Title: Simplified Statistics for PA 606
Description: Simplifies functions assess normality for bivariate and multivariate statistical techniques, including hst(), box(), and qq(). Plots designed to replicate those that would result from similar calls in 'SPSS'. Also includes simplified formulae, such as mode(), scatter(), and ow.anova().
Author: Burrel Vann Jr [aut, cre]
Maintainer: Burrel Vann Jr <bvannjr@sdsu.edu>
Diff between vannstats versions 1.0.12.5 dated 2021-12-06 and 1.0.12.15 dated 2021-12-15
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++++++-- NAMESPACE | 5 +++++ R/howell_aids_long.R |only R/howell_aids_wide.R |only R/rm.anova.R |only data/howell_aids_long.RData |only data/howell_aids_wide.RData |only man/howell_aids_long.Rd |only man/howell_aids_wide.Rd |only man/rm.anova.Rd |only 11 files changed, 19 insertions(+), 6 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson <mark.stevenson1@unimelb.edu.au> and Evan Sergeant <evansergeant@gmail.com> with contributions from Telmo Nunes, Cord Heuer, Jonathon Marshall, Javier Sanchez, Ron Thornton, Jeno Reiczigel, Jim Robison-Cox, Paola Sebastiani, Peter Solymos, Kazuki Yoshida, Geoff Jones, Sarah Pirikahu, Simon Firestone, Ryan Kyle, Johann Popp, Mathew Jay, Charles Reynard, Allison Cheung, Nagendra Singanallur and Aniko Szabo.
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.39 dated 2021-11-10 and 2.0.40 dated 2021-12-15
DESCRIPTION | 8 MD5 | 42 +-- NEWS | 12 + R/epi.kappa.R | 90 ++++---- build/vignette.rds |binary inst/doc/epiR_RSurveillance.html | 4 inst/doc/epiR_descriptive.R | 51 +++- inst/doc/epiR_descriptive.Rmd | 62 ++++- inst/doc/epiR_descriptive.html | 318 +++++++++++++++-------------- inst/doc/epiR_measures_of_association.html | 8 inst/doc/epiR_sample_size.html | 4 inst/doc/epiR_surveillance.html | 4 man/epi.2by2.Rd | 8 man/epi.conf.Rd | 6 man/epi.dgamma.Rd | 2 man/epi.directadj.Rd | 2 man/epi.indirectadj.Rd | 2 man/epi.interaction.Rd | 4 man/epi.kappa.Rd | 18 + man/epi.smr.Rd | 4 man/epi.tests.Rd | 4 vignettes/epiR_descriptive.Rmd | 62 ++++- 22 files changed, 426 insertions(+), 289 deletions(-)
Title: Covariate Specific Treatment Effect (CSTE) Curve
Description: A uniform statistical inferential tool in making individualized treatment decisions, which implements the methods of Ma et al. (2017)<DOI:10.1177/0962280214541724>
and Guo et al. (2021)<DOI:10.1080/01621459.2020.1865167>. It uses a flexible semiparametric modeling strategy for heterogeneous treatment effect estimation in high-dimensional settings and can gave valid confidence bands. Based on it, one can find the subgroups of patients that benefit from each treatment, thereby making individualized treatment selection.
Author: Peng Wu [aut],
Wenjie Hu [aut, cre],
Yuhao Deng [aut],
Haoxiang Wang [aut],
Xiaohua Zhou [aut]
Maintainer: Wenjie Hu <huwenjie@pku.edu.cn>
Diff between CSTE versions 1.0 dated 2021-09-07 and 2.0.0 dated 2021-12-15
CSTE-1.0/CSTE/R/cste_surv_PCI.R |only CSTE-1.0/CSTE/R/predict_cste_surv.R |only CSTE-1.0/CSTE/R/select_cste_surv.R |only CSTE-1.0/CSTE/man/CSTE-package.Rd |only CSTE-1.0/CSTE/man/cste_surv_PCI.Rd |only CSTE-1.0/CSTE/man/predict_cste_surv.Rd |only CSTE-1.0/CSTE/man/select_cste_surv.Rd |only CSTE-2.0.0/CSTE/DESCRIPTION | 22 +-- CSTE-2.0.0/CSTE/MD5 | 26 +-- CSTE-2.0.0/CSTE/NAMESPACE | 67 ++++----- CSTE-2.0.0/CSTE/R/Tools.R |only CSTE-2.0.0/CSTE/R/cste_bin_SCB.R | 12 - CSTE-2.0.0/CSTE/R/cste_surv.R | 235 +++++---------------------------- CSTE-2.0.0/CSTE/R/cste_surv_SCB.R |only CSTE-2.0.0/CSTE/R/pkg.R | 5 CSTE-2.0.0/CSTE/man/cste_bin_SCB.Rd | 78 +++++----- CSTE-2.0.0/CSTE/man/cste_surv.Rd | 86 +----------- CSTE-2.0.0/CSTE/man/cste_surv_SCB.Rd |only CSTE-2.0.0/CSTE/man/tool.Rd | 60 ++++++++ 19 files changed, 215 insertions(+), 376 deletions(-)
Title: Bioequivalence Study Data Analysis
Description: Analyze bioequivalence study data with industrial strength. Sample size could be determined for various crossover designs, such as 2x2 design, 2x4 design, 4x4 design, Balaam design, Two-sequence dual design, and William design.
Reference: Chow SC, Liu JP. Design and Analysis of Bioavailability and Bioequivalence Studies. 3rd ed. (2009, ISBN:978-1-58488-668-6).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between BE versions 0.1.4 dated 2021-11-16 and 0.1.5 dated 2021-12-15
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/test2x2.R | 4 ++-- inst/NEWS.Rd | 7 +++++++ inst/doc/BE-manual.pdf |binary man/BE-package.Rd | 2 +- man/be2x2.Rd | 2 +- 7 files changed, 20 insertions(+), 13 deletions(-)
Title: R Bindings for Calling the 'Earth Engine' API
Description: Earth Engine <https://earthengine.google.com/> client library for R. All
of the 'Earth Engine' API classes, modules, and functions are made available. Additional
functions implemented include importing (exporting) of Earth Engine spatial objects,
extraction of time series, interactive map display, assets management interface,
and metadata display. See <https://r-spatial.github.io/rgee/> for further details.
Author: Cesar Aybar [aut, cre] (<https://orcid.org/0000-0003-2745-9535>),
Wu Qiusheng [ctb] (<https://orcid.org/0000-0001-5437-4073>),
Lesly Bautista [ctb] (<https://orcid.org/0000-0003-3523-8687>),
Roy Yali [ctb] (<https://orcid.org/0000-0003-4542-3755>),
Antony Barja [ctb] (<https://orcid.org/0000-0001-5921-2858>),
Kevin Ushey [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Tim Appelhans [ctb],
JJ Allaire [ctb],
Yuan Tang [ctb],
Samapriya Roy [ctb],
MariaElena Adauto [ctb] (<https://orcid.org/0000-0002-2154-2429>),
Gabriel Carrasco [ctb] (<https://orcid.org/0000-0002-6945-0419>),
Henrik Bengtsson [ctb],
Jeffrey Hollister [rev] (Hollister reviewed the package for JOSS, see
https://github.com/openjournals/joss-reviews/issues/2272/),
Gennadii Donchyts [rev] (Gena reviewed the package for JOSS, see
https://github.com/openjournals/joss-reviews/issues/2272/),
Marius Appel [rev] (Appel reviewed the package for JOSS, see
https://github.com/openjournals/joss-reviews/issues/2272/)
Maintainer: Cesar Aybar <csaybar@gmail.com>
Diff between rgee versions 1.1.0 dated 2021-08-10 and 1.1.2 dated 2021-12-15
rgee-1.1.0/rgee/inst/CITATION |only rgee-1.1.2/rgee/DESCRIPTION | 17 +++--- rgee-1.1.2/rgee/MD5 | 61 +++++++++++------------ rgee-1.1.2/rgee/NEWS.md | 15 +++++ rgee-1.1.2/rgee/R/addins.R | 16 +++--- rgee-1.1.2/rgee/R/ee_Initialize.R | 43 +++++++++++----- rgee-1.1.2/rgee/R/ee_check.R | 2 rgee-1.1.2/rgee/R/ee_clean.R | 14 ++--- rgee-1.1.2/rgee/R/ee_help.R | 6 ++ rgee-1.1.2/rgee/R/ee_install.R | 20 +++++-- rgee-1.1.2/rgee/R/ee_version.R | 2 rgee-1.1.2/rgee/R/raster_as_ee.R | 6 ++ rgee-1.1.2/rgee/R/sf_as_ee.R | 4 + rgee-1.1.2/rgee/R/utils-upload.R | 20 +++++-- rgee-1.1.2/rgee/R/zzz.R | 5 + rgee-1.1.2/rgee/inst/WORDLIST | 3 + rgee-1.1.2/rgee/inst/dataset.json | 2 rgee-1.1.2/rgee/inst/doc/rgee01.Rmd | 41 +++++++-------- rgee-1.1.2/rgee/inst/doc/rgee01.html | 38 +++++++------- rgee-1.1.2/rgee/inst/doc/rgee02.Rmd | 23 ++++---- rgee-1.1.2/rgee/inst/doc/rgee02.html | 16 +++--- rgee-1.1.2/rgee/man/ee_clean_credentials.Rd | 4 - rgee-1.1.2/rgee/man/ee_install.Rd | 9 +++ rgee-1.1.2/rgee/man/local_to_gcs.Rd | 5 + rgee-1.1.2/rgee/man/raster_as_ee.Rd | 4 + rgee-1.1.2/rgee/man/sf_as_ee.Rd | 4 + rgee-1.1.2/rgee/man/stars_as_ee.Rd | 4 + rgee-1.1.2/rgee/tests/testthat.R | 13 +++- rgee-1.1.2/rgee/tests/testthat/test-Initialize.R | 6 ++ rgee-1.1.2/rgee/tests/testthat/test-upload.R | 16 ++++-- rgee-1.1.2/rgee/vignettes/rgee01.Rmd | 41 +++++++-------- rgee-1.1.2/rgee/vignettes/rgee02.Rmd | 23 ++++---- 32 files changed, 300 insertions(+), 183 deletions(-)
Title: Improving MrP with Ensemble Learning
Description: A tool that improves the prediction performance of multilevel
regression with post-stratification (MrP) by combining a number of machine
learning methods. For information on the method, please refer to Broniecki,
Wüest, Leemann (2020) ''Improving Multilevel Regression with
Post-Stratification Through Machine Learning (autoMrP)'' forthcoming in
'Journal of Politics'. Final pre-print version:
<https://lucasleemann.files.wordpress.com/2020/07/automrp-r2pa.pdf>.
Author: Reto Wüest [aut] (<https://orcid.org/0000-0002-7502-6489>),
Lucas Leemann [aut] (<https://orcid.org/0000-0001-5201-869X>),
Philipp Broniecki [aut, cre] (<https://orcid.org/0000-0001-9214-4404>),
Hadley Wickham [ctb]
Maintainer: Philipp Broniecki <philippbroniecki@gmail.com>
Diff between autoMrP versions 0.98 dated 2021-01-21 and 0.99 dated 2021-12-15
DESCRIPTION | 8 MD5 | 107 ++++++------ NEWS.md | 4 R/auto_mrp.R | 295 ++++------------------------------- R/best_subset_classifier.R | 53 ++++-- R/boot_auto_mrp.R | 115 ++++--------- R/build_folds.R |only R/ebma.R | 8 R/globals.R | 85 +++++----- R/post_stratification.R | 48 +++-- R/run_classifiers.R |only R/run_gb.R | 37 ++-- R/run_svm.R | 19 +- R/utils.R | 337 +++++++++++++++++++++++++++++++++++++--- build/vignette.rds |binary man/absentee_census.Rd | 82 ++++----- man/absentee_voting.Rd | 90 +++++----- man/auto_MrP.Rd | 16 + man/best_subset_classifier.Rd | 84 ++++----- man/binary_cross_entropy.Rd | 86 +++++----- man/boot_auto_mrp.Rd | 5 man/cv_folding.Rd | 62 +++---- man/ebma.Rd | 188 +++++++++++----------- man/ebma_folding.Rd | 60 +++---- man/ebma_mc_draws.Rd | 196 +++++++++++------------ man/ebma_mc_tol.Rd | 196 +++++++++++------------ man/error_checks.Rd | 7 man/f1_score.Rd | 62 +++---- man/gb_classifier.Rd | 100 +++++------ man/gb_classifier_update.Rd | 46 ++--- man/lasso_classifier.Rd | 82 ++++----- man/log_spaced.Rd | 48 ++--- man/loss_function.Rd | 94 +++++------ man/loss_score_ranking.Rd | 50 ++--- man/mean_absolute_error.Rd | 62 +++---- man/mean_squared_error.Rd | 62 +++---- man/mean_squared_false_error.Rd | 62 +++---- man/model_list.Rd | 78 ++++----- man/model_list_pca.Rd | 84 ++++----- man/multicore.Rd | 46 ++--- man/output_table.Rd | 50 ++--- man/plot.autoMrP.Rd | 50 ++--- man/quiet.Rd | 3 man/run_best_subset.Rd | 156 +++++++++--------- man/run_best_subset_mc.Rd | 152 +++++++++--------- man/run_classifiers.Rd |only man/run_gb.Rd | 23 -- man/run_gb_mc.Rd | 167 +++++++++---------- man/run_lasso.Rd | 182 ++++++++++----------- man/run_lasso_mc_lambda.Rd | 176 ++++++++++---------- man/run_pca.Rd | 156 +++++++++--------- man/run_svm.Rd | 192 +++++++++++----------- man/run_svm_mc.Rd | 172 +++++++++----------- man/summary.autoMrP.Rd | 82 ++++----- man/survey_item.Rd | 86 +++++----- man/svm_classifier.Rd | 112 ++++++------- 56 files changed, 2450 insertions(+), 2373 deletions(-)
Title: Estimation of Forest Variables using the FIA Database
Description: The goal of 'rFIA' is to increase the accessibility and use of the United States Forest Services (USFS) Forest Inventory and Analysis (FIA) Database by providing a user-friendly, open source toolkit to easily query and analyze FIA Data. Designed to accommodate a wide range of potential user objectives, 'rFIA' simplifies the estimation of forest variables from the FIA Database and allows all R users (experts and newcomers alike) to unlock the flexibility inherent to the Enhanced FIA design. Specifically, 'rFIA' improves accessibility to the spatial-temporal estimation capacity of the FIA Database by producing space-time indexed summaries of forest variables within user-defined population boundaries. Direct integration with other popular R packages (e.g., 'dplyr', 'tidyr', and 'sf') facilitates efficient space-time query and data summary, and supports common data representations and API design. The package implements design-based estimation procedures outlined by Bechtold & Patterson (2005) <doi:10.2737/SRS-GTR-80>, and has been validated against estimates and sampling errors produced by FIA 'EVALIDator'. Current development is focused on the implementation of spatially-enabled model-assisted estimators to improve population, change, and ratio estimates.
Author: Hunter Stanke [aut, cre],
Andrew Finley [aut]
Maintainer: Hunter Stanke <stankehu@msu.edu>
Diff between rFIA versions 0.3.2 dated 2021-06-10 and 1.0.0 dated 2021-12-15
rFIA-0.3.2/rFIA/R/acHelper.R |only rFIA-0.3.2/rFIA/R/area.R |only rFIA-0.3.2/rFIA/R/areaChange.R |only rFIA-0.3.2/rFIA/R/areaHelper.R |only rFIA-0.3.2/rFIA/R/biomass.R |only rFIA-0.3.2/rFIA/R/biomassHelper.R |only rFIA-0.3.2/rFIA/R/carbon.R |only rFIA-0.3.2/rFIA/R/carbonHelper.R |only rFIA-0.3.2/rFIA/R/diversity.R |only rFIA-0.3.2/rFIA/R/diversityHelper.R |only rFIA-0.3.2/rFIA/R/dwm.R |only rFIA-0.3.2/rFIA/R/dwmHelper.R |only rFIA-0.3.2/rFIA/R/growMort.R |only rFIA-0.3.2/rFIA/R/growMortHelper.R |only rFIA-0.3.2/rFIA/R/invasive.R |only rFIA-0.3.2/rFIA/R/invasiveHelper.R |only rFIA-0.3.2/rFIA/R/rFIA-package.R |only rFIA-0.3.2/rFIA/R/seedHelper.R |only rFIA-0.3.2/rFIA/R/seedling.R |only rFIA-0.3.2/rFIA/R/standStruct.R |only rFIA-0.3.2/rFIA/R/standStructHelper.R |only rFIA-0.3.2/rFIA/R/tpa.R |only rFIA-0.3.2/rFIA/R/tpaHelper.R |only rFIA-0.3.2/rFIA/R/vegStruct.R |only rFIA-0.3.2/rFIA/R/vegStructHelper.R |only rFIA-0.3.2/rFIA/R/vitalRates.R |only rFIA-0.3.2/rFIA/R/vitalRatesHelper.R |only rFIA-0.3.2/rFIA/R/volHelper.R |only rFIA-0.3.2/rFIA/R/volume.R |only rFIA-0.3.2/rFIA/build |only rFIA-0.3.2/rFIA/man/biomass_old.Rd |only rFIA-0.3.2/rFIA/man/figures/lifecycle-archived.svg |only rFIA-0.3.2/rFIA/man/figures/lifecycle-defunct.svg |only rFIA-0.3.2/rFIA/man/figures/lifecycle-deprecated.svg |only rFIA-0.3.2/rFIA/man/figures/lifecycle-experimental.svg |only rFIA-0.3.2/rFIA/man/figures/lifecycle-maturing.svg |only rFIA-0.3.2/rFIA/man/figures/lifecycle-questioning.svg |only rFIA-0.3.2/rFIA/man/figures/lifecycle-soft-deprecated.svg |only rFIA-0.3.2/rFIA/man/figures/lifecycle-stable.svg |only rFIA-0.3.2/rFIA/man/figures/lifecycle-superseded.svg |only rFIA-0.3.2/rFIA/man/figures/logo.PNG |only rFIA-1.0.0/rFIA/DESCRIPTION | 15 rFIA-1.0.0/rFIA/MD5 | 142 rFIA-1.0.0/rFIA/NAMESPACE | 139 rFIA-1.0.0/rFIA/R/areaChange_new.R |only rFIA-1.0.0/rFIA/R/area_new.R |only rFIA-1.0.0/rFIA/R/biomass_new.R |only rFIA-1.0.0/rFIA/R/carbon_new.R |only rFIA-1.0.0/rFIA/R/clip.R | 867 +- rFIA-1.0.0/rFIA/R/customPSE.R |only rFIA-1.0.0/rFIA/R/diversity_new.R |only rFIA-1.0.0/rFIA/R/dwm_new.R |only rFIA-1.0.0/rFIA/R/fsi.R | 1772 ++--- rFIA-1.0.0/rFIA/R/fsiHelper.R | 982 +- rFIA-1.0.0/rFIA/R/functionsFIA.R | 4879 ++++++++------ rFIA-1.0.0/rFIA/R/getDesignWgts.R |only rFIA-1.0.0/rFIA/R/globalVars.R | 581 - rFIA-1.0.0/rFIA/R/growMort_new.R |only rFIA-1.0.0/rFIA/R/intersectFIA.R |only rFIA-1.0.0/rFIA/R/invasive_new.R |only rFIA-1.0.0/rFIA/R/plotFIA.R | 666 - rFIA-1.0.0/rFIA/R/readFIAHelper.R | 148 rFIA-1.0.0/rFIA/R/readWriteGet.R | 1062 +-- rFIA-1.0.0/rFIA/R/seedling_new.R |only rFIA-1.0.0/rFIA/R/standStruct_new.R |only rFIA-1.0.0/rFIA/R/tpa_new.R |only rFIA-1.0.0/rFIA/R/vegStruct_new.R |only rFIA-1.0.0/rFIA/R/vitalRates_new.R |only rFIA-1.0.0/rFIA/R/volume_new.R |only rFIA-1.0.0/rFIA/README.md | 551 - rFIA-1.0.0/rFIA/inst/CITATION | 52 rFIA-1.0.0/rFIA/inst/extdata/qrLM.jag | 58 rFIA-1.0.0/rFIA/inst/extdata/qrLMM.jag | 84 rFIA-1.0.0/rFIA/man/area.Rd | 277 rFIA-1.0.0/rFIA/man/areaChange.Rd | 297 rFIA-1.0.0/rFIA/man/biomass.Rd | 412 - rFIA-1.0.0/rFIA/man/carbon.Rd | 327 rFIA-1.0.0/rFIA/man/clipFIA.Rd | 135 rFIA-1.0.0/rFIA/man/countiesRI.Rd | 34 rFIA-1.0.0/rFIA/man/customPSE.Rd |only rFIA-1.0.0/rFIA/man/diversity.Rd | 357 - rFIA-1.0.0/rFIA/man/dwm.Rd | 306 rFIA-1.0.0/rFIA/man/fiaRI.Rd | 52 rFIA-1.0.0/rFIA/man/figures/README-unnamed-chunk-6-1.png |binary rFIA-1.0.0/rFIA/man/figures/README-unnamed-chunk-8-1.png |binary rFIA-1.0.0/rFIA/man/figures/logo.png |only rFIA-1.0.0/rFIA/man/findEVALID.Rd | 107 rFIA-1.0.0/rFIA/man/fsi.Rd | 377 - rFIA-1.0.0/rFIA/man/getDesignWgts.Rd |only rFIA-1.0.0/rFIA/man/getFIA.Rd | 121 rFIA-1.0.0/rFIA/man/growMort.Rd | 361 - rFIA-1.0.0/rFIA/man/intersectFIA.Rd |only rFIA-1.0.0/rFIA/man/invasive.Rd | 289 rFIA-1.0.0/rFIA/man/makeClasses.Rd | 129 rFIA-1.0.0/rFIA/man/plotFIA.Rd | 279 rFIA-1.0.0/rFIA/man/readFIA.Rd | 185 rFIA-1.0.0/rFIA/man/seedling.Rd | 329 rFIA-1.0.0/rFIA/man/standStruct.Rd | 322 rFIA-1.0.0/rFIA/man/tpa.Rd | 360 - rFIA-1.0.0/rFIA/man/vegStruct.Rd | 261 rFIA-1.0.0/rFIA/man/vitalRates.Rd | 359 - rFIA-1.0.0/rFIA/man/volume.Rd | 386 - rFIA-1.0.0/rFIA/man/writeFIA.Rd | 95 103 files changed, 9591 insertions(+), 8564 deletions(-)
Title: Learn Computer and Data Science using Algorithmic Trading
Description: Provide sets of functions and methods to learn and practice data science using idea of algorithmic trading.
Main goal is to process information within "Decision Support System" to come up with analysis or predictions.
There are several utilities such as dynamic and adaptive risk management using reinforcement learning
and even functions to generate predictions of price changes using pattern recognition deep regression learning.
Summary of Methods used: Awesome H2O tutorials: <https://github.com/h2oai/awesome-h2o>,
Market Type research of Van Tharp Institute: <https://www.vantharp.com/>,
Reinforcement Learning R package: <https://CRAN.R-project.org/package=ReinforcementLearning>.
Author: Vladimir Zhbanko
Maintainer: Vladimir Zhbanko <vladimir.zhbanko@gmail.com>
Diff between lazytrade versions 0.5.2 dated 2021-06-20 and 0.5.3 dated 2021-12-15
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 9 +++++++++ R/util_profit_factor.R | 2 +- README.md | 7 +++++-- man/util_profit_factor.Rd | 2 +- tests/testthat/test-util_profit_factor.R | 2 +- 7 files changed, 28 insertions(+), 16 deletions(-)
Title: Make 'ggplot2' Graphics Interactive
Description: Create interactive 'ggplot2' graphics using 'htmlwidgets'.
Author: David Gohel [aut, cre],
Panagiotis Skintzos [aut],
Mike Bostock [cph] (d3.js),
Speros Kokenes [cph] (d3-lasso),
Eric Shull [cph] (saveSvgAsPng js library),
Lee Thomason [cph] (TinyXML2),
Eric Book [ctb] (hline and vline geoms)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between ggiraph versions 0.8.0 dated 2021-12-08 and 0.8.1 dated 2021-12-15
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 11 +++++++++++ README.md | 4 ++-- inst/tinytest/test-fonts.R | 10 +++++++++- inst/tinytest/test-interactive_text_grob.R | 5 +++++ inst/tinytest/test-zz-dom.R | 3 +++ 7 files changed, 39 insertions(+), 12 deletions(-)
Title: Spatial Sampling Design and Analysis
Description: A design-based approach to statistical inference, with a focus on spatial data. Spatially balanced samples are selected using the Generalized Random Tessellation Stratified (GRTS) algorithm. The GRTS algorithm can be applied to finite resources (point geometries) and infinite resources (linear / linestring and areal / polygon geometries) and flexibly accommodates a diverse set of sampling design features, including stratification, unequal inclusion probabilities, proportional (to size) inclusion probabilities, legacy (historical) sites, a minimum distance between sites, and two options for replacement sites (reverse hierarchical order and nearest neighbor). Data are analyzed using a wide range of analysis functions that perform categorical variable analysis, continuous variable analysis, attributable risk analysis, risk difference analysis, relative risk analysis, change analysis, and trend analysis. spsurvey can also be used to summarize objects, visualize objects, select samples that are not spatially balanced, select panel samples, measure the amount of spatial balance in a sample, adjust design weights, and more.
Author: Michael Dumelle [aut, cre] (<https://orcid.org/0000-0002-3393-5529>),
Tom Kincaid [aut],
Tony Olsen [aut],
Marc Weber [aut],
Don Stevens [ctb],
Denis White [ctb]
Maintainer: Michael Dumelle <Dumelle.Michael@epa.gov>
Diff between spsurvey versions 5.0.1 dated 2021-10-20 and 5.1.0 dated 2021-12-15
spsurvey-5.0.1/spsurvey/R/UPpivotal.R |only spsurvey-5.0.1/spsurvey/R/localmean_df.R |only spsurvey-5.1.0/spsurvey/DESCRIPTION | 10 spsurvey-5.1.0/spsurvey/MD5 | 133 ++++---- spsurvey-5.1.0/spsurvey/NAMESPACE | 4 spsurvey-5.1.0/spsurvey/NEWS.md |only spsurvey-5.1.0/spsurvey/R/attrisk_analysis.R | 14 spsurvey-5.1.0/spsurvey/R/cat_analysis.R | 12 spsurvey-5.1.0/spsurvey/R/cdf_plot.R | 2 spsurvey-5.1.0/spsurvey/R/change_analysis.R | 2 spsurvey-5.1.0/spsurvey/R/cont_analysis.R | 89 +++-- spsurvey-5.1.0/spsurvey/R/cont_cdftest.R | 4 spsurvey-5.1.0/spsurvey/R/cov_panel_dsgn.R | 4 spsurvey-5.1.0/spsurvey/R/diffrisk_analysis.R | 9 spsurvey-5.1.0/spsurvey/R/dsgn_check.R | 113 +++++- spsurvey-5.1.0/spsurvey/R/grts.R | 128 +++++-- spsurvey-5.1.0/spsurvey/R/grtspts_ip.R | 3 spsurvey-5.1.0/spsurvey/R/irs.R | 53 ++- spsurvey-5.1.0/spsurvey/R/irs_stratum.R | 4 spsurvey-5.1.0/spsurvey/R/irspts_mindis.R | 7 spsurvey-5.1.0/spsurvey/R/localmean_cov.R | 2 spsurvey-5.1.0/spsurvey/R/localmean_var.R | 2 spsurvey-5.1.0/spsurvey/R/localmean_weight.R | 2 spsurvey-5.1.0/spsurvey/R/mean_est.R | 6 spsurvey-5.1.0/spsurvey/R/percentile_est.R | 9 spsurvey-5.1.0/spsurvey/R/power_dsgn.R | 6 spsurvey-5.1.0/spsurvey/R/ppd_plot.R | 8 spsurvey-5.1.0/spsurvey/R/relrisk_analysis.R | 11 spsurvey-5.1.0/spsurvey/R/sp_plot.R | 17 - spsurvey-5.1.0/spsurvey/R/spsurvey.R | 1 spsurvey-5.1.0/spsurvey/R/total_est.R |only spsurvey-5.1.0/spsurvey/R/total_localmean.R |only spsurvey-5.1.0/spsurvey/R/total_var.R |only spsurvey-5.1.0/spsurvey/R/trend_analysis.R | 2 spsurvey-5.1.0/spsurvey/README.md | 6 spsurvey-5.1.0/spsurvey/inst/CITATION | 4 spsurvey-5.1.0/spsurvey/inst/doc/EDA.R | 2 spsurvey-5.1.0/spsurvey/inst/doc/EDA.Rmd | 2 spsurvey-5.1.0/spsurvey/inst/doc/EDA.html | 31 - spsurvey-5.1.0/spsurvey/inst/doc/analysis.Rmd | 2 spsurvey-5.1.0/spsurvey/inst/doc/analysis.html | 11 spsurvey-5.1.0/spsurvey/inst/doc/sampling.R | 2 spsurvey-5.1.0/spsurvey/inst/doc/sampling.Rmd | 4 spsurvey-5.1.0/spsurvey/inst/doc/sampling.html | 43 +- spsurvey-5.1.0/spsurvey/inst/doc/start-here.html | 11 spsurvey-5.1.0/spsurvey/man/NE_Lakes_Legacy.Rd | 48 +- spsurvey-5.1.0/spsurvey/man/attrisk_analysis.Rd | 7 spsurvey-5.1.0/spsurvey/man/cat_analysis.Rd | 5 spsurvey-5.1.0/spsurvey/man/cdf_plot.Rd | 2 spsurvey-5.1.0/spsurvey/man/change_analysis.Rd | 2 spsurvey-5.1.0/spsurvey/man/cont_analysis.Rd | 46 +- spsurvey-5.1.0/spsurvey/man/cont_cdftest.Rd | 4 spsurvey-5.1.0/spsurvey/man/cov_panel_dsgn.Rd | 4 spsurvey-5.1.0/spsurvey/man/diffrisk_analysis.Rd | 7 spsurvey-5.1.0/spsurvey/man/grts.Rd | 74 ++-- spsurvey-5.1.0/spsurvey/man/irs.Rd | 72 ++-- spsurvey-5.1.0/spsurvey/man/localmean_cov.Rd |only spsurvey-5.1.0/spsurvey/man/localmean_var.Rd |only spsurvey-5.1.0/spsurvey/man/localmean_weight.Rd |only spsurvey-5.1.0/spsurvey/man/power_dsgn.Rd | 6 spsurvey-5.1.0/spsurvey/man/ppd_plot.Rd | 8 spsurvey-5.1.0/spsurvey/man/relrisk_analysis.Rd | 9 spsurvey-5.1.0/spsurvey/man/sp_plot.Rd | 7 spsurvey-5.1.0/spsurvey/man/trend_analysis.Rd | 2 spsurvey-5.1.0/spsurvey/tests/testthat/test-cont_analysis.R | 26 + spsurvey-5.1.0/spsurvey/tests/testthat/test-grts.R | 195 +++++++++++- spsurvey-5.1.0/spsurvey/tests/testthat/test-irs.R | 195 +++++++++++- spsurvey-5.1.0/spsurvey/tests/testthat/test-sp_plot.R | 2 spsurvey-5.1.0/spsurvey/tests/testthat/test-sp_rbind.R | 4 spsurvey-5.1.0/spsurvey/vignettes/EDA.Rmd | 2 spsurvey-5.1.0/spsurvey/vignettes/analysis.Rmd | 2 spsurvey-5.1.0/spsurvey/vignettes/sampling.Rmd | 4 72 files changed, 1106 insertions(+), 402 deletions(-)
Title: Clinical Trial Registry History
Description: Retrieves historical versions of clinical trial registry
entries.
Author: Benjamin Gregory Carlisle [aut, cre]
(<https://orcid.org/0000-0001-8975-0649>)
Maintainer: Benjamin Gregory Carlisle <murph@bgcarlisle.com>
Diff between cthist versions 0.1.1 dated 2021-11-30 and 0.1.2 dated 2021-12-15
DESCRIPTION | 6 +-- MD5 | 34 +++++++++++----------- NEWS.md | 5 +++ R/clinicaltrials_gov_dates.R | 3 + R/clinicaltrials_gov_version.R | 3 + R/drks_de_dates.R | 5 ++- R/drks_de_version.R | 11 ++++--- README.md | 10 +++++- man/clinicaltrials_gov_dates.Rd | 3 + man/clinicaltrials_gov_version.Rd | 3 + man/drks_de_dates.Rd | 3 + man/drks_de_version.Rd | 3 + tests/testthat/test-clinicaltrials_gov_dates.R | 4 +- tests/testthat/test-clinicaltrials_gov_download.R | 7 ++-- tests/testthat/test-clinicaltrials_gov_version.R | 6 +++ tests/testthat/test-drks_de_dates.R | 6 +++ tests/testthat/test-drks_de_download.R | 7 ++-- tests/testthat/test-drks_de_version.R | 6 +++ 18 files changed, 88 insertions(+), 37 deletions(-)
Title: Cell-Typing using Variance Adjusted Mahalanobis Distances with
Multi-Labeling
Description: Creates multi-label cell-types for single-cell RNA-sequencing data based on weighted VAM scoring of cell-type specific gene sets. Schiebout, Frost (2022) <https://psb.stanford.edu/psb-online/proceedings/psb22/schiebout.pdf>.
Author: H. Robert Frost [aut],
Courtney Schiebout [aut, cre] (<https://orcid.org/0000-0002-4830-8237>)
Maintainer: Courtney Schiebout <courtney.t.schiebout.gr@dartmouth.edu>
Diff between CAMML versions 0.1.0 dated 2021-12-01 and 0.1.1 dated 2021-12-15
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++++---- build/vignette.rds |binary inst/doc/CAMML_FigureVignette.Rnw |only inst/doc/CAMML_FigureVignette.pdf |only inst/doc/CAMML_Quick_Vignette.pdf |binary inst/doc/CAMML_Vignette.pdf |binary vignettes/CAMML_FigureVignette.Rnw |only vignettes/FigureVignette.pdf |only 9 files changed, 14 insertions(+), 10 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-12-15 2.20.36.3
2021-10-14 2.20.36.2
2021-10-11 2.20.36.1
2019-03-08 2.20.36
2018-06-12 2.20.35
2018-01-25 2.20.34
2017-05-10 2.20.33
2014-07-19 2.20.30
2014-07-19 2.20.31
2014-05-12 2.20.29
2014-02-22 2.20.27
2012-08-18 2.20.25
2012-08-17 2.20.24.1
2012-05-10 2.20.24
2012-05-06 2.20.23
2012-01-17 2.20.21
2011-10-04 2.20.19
2011-08-26 2.20.17
2011-08-05 2.20.16
2011-06-18 2.20.14
2011-06-15 2.20.13
2011-04-23 2.20.12
2011-04-13 2.20.11
2011-01-11 2.20.8
2011-01-05 2.20.7
2010-12-23 2.20.4
2010-11-04 2.20.3
2010-11-03 2.20.1
2010-01-31 2.12.18
2010-01-28 2.12.17
2009-07-18 2.12.15
2009-06-14 2.12.13
2009-06-02 2.12.12
2009-05-18 2.12.11
2009-03-26 2.12.10
2009-02-20 2.12.9
2009-02-06 2.12.8
2008-09-30 2.12.7
2008-08-14 2.12.6
2008-04-06 2.12.5-3
2008-04-04 2.12.5-1
2008-04-04 2.12.5-2
2008-04-01 2.12.5
2008-03-31 2.12.4
2008-01-04 2.12.2
2007-10-02 2.12.1
2007-09-30 2.12.0
2007-08-07 2.11.0-2
2007-07-29 2.11.0-1
2007-07-28 2.11.0
2007-07-07 2.10.13
2007-06-26 2.10.11
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-12-15 2.28.2.2
2021-10-11 2.28.2.1
2020-07-07 2.28.2
2020-06-28 2.28.1
2019-10-11 2.28
2019-08-02 2.27
2019-03-21 2.26
2018-06-12 2.25
2017-01-06 2.24
2015-12-13 2.23
2015-02-24 2.22
2015-01-20 2.21
2014-02-22 2.20
2011-10-24 2.19
2011-09-20 2.18
2011-09-16 2.17
2011-09-04 2.16
2011-05-03 2.15
2011-04-06 2.14-2
2010-10-05 2.14
2010-06-29 2.13
2010-06-10 2.12
2009-03-26 2.10
2008-10-07 2.9-1
2008-10-07 2.9-2
2008-04-30 2.8
2008-04-17 2.6
2008-04-16 2.6.1
2008-04-16 2.6
2008-01-19 2.6
2007-09-30 2.5
2007-06-22 2.3
Title: SYMPHONY in R
Description: An R interface to the SYMPHONY solver for mixed-integer linear programs.
Author: Reinhard Harter [aut],
Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Stefan Theussl [aut],
Cyrille Szymanski [ctb],
Florian Schwendinger [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between Rsymphony versions 0.1-31 dated 2021-04-06 and 0.1-32 dated 2021-12-15
DESCRIPTION | 8 ++++---- MD5 | 3 ++- src/Makevars.ucrt |only 3 files changed, 6 insertions(+), 5 deletions(-)
Title: R Bindings for Gtk 2.8.0 and Above
Description: Facilities in the R language for programming
graphical interfaces using Gtk, the Gimp Tool Kit.
Author: Michael Lawrence <michafla@gene.com> and Duncan Temple Lang <duncan@wald.ucdavis.edu>
Maintainer: ORPHANED
Diff between RGtk2 versions 2.20.36.2 dated 2021-10-14 and 2.20.36.3 dated 2021-12-15
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- src/Makevars.ucrt |only src/atkManuals.c | 2 ++ src/gobject.c | 3 ++- 5 files changed, 11 insertions(+), 7 deletions(-)
Title: Pin, Discover and Share Resources
Description: Publish data sets, models, and other R objects, making it
easy to share them across projects and with your colleagues. You can
pin objects to a variety of "boards", including local folders (to
share on a networked drive or with 'DropBox'), 'RStudio' connect,
Amazon S3, and more.
Author: Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>),
Javier Luraschi [aut],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between pins versions 1.0.0 dated 2021-10-02 and 1.0.1 dated 2021-12-15
pins-1.0.0/pins/inst/rstudio |only pins-1.0.0/pins/tests/testthat/_snaps/board_azure.md |only pins-1.0.0/pins/tests/testthat/test-board_azure.R |only pins-1.0.1/pins/DESCRIPTION | 36 - pins-1.0.1/pins/MD5 | 157 +++--- pins-1.0.1/pins/NEWS.md | 19 pins-1.0.1/pins/R/board_azure.R | 173 +++++-- pins-1.0.1/pins/R/board_folder.R | 2 pins-1.0.1/pins/R/board_kaggle.R | 2 pins-1.0.1/pins/R/board_ms365.R | 5 pins-1.0.1/pins/R/board_rsconnect.R | 23 pins-1.0.1/pins/R/board_rsconnect_bundle.R | 8 pins-1.0.1/pins/R/board_rsconnect_server.R | 39 + pins-1.0.1/pins/R/board_s3.R | 3 pins-1.0.1/pins/R/board_url.R | 7 pins-1.0.1/pins/R/legacy_azure.R | 4 pins-1.0.1/pins/R/legacy_board_registry.R | 4 pins-1.0.1/pins/R/legacy_datatxt.R | 5 pins-1.0.1/pins/R/legacy_dospaces.R | 2 pins-1.0.1/pins/R/legacy_gcloud.R | 2 pins-1.0.1/pins/R/legacy_github.R | 32 - pins-1.0.1/pins/R/legacy_kaggle.R | 5 pins-1.0.1/pins/R/legacy_local.R | 6 pins-1.0.1/pins/R/legacy_pin_registry.R | 7 pins-1.0.1/pins/R/legacy_s3.R | 2 pins-1.0.1/pins/R/pin-meta.R | 5 pins-1.0.1/pins/R/pin-read-write.R | 2 pins-1.0.1/pins/R/pin-store-fetch.R | 2 pins-1.0.1/pins/R/pin-upload-download.R | 2 pins-1.0.1/pins/R/utils.R | 4 pins-1.0.1/pins/R/zzz.R | 10 pins-1.0.1/pins/README.md | 9 pins-1.0.1/pins/build/vignette.rds |binary pins-1.0.1/pins/inst/doc/pins-update.Rmd | 2 pins-1.0.1/pins/inst/doc/pins-update.html | 212 ++++++++ pins-1.0.1/pins/inst/doc/pins.Rmd | 8 pins-1.0.1/pins/inst/doc/pins.html | 238 +++++++++- pins-1.0.1/pins/inst/doc/rsc.html | 196 ++++++++ pins-1.0.1/pins/inst/preview/index.html | 35 - pins-1.0.1/pins/man/board_azure.Rd | 43 + pins-1.0.1/pins/man/board_deparse.Rd | 2 pins-1.0.1/pins/man/board_register.Rd | 10 pins-1.0.1/pins/man/board_rsconnect.Rd | 8 pins-1.0.1/pins/man/legacy_azure.Rd | 2 pins-1.0.1/pins/man/legacy_datatxt.Rd | 10 pins-1.0.1/pins/man/legacy_dospace.Rd | 2 pins-1.0.1/pins/man/legacy_gcloud.Rd | 2 pins-1.0.1/pins/man/legacy_github.Rd | 18 pins-1.0.1/pins/man/legacy_kaggle.Rd | 7 pins-1.0.1/pins/man/legacy_local.Rd | 2 pins-1.0.1/pins/man/legacy_s3.Rd | 2 pins-1.0.1/pins/man/pin_browse.Rd | 2 pins-1.0.1/pins/man/pin_delete.Rd | 2 pins-1.0.1/pins/man/pin_download.Rd | 2 pins-1.0.1/pins/man/pin_exists.Rd | 2 pins-1.0.1/pins/man/pin_fetch.Rd | 4 pins-1.0.1/pins/man/pin_list.Rd | 2 pins-1.0.1/pins/man/pin_meta.Rd | 3 pins-1.0.1/pins/man/pin_reactive_read.Rd | 2 pins-1.0.1/pins/man/pin_read.Rd | 2 pins-1.0.1/pins/man/pin_search.Rd | 2 pins-1.0.1/pins/man/pin_versions.Rd | 2 pins-1.0.1/pins/man/pins-package.Rd | 7 pins-1.0.1/pins/tests/testthat/_snaps/board_azure_adls2.md |only pins-1.0.1/pins/tests/testthat/_snaps/board_azure_blob.md |only pins-1.0.1/pins/tests/testthat/_snaps/board_azure_file.md |only pins-1.0.1/pins/tests/testthat/_snaps/board_folder.md | 17 pins-1.0.1/pins/tests/testthat/_snaps/board_rsconnect.md | 2 pins-1.0.1/pins/tests/testthat/_snaps/board_rsconnect_bundle.md | 146 +++--- pins-1.0.1/pins/tests/testthat/_snaps/board_rsconnect_server.md | 9 pins-1.0.1/pins/tests/testthat/_snaps/pin-upload-download.md | 2 pins-1.0.1/pins/tests/testthat/test-board_azure_adls2.R |only pins-1.0.1/pins/tests/testthat/test-board_azure_blob.R |only pins-1.0.1/pins/tests/testthat/test-board_azure_file.R |only pins-1.0.1/pins/tests/testthat/test-board_folder.R | 29 - pins-1.0.1/pins/tests/testthat/test-board_rsconnect.R | 19 pins-1.0.1/pins/tests/testthat/test-board_rsconnect_bundle.R | 23 pins-1.0.1/pins/tests/testthat/test-board_rsconnect_server.R | 3 pins-1.0.1/pins/tools |only pins-1.0.1/pins/vignettes/pins-update.Rmd | 2 pins-1.0.1/pins/vignettes/pins.Rmd | 8 81 files changed, 1240 insertions(+), 428 deletions(-)
Title: Embeddable Cairo Graphics Device Driver
Description: This device uses Cairo and GTK to draw to the screen,
file (png, svg, pdf, and ps) or memory (arbitrary GdkDrawable
or Cairo context). The screen device may be embedded into RGtk2
interfaces and supports all interactive features of other graphics
devices, including getGraphicsEvent().
Author: Michael Lawrence
Maintainer: ORPHANED
Diff between cairoDevice versions 2.28.2.1 dated 2021-10-11 and 2.28.2.2 dated 2021-12-15
DESCRIPTION | 8 +++++--- MD5 | 3 ++- src/Makevars.ucrt |only 3 files changed, 7 insertions(+), 4 deletions(-)
Title: Variable Importance Measures for Multivariate Random Forests
Description: Calculates two sets of post-hoc variable importance measures for multivariate random forests. The first set of variable importance measures are given by the sum of mean split improvements for splits defined by feature j measured on user-defined examples (i.e., training or testing samples). The second set of importance measures are calculated on a per-outcome variable basis as the sum of mean absolute difference of node values for each split defined by feature j measured on user-defined examples (i.e., training or testing samples). The user can optionally threshold both sets of importance measures to include only splits that are statistically significant as measured using an F-test.
Author: Sikdar Sharmistha [aut],
Hooker Giles [aut],
Kadiyali Vrinda [ctb],
Dogonadze Nika [cre]
Maintainer: Dogonadze Nika <nika.dogonadze@toptal.com>
Diff between MulvariateRandomForestVarImp versions 0.0.1 dated 2021-12-03 and 0.0.2 dated 2021-12-15
DESCRIPTION | 12 - MD5 | 17 - R/mean_outcome_difference.R | 241 +++++++++++++------------- R/mean_split_improvement.R | 237 +++++++++++++------------ R/sysdata.rda |only README.md | 15 - man/MeanOutcomeDifference.Rd | 16 + man/MeanSplitImprovement.Rd | 16 + tests/testthat/test-mean_outcome_difference.R | 146 +++++++-------- tests/testthat/test-mean_split_improvement.R | 31 +-- 10 files changed, 393 insertions(+), 338 deletions(-)
More information about MulvariateRandomForestVarImp at CRAN
Permanent link
Title: Statistical Tests of Familial Hypotheses
Description: Provides functionality for testing familial hypotheses. Currently supports tests of
the Huber family of centers. Testing is carried out using the Bayesian bootstrap. One- and
two-sample tests are supported, as are directional tests. Methods for visualizing output are
provided.
Author: Ryan Thompson [aut, cre] (<https://orcid.org/0000-0002-9002-0448>)
Maintainer: Ryan Thompson <ryan.thompson@monash.edu>
Diff between familial versions 1.0.0 dated 2021-12-10 and 1.0.1 dated 2021-12-15
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 3 +++ R/weighted-stats.R | 9 ++------- README.md | 16 +++++++++------- inst/doc/vignette.html | 2 +- tests/testthat/test-center-test.R | 28 ++++++++++++++-------------- tests/testthat/test-fit-family.R | 28 ++++++++++++++-------------- 8 files changed, 54 insertions(+), 54 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-02 0.2.3
2020-04-29 0.2.2
2020-02-26 0.2.1
2020-02-13 0.2.0
2019-12-04 0.1.0
Title: Extract, Analyze and Visualize Mutational Signatures for Genomic
Variations
Description: Genomic alterations including single nucleotide
substitution, copy number alteration, etc. are the major force for
cancer initialization and development. Due to the specificity of
molecular lesions caused by genomic alterations, we can generate
characteristic alteration spectra, called 'signature' (Wang, Shixiang,
et al. (2020) <DOI:10.1371/journal.pgen.1009557> & Alexandrov, Ludmil
B., et al. (2020) <DOI:10.1038/s41586-020-1943-3>). This package helps
users to extract, analyze and visualize signatures from genomic
alteration records, thus providing new insight into cancer study.
Author: Shixiang Wang [aut, cre] (<https://orcid.org/0000-0001-9855-7357>),
Ziyu Tao [aut] (<https://orcid.org/0000-0003-3272-1227>),
Huimin Li [aut] (<https://orcid.org/0000-0003-1683-9057>),
Tao Wu [aut] (<https://orcid.org/0000-0002-8999-9628>),
Xue-Song Liu [aut, ctb] (<https://orcid.org/0000-0002-7736-0077>),
Anand Mayakonda [ctb]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between sigminer versions 2.1.1 dated 2021-10-29 and 2.1.2 dated 2021-12-15
DESCRIPTION | 6 +++--- MD5 | 18 ++++++++++-------- NEWS.md | 5 +++++ R/read_copynumber_seqz.R | 4 ++-- R/sig_estimate.R | 4 ++++ README.md | 2 ++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/sigminer.html | 8 ++++---- inst/extdata/human_hg19_gene_info.rds |only inst/extdata/mouse_mm9_gene_info.rds |only 11 files changed, 30 insertions(+), 17 deletions(-)
Title: Moder-Free Sure Independent Screening Procedures
Description: An implementation of popular screening methods that are commonly employed in ultra-high and high dimensional data. Through this publicly available package, we provide a unified framework to carry out model-free screening procedures including SIS (Fan and Lv (2008) <doi:10.1111/j.1467-9868.2008.00674.x>), SIRS(Zhu et al. (2011)<doi:10.1198/jasa.2011.tm10563>), DC-SIS (Li et al. (2012) <doi:10.1080/01621459.2012.695654>), MDC-SIS(Shao and Zhang (2014) <doi:10.1080/01621459.2014.887012>), Bcor-SIS (Pan et al. (2019) <doi:10.1080/01621459.2018.1462709>), PC-Screen (Liu et al. (2020) <doi:10.1080/01621459.2020.1783274>), WLS (Zhong et al.(2021) <doi:10.1080/01621459.2021.1918554>), Kfilter (Mai and Zou (2015) <doi:10.1214/14-AOS1303>), MVSIS (Cui et al. (2015) <doi:10.1080/01621459.2014.920256>) and CSIS.
Author: Xuewei Cheng [aut, cre],
Hong Wang [aut],
Liping Zhu [aut],
Wei Zhong [aut],
Hanpu Zhou [aut]
Maintainer: Xuewei Cheng <xwcheng@csu.edu.cn>
Diff between MFSIS versions 0.1.0 dated 2021-12-07 and 0.1.1 dated 2021-12-15
MFSIS-0.1.0/MFSIS/R/gendata1.R |only MFSIS-0.1.0/MFSIS/R/gendata2.R |only MFSIS-0.1.0/MFSIS/R/gendata3.R |only MFSIS-0.1.0/MFSIS/R/gendata4.R |only MFSIS-0.1.0/MFSIS/man/gendata1.Rd |only MFSIS-0.1.0/MFSIS/man/gendata2.Rd |only MFSIS-0.1.0/MFSIS/man/gendata3.Rd |only MFSIS-0.1.0/MFSIS/man/gendata4.Rd |only MFSIS-0.1.1/MFSIS/DESCRIPTION | 10 ++-- MFSIS-0.1.1/MFSIS/MD5 | 74 +++++++++++++++++--------------- MFSIS-0.1.1/MFSIS/NAMESPACE | 15 ++++-- MFSIS-0.1.1/MFSIS/NEWS.md | 4 + MFSIS-0.1.1/MFSIS/R/BcorSIS.R | 4 - MFSIS-0.1.1/MFSIS/R/CSIS.R | 4 - MFSIS-0.1.1/MFSIS/R/DCSIS.R | 2 MFSIS-0.1.1/MFSIS/R/GendataAFT.R |only MFSIS-0.1.1/MFSIS/R/GendataGP.R |only MFSIS-0.1.1/MFSIS/R/GendataIM.R |only MFSIS-0.1.1/MFSIS/R/GendataLDA.R |only MFSIS-0.1.1/MFSIS/R/GendataLGM.R |only MFSIS-0.1.1/MFSIS/R/GendataLM.R |only MFSIS-0.1.1/MFSIS/R/GendataPM.R |only MFSIS-0.1.1/MFSIS/R/GendataTM.R |only MFSIS-0.1.1/MFSIS/R/Kfilter.R | 10 ++-- MFSIS-0.1.1/MFSIS/R/MDCSIS.R | 2 MFSIS-0.1.1/MFSIS/R/MVSIS.R | 2 MFSIS-0.1.1/MFSIS/R/PCSIS.R | 6 +- MFSIS-0.1.1/MFSIS/R/SIRS.R | 2 MFSIS-0.1.1/MFSIS/R/SIS.R | 2 MFSIS-0.1.1/MFSIS/R/WLS.R | 2 MFSIS-0.1.1/MFSIS/man/BcorSIS.Rd | 4 - MFSIS-0.1.1/MFSIS/man/CSIS.Rd | 4 - MFSIS-0.1.1/MFSIS/man/DCSIS.Rd | 2 MFSIS-0.1.1/MFSIS/man/GendataAFT.Rd |only MFSIS-0.1.1/MFSIS/man/GendataGP.Rd |only MFSIS-0.1.1/MFSIS/man/GendataIM.Rd |only MFSIS-0.1.1/MFSIS/man/GendataLDA.Rd |only MFSIS-0.1.1/MFSIS/man/GendataLGM.Rd |only MFSIS-0.1.1/MFSIS/man/GendataLM.Rd |only MFSIS-0.1.1/MFSIS/man/GendataPM.Rd |only MFSIS-0.1.1/MFSIS/man/GendataTM.Rd |only MFSIS-0.1.1/MFSIS/man/Kfilter.Rd | 2 MFSIS-0.1.1/MFSIS/man/Kfilter_fused.Rd | 6 +- MFSIS-0.1.1/MFSIS/man/Kfilter_single.Rd | 2 MFSIS-0.1.1/MFSIS/man/MDCSIS.Rd | 2 MFSIS-0.1.1/MFSIS/man/MVSIS.Rd | 2 MFSIS-0.1.1/MFSIS/man/PCSIS.Rd | 6 +- MFSIS-0.1.1/MFSIS/man/SIRS.Rd | 2 MFSIS-0.1.1/MFSIS/man/SIS.Rd | 2 MFSIS-0.1.1/MFSIS/man/WLS.Rd | 2 50 files changed, 96 insertions(+), 79 deletions(-)
Title: Multivariate Autoregressive State-Space Modeling
Description: The MARSS package provides maximum-likelihood parameter estimation for constrained and unconstrained linear multivariate autoregressive state-space (MARSS) models fit to multivariate time-series data. Fitting is primarily via an Expectation-Maximization (EM) algorithm, although fitting via the BFGS algorithm (using the optim function) is also provided. MARSS models are a class of dynamic linear model (DLM) and vector autoregressive model (VAR) model. Functions are provided for parametric and innovations bootstrapping, Kalman filtering and smoothing, bootstrap model selection criteria (AICb), confidences intervals via the Hessian approximation and via bootstrapping and calculation of auxiliary residuals for detecting outliers and shocks. The user guide shows examples of using MARSS for parameter estimation for a variety of applications, model selection, dynamic factor analysis, outlier and shock detection, and addition of covariates. Online workshops (lectures, eBook, and computer labs) at <https://atsa-es.github.io/> See the NEWS file for update information.
Author: Elizabeth Eli Holmes, Eric J. Ward, Mark D. Scheuerell, and Kellie Wills
Maintainer: Elizabeth Holmes - NOAA Federal <eli.holmes@noaa.gov>
Diff between MARSS versions 3.11.3 dated 2020-10-21 and 3.11.4 dated 2021-12-15
DESCRIPTION | 16 - MD5 | 169 +++++----- NAMESPACE | 2 NEWS.md | 250 +++++++++------- R/MARSS.R | 4 R/MARSS_dfa.r | 18 - R/MARSShatyt.r | 12 R/autoplot_marssMLE.R | 513 ++++++++++++++++++++++++--------- R/autoplot_marssPredict.R | 82 +++-- R/autoplot_marssResiduals.R |only R/checkMARSSInputs.r | 2 R/coef_marssMLE.r | 15 R/fitted_marssMLE.r | 2 R/forecast_marssMLE.R | 6 R/plot_marssMLE.R | 369 +++++++++++------------ R/plot_marssPredict.R | 27 + R/plot_marssResiduals.R |only R/predict_marssMLE.R | 96 +++--- R/print_marssMLE.r | 75 ++-- R/residuals_marssMLE.R | 10 R/tsSmooth_marssMLE.R | 7 R/utility_functions.R | 53 +++ build/vignette.rds |binary inst/CITATION | 25 + inst/doc/Chapter_AnimalTracking.R | 15 inst/doc/Chapter_CombiningTrendData.R | 127 ++++---- inst/doc/Chapter_Covariates.R | 1 inst/doc/Chapter_KFAS.R | 15 inst/doc/Chapter_MLR.R | 2 inst/doc/Chapter_PVA.R | 41 +- inst/doc/Chapter_SealPopStructure.R | 281 +++++++++--------- inst/doc/Chapter_SealTrend.R | 20 - inst/doc/Chapter_SpeciesInteractions.R | 48 +-- inst/doc/Chapter_inits.R | 6 inst/doc/EMDerivation.Rnw | 104 +++--- inst/doc/EMDerivation.pdf |binary inst/doc/Quick_Examples.R | 114 +++---- inst/doc/Quick_Start.Rnw | 40 +- inst/doc/Quick_Start.pdf |binary inst/doc/Residuals.Rnw | 50 +-- inst/doc/Residuals.pdf |binary inst/doc/UserGuide.pdf |binary inst/doc/index.html | 2 man/CSEGtmufigure.Rd | 2 man/MARSS.Rd | 24 - man/MARSSFisherI.Rd | 2 man/MARSS_dfa.Rd | 24 - man/MARSS_marss.Rd | 18 - man/MARSS_marxss.Rd | 42 +- man/MARSSboot.Rd | 2 man/MARSShatyt.Rd | 2 man/MARSSinits.Rd | 12 man/MARSSkem.Rd | 14 man/MARSSkf.Rd | 8 man/MARSSoptim.Rd | 4 man/MARSSresiduals.Rd | 12 man/MARSSresiduals_tT.Rd | 6 man/MARSSresiduals_tt1.Rd | 6 man/MARSSresiduals_ttt.Rd | 10 man/MARSSvectorizeparam.Rd | 2 man/SalmonSurvCUI.Rd | 2 man/accuracy_marssMLE.Rd | 8 man/allowed.Rd | 2 man/as_marssMODEL.Rd | 2 man/checkMARSSInputs.Rd | 4 man/coef_marssMLE.Rd | 6 man/figures |only man/fitted_marssMLE.Rd | 20 - man/forecast_marssMLE.Rd | 9 man/harborSeal.Rd | 3 man/is_marssMLE.Rd | 20 - man/is_marssMODEL.Rd | 2 man/ldiag.Rd | 5 man/match_arg_exact.Rd |only man/plot_marssMLE.Rd | 80 +++-- man/plot_marssPredict.Rd | 16 - man/plot_marssResiduals.Rd |only man/predict_marssMLE.Rd | 46 +- man/print_marssMLE.Rd | 3 man/print_marssPredict.Rd | 4 man/residuals_marssMLE.Rd | 82 +++-- man/toLatex_marssMLE.Rd | 2 man/tsSmooth_marssMLE.Rd | 8 man/utility_functions.Rd | 4 vignettes/EMDerivation.Rnw | 104 +++--- vignettes/EMDerivation.bib | 2 vignettes/Quick_Start.Rnw | 40 +- vignettes/Residuals.Rnw | 50 +-- 88 files changed, 1929 insertions(+), 1404 deletions(-)
Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating random
and regular graphs, graph visualization, centrality methods and much more.
Author: See AUTHORS file.
Maintainer: Tamás Nepusz <ntamas@gmail.com>
Diff between igraph versions 1.2.9 dated 2021-11-23 and 1.2.10 dated 2021-12-15
DESCRIPTION | 6 +++--- MD5 | 22 ++++++++++++---------- NEWS.md | 8 +++++++- build/partial.rdb |binary configure | 21 ++++++++++++--------- configure.ac | 5 ++++- inst/NEWS.md | 8 +++++++- src/Makevars.ucrt | 2 +- src/Makevars.win | 2 +- src/igraph_version.h | 2 +- tests/testthat/helper.R | 13 +++++++++++++ tests/testthat/test_read_graph.R |only tests/testthat/zachary.graphml.gz |only 13 files changed, 61 insertions(+), 28 deletions(-)
Title: Gaussian Graphical Models with Nonconvex Regularization
Description: Estimate Gaussian graphical models with nonconvex penalties <doi:10.31234/osf.io/ad57p>,
including the atan Wang and Zhu (2016) <doi:10.1155/2016/6495417>,
seamless L0 Dicker, Huang, and Lin (2013) <doi:10.5705/ss.2011.074>,
exponential Wang, Fan, and Zhu <doi:10.1007/s10463-016-0588-3>,
smooth integration of counting and absolute deviation Lv and Fan (2009) <doi:10.1214/09-AOS683>,
logarithm Mazumder, Friedman, and Hastie (2011) <doi:10.1198/jasa.2011.tm09738>,
Lq, smoothly clipped absolute deviation Fan and Li (2001) <doi:10.1198/016214501753382273>,
and minimax concave penalty Zhang (2010) <doi:10.1214/09-AOS729>. There are also extensions
for computing variable inclusion probabilities, multiple regression coefficients, and
statistical inference <doi:10.1214/15-EJS1031>.
Author: Donald Williams [aut, cre]
Maintainer: Donald Williams <drwwilliams@ucdavis.edu>
Diff between GGMncv versions 2.1.0 dated 2021-12-14 and 2.1.1 dated 2021-12-15
DESCRIPTION | 6 +++--- MD5 | 5 +++-- build/GGMncv.pdf |only build/partial.rdb |binary 4 files changed, 6 insertions(+), 5 deletions(-)
Title: Boost C++ Header Files
Description: Boost provides free peer-reviewed portable C++ source
libraries. A large part of Boost is provided as C++ template code
which is resolved entirely at compile-time without linking. This
package aims to provide the most useful subset of Boost libraries
for template use among CRAN packages. By placing these libraries in
this package, we offer a more efficient distribution system for CRAN
as replication of this code in the sources of other packages is
avoided. As of release 1.78.0-0, the following Boost libraries are
included: 'accumulators' 'algorithm' 'align' 'any' 'atomic' 'beast'
'bimap' 'bind' 'circular_buffer' 'compute' 'concept' 'config'
'container' 'date_time' 'detail' 'dynamic_bitset' 'exception'
'flyweight' 'foreach' 'functional' 'fusion' 'geometry' 'graph' 'heap'
'icl' 'integer' 'interprocess' 'intrusive' 'io' 'iostreams'
'iterator' 'lambda2' 'math' 'move' 'mp11' 'mpl' 'multiprecision'
'numeric' 'pending' 'phoenix' 'polygon' 'preprocessor' 'process'
'propery_tree' 'random' 'range' 'scope_exit' 'smart_ptr' 'sort'
'spirit' 'tuple' 'type_traits' 'typeof' 'unordered' 'utility' 'uuid'.
Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between BH versions 1.75.0-0 dated 2021-01-11 and 1.78.0-0 dated 2021-12-15
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BH-1.78.0-0/BH/inst/include/boost/regex/v4/object_cache.hpp |only BH-1.78.0-0/BH/inst/include/boost/regex/v4/pattern_except.hpp |only BH-1.78.0-0/BH/inst/include/boost/regex/v4/perl_matcher.hpp | 17 BH-1.78.0-0/BH/inst/include/boost/regex/v4/perl_matcher_common.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/regex/v4/perl_matcher_non_recursive.hpp | 81 BH-1.78.0-0/BH/inst/include/boost/regex/v4/perl_matcher_recursive.hpp | 12 BH-1.78.0-0/BH/inst/include/boost/regex/v4/primary_transform.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/regex/v4/protected_call.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/regex/v4/regex.hpp | 36 BH-1.78.0-0/BH/inst/include/boost/regex/v4/regex_format.hpp | 6 BH-1.78.0-0/BH/inst/include/boost/regex/v4/regex_raw_buffer.hpp | 39 BH-1.78.0-0/BH/inst/include/boost/regex/v4/regex_token_iterator.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/regex/v4/regex_traits_defaults.hpp | 660 + BH-1.78.0-0/BH/inst/include/boost/regex/v4/states.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/regex/v4/unicode_iterator.hpp |only BH-1.78.0-0/BH/inst/include/boost/regex/v4/w32_regex_traits.hpp | 558 + BH-1.78.0-0/BH/inst/include/boost/regex/v5 |only BH-1.78.0-0/BH/inst/include/boost/regex_fwd.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/serialization/array_optimization.hpp | 6 BH-1.78.0-0/BH/inst/include/boost/serialization/library_version_type.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/smart_ptr/detail/shared_count.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/smart_ptr/detail/sp_counted_impl.hpp | 24 BH-1.78.0-0/BH/inst/include/boost/smart_ptr/shared_ptr.hpp | 60 BH-1.78.0-0/BH/inst/include/boost/sort/parallel_stable_sort/parallel_stable_sort.hpp | 12 BH-1.78.0-0/BH/inst/include/boost/sort/pdqsort/pdqsort.hpp | 180 BH-1.78.0-0/BH/inst/include/boost/spirit/home/classic/attribute/closure.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/spirit/home/classic/dynamic/impl/select.ipp | 10 BH-1.78.0-0/BH/inst/include/boost/spirit/home/classic/phoenix/closures.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/home/classic/phoenix/primitives.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/home/classic/phoenix/tuple_helpers.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/home/classic/phoenix/tuples.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/spirit/home/classic/utility/grammar_def.hpp | 12 BH-1.78.0-0/BH/inst/include/boost/spirit/home/karma/detail/pass_container.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/spirit/home/karma/detail/string_generate.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/spirit/home/karma/directive/as.hpp | 1 BH-1.78.0-0/BH/inst/include/boost/spirit/home/karma/directive/center_alignment.hpp | 1 BH-1.78.0-0/BH/inst/include/boost/spirit/home/karma/directive/delimit.hpp | 1 BH-1.78.0-0/BH/inst/include/boost/spirit/home/karma/directive/left_alignment.hpp | 1 BH-1.78.0-0/BH/inst/include/boost/spirit/home/karma/directive/omit.hpp | 1 BH-1.78.0-0/BH/inst/include/boost/spirit/home/karma/directive/right_alignment.hpp | 1 BH-1.78.0-0/BH/inst/include/boost/spirit/home/karma/numeric/detail/numeric_utils.hpp | 43 BH-1.78.0-0/BH/inst/include/boost/spirit/home/karma/numeric/detail/real_utils.hpp | 46 BH-1.78.0-0/BH/inst/include/boost/spirit/home/karma/numeric/real_policies.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/spirit/home/karma/phoenix_attributes.hpp | 6 BH-1.78.0-0/BH/inst/include/boost/spirit/home/karma/stream/stream.hpp | 1 BH-1.78.0-0/BH/inst/include/boost/spirit/home/lex/lexer/lexertl/generate_static.hpp | 5 BH-1.78.0-0/BH/inst/include/boost/spirit/home/lex/lexer/lexertl/lexer.hpp | 11 BH-1.78.0-0/BH/inst/include/boost/spirit/home/lex/lexer/lexertl/token.hpp | 17 BH-1.78.0-0/BH/inst/include/boost/spirit/home/lex/qi/state_switcher.hpp | 1 BH-1.78.0-0/BH/inst/include/boost/spirit/home/qi/detail/alternative_function.hpp | 12 BH-1.78.0-0/BH/inst/include/boost/spirit/home/qi/directive/raw.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/spirit/home/qi/numeric/detail/real_impl.hpp | 9 BH-1.78.0-0/BH/inst/include/boost/spirit/home/qi/numeric/real_policies.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/spirit/home/qi/string/detail/tst.hpp | 1 BH-1.78.0-0/BH/inst/include/boost/spirit/home/qi/string/tst_map.hpp | 37 BH-1.78.0-0/BH/inst/include/boost/spirit/home/support/algorithm/any_if_ns_so.hpp | 1 BH-1.78.0-0/BH/inst/include/boost/spirit/home/support/char_class.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/spirit/home/support/char_encoding/standard.hpp | 1 BH-1.78.0-0/BH/inst/include/boost/spirit/home/support/char_encoding/unicode.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/spirit/home/support/char_set/range_functions.hpp | 8 BH-1.78.0-0/BH/inst/include/boost/spirit/home/support/detail/hold_any.hpp | 14 BH-1.78.0-0/BH/inst/include/boost/spirit/home/support/detail/lexer/parser/tokeniser/re_tokeniser_helper.hpp | 12 BH-1.78.0-0/BH/inst/include/boost/spirit/home/support/info.hpp | 6 BH-1.78.0-0/BH/inst/include/boost/spirit/home/support/utf8.hpp | 7 BH-1.78.0-0/BH/inst/include/boost/spirit/home/support/utree/detail/utree_detail2.hpp | 15 BH-1.78.0-0/BH/inst/include/boost/spirit/home/support/utree/operators.hpp | 10 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/binary/binary.hpp | 22 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/char/char_class.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/core/action.hpp | 6 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/directive/raw.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/directive/seek.hpp | 15 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/nonterminal/detail/rule.hpp | 23 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/nonterminal/detail/transform_attribute.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/nonterminal/rule.hpp | 82 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/operator/detail/alternative.hpp | 38 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/operator/detail/sequence.hpp | 8 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/operator/list.hpp | 5 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/operator/optional.hpp | 1 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/string/detail/tst.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/string/literal_string.hpp | 1 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/string/tst.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/support/numeric_utils/detail/extract_int.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/support/numeric_utils/extract_real.hpp | 7 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/support/traits/print_attribute.hpp | 25 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/support/traits/print_token.hpp | 12 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/support/traits/pseudo_attribute.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/support/traits/variant_find_substitute.hpp | 12 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/support/traits/variant_has_substitute.hpp | 20 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/support/utility/annotate_on_success.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/support/utility/error_reporting.hpp | 46 BH-1.78.0-0/BH/inst/include/boost/spirit/home/x3/version.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/spirit/include/phoenix.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/include/phoenix_algorithm.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/include/phoenix_bind.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/include/phoenix_container.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/include/phoenix_core.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/include/phoenix_function.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/include/phoenix_fusion.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/include/phoenix_limits.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/include/phoenix_object.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/include/phoenix_operator.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/include/phoenix_scope.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/include/phoenix_statement.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/include/phoenix_stl.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/include/phoenix_version.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/spirit/include/version.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/spirit/repository/home/qi/directive/distinct.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/spirit/repository/home/qi/operator/detail/keywords.hpp | 10 BH-1.78.0-0/BH/inst/include/boost/spirit/repository/home/qi/operator/keywords.hpp | 13 BH-1.78.0-0/BH/inst/include/boost/static_assert.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/system/detail/append_int.hpp |only BH-1.78.0-0/BH/inst/include/boost/system/detail/config.hpp | 22 BH-1.78.0-0/BH/inst/include/boost/system/detail/error_category.hpp | 53 BH-1.78.0-0/BH/inst/include/boost/system/detail/error_category_impl.hpp | 74 BH-1.78.0-0/BH/inst/include/boost/system/detail/error_code.hpp | 534 + BH-1.78.0-0/BH/inst/include/boost/system/detail/error_condition.hpp | 188 BH-1.78.0-0/BH/inst/include/boost/system/detail/generic_category_message.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/system/detail/interop_category.hpp |only BH-1.78.0-0/BH/inst/include/boost/system/detail/is_same.hpp |only BH-1.78.0-0/BH/inst/include/boost/system/detail/snprintf.hpp |only BH-1.78.0-0/BH/inst/include/boost/system/detail/std_category.hpp |only BH-1.78.0-0/BH/inst/include/boost/system/detail/system_category_condition_win32.hpp | 7 BH-1.78.0-0/BH/inst/include/boost/system/detail/system_category_impl.hpp | 14 BH-1.78.0-0/BH/inst/include/boost/system/detail/system_category_message_win32.hpp | 26 BH-1.78.0-0/BH/inst/include/boost/system/error_code.hpp | 33 BH-1.78.0-0/BH/inst/include/boost/system/system_error.hpp | 108 BH-1.78.0-0/BH/inst/include/boost/test/detail/suppress_warnings.hpp | 8 BH-1.78.0-0/BH/inst/include/boost/thread/pthread/thread_data.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/throw_exception.hpp | 79 BH-1.78.0-0/BH/inst/include/boost/tuple/tuple.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/type_index.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/type_index/ctti_type_index.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/type_index/detail/compile_time_type_info.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/type_index/detail/ctti_register_class.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/type_index/detail/stl_register_class.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/type_index/stl_type_index.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/type_index/type_index_facade.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/type_traits/detail/is_function_cxx_11.hpp | 415 BH-1.78.0-0/BH/inst/include/boost/type_traits/detail/is_function_ptr_tester.hpp | 54 BH-1.78.0-0/BH/inst/include/boost/type_traits/detail/is_likely_lambda.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/type_traits/detail/is_mem_fun_pointer_tester.hpp | 54 BH-1.78.0-0/BH/inst/include/boost/type_traits/detail/is_member_function_pointer_cxx_11.hpp | 459 BH-1.78.0-0/BH/inst/include/boost/type_traits/is_convertible.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/type_traits/is_empty.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/type_traits/type_with_alignment.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/units/io.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/utility/base_from_member.hpp | 3 BH-1.78.0-0/BH/inst/include/boost/utility/binary.hpp | 5 BH-1.78.0-0/BH/inst/include/boost/utility/detail/result_of_variadic.hpp |only BH-1.78.0-0/BH/inst/include/boost/utility/in_place_factory.hpp | 6 BH-1.78.0-0/BH/inst/include/boost/utility/result_of.hpp | 33 BH-1.78.0-0/BH/inst/include/boost/utility/string_view.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/utility/typed_in_place_factory.hpp | 7 BH-1.78.0-0/BH/inst/include/boost/utility/value_init.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/uuid/uuid_io.hpp | 29 BH-1.78.0-0/BH/inst/include/boost/variant/detail/apply_visitor_binary.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/detail/apply_visitor_unary.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/detail/config.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/detail/element_index.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/detail/forced_return.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/detail/has_result_type.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/detail/hash_variant.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/detail/make_variant_list.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/detail/move.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/detail/std_hash.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/detail/visitation_impl.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/get.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/variant/recursive_variant.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/recursive_wrapper_fwd.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/static_visitor.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/variant.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant/variant_fwd.hpp | 2 BH-1.78.0-0/BH/inst/include/boost/variant2 |only BH-1.78.0-0/BH/inst/include/boost/version.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/winapi/config.hpp | 4 BH-1.78.0-0/BH/inst/include/boost/winapi/error_handling.hpp | 4 2349 files changed, 76739 insertions(+), 56747 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-11 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-12 0.0.1