkgdown-2.0.0/pkgdown/DESCRIPTION | 47 pkgdown-2.0.0/pkgdown/MD5 | 545 ++++++---- pkgdown-2.0.0/pkgdown/NAMESPACE | 11 pkgdown-2.0.0/pkgdown/NEWS.md | 385 ++++++- pkgdown-2.0.0/pkgdown/R/build-404.R | 5 pkgdown-2.0.0/pkgdown/R/build-articles.R | 108 + pkgdown-2.0.0/pkgdown/R/build-favicons.R | 15 pkgdown-2.0.0/pkgdown/R/build-footer.R |only pkgdown-2.0.0/pkgdown/R/build-github.R | 37 pkgdown-2.0.0/pkgdown/R/build-home-authors.R | 422 ++----- pkgdown-2.0.0/pkgdown/R/build-home-citation.R | 69 - 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Title: Record Linkage and Epidemiological Case Definitions in R
Description: An R package for record linkage and implementing epidemiological case definitions in R.
Record linkage is implemented either through a multistage deterministic approach or a probabilistic approach.
Matching records are assigned to unique groups. There are mechanisms to address missing data and conflicting matches across linkage stages.
Track and assign events (e.g. sample collection) and periods (e.g. hospital admission) to unique groups based on a case definition.
The tracking process permits several options such as episode lengths and recurrence.
Duplicate events or records can then be identified for removal or further analyses.
Author: Olisaeloka Nsonwu
Maintainer: Olisaeloka Nsonwu <olisa.nsonwu@gmail.com>
Diff between diyar versions 0.3.1 dated 2021-08-09 and 0.4.0 dated 2021-11-30
diyar-0.3.1/diyar/R/d_labels.R |only diyar-0.3.1/diyar/R/panes.R |only diyar-0.3.1/diyar/man/diyar_label.Rd |only diyar-0.3.1/diyar/man/links_wf_probabilistic.Rd |only diyar-0.3.1/diyar/vignettes/fig_e1.png |only diyar-0.3.1/diyar/vignettes/fig_e10.png |only diyar-0.3.1/diyar/vignettes/fig_e11.png |only diyar-0.3.1/diyar/vignettes/fig_e12.png |only diyar-0.3.1/diyar/vignettes/fig_e2.png |only diyar-0.3.1/diyar/vignettes/fig_e3.png |only diyar-0.3.1/diyar/vignettes/fig_e4.png |only diyar-0.3.1/diyar/vignettes/fig_e5.png |only diyar-0.3.1/diyar/vignettes/fig_e6.png |only diyar-0.3.1/diyar/vignettes/fig_e7.png |only diyar-0.3.1/diyar/vignettes/fig_e8.png |only diyar-0.3.1/diyar/vignettes/fig_e9.png |only diyar-0.3.1/diyar/vignettes/fig_p1.png |only diyar-0.3.1/diyar/vignettes/fig_p2.png |only diyar-0.4.0/diyar/DESCRIPTION | 14 diyar-0.4.0/diyar/MD5 | 117 - diyar-0.4.0/diyar/NAMESPACE | 16 diyar-0.4.0/diyar/NEWS.md | 50 diyar-0.4.0/diyar/R/classes.R | 200 ++- diyar-0.4.0/diyar/R/conv_funcs.R | 461 ++++++- diyar-0.4.0/diyar/R/dev_funcs.R | 744 ----------- diyar-0.4.0/diyar/R/encode.R |only diyar-0.4.0/diyar/R/episode_group.R | 1572 ------------------------ diyar-0.4.0/diyar/R/episodes.R |only diyar-0.4.0/diyar/R/err_checks.R | 268 ++-- diyar-0.4.0/diyar/R/eval_sub_criteria.R |only diyar-0.4.0/diyar/R/link_records.R |only diyar-0.4.0/diyar/R/links.R |only diyar-0.4.0/diyar/R/make_ids.R |only diyar-0.4.0/diyar/R/make_pairs.R |only diyar-0.4.0/diyar/R/merge_identifiers.R |only diyar-0.4.0/diyar/R/overlap.R | 21 diyar-0.4.0/diyar/R/partitions.R |only diyar-0.4.0/diyar/R/predefined_tests.R | 58 diyar-0.4.0/diyar/R/record_group.R | 861 ------------- diyar-0.4.0/diyar/R/reframe.R |only diyar-0.4.0/diyar/R/schema.R | 14 diyar-0.4.0/diyar/R/sub_criteria.R | 205 --- diyar-0.4.0/diyar/README.md | 102 - diyar-0.4.0/diyar/build/vignette.rds |binary diyar-0.4.0/diyar/inst/doc/episodes.R | 562 +------- diyar-0.4.0/diyar/inst/doc/episodes.Rmd | 692 +--------- diyar-0.4.0/diyar/inst/doc/episodes.html | 885 ++++--------- diyar-0.4.0/diyar/inst/doc/links.R | 350 +---- diyar-0.4.0/diyar/inst/doc/links.Rmd | 475 +------ diyar-0.4.0/diyar/inst/doc/links.html | 874 +++++-------- diyar-0.4.0/diyar/inst/doc/number_line.Rmd | 4 diyar-0.4.0/diyar/inst/doc/number_line.html | 28 diyar-0.4.0/diyar/inst/doc/overview.R |only diyar-0.4.0/diyar/inst/doc/overview.Rmd |only diyar-0.4.0/diyar/inst/doc/overview.html |only diyar-0.4.0/diyar/inst/doc/panes.R |only diyar-0.4.0/diyar/inst/doc/panes.Rmd |only diyar-0.4.0/diyar/inst/doc/panes.html |only diyar-0.4.0/diyar/man/custom_sort.Rd | 2 diyar-0.4.0/diyar/man/d_report.Rd |only diyar-0.4.0/diyar/man/encode.Rd |only diyar-0.4.0/diyar/man/episode_group.Rd |only diyar-0.4.0/diyar/man/episodes.Rd | 209 --- diyar-0.4.0/diyar/man/episodes_wf_splits.Rd |only diyar-0.4.0/diyar/man/eval_sub_criteria.Rd |only diyar-0.4.0/diyar/man/link_records.Rd |only diyar-0.4.0/diyar/man/links.Rd | 55 diyar-0.4.0/diyar/man/make_ids.Rd |only diyar-0.4.0/diyar/man/make_pairs.Rd |only diyar-0.4.0/diyar/man/merge_identifiers.Rd |only diyar-0.4.0/diyar/man/partitions.Rd | 11 diyar-0.4.0/diyar/man/predefined_tests.Rd | 17 diyar-0.4.0/diyar/man/record_group.Rd |only diyar-0.4.0/diyar/man/reframe.Rd |only diyar-0.4.0/diyar/man/schema.Rd | 2 diyar-0.4.0/diyar/man/sub_criteria.Rd | 71 - diyar-0.4.0/diyar/man/windows.Rd | 2 diyar-0.4.0/diyar/vignettes/episodes.Rmd | 692 +--------- diyar-0.4.0/diyar/vignettes/fig_o1.png |only diyar-0.4.0/diyar/vignettes/fig_o2.png |only diyar-0.4.0/diyar/vignettes/links.Rmd | 475 +------ diyar-0.4.0/diyar/vignettes/number_line.Rmd | 4 diyar-0.4.0/diyar/vignettes/overview.Rmd |only diyar-0.4.0/diyar/vignettes/panes.Rmd |only 84 files changed, 2565 insertions(+), 7548 deletions(-)
More information about AustralianPoliticians at CRAN
Permanent link
Title: A Driver Discovery Tool for Cancer Whole Genomes
Description: A method for finding an enrichment of cancer simple somatic mutations (SNVs and Indels) in functional elements across the human genome. 'ActiveDriverWGS' detects coding and noncoding driver elements using whole genome sequencing data. The method is part of the following publication: Candidate Cancer Driver Mutations in Distal Regulatory Elements and Long-Range Chromatin Interaction Networks. Molecular Cell (2020) <doi:10.1016/j.molcel.2019.12.027>.
Author: Juri Reimand [aut, cre],
Helen Zhu [aut]
Maintainer: Juri Reimand <juri.reimand@utoronto.ca>
Diff between ActiveDriverWGS versions 1.1.1 dated 2020-09-17 and 1.1.2 dated 2021-11-30
DESCRIPTION | 16 ++++++++-------- MD5 | 22 +++++++++++----------- NEWS.md | 6 ++++-- R/ADWGS_test.R | 5 ++++- R/ActiveDriverWGS.R | 19 ++++++++++++------- R/cll-data.R | 2 +- README.md | 5 +---- build/vignette.rds |binary inst/doc/ActiveDriverWGSR.html | 19 ++++++++++++++++++- man/cll_mutations.Rd | 2 +- tests/testthat/test_ADWGS_test.R | 1 + tests/testthat/test_input_format.R | 2 +- 12 files changed, 62 insertions(+), 37 deletions(-)
More information about ActiveDriverWGS at CRAN
Permanent link
Title: Detecting UN Sustainable Development Goals in Text
Description: The United Nations’ Sustainable Development Goals (SDGs) have become an important guideline for organisations to monitor and plan their contributions to social, economic, and environmental transformations. The 'text2sdg' package is an open-source analysis package that identifies SDGs in text using scientifically developed query systems, opening up the opportunity to monitor any type of text-based data, such as scientific output or corporate publications.
Author: Dirk U. Wulff [aut] (<https://orcid.org/0000-0002-4008-8022>),
Dominik S. Meier [aut, cre] (<https://orcid.org/0000-0002-3999-1388>),
Rui Mata [ctb] (<https://orcid.org/0000-0002-1679-906X>)
Maintainer: Dominik S. Meier <dominikmeier@outlook.com>
Diff between text2sdg versions 0.1.1 dated 2021-11-07 and 0.1.2 dated 2021-11-30
DESCRIPTION | 6 ++-- MD5 | 22 ++++++++-------- NEWS.md | 7 +++++ R/detect.R | 5 +++ R/detect_any.R | 3 ++ R/elsevier.R | 8 +++++ build/vignette.rds |binary data/projects.RData |binary inst/doc/text2sdg.R | 8 ++--- inst/doc/text2sdg.Rmd | 2 - inst/doc/text2sdg.html | 67 ++++++++++++++++++++----------------------------- vignettes/text2sdg.Rmd | 2 - 12 files changed, 71 insertions(+), 59 deletions(-)
Title: Read Rectangular Text Data
Description: The goal of 'readr' is to provide a fast and
friendly way to read rectangular data (like 'csv', 'tsv', and 'fwf').
It is designed to flexibly parse many types of data found in the wild,
while still cleanly failing when data unexpectedly changes.
Author: Hadley Wickham [aut],
Jim Hester [aut],
Romain Francois [ctb],
Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
RStudio [cph, fnd],
https://github.com/mandreyel/ [cph] (mio library),
Jukka Jylänki [ctb, cph] (grisu3 implementation),
Mikkel Jørgensen [ctb, cph] (grisu3 implementation)
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between readr versions 2.1.0 dated 2021-11-11 and 2.1.1 dated 2021-11-30
DESCRIPTION | 21 ++++++---- MD5 | 50 +++++++++++++------------ NEWS.md | 6 +++ R/melt_delim.R | 3 + R/melt_fwf.R | 3 + R/melt_table.R | 3 + R/read_builtin.R | 6 --- README.md | 14 +++---- build/readr.pdf |binary inst/WORDLIST | 66 +++++++++++++++------------------ inst/doc/locales.R | 70 +++++++++++++++++------------------ inst/doc/locales.Rmd | 5 +- inst/doc/locales.html | 74 ++++++++++++------------------------- man/melt_delim.Rd | 2 - man/melt_fwf.Rd | 2 - man/melt_table.Rd | 2 - man/read_builtin.Rd | 6 --- man/readr-package.Rd | 3 + src/QiParsers.h | 5 ++ src/cpp11.cpp | 31 +-------------- tests/testthat/_snaps/edition-1 |only tests/testthat/_snaps/edition-2 |only tests/testthat/helper.R | 4 ++ tests/testthat/test-read-builtin.R | 28 +++++++------- tests/testthat/test-read-csv.R | 20 ++++++++-- tests/testthat/test-write.R | 6 ++- vignettes/locales.Rmd | 5 +- 27 files changed, 208 insertions(+), 227 deletions(-)
Title: Simulate Evapotranspiration and Soil Moisture with the SVAT
Model LWF-Brook90
Description: Provides a flexible and easy-to use interface for the soil vegetation
atmosphere transport (SVAT) model LWF-BROOK90, written in Fortran.
The model simulates daily transpiration, interception, soil and snow evaporation,
streamflow and soil water fluxes through a soil profile covered with vegetation,
as described in Hammel & Kennel (2001, ISBN:978-3-933506-16-0) and Federer et al. (2003)
<doi:10.1175/1525-7541(2003)004%3C1276:SOAETS%3E2.0.CO;2>. A set of high-level functions
for model set up, execution and parallelization provides easy access to plot-level SVAT
simulations, as well as multi-run and large-scale applications.
Author: Paul Schmidt-Walter [aut, cre]
(<https://orcid.org/0000-0003-2699-0893>),
Volodymyr Trotsiuk [aut] (<https://orcid.org/0000-0002-8363-656X>),
Klaus Hammel [aut],
Martin Kennel [aut],
Anthony Federer [aut],
Robert Nuske [ctb] (<https://orcid.org/0000-0001-9773-2061>),
Bavarian State Institute of Forestry (LWF) [cph, fnd],
Northwest German Forest Research Institute (NW-FVA) [cph, fnd]
Maintainer: Paul Schmidt-Walter <paulsw@posteo.de>
Diff between LWFBrook90R versions 0.4.4 dated 2021-02-24 and 0.4.5 dated 2021-11-30
DESCRIPTION | 8 ++-- MD5 | 55 +++++++++++++++------------- NEWS.md | 13 ++++++ R/MakeRoots.R | 3 + R/data.R | 9 ++++ R/runLWFB90.R | 56 +++++++++++++++++++++++------ R/setparms_LWFB90.R | 2 - R/soil_to_param.R | 42 ++++++++++------------ R/sysdata.rda |binary README.md | 12 ++---- build/vignette.rds |binary data/slb1_prec2013_hh.rda |only inst/doc/intro_LWFB90.html | 54 ++++++++++++++++------------ inst/doc/multiruns.R | 8 ++-- inst/doc/multiruns.Rmd | 22 +++++------ inst/doc/multiruns.html | 32 ++++++++++------ man/figures/README-unnamed-chunk-5-1.png |binary man/run_LWFB90.Rd | 7 +++ man/set_paramLWFB90.Rd | 2 - man/slb1_prec2013_hh.Rd |only src/VARDCL.h | 5 +- src/md_brook90.f95 | 59 +++++++++++++++---------------- src/output_day.h | 5 ++ src/skeleton.c | 2 - tests/testthat/test-msiterunLWFB90.R | 2 - tests/testthat/test-options.R |only tests/testthat/test-output_vs_b90exe.R | 2 - tests/testthat/test-runLWFB90.R | 49 ++++++++++++++++++++++++- tests/testthat/test-runLWFB90_errors.R | 39 +++++++++++++++++--- vignettes/multiruns.Rmd | 22 +++++------ 30 files changed, 333 insertions(+), 177 deletions(-)
Title: Parse XML
Description: Work with XML files using a simple, consistent
interface. Built on top of the 'libxml2' C library.
Author: Hadley Wickham [aut, cre],
Jim Hester [aut],
Jeroen Ooms [aut],
RStudio [cph],
R Foundation [ctb] (Copy of R-project homepage cached as example)
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between xml2 versions 1.3.2 dated 2020-04-23 and 1.3.3 dated 2021-11-30
DESCRIPTION | 21 - LICENSE |only MD5 | 38 +- NEWS.md | 18 + R/xml_find.R | 41 +-- R/xml_write.R | 6 README.md | 2 build/vignette.rds |binary build/xml2.pdf |binary inst/doc/modification.Rmd | 2 inst/doc/modification.html | 546 +++++++++++++--------------------------- inst/include/xml2_types.h | 15 + man/xml_find_all.Rd | 28 +- src/Makevars.in | 2 src/Makevars.ucrt |only src/Makevars.win | 4 src/xml2_node.cpp | 6 src/xml2_xpath.cpp | 3 tests/testthat/test-write_xml.R | 15 - tests/testthat/test-xml_find.R | 18 + vignettes/modification.Rmd | 2 21 files changed, 345 insertions(+), 422 deletions(-)
Title: Run Code 'With' Temporarily Modified Global State
Description: A set of functions to run code 'with' safely and
temporarily modified global state. Many of these functions were
originally a part of the 'devtools' package, this provides a simple
package with limited dependencies to provide access to these
functions.
Author: Jim Hester [aut],
Lionel Henry [aut, cre],
Kirill Müller [aut],
Kevin Ushey [aut],
Hadley Wickham [aut],
Winston Chang [aut],
Jennifer Bryan [ctb],
Richard Cotton [ctb],
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between withr versions 2.4.2 dated 2021-04-18 and 2.4.3 dated 2021-11-30
DESCRIPTION | 31 +++++++++------- MD5 | 55 +++++++++++++++------------- NAMESPACE | 2 + NEWS.md | 15 +++++++ R/compat-defer.R | 2 + R/db.R | 4 +- R/language.R |only R/makevars.R | 2 + R/seed.R | 27 ++++++++----- README.md | 60 +++++++++++++++---------------- build/vignette.rds |binary man/figures/README-unnamed-chunk-3-1.png |binary man/with_language.Rd |only man/withr.Rd | 3 + tests/testthat/_snaps |only tests/testthat/test-connection.R | 2 - tests/testthat/test-db.R | 2 - tests/testthat/test-defer.R | 20 ++++++---- tests/testthat/test-devices.R | 2 - tests/testthat/test-file.R | 2 - tests/testthat/test-language.R |only tests/testthat/test-local.R | 15 ++++++- tests/testthat/test-namespace.R | 2 - tests/testthat/test-rng.R | 2 - tests/testthat/test-sink.R | 2 - tests/testthat/test-tempdir.R | 2 - tests/testthat/test-tempfile.R | 2 - tests/testthat/test-timezone.R | 2 - tests/testthat/test-with.R | 27 ++++++++++--- tests/testthat/test-wrap.R | 3 - 30 files changed, 165 insertions(+), 121 deletions(-)
Title: Read and Write Rectangular Text Data Quickly
Description: The goal of 'vroom' is to read and write data (like
'csv', 'tsv' and 'fwf') quickly. When reading it uses a quick initial
indexing step, then reads the values lazily , so only the data you
actually use needs to be read. The writer formats the data in
parallel and writes to disk asynchronously from formatting.
Author: Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>),
Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
https://github.com/mandreyel/ [cph] (mio library),
Jukka Jylänki [cph] (grisu3 implementation),
Mikkel Jørgensen [cph] (grisu3 implementation),
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between vroom versions 1.5.6 dated 2021-11-10 and 1.5.7 dated 2021-11-30
DESCRIPTION | 18 +++++++++++------ MD5 | 32 +++++++++++++++---------------- NEWS.md | 10 +++++++++ build/vroom.pdf |binary inst/WORDLIST | 2 + inst/doc/vroom.html | 2 - man/vroom-package.Rd | 3 +- src/DateTimeParser.h | 7 +++++- src/delimited_index.h | 2 - src/fixed_width_index.h | 1 src/index.h | 10 ++++++--- src/index_collection.cc | 22 --------------------- src/index_collection.h | 2 - src/iterator.h | 12 ----------- src/utils.h | 25 +++++++++++++++--------- src/vroom_dbl.cc | 40 +++++++++++++++++++++------------------ tests/testthat/test-multi-file.R | 7 ++++++ 17 files changed, 102 insertions(+), 93 deletions(-)
Title: Collection of Household Survey Packages Conducted by IBGE
Description: Provides access to packages developed for downloading, reading and analyzing microdata
from household surveys conducted by Brazilian Institute of Geography and Statistics - IBGE.
More information can be obtained from the official website <https://www.ibge.gov.br/>.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between SIPDIBGE versions 0.1.5 dated 2021-10-05 and 0.1.6 dated 2021-11-30
DESCRIPTION | 21 +++++++++++---------- MD5 | 28 ++++++++++++++-------------- NEWS.md | 10 +++++++--- R/sipd_conflicts.R | 22 +++++++++++----------- R/sipd_deps.R | 22 +++++++++++----------- R/sipd_logo.R | 22 +++++++++++----------- R/sipd_packages.R | 22 +++++++++++----------- R/sipd_sitrep.R | 32 ++++++++++++++++---------------- R/sipd_update.R | 22 +++++++++++----------- man/sipd_conflicts.Rd | 8 ++++---- man/sipd_deps.Rd | 8 ++++---- man/sipd_logo.Rd | 8 ++++---- man/sipd_packages.Rd | 8 ++++---- man/sipd_sitrep.Rd | 8 ++++---- man/sipd_update.Rd | 8 ++++---- 15 files changed, 127 insertions(+), 122 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible, and comprehensive framework for
quantitative text analysis in R. Provides functionality for corpus management,
creating and manipulating tokens and ngrams, exploring keywords in context,
forming and manipulating sparse matrices
of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and
distances, applying content dictionaries, applying supervised and unsupervised machine learning,
visually representing text and text analyses, and more.
Author: Kenneth Benoit [cre, aut, cph]
(<https://orcid.org/0000-0002-0797-564X>),
Kohei Watanabe [aut] (<https://orcid.org/0000-0001-6519-5265>),
Haiyan Wang [aut] (<https://orcid.org/0000-0003-4992-4311>),
Paul Nulty [aut] (<https://orcid.org/0000-0002-7214-4666>),
Adam Obeng [aut] (<https://orcid.org/0000-0002-2906-4775>),
Stefan Müller [aut] (<https://orcid.org/0000-0002-6315-4125>),
Akitaka Matsuo [aut] (<https://orcid.org/0000-0002-3323-6330>),
William Lowe [aut] (<https://orcid.org/0000-0002-1549-6163>),
Christian Müller [ctb],
European Research Council [fnd] (ERC-2011-StG 283794-QUANTESS)
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 3.1.0 dated 2021-08-17 and 3.2.0 dated 2021-11-30
DESCRIPTION | 8 +-- MD5 | 74 ++++++++++++++++++------------------ NEWS.md | 16 ++++++- R/casechange-functions.R | 8 ++- R/convert.R | 2 R/dfm.R | 25 +++++++----- R/dfm_group.R | 3 - R/dfm_lookup.R | 4 - R/dfm_select.R | 23 +++++++++-- R/kwic.R | 1 R/tokens.R | 4 - R/tokens_compound.R | 2 R/tokens_lookup.R | 3 - R/wordstem.R | 23 ++++++----- README.md | 4 - build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 12 ----- inst/doc/quickstart.R | 2 inst/doc/quickstart.Rmd | 2 inst/doc/quickstart.html | 2 man/convert-wrappers.Rd | 3 - man/convert.Rd | 3 - man/dfm_select.Rd | 5 +- man/phrase.Rd | 4 - man/tokens_compound.Rd | 2 man/tokens_wordstem.Rd | 9 +++- tests/testthat/test-casechanges.R | 18 ++++++++ tests/testthat/test-corpus_group.R | 29 ++++++++++++++ tests/testthat/test-dfm.R | 37 ++++++++++++++---- tests/testthat/test-dfm_group.R | 47 ++++++++++++++++++++++ tests/testthat/test-dfm_lookup.R | 15 +++++++ tests/testthat/test-dfm_select.R | 66 +++++++++++++++++++++++++++++++- tests/testthat/test-empty-objects.R | 2 tests/testthat/test-tokens_group.R | 26 ++++++++++++ tests/testthat/test-tokens_lookup.R | 12 +++-- tests/testthat/test-wordstem.R | 13 ++++++ vignettes/quickstart.Rmd | 2 38 files changed, 400 insertions(+), 111 deletions(-)
Title: Downloading, Reading and Analyzing POF Microdata
Description: Provides tools for downloading, reading and analyzing the POF,
a household survey from Brazilian Institute of Geography and Statistics - IBGE.
The data must be downloaded from the official website <https://www.ibge.gov.br/>.
Further analysis must be made using package 'survey'.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between POFIBGE versions 0.1.4 dated 2021-10-15 and 0.1.5 dated 2021-11-30
DESCRIPTION | 17 +++++++++-------- MD5 | 28 ++++++++++++++-------------- R/example.R | 12 ++++++------ R/get_pof.R | 10 +++++----- R/pof_deflator.R | 23 ++++++++++++++--------- R/pof_design.R | 6 +++--- R/pof_labeller.R | 6 +++--- R/read_pof.R | 6 +++--- README.md | 6 +++--- man/get_pof.Rd | 8 ++++---- man/pof_deflator.Rd | 8 ++++---- man/pof_design.Rd | 4 ++-- man/pof_example.Rd | 10 +++++----- man/pof_labeller.Rd | 2 +- man/read_pof.Rd | 2 +- 15 files changed, 77 insertions(+), 71 deletions(-)
Title: Downloading, Reading and Analyzing PNS Microdata
Description: Provides tools for downloading, reading and analyzing the PNS,
a household survey from Brazilian Institute of Geography and Statistics - IBGE.
The data must be downloaded from the official website <https://www.ibge.gov.br/>.
Further analysis must be made using package 'survey'.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between PNSIBGE versions 0.1.5 dated 2021-10-15 and 0.1.6 dated 2021-11-30
DESCRIPTION | 17 +++++++++-------- MD5 | 28 ++++++++++++++-------------- R/example.R | 12 ++++++------ R/get_pns.R | 10 +++++----- R/pns_deflator.R | 23 ++++++++++++++--------- R/pns_design.R | 6 +++--- R/pns_labeller.R | 6 +++--- R/read_pns.R | 6 +++--- README.md | 6 +++--- man/get_pns.Rd | 8 ++++---- man/pns_deflator.Rd | 8 ++++---- man/pns_design.Rd | 4 ++-- man/pns_example.Rd | 10 +++++----- man/pns_labeller.Rd | 2 +- man/read_pns.Rd | 2 +- 15 files changed, 77 insertions(+), 71 deletions(-)
Title: Downloading, Reading and Analyzing PNADC Microdata
Description: Provides tools for downloading, reading and analyzing the PNADC,
a household survey from Brazilian Institute of Geography and Statistics - IBGE.
The data must be downloaded from the official website <https://www.ibge.gov.br/>.
Further analysis must be made using package 'survey'.
Author: Douglas Braga [aut],
Gabriel Assuncao [aut, cre],
Luna Hidalgo [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between PNADcIBGE versions 0.6.5 dated 2021-06-24 and 0.7.0 dated 2021-11-30
DESCRIPTION | 19 ++++++++++--------- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 2 +- R/example.R | 12 ++++++------ R/get_pnadc.R | 22 +++++++++++++++++----- R/pnadc_deflator.R | 13 +++++++++---- R/pnadc_design.R | 47 +++++++++++++++++++++++++++++++++++++++-------- R/pnadc_labeller.R | 12 +++++++----- R/read_pnadc.R | 9 +++++---- README.md | 6 +++--- man/get_pnadc.Rd | 6 +++--- man/pnadc_deflator.Rd | 2 +- man/pnadc_design.Rd | 4 ++-- man/pnadc_example.Rd | 10 +++++----- man/pnadc_labeller.Rd | 2 +- man/read_pnadc.Rd | 2 +- 16 files changed, 125 insertions(+), 73 deletions(-)
Title: Simulate Package Installation and Attach
Description: Simulates the process of installing a package and then
attaching it. This is a key part of the 'devtools' package as it
allows you to rapidly iterate while developing a package.
Author: Hadley Wickham [aut],
Winston Chang [aut],
Jim Hester [aut],
Lionel Henry [aut, cre],
RStudio [cph],
R Core team [ctb] (Some namespace and vignette code extracted from base
R)
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between pkgload versions 1.2.3 dated 2021-10-13 and 1.2.4 dated 2021-11-30
DESCRIPTION | 24 +++++++++++++----------- MD5 | 17 ++++++++++++----- NEWS.md | 6 ++++++ R/load.r | 4 ++++ R/po.R |only README.md | 2 +- man/load_all.Rd | 2 ++ tests/testthat/test-po.R |only tests/testthat/testTranslations |only 9 files changed, 38 insertions(+), 17 deletions(-)
Title: Estimation and Prediction Methods for High-Dimensional Mixed
Frequency Time Series Data
Description: The 'midasml' package implements estimation and prediction methods for high-dimensional mixed-frequency (MIDAS) time-series and panel data regression models. The regularized MIDAS models are estimated using orthogonal (e.g. Legendre) polynomials and sparse-group LASSO (sg-LASSO) estimator. For more information on the 'midasml' approach see Babii, Ghysels, and Striaukas (2021, JBES forthcoming) <doi:10.1080/07350015.2021.1899933>. The package is equipped with the fast implementation of the sg-LASSO estimator by means of proximal block coordinate descent. High-dimensional mixed frequency time-series data can also be easily manipulated with functions provided in the package.
Author: Jonas Striaukas [cre, aut],
Andrii Babii [aut],
Eric Ghysels [aut],
Alex Kostrov [ctb] (Contributions to analytical gradients for
non-linear low-dimensional MIDAS estimation code)
Maintainer: Jonas Striaukas <jonas.striaukas@gmail.com>
Diff between midasml versions 0.1.5-1 dated 2021-05-20 and 0.1.6 dated 2021-11-30
midasml-0.1.5-1/midasml/README.md |only midasml-0.1.6/midasml/DESCRIPTION | 8 midasml-0.1.6/midasml/MD5 | 49 midasml-0.1.6/midasml/NAMESPACE | 70 - midasml-0.1.6/midasml/R/cv.panel.sglfit.R | 296 ++--- midasml-0.1.6/midasml/R/cv.sglfit.R | 264 ++-- midasml-0.1.6/midasml/R/data.R | 218 +-- midasml-0.1.6/midasml/R/date.functions.R | 1454 ++++++++++++------------- midasml-0.1.6/midasml/R/ic.panel.sglfit.R | 162 +- midasml-0.1.6/midasml/R/ic.sglfit.R | 160 +- midasml-0.1.6/midasml/R/midas.polynomials.R | 194 +-- midasml-0.1.6/midasml/R/midas.solvers.R | 1578 ++++++++++++++-------------- midasml-0.1.6/midasml/R/midasml-package.R | 16 midasml-0.1.6/midasml/R/predict.cv.sglfit.R | 134 +- midasml-0.1.6/midasml/R/predict.ic.sglfit.R | 142 +- midasml-0.1.6/midasml/R/predict.sglpath.R | 96 - midasml-0.1.6/midasml/R/reg.midas.R | 132 +- midasml-0.1.6/midasml/R/reg.panel.sgl.R | 156 +- midasml-0.1.6/midasml/R/reg.sgl.R | 134 +- midasml-0.1.6/midasml/R/sglfit.R | 242 ++-- midasml-0.1.6/midasml/R/sglfitpath.R | 90 - midasml-0.1.6/midasml/R/utilities.R | 388 +++--- midasml-0.1.6/midasml/src/auxiliary.f90 | 254 ++-- midasml-0.1.6/midasml/src/maxlambda.f90 | 322 ++--- midasml-0.1.6/midasml/src/panelsglfitF.f90 | 184 +-- midasml-0.1.6/midasml/src/sglfitF.f90 | 921 ++++++++-------- 26 files changed, 3827 insertions(+), 3837 deletions(-)
More information about EpiSignalDetection at CRAN
Permanent link
Title: Downloading, Reading and Analyzing PNAD COVID19 Microdata
Description: Provides tools for downloading, reading and analyzing the PNAD COVID19,
a household survey from Brazilian Institute of Geography and Statistics - IBGE.
The data must be downloaded from the official website <https://www.ibge.gov.br/>.
Further analysis must be made using package 'survey'.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between COVIDIBGE versions 0.1.7 dated 2021-11-03 and 0.1.8 dated 2021-11-30
DESCRIPTION | 17 +++++++++-------- MD5 | 28 ++++++++++++++-------------- R/covid_deflator.R | 26 +++++++++++++++++++++----- R/covid_design.R | 6 +++--- R/covid_labeller.R | 22 +++------------------- R/example.R | 12 ++++++------ R/get_covid.R | 8 ++++---- R/read_covid.R | 24 ++++++++++++++++++++---- README.md | 6 +++--- man/covid_deflator.Rd | 2 +- man/covid_design.Rd | 4 ++-- man/covid_example.Rd | 10 +++++----- man/covid_labeller.Rd | 2 +- man/get_covid.Rd | 6 +++--- man/read_covid.Rd | 2 +- 15 files changed, 96 insertions(+), 79 deletions(-)
Title: Run CRAN URL Checks from Older R Versions
Description: Provide the URL checking tools available in R 4.1+ as a
package for earlier versions of R. Also uses concurrent requests so
can be much faster than the serial versions.
Author: R Core team [aut] (The code in urltools.R adapted from the tools
package),
Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>),
Gábor Csárdi [aut, cre],
RStudio [cph, fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between urlchecker versions 1.0.0 dated 2021-03-04 and 1.0.1 dated 2021-11-30
urlchecker-1.0.0/urlchecker/R/backports.R |only urlchecker-1.0.1/urlchecker/DESCRIPTION | 45 ++++++++++------------ urlchecker-1.0.1/urlchecker/MD5 | 11 ++--- urlchecker-1.0.1/urlchecker/NEWS.md |only urlchecker-1.0.1/urlchecker/R/zzz.R | 3 + urlchecker-1.0.1/urlchecker/README.md | 2 urlchecker-1.0.1/urlchecker/inst/tools/urltools.R | 9 +++- urlchecker-1.0.1/urlchecker/inst/tools/utils.R |only 8 files changed, 40 insertions(+), 30 deletions(-)
Title: R Package Installation from Remote Repositories, Including
'GitHub'
Description: Download and install R packages stored in 'GitHub', 'GitLab',
'Bitbucket', 'Bioconductor', or plain 'subversion' or 'git' repositories.
This package provides the 'install_*' functions in 'devtools'. Indeed most
of the code was copied over from 'devtools'.
Author: Gábor Csárdi [aut, cre],
Jim Hester [aut],
Hadley Wickham [aut],
Winston Chang [aut],
RStudio [cph],
Martin Morgan [aut],
Dan Tenenbaum [aut],
Mango Solutions [cph]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between remotes versions 2.4.1 dated 2021-09-29 and 2.4.2 dated 2021-11-30
DESCRIPTION | 18 +++++----- MD5 | 36 ++++++++++---------- NEWS.md | 7 ++++ R/bioc-standalone.R | 2 - R/install-git.R | 10 ++++- R/install-github.R | 3 + R/install-gitlab.R | 3 + R/system_requirements.R | 18 ++++++---- README.md | 2 - build/vignette.rds |binary inst/doc/dependencies.html | 4 +- inst/install-github.R | 36 +++++++++++++------- man/github_remote.Rd | 3 + man/install_github.Rd | 3 + man/install_gitlab.Rd | 3 + man/system_requirements.Rd | 5 +- tests/testthat/test-bioc.R | 2 - tests/testthat/test-install-git.R | 15 ++++++++ tests/testthat/test-system_requirements.R | 52 ++++++++++++++++++++++++++++++ 19 files changed, 161 insertions(+), 61 deletions(-)
Title: Find Tools Needed to Build R Packages
Description: Provides functions used to build R packages. Locates compilers
needed to build R packages on various platforms and ensures the PATH is
configured appropriately so R can use them.
Author: Hadley Wickham [aut],
Jim Hester [aut],
Gábor Csárdi [aut, cre],
RStudio [cph]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between pkgbuild versions 1.2.0 dated 2020-12-15 and 1.2.1 dated 2021-11-30
DESCRIPTION | 19 ++++----- MD5 | 18 ++++---- NAMESPACE | 2 NEWS.md | 10 ++++ R/build.R | 21 +++++----- R/latex.R | 3 + R/with-debug.R | 14 ++++++ README.md | 2 man/without_compiler.Rd | 6 ++ tests/testthat/test-build.r | 92 ++++++++++++++++++++++++++++++++++++++++++++ 10 files changed, 159 insertions(+), 28 deletions(-)
Title: Cross-Platform File System Operations Based on 'libuv'
Description: A cross-platform interface to file system operations, built on
top of the 'libuv' C library.
Author: Jim Hester [aut],
Hadley Wickham [aut],
Gábor Csárdi [aut, cre],
libuv project contributors [cph] (libuv library),
Joyent, Inc. and other Node contributors [cph] (libuv library),
RStudio [cph, fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between fs versions 1.5.0 dated 2020-07-31 and 1.5.1 dated 2021-11-30
fs-1.5.0/fs/src/libuv-1.38.1/conf3bK84S |only fs-1.5.0/fs/src/libuv-1.38.1/patch |only fs-1.5.1/fs/DESCRIPTION | 21 + fs-1.5.1/fs/LICENSE |only fs-1.5.1/fs/MD5 | 46 ++-- fs-1.5.1/fs/NEWS.md | 17 + fs-1.5.1/fs/R/access.R | 3 fs-1.5.1/fs/R/fs-package.R | 4 fs-1.5.1/fs/R/fs_path.R | 4 fs-1.5.1/fs/R/list.R | 3 fs-1.5.1/fs/R/path.R | 2 fs-1.5.1/fs/R/utils.R | 2 fs-1.5.1/fs/README.md | 118 +++++------ fs-1.5.1/fs/build/vignette.rds |binary fs-1.5.1/fs/inst/doc/function-comparisons.Rmd | 1 fs-1.5.1/fs/inst/doc/function-comparisons.html | 267 +++---------------------- fs-1.5.1/fs/man/dir_ls.Rd | 3 fs-1.5.1/fs/man/fs-package.Rd | 9 fs-1.5.1/fs/src/Makevars | 2 fs-1.5.1/fs/src/bsd/unistd.h | 1 fs-1.5.1/fs/src/dir.cc | 14 - fs-1.5.1/fs/src/file.cc | 18 + fs-1.5.1/fs/src/init.cc | 2 fs-1.5.1/fs/tests/testthat/test-path.R | 8 fs-1.5.1/fs/vignettes/function-comparisons.Rmd | 1 25 files changed, 201 insertions(+), 345 deletions(-)
Title: Basic R Input Output
Description: Functions to handle basic input output, these functions
always read and write UTF-8 (8-bit Unicode Transformation Format)
files and provide more explicit control over line endings.
Author: Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>),
Gábor Csárdi [aut, cre],
RStudio [cph, fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between brio versions 1.1.2 dated 2021-04-23 and 1.1.3 dated 2021-11-30
DESCRIPTION | 39 +++++++++++++++++------------------ MD5 | 16 ++++++++------ NAMESPACE | 1 NEWS.md | 8 +++++++ R/write_file_raw.R |only README.md | 18 ++++++++-------- man/write_file_raw.Rd |only src/init.c | 2 + src/read_lines.c | 5 +++- src/write_file_raw.c |only tests/testthat/test-write_file_raw.R |only 11 files changed, 53 insertions(+), 36 deletions(-)
Title: Computations Around Bayesian Predictive Power
Description: Implements functions to update Bayesian Predictive Power Computations after not stopping a clinical trial at an interim analysis. Such an interim analysis can either be blinded or unblinded. Code is provided for Normally distributed endpoints with known variance, with a prominent example being the hazard ratio.
Author: Kaspar Rufibach, Paul Jordan, Markus Abt
Maintainer: Kaspar Rufibach <kaspar.rufibach@roche.com>
Diff between bpp versions 1.0.2 dated 2021-05-20 and 1.0.3 dated 2021-11-30
DESCRIPTION | 8 +- MD5 | 86 +++++++++++++++++------------- NAMESPACE | 6 ++ NEWS | 7 ++ R/FlatNormalPosterior.r | 6 +- R/NormalNormalPosterior.r | 5 + R/basicPlot.r | 14 ++-- R/bpp.r | 11 ++- R/bpp_1interim.r | 68 ++++++++++++------------ R/bpp_1interim_binary.r |only R/bpp_1interim_continuous.r |only R/bpp_1interim_t2e.r |only R/bpp_2interim.r | 14 ++-- R/bpp_binary.r |only R/bpp_continuous.r |only R/bpp_t2e.r |only R/estimate_posterior.r | 16 ++--- R/estimate_posterior_nominator.r | 10 +-- R/estimate_toIntegrate.r | 14 ++-- R/interval_posterior_nominator.r | 6 +- R/interval_posterior_nominator2.r | 6 +- R/interval_toIntegrate.r | 16 +++-- R/interval_toIntegrate2.r | 17 +++--- R/pUniformNormalTails.r | 5 + R/post_power.r | 8 +- build/vignette.rds |binary inst/doc/bpp.R | 81 ++++++++++++++-------------- inst/doc/bpp.Rmd | 81 ++++++++++++++-------------- inst/doc/bpp.html | 99 +++++++++++++++++------------------ man/FlatNormalPosterior.Rd | 8 +- man/NormalNormalPosterior.Rd | 5 + man/bpp-package.Rd | 4 - man/bpp.Rd | 4 - man/bpp_1interim.Rd | 78 +++++++++++++-------------- man/bpp_1interim_binary.Rd |only man/bpp_1interim_continuous.Rd |only man/bpp_1interim_t2e.Rd |only man/bpp_2interim.Rd | 12 ++-- man/bpp_binary.Rd |only man/bpp_continuous.Rd |only man/bpp_t2e.Rd |only man/estimate_posterior.Rd | 6 +- man/estimate_posterior_nominator.Rd | 8 +- man/estimate_toIntegrate.Rd | 8 +- man/interval_posterior_nominator.Rd | 4 - man/interval_posterior_nominator2.Rd | 4 - man/interval_toIntegrate.Rd | 8 +- man/interval_toIntegrate2.Rd | 6 +- man/post_power.Rd | 6 +- vignettes/bpp.Rmd | 81 ++++++++++++++-------------- 50 files changed, 433 insertions(+), 393 deletions(-)
Title: Check if the Title of a Package is Available, Appropriate and
Interesting
Description: Check if a given package name is available to use. It checks the
name's validity. Checks if it is used on 'GitHub', 'CRAN' and 'Bioconductor'. Checks
for unintended meanings by querying Urban Dictionary, 'Wiktionary' and Wikipedia.
Author: Carl Ganz [aut],
Gábor Csárdi [aut, cre],
Jim Hester [aut],
Molly Lewis [aut],
Rachael Tatman [aut]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between available versions 1.0.4 dated 2019-07-19 and 1.0.5 dated 2021-11-30
available-1.0.4/available/man/get_wikipidia.Rd |only available-1.0.5/available/DESCRIPTION | 25 +++--- available-1.0.5/available/MD5 | 33 ++++----- available-1.0.5/available/NAMESPACE | 2 available-1.0.5/available/NEWS.md | 10 ++ available-1.0.5/available/R/available.R | 44 +++++++++--- available-1.0.5/available/R/bioc.R | 4 - available-1.0.5/available/R/cran.R | 8 ++ available-1.0.5/available/R/get_urban_data.R | 10 -- available-1.0.5/available/R/valid_name.R | 2 available-1.0.5/available/R/wiki.R | 4 - available-1.0.5/available/README.md | 35 +++++---- available-1.0.5/available/man/available.Rd | 18 +++- available-1.0.5/available/man/available_on_cran.Rd | 10 ++ available-1.0.5/available/man/create.Rd | 2 available-1.0.5/available/man/get_urban_data.Rd | 3 available-1.0.5/available/man/get_wikipedia.Rd |only available-1.0.5/available/man/suggest.Rd | 4 - available-1.0.5/available/tests/testthat/test-check_urban.R |only 19 files changed, 133 insertions(+), 81 deletions(-)
Title: Multi-Format Archive and Compression Support
Description: Bindings to 'libarchive' <http://www.libarchive.org> the
Multi-format archive and compression library. Offers R connections and
direct extraction for many archive formats including 'tar', 'ZIP',
'7-zip', 'RAR', 'CAB' and compression formats including 'gzip',
'bzip2', 'compress', 'lzma' and 'xz'.
Author: Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>),
Gábor Csárdi [aut, cre],
Ondrej Holy [cph] (archive_write_add_filter implementation),
RStudio [cph, fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between archive versions 1.1.2 dated 2021-10-25 and 1.1.3 dated 2021-11-30
DESCRIPTION | 53 ++++++++++++++++++++------------------------ MD5 | 16 ++++++------- NAMESPACE | 1 NEWS.md | 6 ++++ R/archive.R | 1 R/zzz.R | 1 README.md | 8 +++--- build/archive.pdf |binary src/archive_write_files.cpp | 2 + 9 files changed, 47 insertions(+), 41 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general
engine for big data processing, see <http://spark.apache.org>. This
package supports connecting to local and remote Apache Spark clusters,
provides a 'dplyr' compatible back-end, and provides an interface to
Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
Hossein Falaki [aut],
Lu Wang [aut],
Andy Zhang [aut],
Yitao Li [aut, cre] (<https://orcid.org/0000-0002-1261-905X>),
Jozef Hajnala [ctb],
Maciej Szymkiewicz [ctb] (<https://orcid.org/0000-0003-1469-9396>),
Wil Davis [ctb],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Yitao Li <yitao@rstudio.com>
Diff between sparklyr versions 1.7.2 dated 2021-09-16 and 1.7.3 dated 2021-11-30
DESCRIPTION | 6 ++-- MD5 | 43 ++++++++++++++++----------------- NAMESPACE | 1 NEWS.md | 30 +++++++++++++++++++++++ R/connection_spark.R | 15 +++++++++++ R/dplyr_spark_connection.R | 28 ++++++++++++++++++++- R/install_spark.R | 45 ++++++++++++++++++++++++---------- R/sdf_wrapper.R | 4 ++- R/shell_connection.R | 2 - R/tidyr_separate.R | 2 - README.md | 2 - build/partial.rdb |binary inst/extdata/versions.json | 48 +++++++++++++++++++++++++++++++++++++ inst/java/sparklyr-1.5-2.10.jar |binary inst/java/sparklyr-1.6-2.10.jar |binary inst/java/sparklyr-2.0-2.11.jar |binary inst/java/sparklyr-2.3-2.11.jar |binary inst/java/sparklyr-2.4-2.11.jar |binary inst/java/sparklyr-2.4-2.12.jar |binary inst/java/sparklyr-master-2.12.jar |binary java/spark-1.5.2/collectors.scala | 16 ++++++------ java/spark-1.5.2/utils.scala | 14 +++++----- man/sparklyr_get_backend_port.Rd |only 23 files changed, 199 insertions(+), 57 deletions(-)
Title: Spatial Data Processing for Decision Making
Description: Methods for processing spatial data for decision-making.
This package is an R implementation of methods provided by the open source software GeoFIS <https://www.geofis.org> (Leroux et al. 2018) <doi:10.3390/agriculture8060073>.
The main functionalities are the management zone delineation (Pedroso et al. 2010) <doi:10.1016/j.compag.2009.10.007> and data aggregation (Mora-Herrera et al. 2020) <doi:10.1016/j.compag.2020.105624>.
Author: Serge Guillaume [aut],
Jean-Luc Lablée [aut, cre],
INRAE [cph] (National Research Institute for Agriculture, Food and
Environment, France)
Maintainer: Jean-Luc Lablée <jean-luc.lablee@inrae.fr>
Diff between GeoFIS versions 1.0.1 dated 2021-07-22 and 1.0.2 dated 2021-11-30
GeoFIS-1.0.1/GeoFIS/inst/doc/zoning.R |only GeoFIS-1.0.1/GeoFIS/inst/doc/zoning.Rmd |only GeoFIS-1.0.1/GeoFIS/vignettes/zoning.Rmd |only GeoFIS-1.0.2/GeoFIS/DESCRIPTION | 10 +++++----- GeoFIS-1.0.2/GeoFIS/MD5 | 17 ++++++++--------- GeoFIS-1.0.2/GeoFIS/NEWS.md | 4 ++++ GeoFIS-1.0.2/GeoFIS/build/partial.rdb |binary GeoFIS-1.0.2/GeoFIS/build/vignette.rds |binary GeoFIS-1.0.2/GeoFIS/inst/doc/data-fusion.html | 2 +- GeoFIS-1.0.2/GeoFIS/inst/doc/zoning.html | 8 ++++---- GeoFIS-1.0.2/GeoFIS/inst/doc/zoning.html.asis |only GeoFIS-1.0.2/GeoFIS/vignettes/zoning.html.asis |only 12 files changed, 22 insertions(+), 19 deletions(-)
Title: Two Arm Bayesian Clinical Trial Design with and Without
Historical Control Data
Description: A set of functions to help clinical trial researchers calculate power and sample size for two-arm Bayesian randomized clinical trials that do or do not incorporate historical control data. At some point during the design process, a clinical trial researcher who is designing a basic two-arm Bayesian randomized clinical trial needs to make decisions about power and sample size within the context of hypothesized treatment effects. Through simulation, the simple_sim() function will estimate power and other user specified clinical trial characteristics at user specified sample sizes given user defined scenarios about treatment effect,control group characteristics, and outcome. If the clinical trial researcher has access to historical control data, then the researcher can design a two-arm Bayesian randomized clinical trial that incorporates the historical data. In such a case, the researcher needs to work through the potential consequences of historical and randomized control differences on trial characteristics, in addition to working through issues regarding power in the context of sample size, treatment effect size, and outcome. If a researcher designs a clinical trial that will incorporate historical control data, the researcher needs the randomized controls to be from the same population as the historical controls. What if this is not the case when the designed trial is implemented? During the design phase, the researcher needs to investigate the negative effects of possible historic/randomized control differences on power, type one error, and other trial characteristics. Using this information, the researcher should design the trial to mitigate these negative effects. Through simulation, the historic_sim() function will estimate power and other user specified clinical trial characteristics at user specified sample sizes given user defined scenarios about historical and randomized control differences as well as treatment effects and outcomes. The results from historic_sim() and simple_sim() can be printed with print_table() and graphed with plot_table() methods. Outcomes considered are Gaussian, Poisson, Bernoulli, Lognormal, Weibull, and Piecewise Exponential. The methods are described in Eggleston et al. (2021) <doi:10.18637/jss.v100.i21>.
Author: Barry Eggleston [cre, aut],
Doug Wilson [aut],
Becky McNeil [aut],
Joseph Ibrahim [aut],
Diane Catellier [fnd, rth, aut]
Maintainer: Barry Eggleston <beggleston@rti.org>
Diff between BayesCTDesign versions 0.6.0 dated 2019-08-02 and 0.6.1 dated 2021-11-30
BayesCTDesign-0.6.0/BayesCTDesign/man/plot_table.Rd |only BayesCTDesign-0.6.0/BayesCTDesign/man/plot_table.bayes_ctd_array.Rd |only BayesCTDesign-0.6.0/BayesCTDesign/man/print_table.Rd |only BayesCTDesign-0.6.0/BayesCTDesign/man/print_table.bayes_ctd_array.Rd |only BayesCTDesign-0.6.1/BayesCTDesign/DESCRIPTION | 17 BayesCTDesign-0.6.1/BayesCTDesign/MD5 | 59 BayesCTDesign-0.6.1/BayesCTDesign/NAMESPACE | 28 BayesCTDesign-0.6.1/BayesCTDesign/NEWS.md | 26 BayesCTDesign-0.6.1/BayesCTDesign/R/BayesCTDesigncode.R | 5620 ++-------- BayesCTDesign-0.6.1/BayesCTDesign/R/BernoulliCode.R | 2344 ++-- BayesCTDesign-0.6.1/BayesCTDesign/R/BernoulliErrorChecks.R | 250 BayesCTDesign-0.6.1/BayesCTDesign/R/GaussianCode.R | 2376 ++-- BayesCTDesign-0.6.1/BayesCTDesign/R/GaussianErrorChecks.R | 234 BayesCTDesign-0.6.1/BayesCTDesign/R/GlobalErrorChecks.R | 381 BayesCTDesign-0.6.1/BayesCTDesign/R/LogNormalCode.R | 2626 ++-- BayesCTDesign-0.6.1/BayesCTDesign/R/LogNormalErrorChecks.R | 306 BayesCTDesign-0.6.1/BayesCTDesign/R/PWECode.R | 9 BayesCTDesign-0.6.1/BayesCTDesign/R/PWEErrorChecks.R | 386 BayesCTDesign-0.6.1/BayesCTDesign/R/PoissonCode.R | 2330 ++-- BayesCTDesign-0.6.1/BayesCTDesign/R/PoissonErrorChecks.R | 248 BayesCTDesign-0.6.1/BayesCTDesign/R/WeibullCode.R | 2712 ++-- BayesCTDesign-0.6.1/BayesCTDesign/R/WeibullErrorChecks.R | 308 BayesCTDesign-0.6.1/BayesCTDesign/inst |only BayesCTDesign-0.6.1/BayesCTDesign/man/genbernoullidata.Rd | 60 BayesCTDesign-0.6.1/BayesCTDesign/man/gengaussiandata.Rd | 66 BayesCTDesign-0.6.1/BayesCTDesign/man/genlognormaldata.Rd | 72 BayesCTDesign-0.6.1/BayesCTDesign/man/genpoissondata.Rd | 60 BayesCTDesign-0.6.1/BayesCTDesign/man/genpwedata.Rd | 80 BayesCTDesign-0.6.1/BayesCTDesign/man/genweibulldata.Rd | 75 BayesCTDesign-0.6.1/BayesCTDesign/man/historic_sim.Rd | 602 - BayesCTDesign-0.6.1/BayesCTDesign/man/plot.bayes_ctd_array.Rd | 650 - BayesCTDesign-0.6.1/BayesCTDesign/man/print.bayes_ctd_array.Rd | 513 BayesCTDesign-0.6.1/BayesCTDesign/man/simple_sim.Rd | 423 33 files changed, 9607 insertions(+), 13254 deletions(-)
Title: Meta-Analysis for Diagnostic Test Studies
Description: Bayesian inference analysis for bivariate meta-analysis of diagnostic test studies using integrated nested Laplace approximation with INLA. A purpose built graphic user interface is available. The installation of R package INLA is compulsory for successful usage. The INLA package can be obtained from <https://www.r-inla.org>. We recommend the testing version, which can be downloaded by running: install.packages("INLA", repos=c(getOption("repos"), INLA="https://inla.r-inla-download.org/R/testing"), dep=TRUE).
Author: Jingyi Guo <jingyi.guo@ntnu.no> and Andrea Riebler <andrea.riebler@ntnu.no>
Maintainer: Jingyi Guo <jingyi.guo@ntnu.no>
Diff between meta4diag versions 2.0.8 dated 2018-07-23 and 2.1.1 dated 2021-11-30
DESCRIPTION | 18 +++++++++--------- MD5 | 18 +++++++++--------- R/makeObject.R | 17 ++++++++++++----- R/runModel.R | 4 ++-- R/uuu.R | 2 ++ data/Catheter.rda |binary data/Scheidler.rda |binary data/Telomerase.rda |binary data/table_cor.rda |binary data/table_var.rda |binary 10 files changed, 34 insertions(+), 25 deletions(-)
Title: DDI with R
Description: Useful functions for various DDI (Data Documentation Initiative) related inputs and outputs.
Converts data files to and from SPSS, Stata, SAS, R and Excel, including user declared missing values.
Author: Adrian Dusa [aut, cre, cph] (<https://orcid.org/0000-0002-3525-9253>)
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between DDIwR versions 0.8 dated 2021-09-02 and 0.9 dated 2021-11-30
DDIwR-0.8/DDIwR/R/recodeMissing.R |only DDIwR-0.8/DDIwR/inst/schemas |only DDIwR-0.8/DDIwR/man/collectMetadata.Rd |only DDIwR-0.8/DDIwR/man/recodeMissing.Rd |only DDIwR-0.9/DDIwR/DESCRIPTION | 10 - DDIwR-0.9/DDIwR/MD5 | 40 ++--- DDIwR-0.9/DDIwR/NAMESPACE | 2 DDIwR-0.9/DDIwR/R/checkType.R | 5 DDIwR-0.9/DDIwR/R/convert.R | 106 ++++++++++++--- DDIwR-0.9/DDIwR/R/exportDDI.R | 7 - DDIwR-0.9/DDIwR/R/getFiles.R | 6 DDIwR-0.9/DDIwR/R/getMetadata.R | 53 ++++++- DDIwR-0.9/DDIwR/R/make_labelled.R | 2 DDIwR-0.9/DDIwR/R/recodeValues.R |only DDIwR-0.9/DDIwR/R/setupfile.R | 222 +++++++++++++++++++++------------ DDIwR-0.9/DDIwR/R/treatPath.R | 11 + DDIwR-0.9/DDIwR/inst/ChangeLog | 13 + DDIwR-0.9/DDIwR/man/DDIwR-internal.Rd | 1 DDIwR-0.9/DDIwR/man/DDIwR.package.Rd | 4 DDIwR-0.9/DDIwR/man/convert.Rd | 21 ++- DDIwR-0.9/DDIwR/man/exportDDI.Rd | 28 ++-- DDIwR-0.9/DDIwR/man/getMetadata.Rd | 40 ++++- DDIwR-0.9/DDIwR/man/recodeValues.Rd |only DDIwR-0.9/DDIwR/man/setupfile.Rd | 20 +- 24 files changed, 416 insertions(+), 175 deletions(-)
Title: Predicting Ethnic Group from Names
Description: Implementation of the ethnicity prediction method, described
in "Rethnicity: Predicting Ethnicity from Names" by Fangzhou Xie (2021) <arXiv:2109.09228>.
Author: Fangzhou Xie [aut, cre] (<https://orcid.org/0000-0001-7702-093X>)
Maintainer: Fangzhou Xie <fangzhou.xie@rutgers.edu>
Diff between rethnicity versions 0.1.2 dated 2021-10-07 and 0.2.2 dated 2021-11-30
rethnicity-0.1.2/rethnicity/LICENSE |only rethnicity-0.1.2/rethnicity/src/string_to_id.cpp |only rethnicity-0.2.2/rethnicity/DESCRIPTION | 12 rethnicity-0.2.2/rethnicity/MD5 | 38 +- rethnicity-0.2.2/rethnicity/NAMESPACE | 2 rethnicity-0.2.2/rethnicity/NEWS.md | 8 rethnicity-0.2.2/rethnicity/R/RcppExports.R | 4 rethnicity-0.2.2/rethnicity/R/predict_ethnicity.R | 158 ++++++++--- rethnicity-0.2.2/rethnicity/R/zzz.R | 22 + rethnicity-0.2.2/rethnicity/README.md | 35 +- rethnicity-0.2.2/rethnicity/build/vignette.rds |binary rethnicity-0.2.2/rethnicity/inst/doc/advanced_usage.R |only rethnicity-0.2.2/rethnicity/inst/doc/advanced_usage.Rmd |only rethnicity-0.2.2/rethnicity/inst/doc/advanced_usage.html |only rethnicity-0.2.2/rethnicity/inst/doc/introduction.Rmd | 2 rethnicity-0.2.2/rethnicity/inst/doc/introduction.html | 23 - rethnicity-0.2.2/rethnicity/man/predict_ethnicity.Rd | 4 rethnicity-0.2.2/rethnicity/man/predict_fullname.Rd |only rethnicity-0.2.2/rethnicity/man/predict_lastname.Rd |only rethnicity-0.2.2/rethnicity/src/predict_ethnicity.cpp | 4 rethnicity-0.2.2/rethnicity/src/string_to_id.h | 46 ++- rethnicity-0.2.2/rethnicity/tests/testthat/test_prediction.R | 17 + rethnicity-0.2.2/rethnicity/vignettes/advanced_usage.Rmd |only rethnicity-0.2.2/rethnicity/vignettes/introduction.Rmd | 2 24 files changed, 282 insertions(+), 95 deletions(-)
Title: Connect to ODBC Compatible Databases (using the DBI Interface)
Description: A DBI-compatible interface to ODBC databases.
Author: Jim Hester [aut],
Hadley Wickham [aut, cre],
Oliver Gjoneski [ctb] (detule),
lexicalunit [cph] (nanodbc library),
Google Inc. [cph] (cctz library),
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between odbc versions 1.3.2 dated 2021-04-03 and 1.3.3 dated 2021-11-30
DESCRIPTION | 19 +++++++++---------- MD5 | 14 +++++++------- NEWS.md | 6 +++++- R/Driver.R | 2 +- README.md | 5 +++-- build/odbc.pdf |binary man/dbConnect-OdbcDriver-method.Rd | 2 +- man/odbc-package.Rd | 7 +++---- 8 files changed, 29 insertions(+), 26 deletions(-)
Title: Interpreted String Literals
Description: An implementation of interpreted string literals, inspired by
Python's Literal String Interpolation
<https://www.python.org/dev/peps/pep-0498/> and Docstrings
<https://www.python.org/dev/peps/pep-0257/> and Julia's Triple-Quoted
String Literals
<https://docs.julialang.org/en/v1.3/manual/strings/#Triple-Quoted-String-Literals-1>.
Author: Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>),
Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between glue versions 1.5.0 dated 2021-11-06 and 1.5.1 dated 2021-11-30
DESCRIPTION | 17 +++++--- MD5 | 48 +++++++++++++----------- NEWS.md | 12 ++++++ R/color.R | 17 +++++++- R/knitr.R | 9 ---- R/safe.R | 7 +-- R/sql.R | 3 + R/zzz.R | 8 ++++ README.md | 11 ++--- build/vignette.rds |binary inst/doc/engines.R |only inst/doc/engines.Rmd |only inst/doc/engines.html |only inst/doc/speed.Rmd | 2 - inst/doc/transformers.R | 5 ++ inst/doc/transformers.Rmd | 6 +++ man/glue_col.Rd | 2 + man/glue_safe.Rd | 6 +-- src/glue.c | 5 ++ src/trim.c | 1 tests/testthat/test-color.R | 88 ++++++++++++++++++++++++++------------------ tests/testthat/test-glue.R | 1 tests/testthat/test-sql.R | 1 tests/testthat/test-trim.R | 15 +++++++ vignettes/engines.Rmd |only vignettes/speed.Rmd | 2 - vignettes/transformers.Rmd | 6 +++ 27 files changed, 179 insertions(+), 93 deletions(-)
Title: A C++11 Interface for R's C Interface
Description: Provides a header only, C++11 interface to R's C
interface. Compared to other approaches 'cpp11' strives to be safe
against long jumps from the C API as well as C++ exceptions, conform
to normal R function semantics and supports interaction with 'ALTREP'
vectors.
Author: Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>),
Romain François [aut, cre],
Benjamin Kietzman [ctb],
RStudio [cph, fnd]
Maintainer: Romain François <romain@rstudio.com>
Diff between cpp11 versions 0.4.1 dated 2021-11-03 and 0.4.2 dated 2021-11-30
DESCRIPTION | 20 ++++++++++---------- MD5 | 10 +++++----- NEWS.md | 4 ++++ inst/doc/FAQ.html | 4 ++-- inst/doc/cpp11.html | 22 +++++++++++----------- man/cpp11-package.Rd | 14 +++++++------- 6 files changed, 39 insertions(+), 35 deletions(-)
Title: Bayesian Models for Data from Unmarked Animals using 'Stan'
Description: Fit Bayesian hierarchical models of animal abundance and occurrence
via the 'rstan' package, the R interface to the 'Stan' C++ library.
Supported models include single-season occupancy, dynamic occupancy, and
N-mixture abundance models. Covariates on model parameters are specified
using a formula-based interface similar to package 'unmarked', while also
allowing for estimation of random slope and intercept terms. References:
Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>;
Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.
Author: Ken Kellner [cre, aut]
Maintainer: Ken Kellner <contact@kenkellner.com>
Diff between ubms versions 1.0.2 dated 2021-02-01 and 1.1.0 dated 2021-11-30
ubms-1.0.2/ubms/R/distamp.R |only ubms-1.0.2/ubms/R/plot_marginal.R |only ubms-1.0.2/ubms/inst/stan/include/fixed_priors_single_season.stan |only ubms-1.0.2/ubms/inst/stan/include/rand_priors_single_season.stan |only ubms-1.0.2/ubms/man/plot_marginal-ubmsFit-method.Rd |only ubms-1.0.2/ubms/tests/testthat/test_plot_marginal.R |only ubms-1.1.0/ubms/DESCRIPTION | 27 - ubms-1.1.0/ubms/MD5 | 161 ++++--- ubms-1.1.0/ubms/NAMESPACE | 24 + ubms-1.1.0/ubms/R/colext.R | 49 ++ ubms-1.1.0/ubms/R/distsamp.R |only ubms-1.1.0/ubms/R/fit.R | 69 +-- ubms-1.1.0/ubms/R/fitted.R | 5 ubms-1.1.0/ubms/R/gof.R | 27 - ubms-1.1.0/ubms/R/inputs.R | 68 ++- ubms-1.1.0/ubms/R/multinomPois.R | 34 + ubms-1.1.0/ubms/R/occu.R | 50 ++ ubms-1.1.0/ubms/R/occuRN.R | 35 + ubms-1.1.0/ubms/R/occuTTD.R | 47 +- ubms-1.1.0/ubms/R/pcount.R | 36 + ubms-1.1.0/ubms/R/plot_effects.R |only ubms-1.1.0/ubms/R/plot_posteriors.R |only ubms-1.1.0/ubms/R/posterior_linpred.R | 27 + ubms-1.1.0/ubms/R/priors.R |only ubms-1.1.0/ubms/R/spatial.R |only ubms-1.1.0/ubms/R/stanmodels.R | 3 ubms-1.1.0/ubms/R/submodel.R | 78 ++- ubms-1.1.0/ubms/R/test-helpers.R |only ubms-1.1.0/ubms/R/ubmsFit-methods.R | 71 +++ ubms-1.1.0/ubms/R/utils.R | 9 ubms-1.1.0/ubms/build/vignette.rds |binary ubms-1.1.0/ubms/inst/CITATION |only ubms-1.1.0/ubms/inst/doc/JAGS-comparison.Rmd | 5 ubms-1.1.0/ubms/inst/doc/JAGS-comparison.html | 5 ubms-1.1.0/ubms/inst/doc/random-effects.Rmd | 34 - ubms-1.1.0/ubms/inst/doc/random-effects.html | 34 - ubms-1.1.0/ubms/inst/doc/spatial-models.Rmd |only ubms-1.1.0/ubms/inst/doc/spatial-models.html |only ubms-1.1.0/ubms/inst/doc/ubms.R | 9 ubms-1.1.0/ubms/inst/doc/ubms.Rmd | 15 ubms-1.1.0/ubms/inst/doc/ubms.html | 208 ++++------ ubms-1.1.0/ubms/inst/stan/colext.stan | 49 +- ubms-1.1.0/ubms/inst/stan/include/call_loglik_functions.stan |only ubms-1.1.0/ubms/inst/stan/include/data.stan | 13 ubms-1.1.0/ubms/inst/stan/include/functions_priors.stan |only ubms-1.1.0/ubms/inst/stan/include/params_single_season.stan | 4 ubms-1.1.0/ubms/inst/stan/include/priors_single_season.stan |only ubms-1.1.0/ubms/inst/stan/single_season.stan | 43 +- ubms-1.1.0/ubms/inst/stan/spatial.stan |only ubms-1.1.0/ubms/man/RSR.Rd |only ubms-1.1.0/ubms/man/get_elapsed_time-ubmsFit-method.Rd |only ubms-1.1.0/ubms/man/get_stancode-ubmsFit-method.Rd |only ubms-1.1.0/ubms/man/plot_effects-ubmsFit-method.Rd |only ubms-1.1.0/ubms/man/plot_posteriors-ubmsFit-method.Rd |only ubms-1.1.0/ubms/man/plot_spatial.Rd |only ubms-1.1.0/ubms/man/priors.Rd |only ubms-1.1.0/ubms/man/stan_colext.Rd | 35 + ubms-1.1.0/ubms/man/stan_distsamp.Rd | 25 + ubms-1.1.0/ubms/man/stan_multinomPois.Rd | 25 + ubms-1.1.0/ubms/man/stan_occu.Rd | 25 + ubms-1.1.0/ubms/man/stan_occuRN.Rd | 26 + ubms-1.1.0/ubms/man/stan_occuTTD.Rd | 23 + ubms-1.1.0/ubms/man/stan_pcount.Rd | 27 + ubms-1.1.0/ubms/src/Makevars | 8 ubms-1.1.0/ubms/src/Makevars.win | 7 ubms-1.1.0/ubms/src/simz.cpp | 12 ubms-1.1.0/ubms/tests/testthat/test_colext.R | 35 - ubms-1.1.0/ubms/tests/testthat/test_distsamp.R | 43 +- ubms-1.1.0/ubms/tests/testthat/test_fit.R | 105 ++--- ubms-1.1.0/ubms/tests/testthat/test_fitlist.R | 4 ubms-1.1.0/ubms/tests/testthat/test_inputs.R | 76 ++- ubms-1.1.0/ubms/tests/testthat/test_linpred.R | 4 ubms-1.1.0/ubms/tests/testthat/test_missing.R | 26 - ubms-1.1.0/ubms/tests/testthat/test_multinomPois.R | 47 +- ubms-1.1.0/ubms/tests/testthat/test_occu.R | 32 - ubms-1.1.0/ubms/tests/testthat/test_occuRN.R | 42 +- ubms-1.1.0/ubms/tests/testthat/test_occuTTD.R | 38 + ubms-1.1.0/ubms/tests/testthat/test_pcount.R | 63 ++- ubms-1.1.0/ubms/tests/testthat/test_plot_effects.R |only ubms-1.1.0/ubms/tests/testthat/test_plot_posteriors.R |only ubms-1.1.0/ubms/tests/testthat/test_priors.R |only ubms-1.1.0/ubms/tests/testthat/test_ranef.R | 4 ubms-1.1.0/ubms/tests/testthat/test_residuals.R | 4 ubms-1.1.0/ubms/tests/testthat/test_spatial.R |only ubms-1.1.0/ubms/tests/testthat/test_submodel.R | 168 ++++++-- ubms-1.1.0/ubms/tests/testthat/test_ubmsFit_methods.R | 51 ++ ubms-1.1.0/ubms/tests/testthat/test_utils.R | 13 ubms-1.1.0/ubms/vignettes/JAGS-comparison.Rmd | 5 ubms-1.1.0/ubms/vignettes/JAGS-comparison.Rmd.orig | 8 ubms-1.1.0/ubms/vignettes/random-effects.Rmd | 34 - ubms-1.1.0/ubms/vignettes/references.bib | 56 ++ ubms-1.1.0/ubms/vignettes/spatial-models.Rmd |only ubms-1.1.0/ubms/vignettes/spatial-models.Rmd.orig |only ubms-1.1.0/ubms/vignettes/spatial_cov-1.png |only ubms-1.1.0/ubms/vignettes/spatial_eta-1.png |only ubms-1.1.0/ubms/vignettes/spatial_marginal-1.png |only ubms-1.1.0/ubms/vignettes/spatial_psi-1.png |only ubms-1.1.0/ubms/vignettes/spatial_stocc-1.png |only ubms-1.1.0/ubms/vignettes/spatial_threshold1-1.png |only ubms-1.1.0/ubms/vignettes/spatial_threshold10-1.png |only ubms-1.1.0/ubms/vignettes/ubms.Rmd | 15 101 files changed, 1605 insertions(+), 720 deletions(-)
Title: Access the 'Gmail' 'RESTful' API
Description: An interface to the 'Gmail' 'RESTful' API. Allows access to
your 'Gmail' messages, threads, drafts and labels.
Author: Jim Hester [aut],
Jennifer Bryan [aut, cre],
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between gmailr versions 1.0.0 dated 2019-08-23 and 1.0.1 dated 2021-11-30
DESCRIPTION | 27 - MD5 | 142 +++---- NAMESPACE | 284 +++++++-------- NEWS.md | 6 R/aaa.R | 8 R/draft.R | 10 R/gm-auth.R | 11 R/history.R | 2 R/label.R | 14 R/message.R | 22 - R/thread.R | 12 README.md | 16 build/gmailr.pdf |binary build/vignette.rds |binary inst/doc/gmailr.R | 18 inst/doc/gmailr.Rmd | 2 inst/doc/gmailr.html | 629 ++++++++++++--------------------- inst/doc/sending_messages.R | 166 ++++---- inst/doc/sending_messages.html | 732 +++++++++++++++------------------------ inst/secret/rpkgtester@gmail.com |binary man/accessors.Rd | 62 +-- man/as.character.mime.Rd | 36 - man/clear_token.Rd | 24 - man/gm_attachment.Rd | 88 ++-- man/gm_attachments.Rd | 40 +- man/gm_auth.Rd | 237 ++++++------ man/gm_auth_configure.Rd | 182 +++++---- man/gm_body.Rd | 44 +- man/gm_create_draft.Rd | 50 +- man/gm_create_label.Rd | 67 +-- man/gm_deauth.Rd | 55 +- man/gm_delete_draft.Rd | 60 +-- man/gm_delete_label.Rd | 52 +- man/gm_delete_message.Rd | 76 ++-- man/gm_delete_thread.Rd | 64 +-- man/gm_draft.Rd | 64 +-- man/gm_drafts.Rd | 68 +-- man/gm_has_token.Rd | 36 - man/gm_history.Rd | 67 +-- man/gm_id.Rd | 55 +- man/gm_import_message.Rd | 100 ++--- man/gm_insert_message.Rd | 100 ++--- man/gm_label.Rd | 52 +- man/gm_labels.Rd | 58 +-- man/gm_last_response.Rd | 22 - man/gm_message.Rd | 86 ++-- man/gm_messages.Rd | 103 ++--- man/gm_mime.Rd | 186 +++++---- man/gm_modify_message.Rd | 93 ++-- man/gm_modify_thread.Rd | 84 ++-- man/gm_profile.Rd | 70 +-- man/gm_save_attachment.Rd | 78 ++-- man/gm_save_attachments.Rd | 91 ++-- man/gm_send_draft.Rd | 64 +-- man/gm_send_message.Rd | 92 ++-- man/gm_thread.Rd | 64 +-- man/gm_threads.Rd | 92 ++-- man/gm_token.Rd | 54 +- man/gm_trash_message.Rd | 76 ++-- man/gm_trash_thread.Rd | 63 +-- man/gm_untrash_message.Rd | 76 ++-- man/gm_untrash_thread.Rd | 63 +-- man/gm_update_label.Rd | 76 ++-- man/gmail_auth.Rd | 66 +-- man/gmailr-deprecated.Rd | 280 +++++++------- man/gmailr.Rd | 19 - man/pipe.Rd | 44 +- man/quoted_printable_encode.Rd | 36 - man/use_secret_file.Rd | 32 - tests/testthat.R | 6 tests/testthat/helper.R | 2 vignettes/gmailr.Rmd | 2 72 files changed, 2839 insertions(+), 3019 deletions(-)
Title: Tools to Make Developing R Packages Easier
Description: Collection of package development tools.
Author: Hadley Wickham [aut],
Jim Hester [aut],
Winston Chang [aut],
Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between devtools versions 2.4.2 dated 2021-06-07 and 2.4.3 dated 2021-11-30
devtools-2.4.2/devtools/R/github.R |only devtools-2.4.2/devtools/man/github_pat.Rd |only devtools-2.4.3/devtools/DESCRIPTION | 23 +++++---- devtools-2.4.3/devtools/MD5 | 38 +++++++-------- devtools-2.4.3/devtools/NAMESPACE | 2 devtools-2.4.3/devtools/NEWS.md | 9 +++ devtools-2.4.3/devtools/R/build-readme.R | 14 +++-- devtools-2.4.3/devtools/R/check-mac.R |only devtools-2.4.3/devtools/R/release.R | 15 +++-- devtools-2.4.3/devtools/R/utils.R | 8 --- devtools-2.4.3/devtools/README.md | 6 +- devtools-2.4.3/devtools/build/vignette.rds |binary devtools-2.4.3/devtools/inst/doc/dependencies.Rmd | 6 +- devtools-2.4.3/devtools/inst/doc/dependencies.html | 10 +-- devtools-2.4.3/devtools/inst/rstudio/addins.dcf | 5 + devtools-2.4.3/devtools/man/check.Rd | 16 +++--- devtools-2.4.3/devtools/man/check_mac_release.Rd |only devtools-2.4.3/devtools/man/check_rhub.Rd | 1 devtools-2.4.3/devtools/man/check_win.Rd | 1 devtools-2.4.3/devtools/man/devtools.Rd | 3 - devtools-2.4.3/devtools/tests/testthat/test-run-source.R | 13 +++-- devtools-2.4.3/devtools/vignettes/dependencies.Rmd | 6 +- 22 files changed, 102 insertions(+), 74 deletions(-)
More information about d4storagehub4R at CRAN
Permanent link
Title: Composite Indicator Construction and Analysis
Description: A comprehensive high-level package for composite indicator construction and analysis. It is a "development environment"
for composite indicators and scoreboards, which includes utilities for construction (indicator selection, denomination, imputation,
data treatment, normalisation, weighting and aggregation) and analysis (multivariate analysis, correlation plotting, short cuts for
principal component analysis, global sensitivity analysis, and more). A composite indicator is completely encapsulated inside a single
hierarchical list called a "COIN". This allows a fast and efficient work flow, as well as making quick copies, testing methodological variations and making comparisons.
It also includes many plotting options, both statistical (scatter plots, distribution plots) as well as for presenting results (maps,
bar charts, radar charts, and more).
Finally, three Shiny apps are available which enable fast data exploration, results presentation, and checking the effects of
altering weights.
Full documentation is found in the online book at <https://bluefoxr.github.io/COINrDoc/>, as well as the vignette.
Author: William Becker [aut, cre, cph]
(<https://orcid.org/0000-0002-6467-4472>)
Maintainer: William Becker <william.becker@bluefoxdata.eu>
Diff between COINr versions 0.6.0 dated 2021-11-26 and 0.6.1 dated 2021-11-30
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 6 +++++- R/coin_PCA.R | 2 +- R/coin_assemble.R | 4 ++-- R/coin_multivariate.R | 12 ++++++------ R/coin_resultstable.R | 18 ++++++++++-------- R/getIn.R | 17 ++++++----------- build/partial.rdb |binary 9 files changed, 41 insertions(+), 40 deletions(-)
Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework
in R. CanvasXpress is a standalone JavaScript library for reproducible research
with complete tracking of data and end-user modifications stored in a single
PNG image that can be played back. See <https://www.canvasxpress.org> for more
information.
Author: Isaac Neuhaus [aut],
Connie Brett [aut, cre]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Diff between canvasXpress versions 1.37.0 dated 2021-11-26 and 1.37.0-1 dated 2021-11-30
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 2 ++ R/html_functionality.R | 2 ++ inst/doc/additional_examples.html | 4 ++-- inst/doc/getting_started.html | 4 ++-- man/cxHtmlPage.Rd | 2 ++ tests/testthat/test-other-cxHtmlPage.R | 4 ++++ 8 files changed, 24 insertions(+), 14 deletions(-)
Title: Generate Bootstrap Cards
Description: Allows the user to generate bootstrap cards within
R markdown documents. Intended for use in conjunction with
R markdown HTML outputs and other formats that support the
bootstrap 4 library.
Author: Danielle Navarro [aut, cre] (<https://orcid.org/0000-0001-7648-6578>)
Maintainer: Danielle Navarro <djnavarro@protonmail.com>
Diff between bs4cards versions 0.1.0 dated 2021-09-03 and 0.1.1 dated 2021-11-30
DESCRIPTION | 14 +++++++------- MD5 | 25 +++++++++++++------------ NEWS.md |only R/build-card-data.R | 4 ++++ R/build-card-row.R | 20 ++++++++++++-------- R/build-tag-list.R | 8 +++++--- R/card-pieces.R | 2 +- R/cards.R | 23 +++++++++++++++++++---- R/css-helpers.R | 4 ++++ R/parse-sizes.R | 5 ++++- R/validators.R | 1 - README.md | 5 +++-- man/cards.Rd | 8 ++++---- tests/testthat/test-cards.R | 26 ++++++++++++++++++++++++++ 14 files changed, 102 insertions(+), 43 deletions(-)
Title: Statistical Learning on Sparse Matrices
Description: Implements many algorithms for statistical learning on
sparse matrices - matrix factorizations, matrix completion,
elastic net regressions, factorization machines.
Also 'rsparse' enhances 'Matrix' package by providing methods for
multithreaded <sparse, dense> matrix products and native slicing of
the sparse matrices in Compressed Sparse Row (CSR) format.
List of the algorithms for regression problems:
1) Elastic Net regression via Follow The Proximally-Regularized Leader (FTRL)
Stochastic Gradient Descent (SGD), as per McMahan et al(, <doi:10.1145/2487575.2488200>)
2) Factorization Machines via SGD, as per Rendle (2010, <doi:10.1109/ICDM.2010.127>)
List of algorithms for matrix factorization and matrix completion:
1) Weighted Regularized Matrix Factorization (WRMF) via Alternating Least
Squares (ALS) - paper by Hu, Koren, Volinsky (2008, <doi:10.1109/ICDM.2008.22>)
2) Maximum-Margin Matrix Factorization via ALS, paper by Rennie, Srebro
(2005, <doi:10.1145/1102351.1102441>)
3) Fast Truncated Singular Value Decomposition (SVD), Soft-Thresholded SVD,
Soft-Impute matrix completion via ALS - paper by Hastie, Mazumder
et al. (2014, <arXiv:1410.2596>)
4) Linear-Flow matrix factorization, from 'Practical linear models for
large-scale one-class collaborative filtering' by Sedhain, Bui, Kawale et al
(2016, ISBN:978-1-57735-770-4)
5) GlobalVectors (GloVe) matrix factorization via SGD, paper by Pennington,
Socher, Manning (2014, <https://aclanthology.org/D14-1162/>)
Package is reasonably fast and memory efficient - it allows to work with large
datasets - millions of rows and millions of columns. This is particularly useful
for practitioners working on recommender systems.
Author: Dmitriy Selivanov [aut, cre, cph]
(<https://orcid.org/0000-0001-5413-1506>),
David Cortes [ctb],
Drew Schmidt [ctb] (configure script for BLAS, LAPACK detection),
Wei-Chen Chen [ctb] (configure script and work on linking to float
package)
Maintainer: Dmitriy Selivanov <ds@rexy.ai>
Diff between rsparse versions 0.4.0 dated 2020-04-01 and 0.5.0 dated 2021-11-30
rsparse-0.4.0/rsparse/R/methods.R |only rsparse-0.4.0/rsparse/man/matmult.Rd |only rsparse-0.4.0/rsparse/man/slice.Rd |only rsparse-0.4.0/rsparse/src/FactorizationMachine.cpp |only rsparse-0.4.0/rsparse/src/MappedSparseMatrices.h |only rsparse-0.4.0/rsparse/src/ProductSparseDense.cpp |only rsparse-0.4.0/rsparse/src/SolverAlsWrmf.cpp |only rsparse-0.4.0/rsparse/src/SolverRankMF.cpp |only rsparse-0.4.0/rsparse/src/TopProduct.cpp |only rsparse-0.4.0/rsparse/tests/testthat/test-csr-subset.R |only rsparse-0.4.0/rsparse/tests/testthat/test-matmul.R |only rsparse-0.5.0/rsparse/DESCRIPTION | 18 rsparse-0.5.0/rsparse/MD5 | 85 rsparse-0.5.0/rsparse/NAMESPACE | 4 rsparse-0.5.0/rsparse/NEWS.md | 4 rsparse-0.5.0/rsparse/R/MatrixFactorizationRecommender.R | 7 rsparse-0.5.0/rsparse/R/RcppExports.R | 68 rsparse-0.5.0/rsparse/R/SoftALS.R | 20 rsparse-0.5.0/rsparse/R/model_FTRL.R | 5 rsparse-0.5.0/rsparse/R/model_LinearFlow.R | 2 rsparse-0.5.0/rsparse/R/model_WRMF.R | 594 +++-- rsparse-0.5.0/rsparse/R/utils.R | 10 rsparse-0.5.0/rsparse/R/zzz.R | 2 rsparse-0.5.0/rsparse/README.md | 74 rsparse-0.5.0/rsparse/configure | 1395 +++++++----- rsparse-0.5.0/rsparse/configure.ac | 18 rsparse-0.5.0/rsparse/inst |only rsparse-0.5.0/rsparse/man/FTRL.Rd | 5 rsparse-0.5.0/rsparse/man/LinearFlow.Rd | 2 rsparse-0.5.0/rsparse/man/MatrixFactorizationRecommender.Rd | 5 rsparse-0.5.0/rsparse/man/WRMF.Rd | 58 rsparse-0.5.0/rsparse/src/FTRL.cpp | 135 - rsparse-0.5.0/rsparse/src/GloVe.cpp | 102 rsparse-0.5.0/rsparse/src/Makevars.in | 3 rsparse-0.5.0/rsparse/src/Makevars.win | 3 rsparse-0.5.0/rsparse/src/RcppExports.cpp | 346 +- rsparse-0.5.0/rsparse/src/factorization_machine.cpp |only rsparse-0.5.0/rsparse/src/kmeans.cpp | 14 rsparse-0.5.0/rsparse/src/matrix_top_product.cpp |only rsparse-0.5.0/rsparse/src/nnls.cpp |only rsparse-0.5.0/rsparse/src/rankmf.cpp |only rsparse-0.5.0/rsparse/src/rsparse.h | 11 rsparse-0.5.0/rsparse/src/utils.cpp | 105 rsparse-0.5.0/rsparse/src/wrmf_explicit.cpp |only rsparse-0.5.0/rsparse/src/wrmf_implicit.cpp |only rsparse-0.5.0/rsparse/src/wrmf_init.cpp |only rsparse-0.5.0/rsparse/tests/testthat.R | 6 rsparse-0.5.0/rsparse/tests/testthat/test-ftrl.R | 2 rsparse-0.5.0/rsparse/tests/testthat/test-soft-als.R | 2 rsparse-0.5.0/rsparse/tests/testthat/test-wrmf.R | 69 50 files changed, 2001 insertions(+), 1173 deletions(-)
Title: R Interface to the 'Flsgen' Neutral Landscape Generator with
Targets on Landscape Indices
Description: Interface to the 'flsgen' neutral landscape generator <https://github.com/dimitri-justeau/flsgen>. It allows to
- Generate fractal terrain;
- Generate landscape structures satisfying user targets over landscape indices;
- Generate landscape raster from landscape structures.
Author: Dimitri Justeau-Allaire, Grégoire Blanchard, Thomas Ibanez, Xavier Lorca, Ghislain Vieilledent, Philippe Birnbaum
Maintainer: Dimitri Justeau-Allaire <dimitri.justeau@gmail.com>
Diff between rflsgen versions 0.1.1 dated 2021-11-25 and 0.1.2 dated 2021-11-30
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/zzz.R | 1 + README.md | 2 +- 5 files changed, 13 insertions(+), 8 deletions(-)
Title: Interface to OGC Web-Services (OWS)
Description: Provides an Interface to Web-Services defined as standards by the Open Geospatial Consortium (OGC), including Web Feature Service
(WFS) for vector data, Catalogue Service (CSW) for ISO/OGC metadata, and associated standards such as the common web-service specification (OWS) and
OGC Filter Encoding. Partial support is provided for the Web Map Service (WMS) and Web Processing Service (WPS). The purpose is to add support for
additional OGC service standards such as Web Coverage Service (WCS), Web Coverage Processing Service (WCPS) or OGC API.
Author: Emmanuel Blondel [aut, cre] (<https://orcid.org/0000-0002-5870-5762>),
Alexandre Bennici [ctb] (<https://orcid.org/0000-0003-2160-3487>),
Norbert Billet [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between ows4R versions 0.1-5 dated 2020-05-27 and 0.2 dated 2021-11-30
DESCRIPTION | 23 +- MD5 | 237 +++++++++++++++++---------- NAMESPACE | 38 ++++ NEWS.md | 33 +++ R/CSWCapabilities.R | 24 +- R/CSWClient.R | 84 +++++++-- R/CSWConstraint.R | 10 - R/CSWDescribeRecord.R | 12 - R/CSWGetRecordById.R | 28 +-- R/CSWGetRecords.R | 39 ++-- R/CSWHarvest.R | 20 +- R/CSWQuery.R | 19 +- R/CSWRecordProperty.R | 10 - R/CSWTransaction.R | 18 +- R/OGCAbstractObject.R | 244 +++++++++++++++++++++++++--- R/OGCExpression.R | 153 ++++++++++++----- R/OGCFilter.R | 16 - R/OWSBoundingBox.R |only R/OWSCapabilities.R | 44 ++++- R/OWSClient.R | 33 +++ R/OWSCodeType.R |only R/OWSGetCapabilities.R | 14 + R/OWSHttpRequest.R |only R/OWSNamespace.R |only R/OWSOperation.R | 13 + R/OWSOperationsMetadata.R | 15 + R/OWSRequest.R | 275 ++++---------------------------- R/OWSServiceIdentification.R | 17 + R/OWSServiceProvider.R | 15 + R/OWSUtils.R | 2 R/OWSWGS84BoundingBox.R |only R/WFSCapabilities.R | 19 -- R/WFSClient.R | 20 +- R/WFSDescribeFeatureType.R | 12 - R/WFSFeatureType.R | 148 ++++++++++------- R/WFSGetFeature.R | 42 ++++ R/WMSCapabilities.R |only R/WMSClient.R |only R/WMSGetFeatureInfo.R |only R/WMSLayer.R |only R/WPSBoundingBoxData.R |only R/WPSCapabilities.R |only R/WPSClient.R |only R/WPSComplexData.R |only R/WPSComplexInputDescription.R |only R/WPSComplexOutputDescription.R |only R/WPSDescribeProcess.R |only R/WPSDescriptionParameter.R |only R/WPSException.R |only R/WPSExecute.R |only R/WPSExecuteResponse.R |only R/WPSFormat.R |only R/WPSInput.R |only R/WPSInputDescription.R |only R/WPSLiteralData.R |only R/WPSLiteralInputDescription.R |only R/WPSLiteralOutputDescription.R |only R/WPSOutput.R |only R/WPSOutputDescription.R |only R/WPSParameter.R |only R/WPSProcess.R |only R/WPSProcessDescription.R |only R/WPSResponseDocument.R |only R/WPSStatus.R |only R/ows4R.R | 12 - R/profile.R | 5 README.md | 40 +++- man/And.Rd | 5 man/BBOX.Rd | 5 man/BinaryComparisonOpType.Rd | 7 man/BinaryLogicOpType.Rd | 5 man/CSWCapabilities.Rd | 16 - man/CSWClient.Rd | 46 ++++- man/CSWConstraint.Rd | 5 man/CSWDescribeRecord.Rd | 7 man/CSWGetRecordById.Rd | 7 man/CSWGetRecords.Rd | 7 man/CSWHarvest.Rd | 7 man/CSWQuery.Rd | 12 - man/CSWRecordProperty.Rd | 7 man/CSWTransaction.Rd | 8 man/Not.Rd | 5 man/OGCAbstractObject.Rd | 16 + man/OGCExpression.Rd | 15 + man/OGCFilter.Rd | 10 - man/OWSBoundingBox.Rd |only man/OWSCapabilities.Rd | 10 - man/OWSClient.Rd | 26 ++- man/OWSCodeType.Rd |only man/OWSGetCapabilities.Rd | 7 man/OWSHttpRequest.Rd |only man/OWSNamespace.Rd |only man/OWSOperation.Rd | 7 man/OWSOperationsMetadata.Rd | 5 man/OWSRequest.Rd | 36 +--- man/OWSServiceIdentification.Rd | 5 man/OWSServiceProvider.Rd | 7 man/OWSUtils.Rd | 4 man/OWSWGS84BoundingBox.Rd |only man/Or.Rd | 5 man/PropertyIsBetween.Rd | 5 man/PropertyIsEqualTo.Rd | 5 man/PropertyIsGreaterThan.Rd | 5 man/PropertyIsGreaterThanOrEqualTo.Rd | 5 man/PropertyIsLessThan.Rd | 5 man/PropertyIsLessThanOrEqualTo.Rd | 5 man/PropertyIsLike.Rd | 5 man/PropertyIsNotEqualTo.Rd | 5 man/PropertyIsNull.Rd | 5 man/UnaryLogicOpType.Rd | 5 man/WFSCapabilities.Rd | 14 - man/WFSClient.Rd | 9 - man/WFSDescribeFeatureType.Rd | 7 man/WFSFeatureType.Rd | 7 man/WFSFeatureTypeElement.Rd | 5 man/WFSGetFeature.Rd | 7 man/WMSCapabilities.Rd |only man/WMSClient.Rd |only man/WMSGetFeatureInfo.Rd |only man/WMSLayer.Rd |only man/WPSBoundingBoxData.Rd |only man/WPSCapabilities.Rd |only man/WPSClient.Rd |only man/WPSComplexData.Rd |only man/WPSComplexInputDescription.Rd |only man/WPSComplexOutputDescription.Rd |only man/WPSDescribeProcess.Rd |only man/WPSDescriptionParameter.Rd |only man/WPSException.Rd |only man/WPSExecute.Rd |only man/WPSExecuteResponse.Rd |only man/WPSFormat.Rd |only man/WPSInput.Rd |only man/WPSInputDescription.Rd |only man/WPSLiteralData.Rd |only man/WPSLiteralInputDescription.Rd |only man/WPSLiteralOutputDescription.Rd |only man/WPSOutput.Rd |only man/WPSOutputDescription.Rd |only man/WPSParameter.Rd |only man/WPSProcess.Rd |only man/WPSProcessDescription.Rd |only man/WPSResponseDocument.Rd |only man/WPSStatus.Rd |only man/getOWSNamespace.Rd |only man/getOWSNamespaces.Rd |only man/ows4R.Rd | 12 - man/registerOWSNamespace.Rd |only man/setOWSNamespaces.Rd |only tests/testthat/test_CSWClient_v2_0_2.R | 24 +- tests/testthat/test_CSWClient_v3_0.R | 8 tests/testthat/test_CSWConstraint.R | 1 tests/testthat/test_CSWRecordProperty.R | 1 tests/testthat/test_WFSClient_v1_0_0.R | 2 tests/testthat/test_WPSClient_v1_0_0.R |only 155 files changed, 1308 insertions(+), 875 deletions(-)
Title: Hierarchical GxE Interactions in a Regularized Regression Model
Description: The method focuses on a single environmental exposure and induces
a main-effect-before-interaction hierarchical structure for the joint selection of interaction terms
in a regularized regression model. For details see Zemlianskaia et al. (2021) <arxiv:2103.13510>.
Author: Natalia Zemlianskaia
Maintainer: Natalia Zemlianskaia <natasha.zemlianskaia@gmail.com>
Diff between gesso versions 1.0.1 dated 2021-06-16 and 1.0.2 dated 2021-11-30
DESCRIPTION | 8 +-- MD5 | 14 ++--- README.md | 4 - build/partial.rdb |binary inst/doc/vignette.R | 22 -------- inst/doc/vignette.Rmd | 34 ------------ inst/doc/vignette.html | 129 ++++++++++++++++++++----------------------------- vignettes/vignette.Rmd | 34 ------------ 8 files changed, 70 insertions(+), 175 deletions(-)
Title: Retrieve Code Decorations
Description: Retrieves code comment decorations for C++
languages of the form '\\ [[xyz]]', which are used for automated
wrapping of C++ functions.
Author: Romain François [aut, cre],
Jim Hester [aut],
RStudio [cph, fnd]
Maintainer: Romain François <romain@rstudio.com>
Diff between decor versions 1.0.0 dated 2020-06-30 and 1.0.1 dated 2021-11-30
DESCRIPTION | 18 ++++++++---------- MD5 | 13 +++++++------ NEWS.md | 6 ++++++ R/decor.R | 15 ++++++++++++++- README.md | 4 ++-- src/blank_comments.cpp |only src/init.c | 14 +++++++------- tests/testthat/test-decor.R | 19 +++++++++++++++++++ 8 files changed, 63 insertions(+), 26 deletions(-)
Title: Bayesian Inference for Directed Acyclic Graphs
Description: Implementation of a collection of MCMC methods for Bayesian structure learning
of directed acyclic graphs (DAGs), both from continuous and discrete data. For efficient
inference on larger DAGs, the space of DAGs is pruned according to the data. To filter
the search space, the algorithm employs a hybrid approach, combining constraint-based
learning with search and score. A reduced search space is initially defined on the basis
of a skeleton obtained by means of the PC-algorithm, and then iteratively improved with
search and score. Search and score is then performed following two approaches:
Order MCMC, or Partition MCMC.
The BGe score is implemented for continuous data and the BDe score is implemented
for binary data or categorical data. The algorithms may provide the maximum a posteriori
(MAP) graph or a sample (a collection of DAGs) from the posterior distribution given the data.
All algorithms are also applicable for structure learning and sampling for dynamic Bayesian networks.
References:
J. Kuipers, P. Suter and G. Moffa (2018) <arXiv:1803.07859v2>,
N. Friedman and D. Koller (2003) <doi:10.1023/A:1020249912095>,
D. Geiger and D. Heckerman (2002) <doi:10.1214/aos/1035844981>,
J. Kuipers and G. Moffa (2017) <doi:10.1080/01621459.2015.1133426>,
M. Kalisch et al.(2012) <doi:10.18637/jss.v047.i11>.
Author: Polina Suter [aut, cre], Jack Kuipers [aut]
Maintainer: Polina Suter <polina.suter@bsse.ethz.ch>
Diff between BiDAG versions 2.0.3 dated 2021-07-28 and 2.0.4 dated 2021-11-30
DESCRIPTION | 10 +-- MD5 | 27 ++++---- NAMESPACE | 1 R/DBNfns.R | 24 ++++++- R/corescore.R | 7 +- R/initpar.R | 154 ++++++++++++++++++++++++++++++++++-------------- R/main.R | 48 +++++++++++--- R/orderMCMCbase.R | 2 R/performanceassess.R | 2 R/scoreagainstDBN.R |only R/scoreagainstdag.R | 5 - R/spacefns.R | 5 + man/scoreagainstDAG.Rd | 2 man/scoreagainstDBN.Rd |only man/scoreagainstDBN3.Rd |only man/scoreparameters.Rd | 8 ++ 16 files changed, 209 insertions(+), 86 deletions(-)
Title: High Precision Timing of R Expressions
Description: Tools to accurately benchmark and analyze execution times for
R expressions.
Author: Jim Hester [aut],
Davis Vaughan [aut, cre],
Drew Schmidt [ctb] (read_proc_file implementation)
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between bench versions 1.1.1 dated 2020-01-13 and 1.1.2 dated 2021-11-30
DESCRIPTION | 34 +++++++++-------- LICENSE |only MD5 | 47 +++++++++++++----------- NAMESPACE | 1 NEWS.md | 12 ++++++ R/autoplot.R | 6 ++- R/bench_process_memory.R | 4 +- R/expression.R | 10 ++++- R/load.R |only R/mark.R | 11 ++++- R/press.R | 5 +- R/time.R | 1 R/utils.R | 37 +++++++++++++++++++ R/workout.R | 10 ++--- R/zzz.R | 1 README.md | 74 +++++++++++++++++++------------------- man/as_bench_mark.Rd | 2 - man/bench-package.Rd | 8 +++- man/bench_load_average.Rd |only man/bench_process_memory.Rd | 4 +- man/figures/README-autoplot-1.png |binary man/press.Rd | 7 ++- man/summary.bench_mark.Rd | 4 +- src/load.c |only src/mark.c | 2 + tests/testthat/test-expression.R |only tests/testthat/test-time.R | 1 27 files changed, 183 insertions(+), 98 deletions(-)
Title: Bayesian Seemingly Unrelated Regression
Description: Bayesian seemingly unrelated regression with general variable selection and dense/sparse covariance matrix. The sparse seemingly unrelated regression is described in Bottolo et al. (2021) <doi:10.1111/rssc.12490>, and the software paper is in Zhao et al. (2021) <arXiv:2104.14008>.
Author: Marco Banterle [aut],
Zhi Zhao [aut, cre],
Leonardo Bottolo [ctb],
Sylvia Richardson [ctb],
Waldir Leoncio [ctb],
Alex Lewin [aut],
Manuela Zucknick [ctb]
Maintainer: Zhi Zhao <zhi.zhao@medisin.uio.no>
Diff between BayesSUR versions 2.0-0 dated 2021-05-05 and 2.0-1 dated 2021-11-30
DESCRIPTION | 19 +++++++++---------- MD5 | 15 ++++++++------- R/BayesSUR.R | 12 +++--------- build/vignette.rds |binary data/exampleGDSC.rda |binary inst/CITATION |only inst/doc/BayesSUR.pdf |binary man/BayesSUR.Rd | 6 +++--- src/RcppExports.cpp | 5 +++++ 9 files changed, 28 insertions(+), 29 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-20 2020.9.18
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-16 0.0.2
2021-11-15 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-20 0.0.5
2021-11-09 0.0.4
2021-11-06 0.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-28 1.3.1
2020-08-10 1.3.0
2020-02-13 1.2.13
2019-06-14 1.2.11
2018-09-24 1.2.9
2016-04-19 1.2.7
2016-04-12 1.2.6-1
2013-10-26 1.2.6
2013-09-08 1.2.5
2013-07-17 1.2.4
2013-05-23 1.2.3
2013-01-16 1.2.2
2012-04-21 1.2.1
2011-08-22 1.1.7
2011-07-29 1.1.6
2011-07-28 1.1.5
Title: Interface to 'Zenodo' REST API
Description: Provides an Interface to 'Zenodo' (<https://zenodo.org>) REST API,
including management of depositions, attribution of DOIs by 'Zenodo' and
upload and download of files.
Author: Emmanuel Blondel [aut, cre] (<https://orcid.org/0000-0002-5870-5762>),
Julien Barde [ctb] (<https://orcid.org/0000-0002-3519-6141>),
Stephen Eglen [ctb] (<https://orcid.org/0000-0001-8607-8025>),
Hans Van Calster [ctb] (<https://orcid.org/0000-0001-8595-8426>),
Floris Vanderhaeghe [ctb] (<https://orcid.org/0000-0002-6378-6229>)
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between zen4R versions 0.5-1 dated 2021-10-29 and 0.5-2 dated 2021-11-30
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 8 ++++++++ R/ZenodoManager.R | 25 ++++++++++++++++++------- R/ZenodoRequest.R | 2 +- R/zen4R.R | 4 ++-- README.md | 2 +- man/zen4R.Rd | 4 ++-- 8 files changed, 43 insertions(+), 24 deletions(-)
Title: Visualizations of Distributions and Uncertainty
Description: Provides primitives for visualizing distributions using 'ggplot2' that are particularly tuned for
visualizing uncertainty in either a frequentist or Bayesian mode. Both analytical distributions (such as
frequentist confidence distributions or Bayesian priors) and distributions represented as samples (such as
bootstrap distributions or Bayesian posterior samples) are easily visualized. Visualization primitives include
but are not limited to: points with multiple uncertainty intervals,
eye plots (Spiegelhalter D., 1999) <doi:10.1111/1467-985X.00120>,
density plots, gradient plots, dot plots (Wilkinson L., 1999) <doi:10.1080/00031305.1999.10474474>,
quantile dot plots (Kay M., Kola T., Hullman J., Munson S., 2016) <doi:10.1145/2858036.2858558>,
complementary cumulative distribution function
barplots (Fernandes M., Walls L., Munson S., Hullman J., Kay M., 2018) <doi:10.1145/3173574.3173718>,
and fit curves with multiple uncertainty ribbons.
Author: Matthew Kay [aut, cre],
Brenton M. Wiernik [ctb]
Maintainer: Matthew Kay <mjskay@northwestern.edu>
Diff between ggdist versions 3.0.0 dated 2021-07-19 and 3.0.1 dated 2021-11-30
ggdist-3.0.0/ggdist/tests/testthat/_snaps/test.stat_dist_slabinterval/fill-type-gradient-with-two-groups-h.svg |only ggdist-3.0.0/ggdist/tests/testthat/_snaps/test.stat_dist_slabinterval/fill-type-gradient-with-two-groups.svg |only ggdist-3.0.0/ggdist/tests/testthat/_snaps/test.stat_sample_slabinterval/fill-type-gradient-with-two-groups-h.svg |only ggdist-3.0.0/ggdist/tests/testthat/_snaps/test.stat_sample_slabinterval/fill-type-gradient-with-two-groups.svg |only ggdist-3.0.1/ggdist/DESCRIPTION | 12 ggdist-3.0.1/ggdist/MD5 | 63 - ggdist-3.0.1/ggdist/NEWS.md | 14 ggdist-3.0.1/ggdist/R/distributions.R | 6 ggdist-3.0.1/ggdist/R/draw_key_slabinterval.R | 6 ggdist-3.0.1/ggdist/R/geom_slabinterval.R | 3 ggdist-3.0.1/ggdist/R/point_interval.R | 12 ggdist-3.0.1/ggdist/R/stat_lineribbon.R | 380 +++++----- ggdist-3.0.1/ggdist/R/stat_sample_slabinterval.R | 10 ggdist-3.0.1/ggdist/R/student_t.R | 162 ++-- ggdist-3.0.1/ggdist/R/tidy_format_translators.R | 242 +++--- ggdist-3.0.1/ggdist/build/partial.rdb |binary ggdist-3.0.1/ggdist/build/vignette.rds |binary ggdist-3.0.1/ggdist/inst/doc/freq-uncertainty-vis.html | 8 ggdist-3.0.1/ggdist/inst/doc/lineribbon.html | 8 ggdist-3.0.1/ggdist/inst/doc/slabinterval.Rmd | 2 ggdist-3.0.1/ggdist/inst/doc/slabinterval.html | 10 ggdist-3.0.1/ggdist/man/ggdist-package.Rd | 52 - ggdist-3.0.1/ggdist/man/marginalize_lkjcorr.Rd | 156 ++-- ggdist-3.0.1/ggdist/man/stat_lineribbon.Rd | 292 +++---- ggdist-3.0.1/ggdist/man/student_t.Rd | 178 ++-- ggdist-3.0.1/ggdist/man/tidy-format-translators.Rd | 146 +-- ggdist-3.0.1/ggdist/tests/testthat/_snaps/test.stat_sample_slabinterval/constant-dist-on-ccdf-with-n-1.svg |only ggdist-3.0.1/ggdist/tests/testthat/_snaps/test.stat_sample_slabinterval/constant-dist-on-ccdf.svg | 2 ggdist-3.0.1/ggdist/tests/testthat/_snaps/test.stat_sample_slabinterval/constant-dist-on-halfeye-with-n-1.svg |only ggdist-3.0.1/ggdist/tests/testthat/_snaps/test.stat_sample_slabinterval/constant-dist-on-halfeye.svg | 4 ggdist-3.0.1/ggdist/tests/testthat/test.distributions.R |only ggdist-3.0.1/ggdist/tests/testthat/test.lkj_marginal.R | 5 ggdist-3.0.1/ggdist/tests/testthat/test.point_interval.R | 2 ggdist-3.0.1/ggdist/tests/testthat/test.stat_dist_slabinterval.R | 1 ggdist-3.0.1/ggdist/tests/testthat/test.stat_sample_slabinterval.R | 16 ggdist-3.0.1/ggdist/vignettes/slabinterval.Rmd | 2 36 files changed, 920 insertions(+), 874 deletions(-)
Title: Multiple Locus Association Mapping on a Genome-Wide Scale
Description: An implementation of multiple-locus association mapping on a genome-wide scale. 'Eagle' can handle inbred and outbred study populations, populations of arbitrary unknown complexity, and data larger than the memory capacity of the computer. Since 'Eagle' is based on linear mixed models, it is best suited to the analysis of data on continuous traits. However, it can tolerate non-normal data. 'Eagle' reports, as its findings, the best set of snp in strongest association with a trait. For users unfamiliar with R, to perform an analysis, run 'OpenGUI()'. This opens a web browser to the menu-driven user interface for the input of data, and for performing genome-wide analysis.
Author: Andrew George [aut, cre],
Joshua Bowden [ctb],
Ryan Stephenson [ctb],
Hyun Kang [ctb],
Noah Zaitlen [ctb],
Claire Wade [ctb],
Andrew Kirby [ctb],
David Heckerman [ctb],
Mark Daly [ctb],
Eleazar Eskin [ctb]
Maintainer: Andrew George <geo047@gmail.com>
Diff between Eagle versions 2.4.5 dated 2021-06-10 and 2.5 dated 2021-11-30
DESCRIPTION | 12 +++++------ MD5 | 16 +++++++-------- NAMESPACE | 2 - NEWS | 5 ++++ R/onAttach.R | 2 - R/print_title.R | 2 - inst/shiny_app/app.R | 40 +++++++++++++++++++------------------- src/RcppExports.cpp | 5 ++++ src/calculate_a_and_vara_rcpp.cpp | 8 +++++-- 9 files changed, 53 insertions(+), 39 deletions(-)