Fri, 03 Dec 2021

Package testthat updated to version 3.1.1 with previous version 3.1.0 dated 2021-10-04

Title: Unit Testing for R
Description: Software testing is important, but, in part because it is frustrating and boring, many of us avoid it. 'testthat' is a testing framework for R that is easy to learn and use, and integrates with your existing 'workflow'.
Author: Hadley Wickham [aut, cre], RStudio [cph, fnd], R Core team [ctb] (Implementation of utils::recover())
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between testthat versions 3.1.0 dated 2021-10-04 and 3.1.1 dated 2021-12-03

 DESCRIPTION                            |    8 -
 MD5                                    |   47 ++++---
 NEWS.md                                |   40 ++++++
 R/edition.R                            |   26 ++++
 R/expect-condition.R                   |  123 ++++++++++++++++----
 R/local.R                              |   11 +
 R/quasi-label.R                        |    7 +
 R/snapshot.R                           |   68 +++++++++--
 README.md                              |    2 
 build/vignette.rds                     |binary
 inst/doc/custom-expectation.html       |  198 ++++++++++++++++++++++++++++++++-
 inst/doc/parallel.html                 |  196 ++++++++++++++++++++++++++++++++
 inst/doc/skipping.html                 |  198 ++++++++++++++++++++++++++++++++-
 inst/doc/snapshotting.html             |  196 ++++++++++++++++++++++++++++++++
 inst/doc/test-fixtures.html            |  198 ++++++++++++++++++++++++++++++++-
 inst/doc/third-edition.html            |  196 ++++++++++++++++++++++++++++++++
 man/expect_error.Rd                    |    7 +
 man/expect_snapshot.Rd                 |    7 +
 tests/testthat/_snaps/R4.1             |only
 tests/testthat/_snaps/rlang-1.0        |only
 tests/testthat/_snaps/rlang-pre-1.0    |only
 tests/testthat/_snaps/snapshot.md      |    6 +
 tests/testthat/helper-testthat.R       |only
 tests/testthat/test-expect-condition.R |   28 ++++
 tests/testthat/test-expect-equality.R  |   20 +++
 tests/testthat/test-snapshot.R         |   56 +++++++++
 26 files changed, 1558 insertions(+), 80 deletions(-)

More information about testthat at CRAN
Permanent link

Package tesseract updated to version 4.2.0 with previous version 4.1.2 dated 2021-09-18

Title: Open Source OCR Engine
Description: Bindings to 'Tesseract' <https://opensource.google/projects/tesseract>: a powerful optical character recognition (OCR) engine that supports over 100 languages. The engine is highly configurable in order to tune the detection algorithms and obtain the best possible results.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between tesseract versions 4.1.2 dated 2021-09-18 and 4.2.0 dated 2021-12-03

 DESCRIPTION         |    8 
 MD5                 |   20 
 NEWS                |    4 
 R/tesseract.R       |    2 
 build/vignette.rds  |binary
 inst/doc/intro.Rmd  |    1 
 inst/doc/intro.html | 1327 ++++++++++++++++++++++++++++++++++++++++++++++++++--
 man/tesseract.Rd    |    2 
 src/RcppExports.cpp |    5 
 src/tesseract.cpp   |   17 
 vignettes/intro.Rmd |    1 
 11 files changed, 1332 insertions(+), 55 deletions(-)

More information about tesseract at CRAN
Permanent link

Package sregsurvey updated to version 0.1.1 with previous version 0.1.0 dated 2021-09-15

Title: Semiparametric Model-Assisted Estimation in Finite Population
Description: It is a framework to fit semiparametric regression estimators for the total parameter of a finite population when the interest variable is asymmetric distributed. The main references for this package are: Sarndal C.E., Swensson B., and Wretman J. (2003,ISBN: 978-0-387-40620-6, "Model Assisted Survey Sampling." Springer-Verlag) and Cardozo C.A and Alonso-Malaver C.E. (2021). "Semi-parametric model assisted estimation in finite populations." In preparation.
Author: Carlos Alberto Cardozo Delgado [aut, cre, cph], Carlos E. Alonso-Malaver [aut]
Maintainer: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>

Diff between sregsurvey versions 0.1.0 dated 2021-09-15 and 0.1.1 dated 2021-12-03

 DESCRIPTION         |   17 +++++++++--------
 MD5                 |   22 ++++++++++++----------
 NAMESPACE           |    3 +++
 R/sreg_ber.R        |   16 +++++++++++-----
 R/sreg_pips.R       |   20 +++++++++++++-------
 R/sreg_poisson.R    |   16 +++++++++++-----
 R/sreg_srswr.R      |   20 +++++++++++++-------
 R/sreg_stsi.R       |only
 man/sreg_ber.Rd     |   14 +++++++++++---
 man/sreg_pips.Rd    |   19 ++++++++++++++-----
 man/sreg_poisson.Rd |   13 ++++++++++---
 man/sreg_srswr.Rd   |   24 ++++++++++++++++++++----
 man/sreg_stsi.Rd    |only
 13 files changed, 127 insertions(+), 57 deletions(-)

More information about sregsurvey at CRAN
Permanent link

Package soilDB updated to version 2.6.9 with previous version 2.6.5 dated 2021-08-21

Title: Soil Database Interface
Description: A collection of functions for reading data from USDA-NCSS soil databases.
Author: Dylan Beaudette [aut], Jay Skovlin [aut], Stephen Roecker [aut], Andrew Brown [aut, cre]
Maintainer: Andrew Brown <andrew.g.brown@usda.gov>

Diff between soilDB versions 2.6.5 dated 2021-08-21 and 2.6.9 dated 2021-12-03

 DESCRIPTION                                    |   16 +-
 MD5                                            |  137 +++++++++---------
 NAMESPACE                                      |   21 --
 NEWS.md                                        |   24 +++
 R/SDA-spatial.R                                |  185 +++++--------------------
 R/SDA_hydric.R                                 |  108 +++++++++++---
 R/SDA_muaggatt.R                               |    9 -
 R/SDA_pmgroupname.R                            |  112 ++++++++-------
 R/SDA_properties.R                             |   52 +++----
 R/SDA_query.R                                  |   28 +--
 R/fetchEDIT_tools.R                            |    5 
 R/fetchHenry.R                                 |  177 +++++++++++++++--------
 R/fetchKSSL.R                                  |   40 +++--
 R/fetchNASIS.R                                 |    1 
 R/fetchNASISWebReport.R                        |   80 ----------
 R/fetchNASIS_components.R                      |   46 +++---
 R/fetchNASIS_pedons.R                          |   10 -
 R/fetchNASIS_report.R                          |    2 
 R/fetchOSD.R                                   |   10 -
 R/fetchPedonPC.R                               |    4 
 R/fetchSCAN.R                                  |  149 +++++++++++---------
 R/fetchSDA_spatial.R                           |   15 +-
 R/getHzErrorsPedonPC.R                         |    2 
 R/get_OSD.R                                    |  122 ++++++++++++----
 R/get_colors_from_pedon_db.R                   |   48 +++---
 R/get_component_data_from_NASIS_db.R           |  125 ++++++++++++++--
 R/get_component_from_SDA.R                     |  160 +++------------------
 R/get_hz_data_from_pedon_db.R                  |    2 
 R/mix_and_clean_colors.R                       |    2 
 R/simplfyFragmentData.R                        |  105 +++++++-------
 R/simplifyArtifactData.R                       |   49 +++---
 R/taxaExtent.R                                 |   33 ----
 R/utils.R                                      |   18 ++
 R/waterDayYear.R                               |   18 +-
 build/partial.rdb                              |binary
 man/SDA_query.Rd                               |   20 --
 man/SDA_spatialQuery.Rd                        |    6 
 man/fetchKSSL.Rd                               |    2 
 man/fetchNASISWebReport.Rd                     |   80 ----------
 man/fetchOSD.Rd                                |    8 -
 man/fetchSCAN.Rd                               |    5 
 man/fetchSDA.Rd                                |  116 ---------------
 man/get_EDIT_ecoclass_by_geoUnit.Rd            |    2 
 man/get_OSD.Rd                                 |    2 
 man/get_SDA_hydric.Rd                          |   27 +++
 man/get_SDA_muaggatt.Rd                        |    4 
 man/get_SDA_pmgroupname.Rd                     |   17 ++
 man/get_SDA_property.Rd                        |    6 
 man/get_component_data_from_NASIS_db.Rd        |    3 
 man/processSDA_WKT.Rd                          |    6 
 man/simplifyFragmentData.Rd                    |   42 ++++-
 man/taxaExtent.Rd                              |   29 ---
 tests/testthat/test-SDA_hydric.R               |   11 +
 tests/testthat/test-SDA_interpretations.R      |    4 
 tests/testthat/test-SDA_muaggatt.R             |    4 
 tests/testthat/test-SDA_pmgroupname.R          |    8 -
 tests/testthat/test-SDA_properties.R           |    6 
 tests/testthat/test-SDA_query.R                |   19 ++
 tests/testthat/test-fetchEDIT_tools.R          |    3 
 tests/testthat/test-fetchHenry.R               |only
 tests/testthat/test-fetchKSSL.R                |    9 +
 tests/testthat/test-fetchNASIS.R               |    4 
 tests/testthat/test-fetchOSD.R                 |   37 ++---
 tests/testthat/test-fetchSCAN.R                |   10 +
 tests/testthat/test-fetchSDA_spatial.R         |    4 
 tests/testthat/test-get_OSD.R                  |   47 +++++-
 tests/testthat/test-multi-row-simplification.R |   11 +
 tests/testthat/test-simplifyArtifactData.R     |    8 -
 tests/testthat/test-simplifyFragmentData.R     |   22 +-
 tests/testthat/test-waterDayYear.R             |   32 ++++
 70 files changed, 1272 insertions(+), 1257 deletions(-)

More information about soilDB at CRAN
Permanent link

Package mpath updated to version 0.4-2.20 with previous version 0.4-2.19 dated 2021-04-05

Title: Regularized Linear Models
Description: Algorithms compute concave convex (CC) estimators including robust (penalized) generalized linear models and robust support vector machines via the COCO - composite optimization by conjugation operator. The package also contains penalized Poisson, negative binomial, zero-inflated Poisson, zero-inflated negative binomial regression models and robust models with non-convex loss functions. Wang et al. (2014) <doi:10.1002/sim.6314>, Wang et al. (2015) <doi:10.1002/bimj.201400143>, Wang et al. (2016) <doi:10.1177/0962280214530608>, Wang (2021) <doi:10.1007/s11749-021-00770-2>, Wang (2020) <arXiv:2010.02848>.
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, and Patrick Breheny
Maintainer: Zhu Wang <wangz1@uthscsa.edu>

Diff between mpath versions 0.4-2.19 dated 2021-04-05 and 0.4-2.20 dated 2021-12-03

 DESCRIPTION                      |   10 ++++-----
 MD5                              |   41 +++++++++++++++++++--------------------
 NEWS                             |    5 ++++
 R/glmregNB.R                     |    2 -
 R/zipath.R                       |    3 +-
 build/partial.rdb                |only
 build/vignette.rds               |binary
 inst/doc/brcancer.pdf            |binary
 inst/doc/kkt.pdf                 |binary
 inst/doc/static_brcancer.pdf     |binary
 inst/doc/static_ccglmExample.pdf |binary
 inst/doc/static_ccsvmExample.pdf |binary
 inst/doc/static_german.pdf       |binary
 man/cv.nclreg.Rd                 |    9 ++++----
 man/cv.nclreg_fit.Rd             |    9 ++++----
 man/cv.zipath.Rd                 |    2 +
 man/ncl.Rd                       |    9 ++++----
 man/ncl_fit.Rd                   |    9 ++++----
 man/nclreg.Rd                    |    9 ++++----
 man/nclreg_fit.Rd                |   11 +++++-----
 man/zipath_fit.Rd                |    4 +--
 vignettes/mpath.bib              |   13 +++---------
 22 files changed, 72 insertions(+), 64 deletions(-)

More information about mpath at CRAN
Permanent link

New package mispitools with initial version 0.1.0
Package: mispitools
Title: Missing Person Identification Tools
Version: 0.1.0
Description: Open-source software for computing Likelihood ratios thresholds and error rates in DNA kinship testingi. Marsico FL. et al (2021) <doi:10.1016/j.fsigen.2021.102519>.
License: GPL (>= 3)
Encoding: UTF-8
Imports: forrel, pedtools, plotly, dplyr, highcharter
URL: https://github.com/MarsicoFL/mispitools
BugReports: https://github.com/MarsicoFL/mispitools/issues
Depends: R (>= 2.10)
NeedsCompilation: no
Packaged: 2021-12-03 18:01:39 UTC; franco
Author: Franco Marsico [aut, cre] (<https://orcid.org/0000-0002-0740-5516>)
Maintainer: Franco Marsico <franco.lmarsico@gmail.com>
Repository: CRAN
Date/Publication: 2021-12-03 22:50:12 UTC

More information about mispitools at CRAN
Permanent link

Package mapsPERU updated to version 1.0.2 with previous version 0.1.3 dated 2021-10-30

Title: Maps of Peru
Description: Information of the centroids and geographical limits of the regions, departments, provinces and districts of Peru.
Author: Jorge L. C. Musaja [aut, cre]
Maintainer: Jorge L. C. Musaja <musajajorge@gmail.com>

Diff between mapsPERU versions 0.1.3 dated 2021-10-30 and 1.0.2 dated 2021-12-03

 mapsPERU-0.1.3/mapsPERU/R/boundaries_DEP.R      |only
 mapsPERU-0.1.3/mapsPERU/R/boundaries_REG.R      |only
 mapsPERU-0.1.3/mapsPERU/R/centroids_DEP.R       |only
 mapsPERU-0.1.3/mapsPERU/R/centroids_REG.R       |only
 mapsPERU-0.1.3/mapsPERU/data/boundaries_DEP.rda |only
 mapsPERU-0.1.3/mapsPERU/data/boundaries_REG.rda |only
 mapsPERU-0.1.3/mapsPERU/data/centroids_DEP.rda  |only
 mapsPERU-0.1.3/mapsPERU/data/centroids_REG.rda  |only
 mapsPERU-0.1.3/mapsPERU/man/boundaries_DEP.Rd   |only
 mapsPERU-0.1.3/mapsPERU/man/boundaries_REG.Rd   |only
 mapsPERU-0.1.3/mapsPERU/man/centroids_DEP.Rd    |only
 mapsPERU-0.1.3/mapsPERU/man/centroids_REG.Rd    |only
 mapsPERU-1.0.2/mapsPERU/DESCRIPTION             |    8 +++---
 mapsPERU-1.0.2/mapsPERU/MD5                     |   29 ++++++++++++------------
 mapsPERU-1.0.2/mapsPERU/R/map_DEP.R             |only
 mapsPERU-1.0.2/mapsPERU/R/map_DIST.R            |only
 mapsPERU-1.0.2/mapsPERU/R/map_PROV.R            |only
 mapsPERU-1.0.2/mapsPERU/R/map_REG.R             |only
 mapsPERU-1.0.2/mapsPERU/R/msg.R                 |only
 mapsPERU-1.0.2/mapsPERU/data/map_DEP.rda        |only
 mapsPERU-1.0.2/mapsPERU/data/map_DIST.rda       |only
 mapsPERU-1.0.2/mapsPERU/data/map_PROV.rda       |only
 mapsPERU-1.0.2/mapsPERU/data/map_REG.rda        |only
 mapsPERU-1.0.2/mapsPERU/man/map_DEP.Rd          |only
 mapsPERU-1.0.2/mapsPERU/man/map_DIST.Rd         |only
 mapsPERU-1.0.2/mapsPERU/man/map_PROV.Rd         |only
 mapsPERU-1.0.2/mapsPERU/man/map_REG.Rd          |only
 mapsPERU-1.0.2/mapsPERU/man/mapsPERU-package.Rd |    2 -
 28 files changed, 20 insertions(+), 19 deletions(-)

More information about mapsPERU at CRAN
Permanent link

Package mailR updated to version 0.8 with previous version 0.4.1 dated 2015-01-13

Title: A Utility to Send Emails from R
Description: Interface to Apache Commons Email to send emails from R.
Author: Rahul Premraj
Maintainer: Rahul Premraj <r.premraj+mailR@gmail.com>

Diff between mailR versions 0.4.1 dated 2015-01-13 and 0.8 dated 2021-12-03

 mailR-0.4.1/mailR/inst/java/commons-email-1.3.3.jar |only
 mailR-0.8/mailR/DESCRIPTION                         |   14 -
 mailR-0.8/mailR/MD5                                 |   17 -
 mailR-0.8/mailR/NAMESPACE                           |    3 
 mailR-0.8/mailR/R/mailR.R                           |  185 ++++++++++++--------
 mailR-0.8/mailR/README.md                           |  100 ++++++++--
 mailR-0.8/mailR/inst/java/activation.jar            |only
 mailR-0.8/mailR/inst/java/commons-email-1.5.jar     |only
 mailR-0.8/mailR/inst/java/javax.mail.jar            |binary
 mailR-0.8/mailR/java/README                         |   10 -
 mailR-0.8/mailR/man/send.mail.Rd                    |   33 ++-
 11 files changed, 245 insertions(+), 117 deletions(-)

More information about mailR at CRAN
Permanent link

Package easyDifferentialGeneCoexpression updated to version 0.8 with previous version 0.7 dated 2021-12-02

Title: Easily Computes the Differential Coexpression Analysis
Description: A function that reads in the GEO code of a list of probesets or gene symbols, a gene expression dataset GEO accession code, the name of the dataset feature discriminating the two conditions for the differential coexpression, and the values of the two different conditions for the differential coexpression. If the input gene list is made of gene symbols, this package associates the probesets to these gene symbols, if found. Platforms available: GPL80, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.
Author: Davide Chicco [aut, cre] (<https://orcid.org/0000-0001-9655-7142>)
Maintainer: Davide Chicco <davidechicco@davidechicco.it>

Diff between easyDifferentialGeneCoexpression versions 0.7 dated 2021-12-02 and 0.8 dated 2021-12-03

 DESCRIPTION                          |   12 +++++-----
 MD5                                  |    4 +--
 R/easyDifferentialGeneCoexpression.r |   39 ++++++++++++++++++++++-------------
 3 files changed, 33 insertions(+), 22 deletions(-)

More information about easyDifferentialGeneCoexpression at CRAN
Permanent link

Package BayesMallows updated to version 1.1.0 with previous version 1.0.4 dated 2021-11-17

Title: Bayesian Preference Learning with the Mallows Rank Model
Description: An implementation of the Bayesian version of the Mallows rank model (Vitelli et al., Journal of Machine Learning Research, 2018 <https://jmlr.org/papers/v18/15-481.html>; Crispino et al., Annals of Applied Statistics, 2019 <doi:10.1214/18-AOAS1203>). Both Metropolis-Hastings and sequential Monte Carlo algorithms for estimating the models are available. Cayley, footrule, Hamming, Kendall, Spearman, and Ulam distances are supported in the models. The rank data to be analyzed can be in the form of complete rankings, top-k rankings, partially missing rankings, as well as consistent and inconsistent pairwise preferences. Several functions for plotting and studying the posterior distributions of parameters are provided. The package also provides functions for estimating the partition function (normalizing constant) of the Mallows rank model, both with the importance sampling algorithm of Vitelli et al. and asymptotic approximation with the IPFP algorithm (Mukherjee, Annals of Statistics, 2016 <doi:10.1214/15-AOS1389>).
Author: Oystein Sorensen [aut, cre] (<https://orcid.org/0000-0003-0724-3542>), Valeria Vitelli [aut] (<https://orcid.org/0000-0002-6746-0453>), Marta Crispino [aut], Qinghua Liu [aut], Cristina Mollica [aut], Luca Tardella [aut], Anja Stein [aut], Waldir Leoncio [ctr]
Maintainer: Oystein Sorensen <oystein.sorensen.1985@gmail.com>

Diff between BayesMallows versions 1.0.4 dated 2021-11-17 and 1.1.0 dated 2021-12-03

 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_assess_convergence.R                  |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_compute_consensus.R                   |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_compute_mallows.R                     |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_distance_function.R                   |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_estimate_partition_function.R         |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_expected_dist.R                       |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_generate_ranking.R                    |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_lik_db_mix.R                          |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_mcmc_function.R                       |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_misc_cpp.R                            |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_misc_functions.R                      |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_partition_function.R                  |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_plot.R                                |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_plot_elbow.R                          |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_plot_top_k.R                          |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_print.R                               |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_random_number_seed.R                  |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_rank_conversion.R                     |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_rank_freq_distr.R                     |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_sample_mallows.R                      |only
 BayesMallows-1.0.4/BayesMallows/tests/testthat/test_transitive_closure.R                  |only
 BayesMallows-1.1.0/BayesMallows/DESCRIPTION                                               |   38 
 BayesMallows-1.1.0/BayesMallows/MD5                                                       |  192 ++--
 BayesMallows-1.1.0/BayesMallows/NAMESPACE                                                 |   28 
 BayesMallows-1.1.0/BayesMallows/NEWS.md                                                   |   17 
 BayesMallows-1.1.0/BayesMallows/R/RcppExports.R                                           |  461 +++++++++-
 BayesMallows-1.1.0/BayesMallows/R/assess_convergence.R                                    |   10 
 BayesMallows-1.1.0/BayesMallows/R/assign_cluster.R                                        |   14 
 BayesMallows-1.1.0/BayesMallows/R/compute_consensus.R                                     |  272 +++++
 BayesMallows-1.1.0/BayesMallows/R/compute_mallows.R                                       |    9 
 BayesMallows-1.1.0/BayesMallows/R/compute_mallows_mixtures.R                              |    2 
 BayesMallows-1.1.0/BayesMallows/R/compute_posterior_intervals.R                           |  165 +++
 BayesMallows-1.1.0/BayesMallows/R/data.R                                                  |   18 
 BayesMallows-1.1.0/BayesMallows/R/generate_constraints.R                                  |   23 
 BayesMallows-1.1.0/BayesMallows/R/generate_initial_ranking.R                              |    2 
 BayesMallows-1.1.0/BayesMallows/R/misc.R                                                  |   16 
 BayesMallows-1.1.0/BayesMallows/R/misc_likelihood.R                                       |    4 
 BayesMallows-1.1.0/BayesMallows/R/plot_elbow.R                                            |    4 
 BayesMallows-1.1.0/BayesMallows/R/plot_top_k.R                                            |   12 
 BayesMallows-1.1.0/BayesMallows/R/predict_top_k.R                                         |   14 
 BayesMallows-1.1.0/BayesMallows/R/print.BayesMallowsMixtures.R                            |    4 
 BayesMallows-1.1.0/BayesMallows/R/rank_conversion.R                                       |    9 
 BayesMallows-1.1.0/BayesMallows/R/sample_mallows.R                                        |   23 
 BayesMallows-1.1.0/BayesMallows/R/smc_post_processing_functions.R                         |only
 BayesMallows-1.1.0/BayesMallows/build/partial.rdb                                         |binary
 BayesMallows-1.1.0/BayesMallows/build/vignette.rds                                        |binary
 BayesMallows-1.1.0/BayesMallows/data/data_10_6_smc.rda                                    |only
 BayesMallows-1.1.0/BayesMallows/inst/CITATION                                             |    1 
 BayesMallows-1.1.0/BayesMallows/inst/REFERENCES.bib                                       |   74 +
 BayesMallows-1.1.0/BayesMallows/inst/doc/SMC-Mallows.R                                    |only
 BayesMallows-1.1.0/BayesMallows/inst/doc/SMC-Mallows.Rmd                                  |only
 BayesMallows-1.1.0/BayesMallows/inst/doc/SMC-Mallows.html                                 |only
 BayesMallows-1.1.0/BayesMallows/inst/examples/compute_consensus_example.R                 |    8 
 BayesMallows-1.1.0/BayesMallows/inst/examples/compute_mallows_mixtures_example.R          |   13 
 BayesMallows-1.1.0/BayesMallows/inst/examples/label_switching_example.R                   |   23 
 BayesMallows-1.1.0/BayesMallows/inst/examples/metropolis_hastings_alpha_example.R         |only
 BayesMallows-1.1.0/BayesMallows/inst/examples/obs_freq_example.R                          |   23 
 BayesMallows-1.1.0/BayesMallows/inst/examples/smc_mallows_new_users_complete_example.R    |only
 BayesMallows-1.1.0/BayesMallows/man/calculate_backward_probability.Rd                     |only
 BayesMallows-1.1.0/BayesMallows/man/calculate_forward_probability.Rd                      |only
 BayesMallows-1.1.0/BayesMallows/man/compute_consensus.BayesMallows.Rd                     |only
 BayesMallows-1.1.0/BayesMallows/man/compute_consensus.Rd                                  |   37 
 BayesMallows-1.1.0/BayesMallows/man/compute_consensus.consensus_SMCMallows.Rd             |only
 BayesMallows-1.1.0/BayesMallows/man/compute_mallows_mixtures.Rd                           |   13 
 BayesMallows-1.1.0/BayesMallows/man/compute_posterior_intervals.BayesMallows.Rd           |only
 BayesMallows-1.1.0/BayesMallows/man/compute_posterior_intervals.Rd                        |   22 
 BayesMallows-1.1.0/BayesMallows/man/compute_posterior_intervals.SMCMallows.Rd             |only
 BayesMallows-1.1.0/BayesMallows/man/compute_posterior_intervals_alpha.Rd                  |only
 BayesMallows-1.1.0/BayesMallows/man/compute_posterior_intervals_rho.Rd                    |only
 BayesMallows-1.1.0/BayesMallows/man/compute_rho_consensus.Rd                              |only
 BayesMallows-1.1.0/BayesMallows/man/correction_kernel.Rd                                  |only
 BayesMallows-1.1.0/BayesMallows/man/correction_kernel_pseudo.Rd                           |only
 BayesMallows-1.1.0/BayesMallows/man/figures/README-unnamed-chunk-5-1.png                  |binary
 BayesMallows-1.1.0/BayesMallows/man/figures/README-unnamed-chunk-6-1.png                  |binary
 BayesMallows-1.1.0/BayesMallows/man/generate_initial_ranking.Rd                           |    2 
 BayesMallows-1.1.0/BayesMallows/man/get_mallows_loglik.Rd                                 |only
 BayesMallows-1.1.0/BayesMallows/man/get_sample_probabilities.Rd                           |only
 BayesMallows-1.1.0/BayesMallows/man/label_switching.Rd                                    |   23 
 BayesMallows-1.1.0/BayesMallows/man/leap_and_shift_probs.Rd                               |only
 BayesMallows-1.1.0/BayesMallows/man/metropolis_hastings_alpha.Rd                          |only
 BayesMallows-1.1.0/BayesMallows/man/metropolis_hastings_aug_ranking.Rd                    |only
 BayesMallows-1.1.0/BayesMallows/man/metropolis_hastings_aug_ranking_pseudo.Rd             |only
 BayesMallows-1.1.0/BayesMallows/man/metropolis_hastings_rho.Rd                            |only
 BayesMallows-1.1.0/BayesMallows/man/obs_freq.Rd                                           |   23 
 BayesMallows-1.1.0/BayesMallows/man/plot_alpha_posterior.Rd                               |only
 BayesMallows-1.1.0/BayesMallows/man/plot_elbow.Rd                                         |   13 
 BayesMallows-1.1.0/BayesMallows/man/plot_rho_posterior.Rd                                 |only
 BayesMallows-1.1.0/BayesMallows/man/sample_dataset.Rd                                     |only
 BayesMallows-1.1.0/BayesMallows/man/smc_mallows_new_item_rank.Rd                          |only
 BayesMallows-1.1.0/BayesMallows/man/smc_mallows_new_item_rank_alpha_fixed.Rd              |only
 BayesMallows-1.1.0/BayesMallows/man/smc_mallows_new_users_complete.Rd                     |only
 BayesMallows-1.1.0/BayesMallows/man/smc_mallows_new_users_partial.Rd                      |only
 BayesMallows-1.1.0/BayesMallows/man/smc_mallows_new_users_partial_alpha_fixed.Rd          |only
 BayesMallows-1.1.0/BayesMallows/man/smc_processing.Rd                                     |only
 BayesMallows-1.1.0/BayesMallows/src/RcppExports.cpp                                       |  305 ++++++
 BayesMallows-1.1.0/BayesMallows/src/distances.cpp                                         |    1 
 BayesMallows-1.1.0/BayesMallows/src/misc.cpp                                              |   20 
 BayesMallows-1.1.0/BayesMallows/src/misc.h                                                |    1 
 BayesMallows-1.1.0/BayesMallows/src/missing_data.cpp                                      |    2 
 BayesMallows-1.1.0/BayesMallows/src/smc.h                                                 |only
 BayesMallows-1.1.0/BayesMallows/src/smc_calculate_backward_probability.cpp                |only
 BayesMallows-1.1.0/BayesMallows/src/smc_calculate_forward_probability.cpp                 |only
 BayesMallows-1.1.0/BayesMallows/src/smc_correction_kernel.cpp                             |only
 BayesMallows-1.1.0/BayesMallows/src/smc_correction_kernel_pseudo.cpp                      |only
 BayesMallows-1.1.0/BayesMallows/src/smc_get_mallows_loglik.cpp                            |only
 BayesMallows-1.1.0/BayesMallows/src/smc_get_sample_probabilities.cpp                      |only
 BayesMallows-1.1.0/BayesMallows/src/smc_leap_and_shift_probs.cpp                          |only
 BayesMallows-1.1.0/BayesMallows/src/smc_mallows_new_item_rank.cpp                         |only
 BayesMallows-1.1.0/BayesMallows/src/smc_mallows_new_item_rank_alpha_fixed.cpp             |only
 BayesMallows-1.1.0/BayesMallows/src/smc_mallows_new_users_complete.cpp                    |only
 BayesMallows-1.1.0/BayesMallows/src/smc_mallows_new_users_partial.cpp                     |only
 BayesMallows-1.1.0/BayesMallows/src/smc_mallows_new_users_partial_alpha_fixed.cpp         |only
 BayesMallows-1.1.0/BayesMallows/src/smc_metropolis_hastings_alpha.cpp                     |only
 BayesMallows-1.1.0/BayesMallows/src/smc_metropolis_hastings_aug_ranking.cpp               |only
 BayesMallows-1.1.0/BayesMallows/src/smc_metropolis_hastings_aug_ranking_pseudo.cpp        |only
 BayesMallows-1.1.0/BayesMallows/src/smc_metropolis_hastings_rho.cpp                       |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat.R                                          |    1 
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-assess_convergence.R                  |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-bulletproofing.R                      |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-classes_compute_consensus_posterior.R |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-compute_consensus.R                   |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-compute_mallows.R                     |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-distance_function.R                   |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-estimate_partition_function.R         |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-expected_dist.R                       |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-generate_ranking.R                    |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-lik_db_mix.R                          |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-mcmc_function.R                       |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-misc_cpp.R                            |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-misc_functions.R                      |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-partition_function.R                  |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-plot.R                                |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-plot_elbow.R                          |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-plot_top_k.R                          |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-print.R                               |   29 
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-random_number_seed.R                  |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-rank_conversion.R                     |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-rank_freq_distr.R                     |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-sample_mallows.R                      |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-smc_compute_rho_consensus.R           |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-smc_individual_functions.R            |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-smc_mallows_complete_rankings.R       |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-smc_mallows_new_item_rank.R           |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-smc_mallows_partial_rankings.R        |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-smc_pseudolikelihood.R                |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-smc_uniform.R                         |only
 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-transitive_closure.R                  |only
 BayesMallows-1.1.0/BayesMallows/vignettes/SMC-Mallows.Rmd                                 |only
 148 files changed, 1664 insertions(+), 307 deletions(-)

More information about BayesMallows at CRAN
Permanent link

Package tsibble updated to version 1.1.1 with previous version 1.1.0 dated 2021-10-22

Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') for temporal data in an data- and model-oriented format. The 'tsibble' provides tools to easily manipulate and analyse temporal data, such as filling in time gaps and aggregating over calendar periods.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>), Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>), Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>), Mitchell O'Hara-Wild [aut] (<https://orcid.org/0000-0001-6729-7695>), Tyler Smith [ctb], Wil Davis [ctb]
Maintainer: Earo Wang <earo.wang@gmail.com>

Diff between tsibble versions 1.1.0 dated 2021-10-22 and 1.1.1 dated 2021-12-03

 DESCRIPTION                       |    6 -
 MD5                               |   34 +++---
 NAMESPACE                         |    3 
 NEWS.md                           |    5 
 R/gaps.R                          |   18 ++-
 R/yearmonth.R                     |   12 ++
 R/yearquarter.R                   |   19 +++
 R/yearweek.R                      |   16 ++-
 README.md                         |    6 -
 build/tsibble.pdf                 |binary
 inst/doc/faq.html                 |  196 +++++++++++++++++++++++++++++++++++++-
 inst/doc/implicit-na.html         |  196 +++++++++++++++++++++++++++++++++++++-
 inst/doc/intro-tsibble.html       |  196 +++++++++++++++++++++++++++++++++++++-
 man/year-month.Rd                 |    8 +
 man/year-quarter.Rd               |    8 +
 man/year-week.Rd                  |   13 ++
 tests/testthat/test-gaps.R        |    4 
 tests/testthat/test-yearquarter.R |    2 
 18 files changed, 701 insertions(+), 41 deletions(-)

More information about tsibble at CRAN
Permanent link

Package lares updated to version 5.0.4 with previous version 5.0.3 dated 2021-11-16

Title: Analytics, Data Mining & Machine Learning Sidekick
Description: Auxiliary package for better/faster analytics, visualization, data mining, and machine learning tasks. With a wide variety of family functions, like Machine Learning, Data Wrangling, Exploratory, and Scrapper, it helps the analyst or data scientist to get quick and robust results, without the need of repetitive coding or extensive programming skills.
Author: Bernardo Lares [aut, cre]
Maintainer: Bernardo Lares <laresbernardo@gmail.com>

Diff between lares versions 5.0.3 dated 2021-11-16 and 5.0.4 dated 2021-12-03

 DESCRIPTION              |    6 -
 MD5                      |   14 +--
 R/correlations.R         |    2 
 R/onehotencoding.R       |  184 ++++++++++++++++++++++----------------------
 R/other_functions.R      |   15 +--
 inst/doc/h2o_automl.html |  194 +++++++++++++++++++++++------------------------
 man/balance_data.Rd      |    2 
 man/date_feats.Rd        |    5 -
 8 files changed, 212 insertions(+), 210 deletions(-)

More information about lares at CRAN
Permanent link

Package excluder updated to version 0.3.3 with previous version 0.3.2 dated 2021-11-18

Title: Checks for Exclusion Criteria in Online Data
Description: Data that are collected through online sources such as Mechanical Turk may require excluding rows because of IP address duplication, geolocation, or completion duration. This package facilitates exclusion of these data for Qualtrics datasets.
Author: Jeffrey R. Stevens [aut, cre, cph] (<https://orcid.org/0000-0003-2375-1360>), Joseph O'Brien [rev] (<https://orcid.org/0000-0001-9851-5077>), Julia Silge [rev] (<https://orcid.org/0000-0002-3671-836X>)
Maintainer: Jeffrey R. Stevens <jeffrey.r.stevens@gmail.com>

Diff between excluder versions 0.3.2 dated 2021-11-18 and 0.3.3 dated 2021-12-03

 excluder-0.3.2/excluder/tests/testthat/deprecated |only
 excluder-0.3.3/excluder/DESCRIPTION               |    6 +++---
 excluder-0.3.3/excluder/MD5                       |   13 +++++--------
 excluder-0.3.3/excluder/NEWS.md                   |   13 ++++++++++---
 excluder-0.3.3/excluder/R/location.R              |    2 +-
 excluder-0.3.3/excluder/R/remove_label_rows.R     |   15 ++++++++++++++-
 excluder-0.3.3/excluder/README.md                 |   17 +++++++++++------
 7 files changed, 44 insertions(+), 22 deletions(-)

More information about excluder at CRAN
Permanent link

New package fastshap with initial version 0.0.6
Package: fastshap
Title: Fast Approximate Shapley Values
Version: 0.0.6
Description: Computes fast (relative to other implementations) approximate Shapley values for any supervised learning model. Shapley values help to explain the predictions from any black box model using ideas from game theory; see Strumbel and Kononenko (2014) <doi:10.1007/s10115-013-0679-x> for details.
License: GPL (>= 2)
URL: https://github.com/bgreenwell/fastshap
BugReports: https://github.com/bgreenwell/fastshap/issues
Imports: abind, ggplot2 (>= 3.3.4), gridExtra, matrixStats, plyr, Rcpp (>= 1.0.1), tibble
Suggests: AmesHousing, covr, earth, htmltools, knitr, lightgbm, ranger, reticulate (>= 1.14), rmarkdown, rstudioapi, tinytest, titanic, xgboost
LinkingTo: Rcpp, RcppArmadillo
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2021-12-03 17:15:33 UTC; bgreenwell
Author: Brandon Greenwell [aut, cre] (<https://orcid.org/0000-0002-8120-0084>)
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>
Repository: CRAN
Date/Publication: 2021-12-03 19:20:02 UTC

More information about fastshap at CRAN
Permanent link

New package crestr with initial version 1.0.0
Package: crestr
Title: A Probabilistic Approach to Reconstruct Past Climates Using Biological Climate Proxies
Version: 1.0.0
Description: Applies the CREST climate reconstruction method. It can be used using the calibration data that can be obtained through the package or by importing private data. An ensemble of graphical outputs were designed to facilitate the use of the package and the interpretation of the results. More information can be found form Chevalier (2021) <doi:10.5194/cp-2021-153>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: clipr, DBI, methods, plyr, raster, rgdal, rgeos, RPostgres, scales, sp, stringr, viridis
Suggests: knitr, openxlsx, plot3D, rmarkdown, pals
Depends: R (>= 2.10)
Language: en-us
VignetteBuilder: knitr
URL: https://github.com/mchevalier2/crestr, https://mchevalier2.github.io/crestr/index.html
BugReports: https://github.com/mchevalier2/crestr/issues
NeedsCompilation: no
Packaged: 2021-12-03 13:58:44 UTC; mchevali1
Author: Manuel Chevalier [aut, cre] (<https://orcid.org/0000-0002-8183-9881>)
Maintainer: Manuel Chevalier <chevalier.manuel@gmail.com>
Repository: CRAN
Date/Publication: 2021-12-03 19:20:04 UTC

More information about crestr at CRAN
Permanent link

New package spectator with initial version 0.1.0
Package: spectator
Title: Interface to the 'Spectator Earth' API
Version: 0.1.0
Description: Provides interface to the 'Spectator Earth' API <https://api.spectator.earth/>, mainly for obtaining the acquisition plans and satellite overpasses for Sentinel-1, Sentinel-2 and Landsat-8 satellites. Current position and trajectory can also be obtained for a much larger set of satellites. It is also possible to search the archive for available images over the area of interest for a given (past) period, get the URL links to download the whole image tiles, or alternatively to download the image for just the area of interest based on selected spectral bands.
License: GPL-3
Depends: R (>= 3.5.0)
Imports: geojsonsf, httr, sf
Suggests: calendar, calendR, httptest, knitr, lubridate, lutz, maps, rmarkdown
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
LazyData: true
NeedsCompilation: no
Packaged: 2021-12-03 12:01:45 UTC; zivan
Author: Zivan Karaman [aut, cre, cph] (<https://orcid.org/0000-0002-8933-4589>)
Maintainer: Zivan Karaman <zivan.karaman@gmail.com>
Repository: CRAN
Date/Publication: 2021-12-03 19:00:02 UTC

More information about spectator at CRAN
Permanent link

New package skater with initial version 0.1.0
Package: skater
Title: Utilities for SNP-Based Kinship Analysis
Description: Utilities for single nucleotide polymorphism (SNP) based kinship analysis testing and evaluation. The 'skater' package contains functions for importing, parsing, and analyzing pedigree data, performing relationship degree inference, benchmarking relationship degree classification, and summarizing identity by descent (IBD) segment data. Package functions and methods are described in Turner et al. (2021) "skater: An R package for SNP-based Kinship Analysis, Testing, and Evaluation" <doi:10.1101/2021.07.21.453083>.
Version: 0.1.0
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 3.0.0)
Imports: magrittr, dplyr, tidyr, readr, purrr, kinship2, corrr, grDevices, tibble, rlang
Suggests: rmarkdown, markdown, knitr, testthat (>= 3.0.0)
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-12-03 09:37:01 UTC; turner
Author: Stephen Turner [aut, cre] (<https://orcid.org/0000-0001-9140-9028>), Matthew Scholz [aut] (<https://orcid.org/0000-0003-3686-1227>), VP Nagraj [aut] (<https://orcid.org/0000-0003-0060-566X>), Signature Science, LLC. [cph]
Maintainer: Stephen Turner <vustephen@gmail.com>
Repository: CRAN
Date/Publication: 2021-12-03 18:50:02 UTC

More information about skater at CRAN
Permanent link

New package MulvariateRandomForestVarImp with initial version 0.0.1
Package: MulvariateRandomForestVarImp
Title: Variable Importance Measures for Multivariate Random Forests
Version: 0.0.1
Description: Calculates post-hoc variable importance measures for multivariate random forests. These are given by split improvement for splits defined by feature j as measured using user-defined (i.e. training or test) examples. Importance measures can also be calculated on a per-outcome variable basis using the change in predictions for each split. Both measures can be optionally thresholded to include only splits that produce statistically significant changes as measured by an F-test.
License: GPL (>= 3)
Encoding: UTF-8
Suggests: testthat (>= 3.0.0)
Imports: MultivariateRandomForest (>= 1.1.5), MASS (>= 7.3.0)
URL: https://github.com/Megatvini/VIM/
BugReports: https://github.com/Megatvini/VIM/issues
NeedsCompilation: no
Packaged: 2021-12-03 07:45:57 UTC; Nika
Author: Sikdar Sharmistha [aut], Hooker Giles [aut], Kadiyali Vrinda [ctb], Dogonadze Nika [cre]
Maintainer: Dogonadze Nika <nika.dogonadze@toptal.com>
Repository: CRAN
Date/Publication: 2021-12-03 18:50:07 UTC

More information about MulvariateRandomForestVarImp at CRAN
Permanent link

New package cata with initial version 0.0.10.3
Package: cata
Title: Analysis of Check-All-that-Apply (CATA) Data
Version: 0.0.10.3
Date: 2021-11-30
Author: J.C. Castura [aut, cre, ctb] (<https://orcid.org/0000-0002-1640-833X>)
Maintainer: J.C. Castura <jcastura@compusense.com>
Description: Functions for analyzing check-all-that-apply (CATA) data from consumer and sensory tests. Cochran's Q test, McNemar's test, and Penalty-Lift analysis provided, as described in for CATA data analysis by Meyners, Castura & Carr (2013) <doi:10.1016/j.foodqual.2013.06.010>. Cluster analysis can be performed using b-cluster analysis. The quality of cluster analysis solutions can be evaluated using various measures. The methods related to b-cluster analysis are described in a pre-print manuscript by Castura, Meyners, Varela & Naes (2021) <https://secure.compusense.com/research/wp-content/uploads/2021/12/Castura_bcluster_submitted_20211130.pdf>.
Depends: R (>= 4.1.0)
Imports: grDevices, stats, utils, graphics
License: GPL (>= 2)
LazyData: TRUE
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2021-12-02 22:49:36 UTC; jcastura
Repository: CRAN
Date/Publication: 2021-12-03 18:10:01 UTC

More information about cata at CRAN
Permanent link

New package DeductiveR with initial version 1.0.0
Package: DeductiveR
Title: Deductive Rational Method
Version: 1.0.0
Date: 2021-11-22
Description: Apply the Deductive Rational Method to a monthly series of flow or precipitation data to fill in missing data. The method is as described in: Campos, D.F., (1984, ISBN:9686194444).
License: GPL-3
Encoding: UTF-8
Imports: dplyr, reshape2, ggplot2, moments
Suggests: rmarkdown, knitr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-12-02 20:09:06 UTC; CLAA300697
Author: Alonso Arriagada [aut, cre]
Maintainer: Alonso Arriagada <alonso.arriagada@usach.cl>
Repository: CRAN
Date/Publication: 2021-12-03 17:50:02 UTC

More information about DeductiveR at CRAN
Permanent link

New package amt with initial version 0.1.5
Package: amt
Title: Animal Movement Tools
Version: 0.1.5
Description: Manage and analyze animal movement data. The functionality of 'amt' includes methods to calculate home ranges, track statistics (e.g. step lengths, speed, or turning angles), prepare data for fitting habitat selection analyses, and simulation of space-use from fitted step-selection functions.
License: GPL-3
Encoding: UTF-8
LazyData: true
URL: https://github.com/jmsigner/amt
Depends: R (>= 3.5),
Imports: checkmate, circular, ctmm, dplyr (>= 0.7.0), fitdistrplus, lubridate, magrittr, methods, purrr, raster, Rdpack, Rcpp (>= 0.12.7), rgeos, rlang, sf, sp, survival, tibble, tidyr (>= 1.0.0)
Suggests: adehabitatLT, adehabitatMA, broom, ggplot2, ggraph, geosphere, KernSmooth, FNN, leaflet, moveHMM, move, sessioninfo, spacetime, trajectories, knitr, rmarkdown, tinytest, tidygraph, maptools
LinkingTo: Rcpp
RdMacros: Rdpack
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2021-12-02 22:02:23 UTC; jsigner
Author: Johannes Signer [aut, cre], Brian Smith [ctb], Bjoern Reineking [ctb], Ulrike Schlaegel [ctb], John Fieberg [ctb], Josh O'Brien [ctb], Bernardo Niebuhr [ctb], Scott LaPoint [dtc]
Maintainer: Johannes Signer <jsigner@gwdg.de>
Repository: CRAN
Date/Publication: 2021-12-03 18:00:02 UTC

More information about amt at CRAN
Permanent link

New package AeroSampleR with initial version 0.1.12
Package: AeroSampleR
Title: Estimate Aerosol Particle Collection Through Sample Lines
Version: 0.1.12
Author: Mark Hogue
Maintainer: Mark Hogue <mark.hogue@srs.gov>
Description: Estimate ideal efficiencies of aerosol sampling through sample lines. Functions were developed consistent with the approach described in Hogue, Mark; Thompson, Martha; Farfan, Eduardo; Hadlock, Dennis, (2014), "Hand Calculations for Transport of Radioactive Aerosols through Sampling Systems" Health Phys 106, 5, S78-S87, <doi:10.1097/HP.0000000000000092>.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: dplyr, purrr, magrittr, tidyr, ggplot2, ggthemes, stringr, tidyselect
Depends: R (>= 2.10)
NeedsCompilation: no
Packaged: 2021-12-02 21:44:06 UTC; markh
Repository: CRAN
Date/Publication: 2021-12-03 18:00:07 UTC

More information about AeroSampleR at CRAN
Permanent link

Package Ternary updated to version 1.2.4 with previous version 1.2.3 dated 2021-10-08

Title: Create Ternary Plots
Description: Plots ternary diagrams (simplex plots / Gibbs triangles) using the standard graphics functions. An alternative to 'ggtern', which uses the 'ggplot2' family of plotting functions. Includes a 'Shiny' user interface for point-and-click plotting.
Author: Martin R. Smith [aut, cre, cph] (<https://orcid.org/0000-0001-5660-1727>), Lilian Sanselme [ctb]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>

Diff between Ternary versions 1.2.3 dated 2021-10-08 and 1.2.4 dated 2021-12-03

 Ternary-1.2.3/Ternary/inst/TernaryApp                                           |only
 Ternary-1.2.4/Ternary/DESCRIPTION                                               |    8 -
 Ternary-1.2.4/Ternary/MD5                                                       |   60 ++++------
 Ternary-1.2.4/Ternary/NEWS.md                                                   |    7 +
 Ternary-1.2.4/Ternary/R/Contours.R                                              |   58 +++++++--
 Ternary-1.2.4/Ternary/R/Coordinates.R                                           |   15 +-
 Ternary-1.2.4/Ternary/R/TernaryPlot.R                                           |    8 -
 Ternary-1.2.4/Ternary/R/zzz.R                                                   |    2 
 Ternary-1.2.4/Ternary/README.md                                                 |    9 +
 Ternary-1.2.4/Ternary/build/partial.rdb                                         |binary
 Ternary-1.2.4/Ternary/build/vignette.rds                                        |binary
 Ternary-1.2.4/Ternary/inst/CITATION                                             |   19 +--
 Ternary-1.2.4/Ternary/inst/WORDLIST                                             |    2 
 Ternary-1.2.4/Ternary/inst/doc/Ternary.html                                     |    6 -
 Ternary-1.2.4/Ternary/inst/doc/interpolation.html                               |    4 
 Ternary-1.2.4/Ternary/man/ColourTernary.Rd                                      |    4 
 Ternary-1.2.4/Ternary/man/ReflectedEquivalents.Rd                               |    2 
 Ternary-1.2.4/Ternary/man/TernaryContour.Rd                                     |   28 ++++
 Ternary-1.2.4/Ternary/man/TernaryCoords.Rd                                      |    8 -
 Ternary-1.2.4/Ternary/man/TernaryDensityContour.Rd                              |    2 
 Ternary-1.2.4/Ternary/man/TernaryPlot.Rd                                        |    2 
 Ternary-1.2.4/Ternary/man/TernaryPointValues.Rd                                 |    8 -
 Ternary-1.2.4/Ternary/man/TernaryTiles.Rd                                       |    2 
 Ternary-1.2.4/Ternary/man/TernaryXRange.Rd                                      |    4 
 Ternary-1.2.4/Ternary/man/TriangleCentres.Rd                                    |    2 
 Ternary-1.2.4/Ternary/man/XYToTernary.Rd                                        |    2 
 Ternary-1.2.4/Ternary/tests/testthat/Rplots.pdf                                 |binary
 Ternary-1.2.4/Ternary/tests/testthat/_snaps/Contours/contour-error-handling.svg |only
 Ternary-1.2.4/Ternary/tests/testthat/test-Contours.R                            |   31 +++--
 29 files changed, 183 insertions(+), 110 deletions(-)

More information about Ternary at CRAN
Permanent link

Package tLagPropOdds updated to version 1.5 with previous version 1.2 dated 2021-10-21

Title: Proportional Odds Model with Censored, Time-Lagged Categorical Outcome
Description: Implements a semiparametric estimator for the odds ratio model with censored, time-lagged, ordered categorical outcome in a randomized clinical trial that incorporates baseline and time-dependent information. Tsiatis, A. A. and Davidian, M. (2021) <arXiv:2106.15559>.
Author: Marie Davidian [aut], A. A. Tsiatis [aut], Shannon T. Holloway [aut, cre]
Maintainer: Shannon T. Holloway <sthollow@ncsu.edu>

Diff between tLagPropOdds versions 1.2 dated 2021-10-21 and 1.5 dated 2021-12-03

 DESCRIPTION         |   10 +++++-----
 MD5                 |   16 ++++++++--------
 NEWS                |   13 +++++++++++++
 R/aipw.R            |    8 ++++----
 R/augment.R         |    9 ++++++---
 R/infl.R            |   34 ++++++++++++++++++++++++++++------
 R/kaplanMeier.R     |   15 ++++++++-------
 R/tLagPropOdds.R    |    6 +++---
 man/tLagPropOdds.Rd |    5 +++--
 9 files changed, 78 insertions(+), 38 deletions(-)

More information about tLagPropOdds at CRAN
Permanent link

Package sdmpredictors updated to version 0.2.11 with previous version 0.2.10 dated 2021-09-20

Title: Species Distribution Modelling Predictor Datasets
Description: Terrestrial and marine predictors for species distribution modelling from multiple sources, including WorldClim <https://www.worldclim.org/>,, ENVIREM <https://envirem.github.io/>, Bio-ORACLE <https://bio-oracle.org/> and MARSPEC <http://www.marspec.org/>.
Author: Samuel Bosch [aut], Lennert Tyberghein [ctb], Olivier De Clerck [ctb], Salvador Fernandez [aut, cre], Lennert Schepers [ctb]
Maintainer: Salvador Fernandez <salvador.fernandez@vliz.be>

Diff between sdmpredictors versions 0.2.10 dated 2021-09-20 and 0.2.11 dated 2021-12-03

 DESCRIPTION                       |   12 +++----
 MD5                               |   22 +++++++-------
 NEWS.md                           |    4 ++
 R/get_sysdata.R                   |   31 -------------------
 R/sysdata.rda                     |binary
 build/partial.rdb                 |binary
 inst/doc/quickstart.html          |    4 +-
 tests/testthat/test_compression.R |    4 +-
 tests/testthat/test_get_sysdata.R |   22 --------------
 tests/testthat/test_list.R        |   10 ++++++
 tests/testthat/test_load.R        |   59 --------------------------------------
 tests/testthat/test_stats.R       |    2 -
 12 files changed, 37 insertions(+), 133 deletions(-)

More information about sdmpredictors at CRAN
Permanent link

Package coro updated to version 1.0.2 with previous version 1.0.1 dated 2020-12-17

Title: 'Coroutines' for R
Description: Provides 'coroutines' for R, a family of functions that can be suspended and resumed later on. This includes 'async' functions (which await) and generators (which yield). 'Async' functions are based on the concurrency framework of the 'promises' package. Generators are based on a dependency free iteration protocol defined in 'coro' and are compatible with iterators from the 'reticulate' package.
Author: Lionel Henry [aut, cre], RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>

Diff between coro versions 1.0.1 dated 2020-12-17 and 1.0.2 dated 2021-12-03

 DESCRIPTION                          |   11 ++----
 MD5                                  |   62 +++++++++++++++++------------------
 NEWS.md                              |   12 ++++++
 R/aaa.R                              |    1 
 R/generator.R                        |   22 +++++++-----
 R/iterator-collect.R                 |    2 -
 R/iterator.R                         |   24 +++++++++++--
 R/parser.R                           |    1 
 R/utils-node.R                       |    1 
 R/utils-parser.R                     |    1 
 R/utils-promises.R                   |    1 
 R/utils-vector.R                     |    1 
 R/utils.R                            |    5 --
 build/vignette.rds                   |binary
 inst/doc/generator.html              |   22 ++++++++----
 man/async_ops.Rd                     |    2 -
 man/coro-package.Rd                  |    9 +----
 man/iterator.Rd                      |   32 ++++++++++++++----
 tests/testthat/helper-async.R        |    1 
 tests/testthat/helper-flowery.R      |   17 ++++++---
 tests/testthat/helper-parser.R       |    1 
 tests/testthat/test-async.R          |    1 
 tests/testthat/test-generator.R      |    3 -
 tests/testthat/test-iterator-adapt.R |    1 
 tests/testthat/test-iterator-for.R   |    1 
 tests/testthat/test-iterator.R       |    1 
 tests/testthat/test-parser-block.R   |    1 
 tests/testthat/test-parser-if.R      |    1 
 tests/testthat/test-parser-loop.R    |    1 
 tests/testthat/test-parser.R         |    1 
 tests/testthat/test-step-reduce.R    |    1 
 tests/testthat/test-step.R           |    1 
 32 files changed, 141 insertions(+), 100 deletions(-)

More information about coro at CRAN
Permanent link

Package threeBrain updated to version 0.2.4 with previous version 0.2.3 dated 2021-10-13

Title: 3D Brain Visualization
Description: A fast, interactive cross-platform, and easy to share 'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer' and/or 'AFNI/SUMA' surfaces. The viewer widget can be either standalone or embedded into 'R-shiny' applications. The standalone version only require a web browser with 'WebGL2' support (for example, 'Chrome'). It can be inserted into any websites; see <https://dipterix.org/project/threebrain/>). as an example. The 'R-shiny' support allows the 3D viewer to be dynamically generated from reactive user inputs. This feature has been fully adopted by 'RAVE' <https://openwetware.org/wiki/RAVE>, an interactive toolbox to analyze 'iEEG/eCoG' data. Documentation about 'threeBrain' is provided by <https://dipterix.org/threeBrain/> and several vignettes included in this package. To cite the package, please check our 'NeuroImage' paper by Magnotti, Wang, and Beauchamp (2020, <doi:10.1016/j.neuroimage.2020.117341>), or see 'citation("threeBrain")' for details.
Author: Zhengjia Wang [aut, cre, cph], John Magnotti [aut], Xiang Zhang [ctb, res], Brian Metzger [res], Elizabeth Nesbitt [res], Meng Li [ths], Michael Beauchamp [aut, dtc]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>

Diff between threeBrain versions 0.2.3 dated 2021-10-13 and 0.2.4 dated 2021-12-03

 DESCRIPTION                                           |    6 
 MD5                                                   |   24 
 NEWS.md                                               |   21 
 R/class_animations.R                                  |    4 
 R/class_brain.R                                       |   24 
 R/class_brainatlas.R                                  |   16 
 R/class_multibrain.R                                  |    1 
 R/geom_free.R                                         |    2 
 R/shiny-localization.R                                |   20 
 R/zzz.R                                               |   69 
 build/vignette.rds                                    |binary
 inst/htmlwidgets/lib/dipterixThreeBrain-1.0.1/main.js | 2336 +++++++++++++++---
 man/voxel_cube.Rd                                     |    6 
 13 files changed, 2144 insertions(+), 385 deletions(-)

More information about threeBrain at CRAN
Permanent link

Package QWDAP updated to version 1.1.8 with previous version 1.1.7 dated 2021-11-25

Title: Quantum Walk-Based Data Analysis and Prediction
Description: Modeling and predicting time series based on continuous time quantum.This package can be divided into three parts: Basis Generation, Data Modeling and Prediction, and Model Evaluation according to the analysis process of time series. 'Basis Generation' has realized the continuous time quantum walk simulation for generating modes as the basis. Some regression methods are used to model the observed time series and predict in 'Data Modeling and Prediction', and 'Model Evaluation' can be used to evaluate the data correspondence between two series.
Author: Binghuang Pan [aut, cre], Zhaoyuan Yu [aut], Xu Hu [ctb], Dongshuang Li [ctb], Yuhao Teng [ctb], Xinxin Zhou [ctb]
Maintainer: Binghuang Pan <bright1up@163.com>

Diff between QWDAP versions 1.1.7 dated 2021-11-25 and 1.1.8 dated 2021-12-03

 DESCRIPTION      |    8 ++++----
 MD5              |    6 +++---
 R/var.r          |   12 +++---------
 man/qwdap.var.Rd |    4 +---
 4 files changed, 11 insertions(+), 19 deletions(-)

More information about QWDAP at CRAN
Permanent link

Package littler updated to version 0.3.15 with previous version 0.3.14 dated 2021-10-05

Title: R at the Command-Line via 'r'
Description: A scripting and command-line front-end is provided by 'r' (aka 'littler') as a lightweight binary wrapper around the GNU R language and environment for statistical computing and graphics. While R can be used in batch mode, the r binary adds full support for both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path expression as the first line in scripts) as well as command-line use in standard Unix pipelines. In other words, r provides the R language without the environment.
Author: Dirk Eddelbuettel and Jeff Horner
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between littler versions 0.3.14 dated 2021-10-05 and 0.3.15 dated 2021-12-03

 littler-0.3.14/littler/inst/doc/littler-examples.R       |only
 littler-0.3.14/littler/inst/doc/littler-examples.Rmd     |only
 littler-0.3.14/littler/inst/doc/littler-faq.R            |only
 littler-0.3.14/littler/inst/doc/littler-faq.Rmd          |only
 littler-0.3.14/littler/vignettes/littler-examples.Rmd    |only
 littler-0.3.14/littler/vignettes/littler-faq.Rmd         |only
 littler-0.3.15/littler/ChangeLog                         |   53 +
 littler-0.3.15/littler/DESCRIPTION                       |   12 
 littler-0.3.15/littler/MD5                               |   38 
 littler-0.3.15/littler/README.md                         |   24 
 littler-0.3.15/littler/build/vignette.rds                |binary
 littler-0.3.15/littler/configure                         |   18 
 littler-0.3.15/littler/configure.ac                      |    2 
 littler-0.3.15/littler/inst/NEWS.Rd                      |   21 
 littler-0.3.15/littler/inst/doc/littler-examples.html    |  729 +++++++--------
 littler-0.3.15/littler/inst/doc/littler-examples.md      |only
 littler-0.3.15/littler/inst/doc/littler-faq.html         |  151 +--
 littler-0.3.15/littler/inst/doc/littler-faq.md           |only
 littler-0.3.15/littler/inst/examples/build.r             |    7 
 littler-0.3.15/littler/inst/examples/getRStudioDesktop.r |   18 
 littler-0.3.15/littler/inst/examples/getRStudioServer.r  |   20 
 littler-0.3.15/littler/inst/examples/install2.r          |   13 
 littler-0.3.15/littler/inst/examples/mdweave2html.r      |only
 littler-0.3.15/littler/vignettes/littler-examples.md     |only
 littler-0.3.15/littler/vignettes/littler-faq.md          |only
 littler-0.3.15/littler/vignettes/water.css               |only
 26 files changed, 612 insertions(+), 494 deletions(-)

More information about littler at CRAN
Permanent link

Package irlba updated to version 2.3.4 with previous version 2.3.3 dated 2019-02-05

Title: Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices
Description: Fast and memory efficient methods for truncated singular value decomposition and principal components analysis of large sparse and dense matrices.
Author: Jim Baglama [aut, cph], Lothar Reichel [aut, cph], B. W. Lewis [aut, cre, cph]
Maintainer: B. W. Lewis <blewis@illposed.net>

Diff between irlba versions 2.3.3 dated 2019-02-05 and 2.3.4 dated 2021-12-03

 DESCRIPTION        |   12 ++++++------
 MD5                |   11 ++++++-----
 README             |    3 ++-
 README.md          |only
 build/vignette.rds |binary
 inst/doc/irlba.pdf |binary
 src/irlb.c         |   23 ++++++++++++++---------
 7 files changed, 28 insertions(+), 21 deletions(-)

More information about irlba at CRAN
Permanent link

Package pollen updated to version 0.82.0 with previous version 0.72.0 dated 2020-03-15

Title: Analysis of Aerobiological Data
Description: Supports analysis of aerobiological data. Available features include determination of pollen season limits, replacement of outliers (Kasprzyk and Walanus (2014) <doi:10.1007/s10453-014-9332-8>), calculation of growing degree days (Baskerville and Emin (1969) <doi:10.2307/1933912>), and determination of the base temperature for growing degree days (Yang et al. (1995) <doi:10.1016/0168-1923(94)02185-M).
Author: Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>)
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>

Diff between pollen versions 0.72.0 dated 2020-03-15 and 0.82.0 dated 2021-12-03

 DESCRIPTION                     |   12 -
 MD5                             |   38 +--
 NAMESPACE                       |    3 
 R/base_temp.R                   |only
 R/gdd.R                         |    4 
 R/pollen_season.R               |    4 
 README.md                       |   12 -
 build/vignette.rds              |binary
 inst/doc/gdd.Rmd                |    6 
 inst/doc/gdd.html               |  334 ++++++++--------------------
 inst/doc/intro.R                |    2 
 inst/doc/intro.Rmd              |    9 
 inst/doc/intro.html             |  474 ++++++++++++++--------------------------
 inst/refs.bib                   |only
 man/base_temp.Rd                |only
 man/gdd.Rd                      |    3 
 man/gdd_data.Rd                 |    6 
 man/pollen-package.Rd           |    5 
 man/pollen_count.Rd             |    6 
 tests/testthat/test-base_temp.R |only
 vignettes/gdd.Rmd               |    6 
 vignettes/intro.Rmd             |    9 
 22 files changed, 345 insertions(+), 588 deletions(-)

More information about pollen at CRAN
Permanent link

Package geodata updated to version 0.3-5 with previous version 0.3-2 dated 2021-09-29

Title: Download Geographic Data
Description: Functions for downloading of geographic data for use in spatial data analysis and mapping. The package facilitates access to climate, elevation, soil, species occurrence, and administrative boundary data.
Author: Robert J. Hijmans [cre, aut], Aniruddha Ghosh [ctb], Alex Mandel [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>

Diff between geodata versions 0.3-2 dated 2021-09-29 and 0.3-5 dated 2021-12-03

 DESCRIPTION                |    8 ++---
 MD5                        |   64 ++++++++++++++++++++++-----------------------
 R/countries.R              |    2 -
 R/crop_sacks.R             |    6 ++--
 R/crop_spam.R              |   19 ++++++++++---
 R/crops_monfreda.R         |    4 +-
 R/elevation.R              |   57 ++++++++++------------------------------
 R/gadm.R                   |   12 ++++----
 R/helper-functions.R       |   44 +++++++++++++++++++++++++++++-
 R/landuse.R                |    5 ++-
 R/occurrence.R             |   19 +++++++------
 R/pop.R                    |   18 ++++--------
 R/soil_afsis.R             |   35 +++++++-----------------
 R/soil_grids.R             |    4 +-
 R/soil_isda.R              |    8 ++---
 R/worldclim.R              |   27 +++++++++---------
 build/partial.rdb          |binary
 man/cmip6.Rd               |    3 +-
 man/crop_calendar_Sachs.Rd |    5 ++-
 man/crop_monfreda.Rd       |   13 ++++-----
 man/crop_spam.Rd           |    5 ++-
 man/elevation.Rd           |   12 +++-----
 man/gadm.Rd                |    7 ++--
 man/geodata-package.Rd     |   28 ++++++++++++++++---
 man/landuse.Rd             |    7 ++--
 man/population.Rd          |    3 +-
 man/soil_af.Rd             |    9 ++++--
 man/soil_af_elements.Rd    |    6 ++--
 man/soil_af_isda.Rd        |    5 ++-
 man/soil_grids.Rd          |    5 ++-
 man/soil_grids_vsi.Rd      |    1 
 man/sp_occurrence.Rd       |    3 +-
 man/worldclim.Rd           |    7 ++--
 33 files changed, 247 insertions(+), 204 deletions(-)

More information about geodata at CRAN
Permanent link

Package conleyreg updated to version 0.1.5 with previous version 0.1.4 dated 2021-06-28

Title: Estimations using Conley Standard Errors
Description: Functions calculating Conley (1999) <doi:10.1016/S0304-4076(98)00084-0> standard errors. The package started by merging and extending multiple packages and other published scripts on this econometric technique. It strongly emphasizes computational optimization. Details are available in the function documentation and in the vignette.
Author: Christian Düben [aut, cre], Richard Bluhm [cph], Luis Calderon [cph], Darin Christensen [cph], Timothy Conley [cph], Thiemo Fetzer [cph], Leander Heldring [cph]
Maintainer: Christian Düben <christian.dueben@uni-hamburg.de>

Diff between conleyreg versions 0.1.4 dated 2021-06-28 and 0.1.5 dated 2021-12-03

 conleyreg-0.1.4/conleyreg/src/conleyreg.cpp                    |only
 conleyreg-0.1.4/conleyreg/vignettes/matrix_ctimes.png          |only
 conleyreg-0.1.5/conleyreg/DESCRIPTION                          |   17 
 conleyreg-0.1.5/conleyreg/MD5                                  |   52 
 conleyreg-0.1.5/conleyreg/NAMESPACE                            |   23 
 conleyreg-0.1.5/conleyreg/NEWS.md                              |   15 
 conleyreg-0.1.5/conleyreg/R/RcppExports.R                      |  124 
 conleyreg-0.1.5/conleyreg/R/conleyreg.R                        | 1376 +++++++---
 conleyreg-0.1.5/conleyreg/R/dist_mat.R                         |only
 conleyreg-0.1.5/conleyreg/R/rnd_locations.R                    |only
 conleyreg-0.1.5/conleyreg/README.md                            |    4 
 conleyreg-0.1.5/conleyreg/build/partial.rdb                    |binary
 conleyreg-0.1.5/conleyreg/build/vignette.rds                   |binary
 conleyreg-0.1.5/conleyreg/inst/doc/conleyreg_introduction.R    |   22 
 conleyreg-0.1.5/conleyreg/inst/doc/conleyreg_introduction.Rmd  |   93 
 conleyreg-0.1.5/conleyreg/inst/doc/conleyreg_introduction.html |  224 -
 conleyreg-0.1.5/conleyreg/man/conleyreg.Rd                     |  164 -
 conleyreg-0.1.5/conleyreg/man/dist_mat.Rd                      |only
 conleyreg-0.1.5/conleyreg/man/rnd_locations.Rd                 |only
 conleyreg-0.1.5/conleyreg/src/RcppExports.cpp                  |  579 ++--
 conleyreg-0.1.5/conleyreg/src/XeeXhC.cpp                       |only
 conleyreg-0.1.5/conleyreg/src/XeeXhC.h                         |only
 conleyreg-0.1.5/conleyreg/src/XeeXhC_R.cpp                     |only
 conleyreg-0.1.5/conleyreg/src/dist_mat.cpp                     |only
 conleyreg-0.1.5/conleyreg/src/distance_functions.cpp           |only
 conleyreg-0.1.5/conleyreg/src/distance_functions.h             |only
 conleyreg-0.1.5/conleyreg/src/distance_matrices.cpp            |only
 conleyreg-0.1.5/conleyreg/src/distance_matrices.h              |only
 conleyreg-0.1.5/conleyreg/src/isbalanced.cpp                   |only
 conleyreg-0.1.5/conleyreg/src/lp.cpp                           |only
 conleyreg-0.1.5/conleyreg/src/lp_filling.cpp                   |only
 conleyreg-0.1.5/conleyreg/src/lp_filling.h                     |only
 conleyreg-0.1.5/conleyreg/src/lp_filling_R.cpp                 |only
 conleyreg-0.1.5/conleyreg/src/lp_vcov.cpp                      |only
 conleyreg-0.1.5/conleyreg/src/ols.cpp                          |only
 conleyreg-0.1.5/conleyreg/src/time_dist.cpp                    |only
 conleyreg-0.1.5/conleyreg/vignettes/conleyreg_introduction.Rmd |   93 
 conleyreg-0.1.5/conleyreg/vignettes/matrix_bctimes.png         |binary
 38 files changed, 1798 insertions(+), 988 deletions(-)

More information about conleyreg at CRAN
Permanent link

New package ActivePathways with initial version 1.0.3
Package: ActivePathways
Title: Integrative Pathway Enrichment Analysis of Multivariate Omics Data
Version: 1.0.3
Description: Framework for analysing multiple omics datasets in the context of molecular pathways, biological processes and other types of gene sets. The package uses p-value merging to combine gene- or protein-level signals, followed by ranked hypergeometric tests to determine enriched pathways and processes. This approach allows researchers to interpret a series of omics datasets in the context of known biology and gene function, and discover associations that are only apparent when several datasets are combined. The package is part of the following publication: Integrative Pathway Enrichment Analysis of Multivariate Omics Data. Paczkowska M^, Barenboim J^, Sintupisut N, Fox NS, Zhu H, Abd-Rabbo D, Mee MW, Boutros PC, PCAWG Drivers and Functional Interpretation Working Group; Reimand J, PCAWG Consortium. Nature Communications (2020) <doi:10.1038/s41467-019-13983-9>.
Depends: R (>= 3.6)
Imports: data.table, ggplot2
License: GPL-3
URL:
BugReports: https://github.com/reimandlab/ActivePathways/issues
Encoding: UTF-8
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-11-30 19:48:25 UTC; jreimand
Author: Juri Reimand [aut, cre], Jonathan Barenboim [aut]
Maintainer: Juri Reimand <juri.reimand@utoronto.ca>
Repository: CRAN
Date/Publication: 2021-12-03 12:50:05 UTC

More information about ActivePathways at CRAN
Permanent link

Package RWsearch updated to version 4.9.8 with previous version 4.9.3 dated 2021-06-05

Title: Lazy Search in R Packages, Task Views, CRAN, the Web. All-in-One Download
Description: Search by keywords in R packages, task views, CRAN, the web and display the results in the console or in txt, html or pdf files. Download the package documentation (html index, README, NEWS, pdf manual, vignettes, source code, binaries) with a single instruction. Visualize the package dependencies and CRAN checks. Compare the package versions, unload and install the packages and their dependencies in a safe order. Explore CRAN archives. Use the above functions for task view maintenance. Access web search engines from the console thanks to 80+ bookmarks. All functions accept standard and non-standard evaluation.
Author: Patrice Kiener [aut, cre] (<https://orcid.org/0000-0002-0505-9920>)
Maintainer: Patrice Kiener <rpackages@inmodelia.com>

Diff between RWsearch versions 4.9.3 dated 2021-06-05 and 4.9.8 dated 2021-12-03

 DESCRIPTION                                                |   10 -
 MD5                                                        |   50 ++---
 NAMESPACE                                                  |    2 
 NEWS                                                       |   43 ++++
 R/a_intro.R                                                |   66 +++++-
 R/archivedb.R                                              |   10 -
 R/binarydb.R                                               |only
 R/checkdb.R                                                |   10 -
 R/crandb.R                                                 |   14 +
 R/cranmirrors.R                                            |   15 -
 R/p_archive.R                                              |    4 
 R/p_check.R                                                |    4 
 R/p_down.R                                                 |   34 ---
 R/p_html.R                                                 |    9 
 R/p_vers.R                                                 |  125 +++++++++----
 R/s_sos.R                                                  |   10 -
 R/tvdb.R                                                   |   25 +-
 inst/doc/RWsearch-1-Introduction.html                      |    4 
 inst/doc/RWsearch-2-Display-Download-Documentation.html    |    4 
 inst/doc/RWsearch-3-Package-versions-and-dependencies.html |    4 
 inst/doc/RWsearch-4-Tools-for-taskviews.html               |    4 
 inst/doc/RWsearch-5-Web-search-engines.html                |    4 
 man/RWsearch-package.Rd                                    |    3 
 man/binarydb.Rd                                            |only
 man/p_html.Rd                                              |    5 
 man/p_vers.Rd                                              |   35 ++-
 man/s_sos.Rd                                               |    7 
 27 files changed, 330 insertions(+), 171 deletions(-)

More information about RWsearch at CRAN
Permanent link

Package Rfast updated to version 2.0.4 with previous version 2.0.3 dated 2021-05-17

Title: A Collection of Efficient and Extremely Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column- and row- wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), are some of the many fast functions. References: a) Tsagris M., Papadakis M. (2018). Taking R to its limits: 70+ tips. PeerJ Preprints 6:e26605v1 <doi:10.7287/peerj.preprints.26605v1>. b) Tsagris M. and Papadakis M. (2018). Forward regression in R: from the extreme slow to the extreme fast. Journal of Data Science, 16(4): 771--780. <doi:10.6339/JDS.201810_16(4).00006>.
Author: Manos Papadakis, Michail Tsagris, Marios Dimitriadis, Stefanos Fafalios, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis, John Burkardt, Changliang Zou, Kleanthi Lakiotaki and Christina Chatzipantsiou.
Maintainer: Manos Papadakis <rfastofficial@gmail.com>

Diff between Rfast versions 2.0.3 dated 2021-05-17 and 2.0.4 dated 2021-12-03

 DESCRIPTION                                 |   10 
 MD5                                         |   44 -
 NAMESPACE                                   |   16 
 NEWS.md                                     |  930 +++++++++++-----------------
 R/positive_mle.R                            |    4 
 R/ranef_mle_regressions_repeated_measures.R |    6 
 R/regression_models.R                       |   21 
 R/score_tests.R                             |    8 
 R/sum.R                                     |    8 
 R/variable_selection.R                      |  191 +++--
 inst/include/Rfast/templates.h              |  117 +++
 man/Outer.Rd                                |    6 
 man/Rfast-package.Rd                        |    4 
 man/colrint.regbx.Rd                        |    1 
 man/colsums.Rd                              |    7 
 man/dista.Rd                                |   13 
 man/ompr.Rd                                 |    2 
 man/score.glms.Rd                           |   22 
 man/weib.reg.Rd                             |    1 
 src/Rank.cpp                                |    6 
 src/col_row_utilities.cpp                   |   86 +-
 src/dists.cpp                               |    4 
 src/init.c                                  |    8 
 23 files changed, 773 insertions(+), 742 deletions(-)

More information about Rfast at CRAN
Permanent link

Package admisc updated to version 0.21 with previous version 0.20 dated 2021-11-14

Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'declared', 'DDIwR', 'mixed', 'QCA' and 'venn'. Interprets and translates, factorizes and negates SOP - Sum of Products expressions, for both binary and multi-value crisp sets, and extracts information (set names, set values) from those expressions. Other functions perform various other checks if possibly numeric (even if all numbers reside in a character vector) and coerce to numeric, or check if the numbers are whole. It also offers, among many others, a highly flexible recoding routine.
Author: Adrian Dusa [aut, cre, cph] (<https://orcid.org/0000-0002-3525-9253>)
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>

Diff between admisc versions 0.20 dated 2021-11-14 and 0.21 dated 2021-12-03

 DESCRIPTION           |    8 ++++----
 MD5                   |   12 ++++++------
 R/negate.R            |    2 +-
 build/partial.rdb     |binary
 inst/ChangeLog        |    4 ++++
 man/admisc.package.Rd |    4 ++--
 src/admisc.c          |    1 -
 7 files changed, 17 insertions(+), 14 deletions(-)

More information about admisc at CRAN
Permanent link

Package sjmisc updated to version 2.8.9 with previous version 2.8.7 dated 2021-05-12

Title: Data and Variable Transformation Functions
Description: Collection of miscellaneous utility functions, supporting data transformation tasks like recoding, dichotomizing or grouping variables, setting and replacing missing values. The data transformation functions also support labelled data, and all integrate seamlessly into a 'tidyverse'-workflow.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>), Iago Giné-Vázquez [ctb], Alexander Bartel [ctb] (<https://orcid.org/0000-0002-1280-6138>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>

Diff between sjmisc versions 2.8.7 dated 2021-05-12 and 2.8.9 dated 2021-12-03

 sjmisc-2.8.7/sjmisc/R/format.R                              |only
 sjmisc-2.8.9/sjmisc/DESCRIPTION                             |   12 
 sjmisc-2.8.9/sjmisc/MD5                                     |  109 +-
 sjmisc-2.8.9/sjmisc/NAMESPACE                               |    7 
 sjmisc-2.8.9/sjmisc/NEWS.md                                 |   14 
 sjmisc-2.8.9/sjmisc/R/S3-methods.R                          |  134 ++
 sjmisc-2.8.9/sjmisc/R/frq.R                                 |    3 
 sjmisc-2.8.9/sjmisc/R/rec.R                                 |   74 +
 sjmisc-2.8.9/sjmisc/R/remove_vars.R                         |    2 
 sjmisc-2.8.9/sjmisc/build/partial.rdb                       |binary
 sjmisc-2.8.9/sjmisc/build/vignette.rds                      |binary
 sjmisc-2.8.9/sjmisc/inst/doc/design_philosophy.html         |    4 
 sjmisc-2.8.9/sjmisc/inst/doc/exploringdatasets.html         |  124 +-
 sjmisc-2.8.9/sjmisc/inst/doc/recodingvariables.html         |  587 +++++-------
 sjmisc-2.8.9/sjmisc/man/add_rows.Rd                         |  114 +-
 sjmisc-2.8.9/sjmisc/man/add_variables.Rd                    |  116 +-
 sjmisc-2.8.9/sjmisc/man/all_na.Rd                           |   54 -
 sjmisc-2.8.9/sjmisc/man/big_mark.Rd                         |  100 +-
 sjmisc-2.8.9/sjmisc/man/count_na.Rd                         |  114 +-
 sjmisc-2.8.9/sjmisc/man/de_mean.Rd                          |  130 +-
 sjmisc-2.8.9/sjmisc/man/dicho.Rd                            |  298 +++---
 sjmisc-2.8.9/sjmisc/man/flat_table.Rd                       |  158 +--
 sjmisc-2.8.9/sjmisc/man/frq.Rd                              |  395 ++++----
 sjmisc-2.8.9/sjmisc/man/group_str.Rd                        |  152 +--
 sjmisc-2.8.9/sjmisc/man/group_var.Rd                        |  346 +++----
 sjmisc-2.8.9/sjmisc/man/has_na.Rd                           |  158 +--
 sjmisc-2.8.9/sjmisc/man/is_crossed.Rd                       |  172 +--
 sjmisc-2.8.9/sjmisc/man/is_empty.Rd                         |  132 +-
 sjmisc-2.8.9/sjmisc/man/move_columns.Rd                     |  148 +--
 sjmisc-2.8.9/sjmisc/man/numeric_to_factor.Rd                |   68 -
 sjmisc-2.8.9/sjmisc/man/rec.Rd                              |  460 ++++-----
 sjmisc-2.8.9/sjmisc/man/recode_to.Rd                        |  210 ++--
 sjmisc-2.8.9/sjmisc/man/reexports.Rd                        |    6 
 sjmisc-2.8.9/sjmisc/man/ref_lvl.Rd                          |  158 +--
 sjmisc-2.8.9/sjmisc/man/remove_var.Rd                       |   64 -
 sjmisc-2.8.9/sjmisc/man/replace_na.Rd                       |  212 ++--
 sjmisc-2.8.9/sjmisc/man/reshape_longer.Rd                   |  224 ++--
 sjmisc-2.8.9/sjmisc/man/rotate_df.Rd                        |  114 +-
 sjmisc-2.8.9/sjmisc/man/row_count.Rd                        |  136 +-
 sjmisc-2.8.9/sjmisc/man/row_sums.Rd                         |  214 ++--
 sjmisc-2.8.9/sjmisc/man/set_na_if.Rd                        |  116 +-
 sjmisc-2.8.9/sjmisc/man/split_var.Rd                        |  308 +++---
 sjmisc-2.8.9/sjmisc/man/spread_coef.Rd                      |  216 ++--
 sjmisc-2.8.9/sjmisc/man/std.Rd                              |  298 +++---
 sjmisc-2.8.9/sjmisc/man/str_contains.Rd                     |  162 +--
 sjmisc-2.8.9/sjmisc/man/str_find.Rd                         |  172 +--
 sjmisc-2.8.9/sjmisc/man/str_start.Rd                        |  128 +-
 sjmisc-2.8.9/sjmisc/man/tidy_values.Rd                      |   78 -
 sjmisc-2.8.9/sjmisc/man/to_dummy.Rd                         |  118 +-
 sjmisc-2.8.9/sjmisc/man/to_value.Rd                         |  114 +-
 sjmisc-2.8.9/sjmisc/man/var_rename.Rd                       |  108 +-
 sjmisc-2.8.9/sjmisc/man/var_type.Rd                         |   88 -
 sjmisc-2.8.9/sjmisc/man/word_wrap.Rd                        |   64 -
 sjmisc-2.8.9/sjmisc/man/zap_inf.Rd                          |   96 -
 sjmisc-2.8.9/sjmisc/tests/testthat/test-merge_imputations.R |    2 
 sjmisc-2.8.9/sjmisc/tests/testthat/test-rec.R               |    2 
 56 files changed, 3894 insertions(+), 3699 deletions(-)

More information about sjmisc at CRAN
Permanent link

Package sdcTable updated to version 0.32.2 with previous version 0.32.1 dated 2021-09-30

Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in tabular data such as primary and secondary cell suppression as described for example in Hundepol et al. (2012) <doi:10.1002/9781118348239> are covered in this package.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl <bernhard.meindl@gmail.com>

Diff between sdcTable versions 0.32.1 dated 2021-09-30 and 0.32.2 dated 2021-12-03

 sdcTable-0.32.1/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_c97b033f24ad7e223cc0cc29e69a737f.RData |only
 sdcTable-0.32.1/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_c97b033f24ad7e223cc0cc29e69a737f.rdb   |only
 sdcTable-0.32.1/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_c97b033f24ad7e223cc0cc29e69a737f.rdx   |only
 sdcTable-0.32.2/sdcTable/DESCRIPTION                                                                           |   10 +--
 sdcTable-0.32.2/sdcTable/MD5                                                                                   |   30 ++++-----
 sdcTable-0.32.2/sdcTable/R/change_cellstatus.R                                                                 |    2 
 sdcTable-0.32.2/sdcTable/R/methods_class_sdcProblem.r                                                          |   23 ++++---
 sdcTable-0.32.2/sdcTable/R/primarySuppression.R                                                                |    7 +-
 sdcTable-0.32.2/sdcTable/R/protect_linked_tables.R                                                             |   10 +--
 sdcTable-0.32.2/sdcTable/R/utils.R                                                                             |   31 +++-------
 sdcTable-0.32.2/sdcTable/R/utils_simpleheuristic.R                                                             |   10 ++-
 sdcTable-0.32.2/sdcTable/build/vignette.rds                                                                    |binary
 sdcTable-0.32.2/sdcTable/inst/doc/sdcTable.html                                                                |   15 +---
 sdcTable-0.32.2/sdcTable/man/change_cellstatus.Rd                                                              |    2 
 sdcTable-0.32.2/sdcTable/man/primarySuppression.Rd                                                             |    7 +-
 sdcTable-0.32.2/sdcTable/man/protect_linked_tables.Rd                                                          |   10 +--
 sdcTable-0.32.2/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_98c4c32852884932d756c9b1fe94ca7b.RData |only
 sdcTable-0.32.2/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_98c4c32852884932d756c9b1fe94ca7b.rdb   |only
 sdcTable-0.32.2/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_98c4c32852884932d756c9b1fe94ca7b.rdx   |only
 19 files changed, 75 insertions(+), 82 deletions(-)

More information about sdcTable at CRAN
Permanent link

Package meta updated to version 5.1-1 with previous version 5.1-0 dated 2021-11-17

Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015): - fixed effect and random effects meta-analysis; - several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble); - statistical tests and trim-and-fill method to evaluate bias in meta-analysis; - import data from 'RevMan 5'; - prediction interval, Hartung-Knapp method for random effects model; - cumulative meta-analysis and leave-one-out meta-analysis; - meta-regression; - generalised linear mixed models; - produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut] (<https://orcid.org/0000-0001-6214-9087>)
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>

Diff between meta versions 5.1-0 dated 2021-11-17 and 5.1-1 dated 2021-12-03

 DESCRIPTION            |    8 +-
 MD5                    |   20 ++---
 NEWS.md                |   33 ++++++++
 R/ci.R                 |    7 -
 R/meta-ci.R            |  183 ++++++++++++++++++++++++++++++++++++-------------
 R/meta-internal.R      |   49 +++++++++++++
 R/metacont.R           |   38 ++++++----
 R/metamean.R           |    4 -
 R/metaprop.R           |   64 ++++++-----------
 R/print.meta.R         |   42 -----------
 R/print.summary.meta.R |   51 ++++++++++++-
 11 files changed, 333 insertions(+), 166 deletions(-)

More information about meta at CRAN
Permanent link

Package AgroR updated to version 1.2.5 with previous version 1.2.4 dated 2021-11-30

Title: Experimental Statistics and Graphics for Agricultural Sciences
Description: Performs the analysis of completely randomized experimental designs (CRD), randomized blocks (RBD) and Latin square (LSD), experiments in double and triple factorial scheme (in CRD and RBD), experiments in subdivided plot scheme (in CRD and RBD), subdivided and joint analysis of experiments in CRD and RBD, linear regression analysis, test for two samples. The package performs analysis of variance, ANOVA assumptions and multiple comparison test of means or regression, according to Pimentel-Gomes (2009, ISBN: 978-85-7133-055-9), nonparametric test (Conover, 1999, ISBN: 0471160687), test for two samples, joint analysis of experiments according to Ferreira (2018, ISBN: 978-85-7269-566-4), ANOVA of aligned ranks (Wobbrock, J.O., Findlater, L., Gergle, D., Higgins, JJ (2011), <doi:10.1145/1978942.1978963>) and generalized linear model (glm) for binomial and Poisson family in CRD and RBD (Carvalho, FJ (2019), <doi:10.14393/ufu.te.2019.1244>). It can also be used to obtain descriptive measures and graphics, in addition to correlations and creative graphics used in agricultural sciences (Agronomy, Zootechnics, Food Science and related areas).
Author: Gabriel Danilo Shimizu [aut, cre] (<https://orcid.org/0000-0001-8524-508X>), Rodrigo Yudi Palhaci Marubayashi [aut, ctb] (<https://orcid.org/0000-0003-2778-8654>), Leandro Simoes Azeredo Goncalves [aut, ctb] (<https://orcid.org/0000-0001-9700-9375>)
Maintainer: Gabriel Danilo Shimizu <shimizu@uel.br>

Diff between AgroR versions 1.2.4 dated 2021-11-30 and 1.2.5 dated 2021-12-03

 AgroR-1.2.4/AgroR/R/FAT2DBCart_function.R       |only
 AgroR-1.2.4/AgroR/R/FAT2DICart_function.R       |only
 AgroR-1.2.4/AgroR/man/FAT2DBC.art.Rd            |only
 AgroR-1.2.4/AgroR/man/FAT2DIC.art.Rd            |only
 AgroR-1.2.5/AgroR/DESCRIPTION                   |   14 
 AgroR-1.2.5/AgroR/MD5                           |  130 ++++----
 AgroR-1.2.5/AgroR/NAMESPACE                     |   11 
 AgroR-1.2.5/AgroR/NEWS.md                       |    8 
 AgroR-1.2.5/AgroR/R/DBCglm_function.R           |   26 -
 AgroR-1.2.5/AgroR/R/DICglm_function.R           |   29 +
 AgroR-1.2.5/AgroR/R/FAT2DBC_function.R          |  178 ++++++++---
 AgroR-1.2.5/AgroR/R/FAT2DBCad_function.R        |   58 ++-
 AgroR-1.2.5/AgroR/R/FAT2DIC_function.R          |  123 ++++++--
 AgroR-1.2.5/AgroR/R/FAT2DICad_function.R        |   60 ++-
 AgroR-1.2.5/AgroR/R/FAT3DBC_function.R          |  334 +++++++++++++++-------
 AgroR-1.2.5/AgroR/R/FAT3DIC_function.R          |  287 ++++++++++++++-----
 AgroR-1.2.5/AgroR/R/PSUBDBC_function.R          |  143 +++++++--
 AgroR-1.2.5/AgroR/R/PSUBDIC_function.R          |  160 ++++++++--
 AgroR-1.2.5/AgroR/R/PSUBFAT2DBC_function.R      |only
 AgroR-1.2.5/AgroR/R/PSUBSUB_function.R          |  361 +++++++++++++++++-------
 AgroR-1.2.5/AgroR/R/auxiliar_function.R         |   65 ++++
 AgroR-1.2.5/AgroR/R/bean_dataset.R              |    2 
 AgroR-1.2.5/AgroR/R/conjdbc_function.R          |   51 +--
 AgroR-1.2.5/AgroR/R/conjdic_function.R          |   44 +-
 AgroR-1.2.5/AgroR/R/coric_function.R            |    2 
 AgroR-1.2.5/AgroR/R/corn_dataset.R              |    2 
 AgroR-1.2.5/AgroR/R/correlation_function.R      |   24 +
 AgroR-1.2.5/AgroR/R/covercrops_dataset.R        |    2 
 AgroR-1.2.5/AgroR/R/dbc_function.R              |   74 ++--
 AgroR-1.2.5/AgroR/R/dbct_function.R             |   32 +-
 AgroR-1.2.5/AgroR/R/dic_function.R              |  351 ++---------------------
 AgroR-1.2.5/AgroR/R/dict_function.R             |   26 +
 AgroR-1.2.5/AgroR/R/dispvar_function.R          |    1 
 AgroR-1.2.5/AgroR/R/dql_function.R              |   48 +--
 AgroR-1.2.5/AgroR/R/dqlt_function.R             |   38 +-
 AgroR-1.2.5/AgroR/R/orchard_dataset.R           |    2 
 AgroR-1.2.5/AgroR/R/pepper_dataset.R            |    2 
 AgroR-1.2.5/AgroR/R/plotcor_function.R          |    4 
 AgroR-1.2.5/AgroR/R/polynomial2_function.R      |   53 +++
 AgroR-1.2.5/AgroR/R/polynomial2color_function.R |   55 +++
 AgroR-1.2.5/AgroR/R/polynomial_function.R       |   72 +++-
 AgroR-1.2.5/AgroR/R/test_two_function.R         |   13 
 AgroR-1.2.5/AgroR/man/DBC.Rd                    |   24 -
 AgroR-1.2.5/AgroR/man/DBC.glm.Rd                |    3 
 AgroR-1.2.5/AgroR/man/DBCT.Rd                   |   19 -
 AgroR-1.2.5/AgroR/man/DIC.Rd                    |   28 +
 AgroR-1.2.5/AgroR/man/DIC.glm.Rd                |    5 
 AgroR-1.2.5/AgroR/man/DICT.Rd                   |    7 
 AgroR-1.2.5/AgroR/man/DQL.Rd                    |   16 -
 AgroR-1.2.5/AgroR/man/DQLT.Rd                   |    9 
 AgroR-1.2.5/AgroR/man/FAT2DBC.Rd                |   23 -
 AgroR-1.2.5/AgroR/man/FAT2DBC.ad.Rd             |   11 
 AgroR-1.2.5/AgroR/man/FAT2DIC.Rd                |   13 
 AgroR-1.2.5/AgroR/man/FAT2DIC.ad.Rd             |   12 
 AgroR-1.2.5/AgroR/man/FAT3DBC.Rd                |   27 -
 AgroR-1.2.5/AgroR/man/FAT3DIC.Rd                |   31 +-
 AgroR-1.2.5/AgroR/man/PSUBDBC.Rd                |    9 
 AgroR-1.2.5/AgroR/man/PSUBDIC.Rd                |   13 
 AgroR-1.2.5/AgroR/man/PSUBFAT2DBC.Rd            |only
 AgroR-1.2.5/AgroR/man/bean.Rd                   |    2 
 AgroR-1.2.5/AgroR/man/cor_ic.Rd                 |    2 
 AgroR-1.2.5/AgroR/man/corn.Rd                   |    2 
 AgroR-1.2.5/AgroR/man/covercrops.Rd             |    2 
 AgroR-1.2.5/AgroR/man/orchard.Rd                |    2 
 AgroR-1.2.5/AgroR/man/pepper.Rd                 |    2 
 AgroR-1.2.5/AgroR/man/polynomial.Rd             |    8 
 AgroR-1.2.5/AgroR/man/polynomial2.Rd            |    8 
 AgroR-1.2.5/AgroR/man/polynomial2_color.Rd      |    8 
 AgroR-1.2.5/AgroR/man/test_two.Rd               |    8 
 69 files changed, 2029 insertions(+), 1150 deletions(-)

More information about AgroR at CRAN
Permanent link

Package pkgdown updated to version 2.0.1 with previous version 2.0.0 dated 2021-11-30

Title: Make Static HTML Documentation for a Package
Description: Generate an attractive and useful website from a source package. 'pkgdown' converts your documentation, vignettes, 'README', and more to 'HTML' making it easy to share information about your package online.
Author: Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>), Jay Hesselberth [aut] (<https://orcid.org/0000-0002-6299-179X>), Maëlle Salmon [aut] (<https://orcid.org/0000-0002-2815-0399>), RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between pkgdown versions 2.0.0 dated 2021-11-30 and 2.0.1 dated 2021-12-03

 DESCRIPTION                                     |    6 +-
 MD5                                             |   49 ++++++++++++------------
 NEWS.md                                         |   11 +++++
 R/build-reference-index.R                       |    9 ++--
 R/build-reference.R                             |   11 +++--
 R/markdown.R                                    |    6 ++
 R/rd-data.R                                     |    4 +
 R/topics.R                                      |    4 -
 R/utils.R                                       |    4 -
 build/pkgdown.pdf                               |binary
 inst/BS3/templates/content-reference-topic.html |    4 +
 man/build_home.Rd                               |    2 
 man/build_site.Rd                               |    2 
 tests/testthat/_snaps/build-footer.md           |   15 ++-----
 tests/testthat/_snaps/build-reference-index.md  |   12 +++++
 tests/testthat/_snaps/render.md                 |    2 
 tests/testthat/assets/reference/DESCRIPTION     |    2 
 tests/testthat/assets/reference/R/funs.R        |    4 +
 tests/testthat/assets/reference/man/e.Rd        |only
 tests/testthat/test-build-articles.R            |    7 +++
 tests/testthat/test-build-footer.R              |    5 +-
 tests/testthat/test-build-reference-index.R     |   12 ++---
 tests/testthat/test-build-reference.R           |   37 ++++++++++++++++++
 tests/testthat/test-rd-data.R                   |    4 +
 tests/testthat/test-render.R                    |    1 
 tests/testthat/test-tweak-reference.R           |    1 
 26 files changed, 151 insertions(+), 63 deletions(-)

More information about pkgdown at CRAN
Permanent link

Package gplsim updated to version 0.9.1 with previous version 0.9.0 dated 2021-12-02

Title: Penalized Spline Estimation for GPLSIM
Description: We provides functions that employ penalized spline (P-spline) to estimate generalized partially linear single index models (GPLSIM), which extend the generalized linear models to include nonlinear effect for some predictors. Please see Y. (2017) at <doi:10.1007/s11222-016-9639-0> and Y., and R. (2002) at <doi:10.1198/016214502388618861> for more details.
Author: Tianhai Zu [aut, trl, cre], Yan Yu [aut]
Maintainer: Tianhai Zu <zuti@mail.uc.edu>

Diff between gplsim versions 0.9.0 dated 2021-12-02 and 0.9.1 dated 2021-12-03

 gplsim-0.9.0/gplsim/man/plot.si.Rd       |only
 gplsim-0.9.1/gplsim/DESCRIPTION          |    6 +++---
 gplsim-0.9.1/gplsim/MD5                  |   16 ++++++++--------
 gplsim-0.9.1/gplsim/NAMESPACE            |    7 ++++---
 gplsim-0.9.1/gplsim/NEWS.md              |    2 +-
 gplsim-0.9.1/gplsim/R/gplsim.r           |   30 +++++++++++++++++-------------
 gplsim-0.9.1/gplsim/README.md            |    8 +++-----
 gplsim-0.9.1/gplsim/man/add_sim_bound.Rd |    8 +++++++-
 gplsim-0.9.1/gplsim/man/gplsim.Rd        |    2 +-
 gplsim-0.9.1/gplsim/man/plot_si.Rd       |only
 10 files changed, 44 insertions(+), 35 deletions(-)

More information about gplsim at CRAN
Permanent link

Package gdalcubes updated to version 0.5.1 with previous version 0.5.0 dated 2021-10-28

Title: Earth Observation Data Cubes from Satellite Image Collections
Description: Processing collections of Earth observation images as on-demand multispectral, multitemporal raster data cubes. Users define cubes by spatiotemporal extent, resolution, and spatial reference system and let 'gdalcubes' automatically apply cropping, reprojection, and resampling using the 'Geospatial Data Abstraction Library' ('GDAL'). Implemented functions on data cubes include reduction over space and time, applying arithmetic expressions on pixel band values, moving window aggregates over time, filtering by space, time, bands, and predicates on pixel values, exporting data cubes as 'netCDF' or 'GeoTIFF' files, and plotting. The package implements lazy evaluation and multithreading. All computational parts are implemented in C++, linking to the 'GDAL', 'netCDF', 'CURL', and 'SQLite' libraries. See Appel and Pebesma (2019) <doi:10.3390/data4030092> for further details.
Author: Marius Appel [aut, cre] (<https://orcid.org/0000-0001-5281-3896>), Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>), Roger Bivand [ctb], Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>), Lewis Van Winkle [cph], Ole Christian Eidheim [cph], Howard Hinnant [cph], Adrian Colomitchi [cph], Florian Dang [cph], Paul Thompson [cph], Tomasz Kamiński [cph], Dropbox, Inc. [cph]
Maintainer: Marius Appel <marius.appel@uni-muenster.de>

Diff between gdalcubes versions 0.5.0 dated 2021-10-28 and 0.5.1 dated 2021-12-03

 DESCRIPTION                  |   10 +++++-----
 MD5                          |   36 ++++++++++++++++++------------------
 NEWS.md                      |    5 +++++
 R/aggregate_time.R           |    2 +-
 R/crop.R                     |    2 +-
 R/cube.R                     |    4 ++--
 R/stac.R                     |   17 +++++++++--------
 build/vignette.rds           |binary
 configure                    |   18 +++++++++---------
 configure.ac                 |    2 +-
 inst/doc/MODIS.R             |    4 ++--
 inst/doc/MODIS.Rmd           |    9 ++++-----
 inst/doc/MODIS.html          |   32 ++++++++++++++++----------------
 man/aggregate_time.Rd        |    2 +-
 man/crop.Rd                  |    2 +-
 man/stack_cube.Rd            |    9 ++-------
 src/gdalcubes.cpp            |    2 +-
 src/gdalcubes/src/config.cpp |    1 +
 vignettes/MODIS.Rmd          |    9 ++++-----
 19 files changed, 83 insertions(+), 83 deletions(-)

More information about gdalcubes at CRAN
Permanent link

New package SNPassoc with initial version 2.0-11
Package: SNPassoc
Version: 2.0-11
Date: 2021-11-15
Depends: R (>= 4.0.0)
Imports: haplo.stats, mvtnorm, parallel, survival, tidyr, plyr, ggplot2, BiocStyle, poisbinom, Biostrings, VariantAnnotation, TxDb.Hsapiens.UCSC.hg19.knownGene, GenomicRanges, IRanges, S4Vectors, org.Hs.eg.db
Suggests: testthat, knitr, rmarkdown, biomaRt, SNPlocs.Hsapiens.dbSNP144.GRCh38, MafDb.1Kgenomes.phase3.GRCh38, BSgenome.Hsapiens.NCBI.GRCh38, GenomicScores, BSgenome
Title: SNPs-Based Whole Genome Association Studies
Description: Functions to perform most of the common analysis in genome association studies are implemented. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented. Max-statistic and genetic risk-allele score exact distributions are also possible to be estimated. The methods are described in Gonzalez JR et al., 2007 <doi: 10.1093/bioinformatics/btm025>.
URL: https://github.com/isglobal-brge/SNPassoc
License: GPL (>= 2)
Encoding: UTF-8
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-12-02 14:45:01 UTC; mailos
Author: Victor Moreno [aut], Juan R Gonzalez [aut, cre]
Maintainer: Juan R Gonzalez <juanr.gonzalez@isglobal.org>
Repository: CRAN
Date/Publication: 2021-12-03 08:40:02 UTC

More information about SNPassoc at CRAN
Permanent link

New package RCzechia with initial version 1.9.1
Package: RCzechia
Title: Spatial Objects of the Czech Republic
Version: 1.9.1
Date: 2021-12-02
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Description: Administrative regions and other spatial objects of the Czech Republic.
URL: https://github.com/jlacko/RCzechia
BugReports: https://github.com/jlacko/RCzechia/issues
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 3.3.0), sf
Imports: curl, httr, jsonlite, magrittr
Suggests: raster, readxl, units, ggplot2, stringr, rvest, xml2, scales, knitr, testthat, roxygen2, devtools, rmarkdown, dplyr, lwgeom, s2, covr
SystemRequirements: GDAL (>= 2.2.3), GEOS (>= 3.6.2), PROJ (>= 4.9.3)
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-12-02 15:25:57 UTC; jindra
Repository: CRAN
Date/Publication: 2021-12-03 08:40:06 UTC

More information about RCzechia at CRAN
Permanent link

New package litRiddle with initial version 0.4.1
Package: litRiddle
Title: Dataset and Tools to Research the Riddle of Literary Quality
Version: 0.4.1
Date: 2021-12-2
Author: Maciej Eder [aut, cre], Karina van Dalen-Oskam [aut], Joris van Zundert [aut], Saskia Lensink [aut]
Maintainer: Maciej Eder <maciejeder@gmail.com>
URL: https://literaryquality.huygens.knaw.nl/
Depends: R (>= 3.5.0)
Imports: dplyr, ggplot2
Suggests: stylo, knitr, rmarkdown
Description: Dataset and functions to explore quality of literary novels. The package is a part of the Riddle of Literary Quality project, and it contains the data of a reader survey about fiction in Dutch, a description of the novels the readers rated, and the results of stylistic measurements of the novels. The package also contains functions to combine, analyze, and visualize these data.
License: GPL (>= 3)
Encoding: UTF-8
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-12-02 17:46:25 UTC; m
Repository: CRAN
Date/Publication: 2021-12-03 09:00:02 UTC

More information about litRiddle at CRAN
Permanent link

New package lactater with initial version 0.1.0
Package: lactater
Title: Tools for Analyzing Lactate Thresholds
Version: 0.1.0
Description: Set of tools for analyzing lactate thresholds from a step incremental test to exhaustion. Easily analyze the methods Log-log, Onset of Blood Lactate Accumulation (OBLA), Baseline plus (Bsln+), Dmax, Lactate Turning Point (LTP), and Lactate / Intensity ratio (LTratio) in cycling, running, or swimming. Beaver WL, Wasserman K, Whipp BJ (1985) <doi:10.1152/jappl.1985.59.6.1936>. Heck H, Mader A, Hess G, Mücke S, Müller R, Hollmann W (1985) <doi:10.1055/s-2008-1025824>. Kindermann W, Simon G, Keul J (1979) <doi:10.1007/BF00421101>. Skinner JS, Mclellan TH (1980) <doi:10.1080/02701367.1980.10609285>. Berg A, Jakob E, Lehmann M, Dickhuth HH, Huber G, Keul J (1990) <PMID:2408033>. Zoladz JA, Rademaker AC, Sargeant AJ (1995) <doi:10.1113/jphysiol.1995.sp020959>. Cheng B, Kuipers H, Snyder A, Keizer H, Jeukendrup A, Hesselink M (1992) <doi:10.1055/s-2007-1021309>. Bishop D, Jenkins DG, Mackinnon LT (1998) <doi:10.1097/00005768-199808000-00014>. Hughson RL, Weisiger KH, Swanson GD (1987) <doi:10.1152/jappl.1987.62.5.1975>. Jamnick NA, Botella J, Pyne DB, Bishop DJ (2018) <doi:10.1371/journal.pone.0199794>. Hofmann P, Tschakert G (2017) <doi:10.3389/fphys.2017.00337>. Hofmann P, Pokan R, von Duvillard SP, Seibert FJ, Zweiker R, Schmid P (1997) <doi:10.1097/00005768-199706000-00005>. Pokan R, Hofmann P, Von Duvillard SP, et al. (1997) <doi:10.1097/00005768-199708000-00009>. Dickhuth H-H, Yin L, Niess A, et al. (1999) <doi:10.1055/s-2007-971105>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Suggests: bsplus, covr, datapasta, glue, knitr, miniUI, rhandsontable, rmarkdown, shiny, shinyjs, shinyWidgets, spelling, testthat (>= 3.0.0)
Imports: magrittr, broom, dplyr, ggplot2, ggtext, patchwork, lubridate, minpack.lm, pracma, rlang, segmented, stringr, tidyr, forcats
Depends: R (>= 2.10)
Language: en-US
NeedsCompilation: no
Packaged: 2021-12-02 14:40:49 UTC; fmattioni
Author: Felipe Mattioni Maturana [aut, cre] (<https://orcid.org/0000-0002-4221-6104>)
Maintainer: Felipe Mattioni Maturana <felipe.mattioni@med.uni-tuebingen.de>
Repository: CRAN
Date/Publication: 2021-12-03 08:30:02 UTC

More information about lactater at CRAN
Permanent link

New package kfa with initial version 0.1.0
Package: kfa
Title: K-Fold Cross Validation for Factor Analysis
Version: 0.1.0
Author: Kyle Nickodem [aut, cre] and Peter Halpin [aut]
Maintainer: Kyle Nickodem <kyle.nickodem@gmail.com>
Description: Provides functions to explore possible factor structures for a set of variables and helps identify plausible and replicable structures via *k*-fold cross validation. The process combines the exploratory and confirmatory factor analytic approach to scale development (Flora & Flake, 2017) <doi:10.1037/cbs0000069> with a cross validation technique that maximizes the available data. Also available are functions to determine *k* by drawing on power analytic techniques for covariance structures (MacCallum, Browne, & Sugawara, 1996) <doi:10.1037/1082-989X.1.2.130>, generate model syntax, and summarize results in a report.
Depends: R (>= 3.6)
Imports: caret, doParallel, flextable (>= 0.6.3), foreach, GPArotation, knitr, lavaan (>= 0.6.9), officer, parallel, rmarkdown, semPlot, semTools (>= 0.5.5), simstandard
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
URL: <https://github.com/knickodem/kfa>
BugReports: https://github.com/knickodem/kfa/issues
NeedsCompilation: no
Packaged: 2021-12-01 19:15:24 UTC; kylenick
Repository: CRAN
Date/Publication: 2021-12-03 08:20:02 UTC

More information about kfa at CRAN
Permanent link

New package jagstargets with initial version 1.0.1
Package: jagstargets
Title: Targets for JAGS Workflows
Description: Bayesian data analysis usually incurs long runtimes and cumbersome custom code. A pipeline toolkit tailored to Bayesian statisticians, the 'jagstargets' R package is leverages 'targets' and 'R2jags' to ease this burden. 'jagstargets' makes it super easy to set up scalable JAGS pipelines that automatically parallelize the computation and skip expensive steps when the results are already up to date. Minimal custom code is required, and there is no need to manually configure branching, so usage is much easier than 'targets' alone. For the underlying methodology, please refer to the documentation of 'targets' <doi:10.21105/joss.02959> and 'JAGS' (Plummer 2003) <https://www.r-project.org/conferences/DSC-2003/Proceedings/Plummer.pdf>.
Version: 1.0.1
License: MIT + file LICENSE
URL: https://docs.ropensci.org/jagstargets/, https://github.com/ropensci/jagstargets
BugReports: https://github.com/ropensci/jagstargets/issues
Depends: R (>= 3.5.0)
Imports: coda (>= 0.19.4), digest (>= 0.6.25), fst (>= 0.9.2), posterior (>= 1.0.1), purrr (>= 0.3.4), qs (>= 0.23.2), R2jags (>= 0.6.1), rjags (>= 4.10), rlang (>= 0.4.10), stats, targets (>= 0.6.0), tarchetypes (>= 0.0.1), tibble (>= 3.0.1), tools, utils, withr (>= 2.1.2),
Suggests: dplyr (>= 1.0.2), fs (>= 1.5.0), knitr (>= 1.30), R.utils (>= 2.10.1), rmarkdown (>= 2.3), testthat (>= 3.0.0), tidyr (>= 1.1.2), visNetwork (>= 2.0.9)
SystemRequirements: JAGS 4.x.y (https://mcmc-jags.sourceforge.net)
Encoding: UTF-8
Language: en-US
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-12-01 12:13:40 UTC; c240390
Author: William Michael Landau [aut, cre] (<https://orcid.org/0000-0003-1878-3253>), David Lawrence Miller [rev], Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Repository: CRAN
Date/Publication: 2021-12-03 08:10:02 UTC

More information about jagstargets at CRAN
Permanent link

New package index0 with initial version 0.0.1
Package: index0
Title: Zero-Based Indexing in R
Version: 0.0.1
Description: Extract and replace elements using indices that start from zero (rather than one), as is common in mathematical notation and other programming languages.
License: MIT + file LICENSE
Language: en-GB
Encoding: UTF-8
Suggests: testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2021-12-02 10:49:54 UTC; David
Author: David Antony Selby [aut, cre] (<https://orcid.org/0000-0001-8026-5663>)
Maintainer: David Antony Selby <david.selby@manchester.ac.uk>
Repository: CRAN
Date/Publication: 2021-12-03 08:20:05 UTC

More information about index0 at CRAN
Permanent link

New package FPLdata with initial version 0.1.0
Package: FPLdata
Title: Read in Fantasy Premier League Data
Version: 0.1.0
Maintainer: Andrew Little <andrewlittlebristol@gmail.com>
Description: This data contains a large variety of information on players and their current attributes on Fantasy Premier League <https://fantasy.premierleague.com/>. In particular, it contains a `next_gw_points` (next gameweek points) value for each player given their attributes in the current week. Rows represent player-gameweeks, i.e. for each player there is a row for each gameweek. This makes the data suitable for modelling a player's next gameweek points, given attributes such as form, total points, and cost at the current gameweek. This data can therefore be used to create Fantasy Premier League bots that may use a machine learning algorithm and a linear programming solver (for example) to return the best possible transfers and team to pick for each gameweek, thereby fully automating the decision making process in Fantasy Premier League. This function simply supplies the required data for such a task.
Imports: readr, dplyr
License: MIT + file LICENSE
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2021-12-02 14:08:50 UTC; andrew.little
Author: Andrew Little [aut, cre]
Repository: CRAN
Date/Publication: 2021-12-03 08:30:05 UTC

More information about FPLdata at CRAN
Permanent link

Package portalr updated to version 0.3.9 with previous version 0.3.8 dated 2021-05-23

Title: Create Useful Summaries of the Portal Data
Description: Download and generate summaries for the rodent, plant, ant, and weather data from the Portal Project. Portal is a long-term (and ongoing) experimental monitoring site in the Chihuahua desert. The raw data files can be found at <https://github.com/weecology/portaldata>.
Author: Glenda M. Yenni [aut, cre] (<https://orcid.org/0000-0001-6969-1848>), Hao Ye [aut] (<https://orcid.org/0000-0002-8630-1458>), Erica M. Christensen [aut] (<https://orcid.org/0000-0002-5635-2502>), Juniper L. Simonis [aut] (<https://orcid.org/0000-0001-9798-0460>), Ellen K. Bledsoe [aut] (<https://orcid.org/0000-0002-3629-7235>), Renata M. Diaz [aut] (<https://orcid.org/0000-0003-0803-4734>), Shawn D. Taylor [aut] (<https://orcid.org/0000-0002-6178-6903>), Ethan P, White [aut] (<https://orcid.org/0000-0001-6728-7745>), S.K. Morgan Ernest [aut] (<https://orcid.org/0000-0002-6026-8530>), Weecology [cph]
Maintainer: Glenda M. Yenni <glenda@weecology.org>

Diff between portalr versions 0.3.8 dated 2021-05-23 and 0.3.9 dated 2021-12-03

 portalr-0.3.8/portalr/man/get_data_versions.Rd                 |only
 portalr-0.3.9/portalr/DESCRIPTION                              |   13 
 portalr-0.3.9/portalr/MD5                                      |   27 
 portalr-0.3.9/portalr/NAMESPACE                                |    4 
 portalr-0.3.9/portalr/R/Weather.R                              |    8 
 portalr-0.3.9/portalr/R/download_data.R                        |  338 +++-------
 portalr-0.3.9/portalr/R/portalr-package.R                      |    1 
 portalr-0.3.9/portalr/R/summarize_plants.R                     |    1 
 portalr-0.3.9/portalr/R/zzz.R                                  |    2 
 portalr-0.3.9/portalr/inst/doc/portal_researcher_examples.html |   30 
 portalr-0.3.9/portalr/inst/doc/rodent-abundance-demo.html      |   67 -
 portalr-0.3.9/portalr/man/check_for_newer_data.Rd              |    5 
 portalr-0.3.9/portalr/man/download_observations.Rd             |   19 
 portalr-0.3.9/portalr/tests/testthat/test-01-data-retrieval.R  |   12 
 portalr-0.3.9/portalr/tests/testthat/test-99-regression.R      |   16 
 15 files changed, 225 insertions(+), 318 deletions(-)

More information about portalr at CRAN
Permanent link

Package GPBayes updated to version 0.1.0-3 with previous version 0.1.0-2.1 dated 2021-10-08

Title: Tools for Gaussian Process Modeling in Uncertainty Quantification
Description: Gaussian processes (GPs) have been widely used to model spatial data, spatio-temporal data, and computer experiments in diverse areas of statistics including spatial statistics, spatio-temporal statistics, uncertainty quantification, and machine learning. This package creates basic tools for fitting and prediction based on GPs with spatial data, spatio-temporal data, and computer experiments. Key characteristics for this GP tool include: (1) the comprehensive implementation of various covariance functions including the Matérn family and the Confluent Hypergeometric family with isotropic form, tensor form, and automatic relevance determination form, where the isotropic form is widely used in spatial statistics, the tensor form is widely used in design and analysis of computer experiments and uncertainty quantification, and the automatic relevance determination form is widely used in machine learning; (2) implementations via Markov chain Monte Carlo (MCMC) algorithms and optimization algorithms for GP models with all the implemented covariance functions. The methods for fitting and prediction are mainly implemented in a Bayesian framework; (3) model evaluation via Fisher information and predictive metrics such as predictive scores; (4) built-in functionality for simulating GPs with all the implemented covariance functions; (5) unified implementation to allow easy specification of various GPs.
Author: Pulong Ma [aut, cre]
Maintainer: Pulong Ma <mpulong@gmail.com>

Diff between GPBayes versions 0.1.0-2.1 dated 2021-10-08 and 0.1.0-3 dated 2021-12-03

 DESCRIPTION  |   10 +++++-----
 MD5          |    6 ++++--
 R/startup.R  |only
 configure    |   18 +++++++++---------
 inst/NEWS.Rd |only
 5 files changed, 18 insertions(+), 16 deletions(-)

More information about GPBayes at CRAN
Permanent link

Package ggstar updated to version 1.0.3 with previous version 1.0.2 dated 2021-04-07

Title: Multiple Geometric Shape Point Layer for 'ggplot2'
Description: To create the multiple polygonal point layer for easily discernible shapes, we developed the package, it is like the 'geom_point' of 'ggplot2'. It can be used to draw the scatter plot.
Author: Shuangbin Xu [aut, cre] (<https://orcid.org/0000-0003-3513-5362>)
Maintainer: Shuangbin Xu <xshuangbin@163.com>

Diff between ggstar versions 1.0.2 dated 2021-04-07 and 1.0.3 dated 2021-12-03

 DESCRIPTION                     |    9 ++++-----
 MD5                             |   24 ++++++++++++------------
 NEWS.md                         |   13 +++++++++++++
 R/geom-star.R                   |    9 ++++++++-
 R/scale-starshape.R             |    2 +-
 build/vignette.rds              |binary
 inst/doc/ggstar.Rmd             |    2 +-
 inst/doc/ggstar.html            |   39 ++++++++++++++++++++-------------------
 man/geom_star.Rd                |    2 ++
 man/scale_manual.Rd             |    9 ++++++---
 man/scale_starshape.Rd          |    9 ++++++---
 man/scale_starshape_identity.Rd |   18 ++++++++++++------
 vignettes/ggstar.Rmd            |    2 +-
 13 files changed, 86 insertions(+), 52 deletions(-)

More information about ggstar at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.