Title: Functions to Extract and Clean World Football (Soccer) Data
Description: A set of functions to allow users to obtain clean and tidy
football (soccer) game, team and player data. Data is collected from a
number of popular sites, including 'FBref'<https://fbref.com/en/>,
transfer and valuations data from
'Transfermarkt'<https://www.transfermarkt.com/> and shooting location
data from 'Understat'<https://understat.com/>. It gives users the
ability to access data more efficiently, rather than having to export
data tables to files before being able to complete their analysis.
Author: Jason Zivkovic [aut, cre, cph],
Tony ElHabr [ctb]
Maintainer: Jason Zivkovic <jaseziv83@gmail.com>
Diff between worldfootballR versions 0.4.5 dated 2021-11-25 and 0.4.8 dated 2022-01-05
DESCRIPTION | 6 MD5 | 47 ++-- NAMESPACE | 4 NEWS.md | 36 +++ R/fb_team_player_stats.R |only R/get_season_team_stats.R | 39 +++ R/tm_player_bio.R | 2 R/tm_staff_job_history.R |only R/tm_team_staff_history.R |only R/worldfootballr_helpers.R | 55 +++++ README.md | 28 ++ build/vignette.rds |binary inst/doc/extract-fbref-data.R | 10 inst/doc/extract-fbref-data.Rmd | 33 +++ inst/doc/extract-fbref-data.html | 321 ++++++++++++++++++------------- inst/doc/extract-transfermarkt-data.R | 26 ++ inst/doc/extract-transfermarkt-data.Rmd | 65 ++++++ inst/doc/extract-transfermarkt-data.html | 244 +++++++++++++++-------- inst/doc/extract-understat-data.html | 149 ++++++++------ inst/doc/fbref-data-internationals.html | 173 +++++++++------- man/fb_team_player_stats.Rd |only man/tm_staff_job_history.Rd |only man/tm_team_staff_history.Rd |only man/tm_team_staff_urls.Rd |only tests/testthat/test-fbref.R | 21 +- tests/testthat/test-transfermarkt.R | 57 +++++ vignettes/extract-fbref-data.Rmd | 33 +++ vignettes/extract-transfermarkt-data.Rmd | 65 ++++++ 28 files changed, 1033 insertions(+), 381 deletions(-)
More information about worldfootballR at CRAN
Permanent link
Title: Preparation, Checking and Post-Processing Data for PK/PD
Modeling
Description: Efficient tools for preparation, checking and post-processing of data in PK/PD (pharmacokinetics/pharmacodynamics) modeling, with focus on use of Nonmem. Helps with trivial but tedious tasks and tries to identify errors to save time on debugging. Implemented in 'data.table', but easily integrated with 'base' and 'tidyverse'.
Author: Philip Delff [aut, cre]
Maintainer: Philip Delff <philip@delff.dk>
Diff between NMdata versions 0.0.9 dated 2021-08-09 and 0.0.10 dated 2022-01-05
NMdata-0.0.10/NMdata/DESCRIPTION | 10 NMdata-0.0.10/NMdata/MD5 | 566 NMdata-0.0.10/NMdata/NAMESPACE | 9 NMdata-0.0.10/NMdata/NEWS.md | 86 NMdata-0.0.10/NMdata/R/NMapplyFilters.R | 19 NMdata-0.0.10/NMdata/R/NMcheckColnames.R | 65 NMdata-0.0.10/NMdata/R/NMcheckData.R |only NMdata-0.0.10/NMdata/R/NMcheckDataFile.R |only NMdata-0.0.10/NMdata/R/NMcode2R.R | 108 NMdata-0.0.10/NMdata/R/NMdataConf.R | 792 NMdata-0.0.10/NMdata/R/NMdata_utils.R | 136 NMdata-0.0.10/NMdata/R/NMextractDataFile.R | 125 NMdata-0.0.10/NMdata/R/NMextractText.R | 1 NMdata-0.0.10/NMdata/R/NMgenText.R |only NMdata-0.0.10/NMdata/R/NMinfo.R | 108 NMdata-0.0.10/NMdata/R/NMisNumeric.R | 72 NMdata-0.0.10/NMdata/R/NMorderColumns.R | 7 NMdata-0.0.10/NMdata/R/NMreadCsv.R | 2 NMdata-0.0.10/NMdata/R/NMreadSection.R | 9 NMdata-0.0.10/NMdata/R/NMreadTab.R | 6 NMdata-0.0.10/NMdata/R/NMscanData.R | 1743 - NMdata-0.0.10/NMdata/R/NMscanInput.R | 447 NMdata-0.0.10/NMdata/R/NMscanTables.R | 394 NMdata-0.0.10/NMdata/R/NMstamp.R | 2 NMdata-0.0.10/NMdata/R/NMtransInp.R | 253 NMdata-0.0.10/NMdata/R/NMwriteData.R | 261 NMdata-0.0.10/NMdata/R/NMwriteSection.R | 223 NMdata-0.0.10/NMdata/R/cc.R |only NMdata-0.0.10/NMdata/R/checkColRow.R | 66 NMdata-0.0.10/NMdata/R/compareCols.R | 284 NMdata-0.0.10/NMdata/R/dims.R | 88 NMdata-0.0.10/NMdata/R/egdt.R | 97 NMdata-0.0.10/NMdata/R/findCovs.R | 31 NMdata-0.0.10/NMdata/R/findVars.R | 24 NMdata-0.0.10/NMdata/R/flagsAssign.R | 661 NMdata-0.0.10/NMdata/R/flagsCount.R | 45 NMdata-0.0.10/NMdata/R/fnExtension.R | 30 NMdata-0.0.10/NMdata/R/mergeCheck.R | 43 NMdata-0.0.10/NMdata/R/messageWrap.R | 68 NMdata-0.0.10/NMdata/R/renameByContents.R | 130 NMdata-0.0.10/NMdata/R/summary_NMdata.R | 462 NMdata-0.0.10/NMdata/R/writeNMinfo.R | 67 NMdata-0.0.10/NMdata/R/zzz.R | 20 NMdata-0.0.10/NMdata/README.md | 58 NMdata-0.0.10/NMdata/build/vignette.rds |binary NMdata-0.0.10/NMdata/inst/doc/DataPrepare.R |only NMdata-0.0.10/NMdata/inst/doc/DataPrepare.Rmd |only NMdata-0.0.10/NMdata/inst/doc/DataPrepare.html |only NMdata-0.0.10/NMdata/inst/doc/NMdata-FAQ.R | 3 NMdata-0.0.10/NMdata/inst/doc/NMdata-FAQ.Rmd | 42 NMdata-0.0.10/NMdata/inst/doc/NMdata-FAQ.html | 289 NMdata-0.0.10/NMdata/inst/doc/NMdata-cheat.R |only NMdata-0.0.10/NMdata/inst/doc/NMdata-cheat.Rmd |only NMdata-0.0.10/NMdata/inst/doc/NMdata-cheat.html |only NMdata-0.0.10/NMdata/inst/doc/NMscanData.R | 4 NMdata-0.0.10/NMdata/inst/doc/NMscanData.Rmd | 12 NMdata-0.0.10/NMdata/inst/doc/NMscanData.html | 255 NMdata-0.0.10/NMdata/inst/examples/data/data_documentation.R | 94 NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr001.lst | 950 NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr001.mod | 116 NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr001_res.txt | 1816 - NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr001dir/input.txt | 116 NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr001dir/output.txt | 110 NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr001dir/xgxr001_res.txt | 1816 - NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr002.lst | 6708 ++--- NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr002.mod | 104 NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr002_res.txt | 1816 - NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr003.lst |12502 ++++----- NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr003.mod | 112 NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr003_res.txt | 1816 - NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr003_res_fo.txt | 304 NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr003_res_vols.txt | 1816 - NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr014.lst | 782 NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr014.mod | 96 NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr014_res.txt | 1816 - NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr018.lst |12504 +++++----- NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr018.mod | 114 NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr018_res.txt | 1816 - NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr018_res_fo.txt | 304 NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr018_res_vols.txt | 1816 - NMdata-0.0.10/NMdata/inst/examples/nonmem/xgxr018_vols.txt | 1816 - NMdata-0.0.10/NMdata/man/NMapplyFilters.Rd | 97 NMdata-0.0.10/NMdata/man/NMcheckColnames.Rd | 51 NMdata-0.0.10/NMdata/man/NMcheckData.Rd |only NMdata-0.0.10/NMdata/man/NMcheckDataFile.Rd |only NMdata-0.0.10/NMdata/man/NMdataConf.Rd | 260 NMdata-0.0.10/NMdata/man/NMdataConfOptions.Rd | 38 NMdata-0.0.10/NMdata/man/NMdataDecideOption.Rd | 38 NMdata-0.0.10/NMdata/man/NMdataGetOption.Rd | 34 NMdata-0.0.10/NMdata/man/NMdataOperations.Rd | 84 NMdata-0.0.10/NMdata/man/NMextractDataFile.Rd | 51 NMdata-0.0.10/NMdata/man/NMextractText.Rd | 207 NMdata-0.0.10/NMdata/man/NMgenText.Rd |only NMdata-0.0.10/NMdata/man/NMinfo.Rd | 60 NMdata-0.0.10/NMdata/man/NMisNumeric.Rd | 54 NMdata-0.0.10/NMdata/man/NMorderColumns.Rd | 2 NMdata-0.0.10/NMdata/man/NMreadCsv.Rd | 2 NMdata-0.0.10/NMdata/man/NMreadSection.Rd | 184 NMdata-0.0.10/NMdata/man/NMscanData.Rd | 5 NMdata-0.0.10/NMdata/man/NMscanInput.Rd | 2 NMdata-0.0.10/NMdata/man/NMscanTables.Rd | 7 NMdata-0.0.10/NMdata/man/NMstamp.Rd | 94 NMdata-0.0.10/NMdata/man/NMtransInp.Rd | 49 NMdata-0.0.10/NMdata/man/NMwriteData.Rd | 81 NMdata-0.0.10/NMdata/man/NMwriteSection.Rd | 168 NMdata-0.0.10/NMdata/man/cc.Rd |only NMdata-0.0.10/NMdata/man/checkColRow.Rd | 44 NMdata-0.0.10/NMdata/man/compareCols.Rd | 155 NMdata-0.0.10/NMdata/man/dims.Rd | 72 NMdata-0.0.10/NMdata/man/egdt.Rd | 85 NMdata-0.0.10/NMdata/man/figures/README-NMscanData-example1-1.png |only NMdata-0.0.10/NMdata/man/figures/README-unnamed-chunk-2-1.png |only NMdata-0.0.10/NMdata/man/figures/apple-touch-icon-180x180.png |only NMdata-0.0.10/NMdata/man/figures/logo.png |only NMdata-0.0.10/NMdata/man/findCovs.Rd | 25 NMdata-0.0.10/NMdata/man/findVars.Rd | 23 NMdata-0.0.10/NMdata/man/flagsAssign.Rd | 28 NMdata-0.0.10/NMdata/man/flagsCount.Rd | 31 NMdata-0.0.10/NMdata/man/fnExtension.Rd | 46 NMdata-0.0.10/NMdata/man/is.NMdata.Rd | 34 NMdata-0.0.10/NMdata/man/mergeCheck.Rd | 20 NMdata-0.0.10/NMdata/man/renameByContents.Rd | 83 NMdata-0.0.10/NMdata/man/unNMdata.Rd | 34 NMdata-0.0.10/NMdata/man/writeNMinfo.Rd | 50 NMdata-0.0.10/NMdata/tests/testthat.R | 35 NMdata-0.0.10/NMdata/tests/testthat/testData/data/data_documentation.R |only NMdata-0.0.10/NMdata/tests/testthat/testData/data/xgxr001.csv |only NMdata-0.0.10/NMdata/tests/testthat/testData/data/xgxr1.csv |only NMdata-0.0.10/NMdata/tests/testthat/testData/data/xgxr1_flag0.csv |only NMdata-0.0.10/NMdata/tests/testthat/testData/data/xgxr2.csv |only NMdata-0.0.10/NMdata/tests/testthat/testData/data/xgxr2.rds |only NMdata-0.0.10/NMdata/tests/testthat/testData/data/xgxr2_flag0.csv |only NMdata-0.0.10/NMdata/tests/testthat/testData/data/xgxr2_flag0.rds |only NMdata-0.0.10/NMdata/tests/testthat/testData/data/xgxr2_flag0_meta.txt |only NMdata-0.0.10/NMdata/tests/testthat/testData/data/xgxr2_meta.txt |only NMdata-0.0.10/NMdata/tests/testthat/testData/data/xgxr3.csv |only NMdata-0.0.10/NMdata/tests/testthat/testData/data/xgxr3.rds |only NMdata-0.0.10/NMdata/tests/testthat/testData/data/xgxr4.csv |only NMdata-0.0.10/NMdata/tests/testthat/testData/data/xgxr4.rds |only NMdata-0.0.10/NMdata/tests/testthat/testData/nonmem/check.time |only NMdata-0.0.10/NMdata/tests/testthat/testData/nonmem/estim_debug.lst | 1086 NMdata-0.0.10/NMdata/tests/testthat/testData/nonmem/min036.mod | 204 NMdata-0.0.10/NMdata/tests/testthat/testData/nonmem/min036mod.mod | 204 NMdata-0.0.10/NMdata/tests/testthat/testData/nonmem/simvpcdata_debug.csv | 200 NMdata-0.0.10/NMdata/tests/testthat/testData/nonmem/xgxr001.lst |only NMdata-0.0.10/NMdata/tests/testthat/testData/nonmem/xgxr001.mod |only NMdata-0.0.10/NMdata/tests/testthat/testData/nonmem/xgxr001_res.txt |only NMdata-0.0.10/NMdata/tests/testthat/testData/nonmem/xgxr001dir |only NMdata-0.0.10/NMdata/tests/testthat/testData/nonmem/xgxr002.lst |only NMdata-0.0.10/NMdata/tests/testthat/testData/nonmem/xgxr002.mod |only 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Title: Wrapper for 'Visa Chart Components'
Description: Provides a set of wrapper functions for 'Visa Chart Components'.
'Visa Chart Components' <https://github.com/visa/visa-chart-components> is an accessibility focused,
framework agnostic set of data experience design systems components for the web.
Author: Christopher DeMartini [aut, cre],
Jaime Tanner [aut],
Frank Elavsky [aut],
Wojtek Kostelecki [ctb],
Visa Data Experience Team [aut, fnd],
Visa, Inc. [cph]
Maintainer: Christopher DeMartini <chris.demartini.npm@gmail.com>
Diff between visachartR versions 1.1.1 dated 2021-11-02 and 2.0.0 dated 2022-01-05
visachartR-1.1.1/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-3c064bed.js |only visachartR-1.1.1/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-4plkz3vm.entry.js |only visachartR-1.1.1/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-axfe6fa3.system.entry.js |only visachartR-1.1.1/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-bae7bff7.system.js |only visachartR-1.1.1/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-iwlpooei.system.entry.js |only visachartR-1.1.1/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-jirbgsep.entry.js |only visachartR-1.1.1/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-mtg4ssdd.system.entry.js |only visachartR-1.1.1/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-s7f2ithl.entry.js |only visachartR-1.1.1/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-unxffg0f.system.entry.js |only visachartR-1.1.1/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-uvnq63th.entry.js |only visachartR-2.0.0/visachartR/DESCRIPTION | 8 +- visachartR-2.0.0/visachartR/MD5 | 34 ++++------ visachartR-2.0.0/visachartR/NEWS.md | 9 ++ visachartR-2.0.0/visachartR/README.md | 4 - visachartR-2.0.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/charts.esm.js | 2 visachartR-2.0.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-4xkvlglo.entry.js |only visachartR-2.0.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-50ea2036.system.js | 2 visachartR-2.0.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-523b8807.system.js |only visachartR-2.0.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-62f65a7a.js |only visachartR-2.0.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-9epcaw1q.entry.js |only visachartR-2.0.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-f74220da.system.js | 2 visachartR-2.0.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-lwdo8skm.system.entry.js |only visachartR-2.0.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-rwyc923x.entry.js |only visachartR-2.0.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-ydqo0bqu.system.entry.js |only visachartR-2.0.0/visachartR/inst/htmlwidgets/lib/visa-chart-components/p-yylcr8q3.system.entry.js |only visachartR-2.0.0/visachartR/inst/htmlwidgets/visaChart.yaml | 2 visachartR-2.0.0/visachartR/inst/htmlwidgets/visaNodeLinkChart.yaml | 2 27 files changed, 35 insertions(+), 30 deletions(-)
Title: The Exterior Calculus
Description: Provides functionality for working with tensors, alternating
tensors, wedge products, Stokes's theorem, and related concepts
from the exterior calculus. Functionality for Grassman algebra
is provided. The canonical reference would be:
M. Spivak (1965, ISBN:0-8053-9021-9) "Calculus on Manifolds".
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between stokes versions 1.0-9 dated 2021-11-16 and 1.1-1 dated 2022-01-05
stokes-1.0-9/stokes/inst/stokes_stickermaker.R |only stokes-1.0-9/stokes/inst/stokes_theorem.pdf |only stokes-1.0-9/stokes/inst/stokes_theorem.png |only stokes-1.0-9/stokes/inst/stokes_theorem.tex |only stokes-1.1-1/stokes/DESCRIPTION | 26 ++---- stokes-1.1-1/stokes/MD5 | 105 ++++++++++++++++--------- stokes-1.1-1/stokes/NAMESPACE | 9 +- stokes-1.1-1/stokes/NEWS.md |only stokes-1.1-1/stokes/R/mult.R | 33 ++++++- stokes-1.1-1/stokes/R/ops.R | 11 +- stokes-1.1-1/stokes/R/print.R | 22 +++-- stokes-1.1-1/stokes/README.md | 97 +++++++++++------------ stokes-1.1-1/stokes/build/partial.rdb |binary stokes-1.1-1/stokes/build/stokes.pdf |binary stokes-1.1-1/stokes/build/vignette.rds |only stokes-1.1-1/stokes/inst/doc |only stokes-1.1-1/stokes/man/Alt.Rd | 33 ++++--- stokes-1.1-1/stokes/man/Ops.Rd | 52 ++++++++++-- stokes-1.1-1/stokes/man/as.1form.Rd | 27 ++++-- stokes-1.1-1/stokes/man/coeffs.Rd | 25 ++--- stokes-1.1-1/stokes/man/consolidate.Rd | 15 ++- stokes-1.1-1/stokes/man/contract.Rd | 46 ++++++++-- stokes-1.1-1/stokes/man/cross.Rd | 22 +++-- stokes-1.1-1/stokes/man/hodge.Rd | 27 ++++-- stokes-1.1-1/stokes/man/inner.Rd | 22 ++++- stokes-1.1-1/stokes/man/issmall.Rd | 18 ++-- stokes-1.1-1/stokes/man/keep.Rd | 14 +-- stokes-1.1-1/stokes/man/kform.Rd | 51 ++++++++---- stokes-1.1-1/stokes/man/ktensor.Rd | 59 +++++++++++--- stokes-1.1-1/stokes/man/print.Rd | 52 ++++++++---- stokes-1.1-1/stokes/man/rform.Rd | 26 +++--- stokes-1.1-1/stokes/man/scalar.Rd | 38 +++++---- stokes-1.1-1/stokes/man/stokes-package.Rd | 63 ++++++++++++--- stokes-1.1-1/stokes/man/symbolic.Rd | 20 ++-- stokes-1.1-1/stokes/man/transform.Rd | 37 ++++++++ stokes-1.1-1/stokes/man/volume.Rd | 29 ++++-- stokes-1.1-1/stokes/man/wedge.Rd | 28 +++++- stokes-1.1-1/stokes/man/zap.Rd | 14 +-- stokes-1.1-1/stokes/man/zero.Rd | 31 ++++--- stokes-1.1-1/stokes/tests |only stokes-1.1-1/stokes/vignettes |only 41 files changed, 716 insertions(+), 336 deletions(-)
Title: Functions for Diffusing Function Documentations into 'Roxygen'
Comments
Description: Efficient diffusing of content across function documentations. Sections, parameters or dot parameters are extracted from function documentations and turned into valid Rd character strings, which are ready to diffuse into the 'roxygen' comments of another function by inserting inline code.
Author: Xiurui Zhu [aut, cre]
Maintainer: Xiurui Zhu <zxr6@163.com>
Diff between roclang versions 0.1.2 dated 2021-10-20 and 0.1.3 dated 2022-01-05
DESCRIPTION | 6 MD5 | 8 - NEWS.md | 79 ++++++----- README.md | 8 - tests/testthat/test-extract_roc_text.R | 222 ++++++++++++++++----------------- 5 files changed, 166 insertions(+), 157 deletions(-)
Title: Robust Inference for Absolute Abundance in Microbiome Analysis
Description: A novel approach to make inference on the association of covariates with the absolute abundance (AA) of 'microbiome' in an ecosystem. It can be also directly applied to relative abundance (RA) data to make inference on AA (even if AA data is not available) because the ratio of two RA is equal ratio of their AA. This algorithm can estimate and test the associations of interest while adjusting for potential 'confounders'. The estimates of this method have easy interpretation like a typical regression analysis. High-dimensional covariates are handled with regularization and it is implemented by parallel computing. This algorithm finds optimal reference 'taxa/OTU (Operational Taxonomic Unit)/ASV (Amplicon Sequence Bariant)' and uses permutation to control FDR (False Discovery Rate).
Author: Quran Wu [aut],
Zhigang Li [aut, cre]
Maintainer: Zhigang Li <zhigang.li@ufl.edu>
Diff between IFAA versions 1.0.3 dated 2021-11-08 and 1.0.4 dated 2022-01-05
DESCRIPTION | 8 - MD5 | 44 ++++----- NAMESPACE | 2 NEWS.md | 6 + R/AIcalculation.R | 2 R/IFAAfunc.R | 9 + R/MZILN.R | 3 R/Regulariz_MZILN.R | 12 ++ R/bootResuHDCI.R | 124 +++++++++++++------------- R/dataInfo.R | 9 + R/dataRecovTrans.R | 8 - R/originDataScreen.R | 30 ++---- R/regulariz.R | 237 ++++++++++++--------------------------------------- R/runGlmnet.R | 208 ++++++++++++++++++++++---------------------- R/runScrParal.R | 50 ++++++---- R/runlinear.R | 6 - build/IFAA.pdf |binary inst/doc/IFAA.R | 2 inst/doc/IFAA.Rmd | 10 +- inst/doc/IFAA.html | 50 ++++------ man/IFAA.Rd | 7 - man/MZILN.Rd | 4 vignettes/IFAA.Rmd | 10 +- 23 files changed, 376 insertions(+), 465 deletions(-)
Title: Tidy Model Stacking
Description: Model stacking is an ensemble technique
that involves training a model to combine the outputs of many
diverse statistical models, and has been shown to improve
predictive performance in a variety of settings. 'stacks'
implements a grammar for 'tidymodels'-aligned model stacking.
Author: Simon Couch [aut, cre],
Max Kuhn [aut],
RStudio [cph]
Maintainer: Simon Couch <simonpatrickcouch@gmail.com>
Diff between stacks versions 0.2.1 dated 2021-07-23 and 0.2.2 dated 2022-01-05
DESCRIPTION | 19 ++--- MD5 | 62 ++++++++-------- NEWS.md | 10 ++ R/add_candidates.R | 7 + R/collect_parameters.R | 25 +++++- R/fit_members.R | 3 R/predict.R | 3 README.md | 2 build/partial.rdb |binary data/class_folds.rda |binary data/class_res_nn.rda |binary data/class_res_rf.rda |binary data/log_res_nn.rda |binary data/log_res_rf.rda |binary data/reg_folds.rda |binary data/reg_res_lr.rda |binary data/reg_res_sp.rda |binary data/reg_res_svm.rda |binary data/tree_frogs_class_test.rda |binary data/tree_frogs_reg_test.rda |binary inst/doc/basics.html | 100 +++++++++++++-------------- inst/doc/classification.html | 60 +++++++--------- man/example_data.Rd | 2 man/stacks_description.Rd | 6 - tests/testthat/out/data_stack_class.txt | 4 - tests/testthat/out/model_stack_class.txt | 30 +++----- tests/testthat/out/model_stack_class_fit.txt | 30 +++----- tests/testthat/out/model_stack_log.txt | 13 +-- tests/testthat/out/model_stack_log_fit.txt | 13 +-- tests/testthat/out/model_stack_reg.txt | 11 +- tests/testthat/out/model_stack_reg_fit.txt | 11 +- tests/testthat/test_collect_parameters.R | 6 - 32 files changed, 215 insertions(+), 202 deletions(-)
Title: Estimation of Spatial Autoregressive Models with and without
Heteroskedastic Innovations
Description: Functions for fitting Cliff-Ord-type spatial autoregressive models with and without heteroskedastic innovations using Generalized Method of Moments estimation are provided. Some support is available for fitting spatial HAC models, and for fitting with non-spatial endogeneous variables using instrumental variables.
Author: Gianfranco Piras [aut, cre] (<https://orcid.org/0000-0003-0225-6061>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>)
Maintainer: Gianfranco Piras <gpiras@mac.com>
Diff between sphet versions 1.7 dated 2018-03-16 and 2.0 dated 2022-01-05
sphet-1.7/sphet/ChangeLog |only sphet-1.7/sphet/data/knn10columbus.txt.gz |only sphet-1.7/sphet/man/dist_functions.Rd |only sphet-1.7/sphet/man/kernel.Rd |only sphet-2.0/sphet/DESCRIPTION | 25 sphet-2.0/sphet/MD5 | 95 - sphet-2.0/sphet/NAMESPACE | 66 sphet-2.0/sphet/R/attmps.R |only sphet-2.0/sphet/R/check_imacts_trace_formula.R |only sphet-2.0/sphet/R/circular.R | 34 sphet-2.0/sphet/R/coldis.R |only sphet-2.0/sphet/R/dist_functions.R | 4 sphet-2.0/sphet/R/distance.R | 67 sphet-2.0/sphet/R/gm_functions.R | 292 +-- sphet-2.0/sphet/R/gs2slshet.R | 114 + sphet-2.0/sphet/R/gwt2dist.R | 29 sphet-2.0/sphet/R/hidden_functions.R |only sphet-2.0/sphet/R/hidden_functions_2.R |only sphet-2.0/sphet/R/impacts.R |only sphet-2.0/sphet/R/ivreg.R | 74 sphet-2.0/sphet/R/kernelsfun.R | 44 sphet-2.0/sphet/R/kpjtest.R |only sphet-2.0/sphet/R/listw2dgCMatrix.R | 19 sphet-2.0/sphet/R/s2slshac.R | 93 + sphet-2.0/sphet/R/spreg.R | 602 ++----- sphet-2.0/sphet/R/spreg_old.R |only sphet-2.0/sphet/R/summary.impacts.sphet.R |only sphet-2.0/sphet/R/summary.impacts.sphet_2.R |only sphet-2.0/sphet/R/summary.impacts.sphet_orig.R |only sphet-2.0/sphet/R/summary.sphet.R | 114 + sphet-2.0/sphet/R/twostagels.R | 5 sphet-2.0/sphet/R/utilities.R | 26 sphet-2.0/sphet/R/vc_impacts_formula.R |only sphet-2.0/sphet/README.md |only sphet-2.0/sphet/build/partial.rdb |only sphet-2.0/sphet/build/vignette.rds |binary sphet-2.0/sphet/data/coldis.RData |only sphet-2.0/sphet/data/knn10columbus.txt |only sphet-2.0/sphet/inst/CITATION | 25 sphet-2.0/sphet/inst/doc/sphet.R | 52 sphet-2.0/sphet/inst/doc/sphet.Rnw | 2017 ++++++++++++------------- sphet-2.0/sphet/inst/doc/sphet.pdf |binary sphet-2.0/sphet/man/circular.Rd | 36 sphet-2.0/sphet/man/coldis.Rd | 25 sphet-2.0/sphet/man/distance.Rd | 107 - sphet-2.0/sphet/man/gstslshet.Rd | 151 - sphet-2.0/sphet/man/impacts.Rd |only sphet-2.0/sphet/man/impacts.error_sphet.Rd |only sphet-2.0/sphet/man/impacts.gstsls.Rd |only sphet-2.0/sphet/man/impacts.ols_sphet.Rd |only sphet-2.0/sphet/man/impacts.stsls_sphet.Rd |only sphet-2.0/sphet/man/kpjtest.Rd |only sphet-2.0/sphet/man/listw2dgCMatrix.Rd | 37 sphet-2.0/sphet/man/print.sphet.Rd | 43 sphet-2.0/sphet/man/print.summary.sphet.Rd |only sphet-2.0/sphet/man/read.gwt2dist.Rd | 53 sphet-2.0/sphet/man/sphet.Rd | 14 sphet-2.0/sphet/man/spreg.Rd | 242 +- sphet-2.0/sphet/man/stslshac.Rd | 143 - sphet-2.0/sphet/man/summary.sphet.Rd | 41 sphet-2.0/sphet/man/utilities.Rd | 21 sphet-2.0/sphet/vignettes/sphet.Rnw | 2017 ++++++++++++------------- 62 files changed, 3576 insertions(+), 3151 deletions(-)
Title: R Commander
Description: A platform-independent basic-statistics GUI (graphical user interface) for R, based on the tcltk package.
Author: John Fox [aut, cre],
Milan Bouchet-Valat [aut],
Liviu Andronic [ctb],
Michael Ash [ctb],
Theophilius Boye [ctb],
Stefano Calza [ctb],
Andy Chang [ctb],
Vilmantas Gegzna [ctb],
Philippe Grosjean [ctb],
Richard Heiberger [ctb],
Kosar Karimi Pour [ctb],
G. Jay Kerns [ctb],
Renaud Lancelot [ctb],
Matthieu Lesnoff [ctb],
Uwe Ligges [ctb],
Samir Messad [ctb],
Martin Maechler [ctb],
Robert Muenchen [ctb],
Duncan Murdoch [ctb],
Erich Neuwirth [ctb],
Dan Putler [ctb],
Brian Ripley [ctb],
Miroslav Ristic [ctb],
Peter Wolf [ctb],
Kevin Wright [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between Rcmdr versions 2.7-1 dated 2020-10-07 and 2.7-2 dated 2022-01-05
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++++----- NEWS | 4 ++++ build |only inst/CITATION | 4 ++-- inst/doc/Getting-Started-with-the-Rcmdr.R |only inst/doc/Getting-Started-with-the-Rcmdr.Rnw |only inst/doc/Getting-Started-with-the-Rcmdr.pdf |binary man/Rcmdr-package.Rd | 6 +++--- 9 files changed, 22 insertions(+), 14 deletions(-)
Title: Permutation Testing in High-Dimensional Linear Models
Description: Provides permutation methods for testing in high-dimensional linear models.
The tests are often robust against heteroscedasticity and non-normality
and usually perform well under anti-sparsity.
See Hemerik, Thoresen and Finos (2021) <doi:10.1080/00949655.2020.1836183>.
Author: Jesse Hemerik, Livio Finos
Maintainer: Jesse Hemerik <jesse.hemerik@wur.nl>
Diff between phd versions 0.1 dated 2019-07-02 and 0.2 dated 2022-01-05
DESCRIPTION | 13 ++++++------- MD5 | 2 +- 2 files changed, 7 insertions(+), 8 deletions(-)
Title: Discriminating Probes Selection
Description: Set of tools for molecular probes selection and design of a microarray, e.g. the assessment of physical and chemical properties, blast performance, selection according to sensitivity and selectivity. Methods used in package are described in: Lorenz R., Stephan H.B., Höner zu Siederdissen C. et al. (2011) <doi:10.1186/1748-7188-6-26>; Camacho C., Coulouris G., Avagyan V. et al. (2009) <doi:10.1186/1471-2105-10-421>.
Author: Elena Filatova [aut, cre] (<https://orcid.org/0000-0002-6683-7191>),
Oleg Utkin [ctb] (<https://orcid.org/0000-0002-7571-525X>),
Blokhina Scientific Research Institute of Epidemiology and Microbiology
of Nizhny Novgorod, Russia [fnd]
Maintainer: Elena Filatova <filatova@nniiem.ru>
Diff between disprose versions 0.1.2 dated 2022-01-03 and 0.1.3 dated 2022-01-05
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/downloads.R | 17 +++++++++++------ R/probes.R | 3 ++- 5 files changed, 24 insertions(+), 14 deletions(-)
Title: Companion to Applied Regression Data Sets
Description: Datasets to Accompany J. Fox and S. Weisberg,
An R Companion to Applied Regression, Third Edition, Sage (2019).
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Brad Price [aut]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between carData versions 3.0-4 dated 2020-05-22 and 3.0-5 dated 2022-01-05
carData-3.0-4/carData/data/datalist |only carData-3.0-5/carData/DESCRIPTION | 15 +- carData-3.0-5/carData/MD5 | 146 ++++++++++++------------ carData-3.0-5/carData/NEWS | 4 carData-3.0-5/carData/build |only carData-3.0-5/carData/data/AMSsurvey.rda |binary carData-3.0-5/carData/data/Adler.rda |binary carData-3.0-5/carData/data/Angell.rda |binary carData-3.0-5/carData/data/Anscombe.rda |binary carData-3.0-5/carData/data/Arrests.rda |binary carData-3.0-5/carData/data/BEPS.rda |binary carData-3.0-5/carData/data/Baumann.rda |binary carData-3.0-5/carData/data/Bfox.rda |binary carData-3.0-5/carData/data/Blackmore.rda |binary carData-3.0-5/carData/data/Burt.rda |binary carData-3.0-5/carData/data/CES11.rda |binary carData-3.0-5/carData/data/CanPop.rda |binary carData-3.0-5/carData/data/Chile.rda |binary carData-3.0-5/carData/data/Chirot.rda |binary carData-3.0-5/carData/data/Cowles.rda |binary carData-3.0-5/carData/data/Davis.rda |binary carData-3.0-5/carData/data/DavisThin.rda |binary carData-3.0-5/carData/data/Depredations.rda |binary carData-3.0-5/carData/data/Duncan.rda |binary carData-3.0-5/carData/data/Ericksen.rda |binary carData-3.0-5/carData/data/Florida.rda |binary carData-3.0-5/carData/data/Freedman.rda |binary carData-3.0-5/carData/data/Friendly.rda |binary carData-3.0-5/carData/data/GSSvocab.rda |binary carData-3.0-5/carData/data/Ginzberg.rda |binary carData-3.0-5/carData/data/Greene.rda |binary carData-3.0-5/carData/data/Guyer.rda |binary carData-3.0-5/carData/data/Hartnagel.rda |binary carData-3.0-5/carData/data/Highway1.rda |binary carData-3.0-5/carData/data/KosteckiDillon.rda |binary carData-3.0-5/carData/data/Leinhardt.rda |binary carData-3.0-5/carData/data/LoBD.rda |binary carData-3.0-5/carData/data/Mandel.rda |binary carData-3.0-5/carData/data/Migration.rda |binary carData-3.0-5/carData/data/Moore.rda |binary carData-3.0-5/carData/data/MplsDemo.rda |binary carData-3.0-5/carData/data/MplsStops.rda |binary carData-3.0-5/carData/data/Mroz.rda |binary carData-3.0-5/carData/data/OBrienKaiser.rda |binary carData-3.0-5/carData/data/OBrienKaiserLong.rda |binary carData-3.0-5/carData/data/Ornstein.rda |binary carData-3.0-5/carData/data/Pottery.rda |binary carData-3.0-5/carData/data/Prestige.rda |binary carData-3.0-5/carData/data/Quartet.rda |binary carData-3.0-5/carData/data/Robey.rda |binary carData-3.0-5/carData/data/Rossi.rda |binary carData-3.0-5/carData/data/SLID.rda |binary carData-3.0-5/carData/data/Sahlins.rda |binary carData-3.0-5/carData/data/Salaries.rda |binary carData-3.0-5/carData/data/Soils.rda |binary carData-3.0-5/carData/data/States.rda |binary carData-3.0-5/carData/data/TitanicSurvival.rda |binary carData-3.0-5/carData/data/Transact.rda |binary carData-3.0-5/carData/data/UN.rda |binary carData-3.0-5/carData/data/UN98.rda |binary carData-3.0-5/carData/data/USPop.rda |binary carData-3.0-5/carData/data/Vocab.rda |binary carData-3.0-5/carData/data/WVS.rda |binary carData-3.0-5/carData/data/WeightLoss.rda |binary carData-3.0-5/carData/data/Wells.rda |binary carData-3.0-5/carData/data/Womenlf.rda |binary carData-3.0-5/carData/data/Wong.rda |binary carData-3.0-5/carData/data/Wool.rda |binary carData-3.0-5/carData/man/AMSsurvey.Rd | 2 carData-3.0-5/carData/man/CanPop.Rd | 4 carData-3.0-5/carData/man/Depredations.Rd | 2 carData-3.0-5/carData/man/LoBD.Rd | 118 +++++++++---------- carData-3.0-5/carData/man/Soils.Rd | 118 +++++++++---------- carData-3.0-5/carData/man/TitanicSurvival.Rd | 86 +++++++------- carData-3.0-5/carData/man/USPop.Rd | 2 75 files changed, 251 insertions(+), 246 deletions(-)
Title: Statistical Tools for Topological Data Analysis
Description: Tools for the statistical analysis of persistent homology and for
density clustering. For that, this package provides an R interface for the
efficient algorithms of the C++ libraries 'GUDHI' <https://project.inria.fr/gudhi/software/>, 'Dionysus' <https://www.mrzv.org/software/dionysus/>, and 'PHAT' <https://bitbucket.org/phat-code/phat/>. This package also implements the methods in Fasy et al. (2014) and Chazal et al. (2014) <doi:10.1145/2582112.2582128> for analyzing the statistical significance of persistent homology features.
Author: Brittany T. Fasy, Jisu Kim, Fabrizio Lecci, Clement Maria,
David L. Millman, Vincent Rouvreau.
Maintainer: Jisu Kim <jisu.kim@inria.fr>
Diff between TDA versions 1.7.7 dated 2021-03-30 and 1.8.2 dated 2022-01-05
DESCRIPTION | 12 MD5 | 30 NEWS | 9 R/print.clusterTree.R | 1 build/vignette.rds |binary inst/doc/article.R | 1226 +++++++++++++------------- inst/doc/article.pdf |binary man/TDA-package.Rd | 4 man/alphaComplexDiag.Rd | 2 man/alphaComplexFiltration.Rd | 2 src/RcppExports.cpp | 5 src/boost/container/detail/copy_move_algo.hpp | 140 +- src/boost/container/detail/flat_tree.hpp | 208 ++-- src/boost/container/flat_map.hpp | 412 +++++--- src/boost/container/vector.hpp | 303 +++--- src/boost/serialization/binary_object.hpp | 8 16 files changed, 1285 insertions(+), 1077 deletions(-)
Title: Vectorised Probability Distributions
Description: Vectorised distribution objects with tools for manipulating,
visualising, and using probability distributions. Designed to allow model
prediction outputs to return distributions rather than their parameters,
allowing users to directly interact with predictive distributions in a
data-oriented workflow. In addition to providing generic replacements for
p/d/q/r functions, other useful statistics can be computed including means,
variances, intervals, and highest density regions.
Author: Mitchell O'Hara-Wild [aut, cre]
(<https://orcid.org/0000-0001-6729-7695>),
Matthew Kay [aut] (<https://orcid.org/0000-0001-9446-0419>),
Alex Hayes [aut] (<https://orcid.org/0000-0002-4985-5160>),
Earo Wang [ctb] (<https://orcid.org/0000-0001-6448-5260>)
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between distributional versions 0.2.2 dated 2021-02-02 and 0.3.0 dated 2022-01-05
DESCRIPTION | 29 +- MD5 | 187 ++++++++++-------- NAMESPACE | 150 ++++++++------ NEWS.md | 65 ++++++ R/default.R | 197 ++++++++++++++++++- R/dist_bernoulli.R | 11 - R/dist_beta.R | 7 R/dist_binomial.R | 11 - R/dist_burr.R | 23 +- R/dist_categorical.R |only R/dist_cauchy.R | 7 R/dist_chisq.R | 7 R/dist_degenerate.R | 8 R/dist_exponential.R | 7 R/dist_f.R | 7 R/dist_gamma.R | 7 R/dist_geometric.R | 7 R/dist_gumbel.R | 12 - R/dist_hypergeometric.R | 7 R/dist_inverse_exponential.R | 23 +- R/dist_inverse_gamma.R | 23 +- R/dist_inverse_gaussian.R | 23 +- R/dist_logarithmic.R | 22 +- R/dist_logistic.R | 7 R/dist_lognormal.R |only R/dist_missing.R | 2 R/dist_multinomial.R | 16 - R/dist_multivariate_normal.R | 53 +++-- R/dist_negative_binomial.R | 8 R/dist_normal.R | 19 + R/dist_pareto.R | 23 +- R/dist_percentile.R | 5 R/dist_poisson.R | 9 R/dist_poisson_inverse_gaussian.R | 23 +- R/dist_sample.R | 110 +++++++--- R/dist_student_t.R | 7 R/dist_studentized_range.R | 5 R/dist_uniform.R | 7 R/dist_weibull.R | 7 R/dist_wrap.R | 73 ++++--- R/distribution.R | 202 +++++++++++++++----- R/hdr.R | 40 +++ R/hilo.R | 46 +++- R/inflated.R | 19 + R/mixture.R | 2 R/plot.R | 49 ---- R/support.R |only R/transformed.R | 23 +- R/utils.R | 108 +++++++++- README.md | 30 +- build/distributional.pdf |binary man/autoplot.distribution.Rd | 29 -- man/covariance.Rd |only man/covariance.distribution.Rd |only man/dist_burr.Rd | 16 + man/dist_categorical.Rd |only man/dist_gumbel.Rd | 7 man/dist_inverse_exponential.Rd | 16 + man/dist_inverse_gamma.Rd | 16 + man/dist_inverse_gaussian.Rd | 16 + man/dist_logarithmic.Rd | 16 + man/dist_lognormal.Rd |only man/dist_multinomial.Rd | 10 man/dist_multivariate_normal.Rd | 19 + man/dist_negative_binomial.Rd | 1 man/dist_normal.Rd | 4 man/dist_pareto.Rd | 16 + man/dist_poisson_inverse_gaussian.Rd | 16 + man/dist_sample.Rd | 22 ++ man/dist_wrap.Rd | 6 man/distributional-package.Rd | 10 man/family.distribution.Rd |only man/hilo.Rd | 14 + man/likelihood.Rd | 3 man/new_hdr.Rd | 16 + man/new_support_region.Rd |only man/parameters.Rd |only man/scale_hilo_continuous.Rd | 15 - man/scale_level.Rd | 18 + man/support.Rd |only man/variance.Rd | 21 +- tests/testthat/Rplots.pdf |binary tests/testthat/test-apply.R |only tests/testthat/test-dist-bernoulli.R | 4 tests/testthat/test-dist-burr.R | 20 + tests/testthat/test-dist-gumbel.R | 19 + tests/testthat/test-dist-inverse-exponential.R | 15 - tests/testthat/test-dist-inverse-gamma.R | 17 + tests/testthat/test-dist-inverse-gaussian.R | 19 + tests/testthat/test-dist-logarithmic.R | 15 - tests/testthat/test-dist-multinomial.R | 12 - tests/testthat/test-dist-multivariate-normal.R | 23 +- tests/testthat/test-dist-normal.R | 2 tests/testthat/test-dist-pareto.R | 19 + tests/testthat/test-dist-poisson-inverse-gaussian.R | 15 - tests/testthat/test-dist-sample.R | 2 tests/testthat/test-dist_categorical.R |only tests/testthat/test-dist_lognormal.R |only tests/testthat/test-distribution.R | 13 + tests/testthat/test-graphics.R | 48 ---- tests/testthat/test-issues.R |only tests/testthat/test-transformations.R | 94 ++++++--- 102 files changed, 1592 insertions(+), 785 deletions(-)
More information about distributional at CRAN
Permanent link
Title: The Free Algebra
Description: The free algebra in R; multivariate polynomials with non-commuting indeterminates.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between freealg versions 1.0-3 dated 2021-11-19 and 1.0-4 dated 2022-01-05
DESCRIPTION | 9 ++-- MD5 | 30 +++++++------ NAMESPACE | 3 + R/dot.R |only R/free.R | 31 ++++++++++++-- README.md | 2 build/freealg.pdf |binary build/partial.rdb |binary data |only inst/doc/freealg.pdf |binary inst/dot.Rmd |only inst/freealg_matrix.Rmd | 50 +++++++++++++++++++++++ man/deriv.Rd | 99 ++++++++++++++++++++++++++++++---------------- man/dot.Rd |only man/freealg.Rd | 25 +++++++++-- man/print.Rd | 6 ++ src/free.cpp | 22 ++++++---- tests/testthat/test_aaa.R | 3 - 18 files changed, 207 insertions(+), 73 deletions(-)
Title: Bayesian Model for CACE Analysis
Description: Performs CACE (Complier Average Causal Effect analysis) on either a single study or meta-analysis of datasets with binary outcomes, using either complete or incomplete noncompliance information. Our package implements the Bayesian methods proposed in Zhou et al. (2019) <doi:10.1111/biom.13028>, which introduces a Bayesian hierarchical model for estimating CACE in meta-analysis of clinical trials with noncompliance, and Zhou et al. (2021) <doi:10.1080/01621459.2021.1900859>, with an application example on Epidural Analgesia.
Author: Jinhui Yang [aut, cre] (<https://orcid.org/0000-0001-8322-1121>),
Jincheng Zhou [aut] (<https://orcid.org/0000-0003-2641-2495>),
James Hodges [ctb],
Haitao Chu [ctb] (<https://orcid.org/0000-0003-0932-598X>)
Maintainer: Jinhui Yang <james.yangjinhui@gmail.com>
Diff between BayesCACE versions 1.0 dated 2021-11-08 and 1.1 dated 2022-01-05
BayesCACE-1.0/BayesCACE/R/fun_coda_dic.R |only BayesCACE-1.0/BayesCACE/R/prior.meta.c.R |only BayesCACE-1.0/BayesCACE/README.md |only BayesCACE-1.0/BayesCACE/man/plt.cacebayes.Rd |only BayesCACE-1.1/BayesCACE/DESCRIPTION | 17 - BayesCACE-1.1/BayesCACE/MD5 | 75 +++--- BayesCACE-1.1/BayesCACE/NAMESPACE | 4 BayesCACE-1.1/BayesCACE/R/cace.meta.c.R | 152 ++++++------ BayesCACE-1.1/BayesCACE/R/cace.meta.ic.R | 126 ++++++---- BayesCACE-1.1/BayesCACE/R/cace.study.R | 97 +++----- BayesCACE-1.1/BayesCACE/R/epidural_c-data.R | 5 BayesCACE-1.1/BayesCACE/R/epidural_ic-data.R | 5 BayesCACE-1.1/BayesCACE/R/fun.coda.dic.R |only BayesCACE-1.1/BayesCACE/R/model.meta.c.R | 225 +++++------------- BayesCACE-1.1/BayesCACE/R/model.meta.ic.R | 289 ++++++++---------------- BayesCACE-1.1/BayesCACE/R/model.study.R | 90 +++---- BayesCACE-1.1/BayesCACE/R/plt.cacebayes.R | 233 +++++++++++++------ BayesCACE-1.1/BayesCACE/R/plt.forest.R | 19 - BayesCACE-1.1/BayesCACE/R/plt.noncomp.R | 10 BayesCACE-1.1/BayesCACE/R/prior.meta.R |only BayesCACE-1.1/BayesCACE/R/prior.study.R | 53 +++- BayesCACE-1.1/BayesCACE/build/partial.rdb |binary BayesCACE-1.1/BayesCACE/build/vignette.rds |only BayesCACE-1.1/BayesCACE/inst/REFERENCES.bib | 25 +- BayesCACE-1.1/BayesCACE/inst/doc |only BayesCACE-1.1/BayesCACE/man/cace.meta.c.Rd | 109 ++++----- BayesCACE-1.1/BayesCACE/man/cace.meta.ic.Rd | 95 ++++--- BayesCACE-1.1/BayesCACE/man/cace.study.Rd | 84 ++---- BayesCACE-1.1/BayesCACE/man/coda.names.Rd | 5 BayesCACE-1.1/BayesCACE/man/coda.samples.dic.Rd | 16 - BayesCACE-1.1/BayesCACE/man/epidural_c.Rd | 4 BayesCACE-1.1/BayesCACE/man/epidural_ic.Rd | 4 BayesCACE-1.1/BayesCACE/man/model.meta.c.Rd | 34 ++ BayesCACE-1.1/BayesCACE/man/model.meta.ic.Rd | 32 ++ BayesCACE-1.1/BayesCACE/man/model.study.Rd | 16 - BayesCACE-1.1/BayesCACE/man/parse.varname.Rd | 5 BayesCACE-1.1/BayesCACE/man/plt.acf.Rd |only BayesCACE-1.1/BayesCACE/man/plt.density.Rd |only BayesCACE-1.1/BayesCACE/man/plt.forest.Rd | 13 - BayesCACE-1.1/BayesCACE/man/plt.noncomp.Rd | 9 BayesCACE-1.1/BayesCACE/man/plt.trace.Rd |only BayesCACE-1.1/BayesCACE/man/prior.meta.Rd | 34 ++ BayesCACE-1.1/BayesCACE/man/prior.study.Rd | 14 - BayesCACE-1.1/BayesCACE/vignettes |only 44 files changed, 941 insertions(+), 958 deletions(-)
Title: 64-Bit Extension of the SPArse Matrix R Package 'spam'
Description: Provides the Fortran code of the R package 'spam'
with 64-bit integers. Loading this package together with the R package
spam enables the sparse matrix class spam to handle huge sparse matrices
with more than 2^31-1 non-zero elements.
Documentation is provided in Gerber, Moesinger and Furrer (2017) <doi:10.1016/j.cageo.2016.11.015>.
Author: Reinhard Furrer [aut, cre] (<https://orcid.org/0000-0002-6319-2332>),
Florian Gerber [aut] (<https://orcid.org/0000-0001-8545-5263>),
Roman Flury [aut] (<https://orcid.org/0000-0002-0349-8698>),
Daniel Gerber [ctb],
Kaspar Moesinger [ctb],
Youcef Saad [ctb] (SPARSEKIT
http://www-users.cs.umn.edu/~saad/software/SPARSKIT/),
Esmond G. Ng [ctb] (Fortran Cholesky routines),
Barry W. Peyton [ctb] (Fortran Cholesky routines),
Joseph W.H. Liu [ctb] (Fortran Cholesky routines),
Alan D. George [ctb] (Fortran Cholesky routines),
Lehoucq B. Rich [ctb] (ARPACK),
Maschhoff Kristi [ctb] (ARPACK),
Sorensen C. Danny [ctb] (ARPACK),
Yang Chao [ctb] (ARPACK)
Maintainer: Reinhard Furrer <reinhard.furrer@math.uzh.ch>
Diff between spam64 versions 2.7-0 dated 2021-06-25 and 2.8-0 dated 2022-01-05
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- inst/CITATION | 28 +++++++++++++--------------- man/spam64-package.Rd | 29 ++++++++++++++++------------- 4 files changed, 37 insertions(+), 36 deletions(-)
Title: R Commander Plug-in for the 'survival' Package
Description: An R Commander plug-in for the survival
package, with dialogs for Cox models, parametric survival regression models,
estimation of survival curves, and testing for differences in survival
curves, along with data-management facilities and a variety of tests,
diagnostics and graphs.
Author: John Fox
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between RcmdrPlugin.survival versions 1.2-1 dated 2019-12-08 and 1.2-2 dated 2022-01-05
DESCRIPTION | 12 - MD5 | 27 ++-- NEWS | 6 R/diagnostics.R | 221 ++++++++++++++++++------------------ build |only data/Dialysis.rda |binary data/Rossi.rda |binary inst/CITATION | 40 +++--- man/Dialysis.Rd | 84 ++++++------- man/RcmdrPlugin.survival-package.Rd | 106 ++++++++--------- man/Rossi.Rd | 206 ++++++++++++++++----------------- man/SurvivalData.Rd | 56 ++++----- man/Unfold-dialog.Rd | 80 ++++++------- man/plot.coxph.Rd | 136 +++++++++++----------- man/unfold.Rd | 136 +++++++++++----------- 15 files changed, 562 insertions(+), 548 deletions(-)
More information about RcmdrPlugin.survival at CRAN
Permanent link
Title: R Commander Miscellaneous Functions
Description: Various statistical, graphics, and data-management functions used by the Rcmdr package in the R Commander GUI for R.
Author: John Fox [aut, cre],
Robert Muenchen [ctb],
Dan Putler [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between RcmdrMisc versions 2.7-1 dated 2020-08-13 and 2.7-2 dated 2022-01-05
DESCRIPTION | 12 - MD5 | 16 - NEWS | 245 ++++++++++++++------------ R/Barplot.R | 158 ++++++++--------- R/discretePlot.R | 92 +++++----- R/numSummary.R | 473 ++++++++++++++++++++++++++-------------------------- R/reshapeL2W.R | 99 +++++----- man/discretePlot.Rd | 117 ++++++------ man/reshapeL2W.Rd | 102 +++++------ 9 files changed, 671 insertions(+), 643 deletions(-)
Title: Import/Export Routines for 'MALDIquant'
Description: Functions for reading (tab, csv, Bruker fid, Ciphergen
XML, mzXML, mzML, imzML, Analyze 7.5, CDF, mMass MSD) and
writing (tab, csv, mMass MSD, mzML, imzML) different file
formats of mass spectrometry data into/from 'MALDIquant'
objects.
Author: Sebastian Gibb [aut, cre] (<https://orcid.org/0000-0001-7406-4443>),
Pietro Franceschi [ctb]
Maintainer: Sebastian Gibb <mail@sebastiangibb.de>
Diff between MALDIquantForeign versions 0.12 dated 2019-02-01 and 0.13 dated 2022-01-05
DESCRIPTION | 12 +- MD5 | 137 +++++++++++++++--------------- NEWS | 51 ++++++++++- R/AllGenerics.R | 39 +++----- R/MALDIquantForeign-parallel.R | 4 R/analyze-functions.R | 2 R/base64encode-functions.R | 2 R/compression-functions.R | 2 R/createMassObject-functions.R | 2 R/download-function.R | 2 R/export-functions.R | 2 R/export-methods.R | 24 ++--- R/exportImzMl-methods.R | 9 + R/exportMsd-methods.R | 2 R/exportMzMl-methods.R | 9 + R/exportTab-methods.R | 2 R/fileFormats.R | 4 R/filename-functions.R | 2 R/filename-methods.R | 2 R/ibd-functions.R | 2 R/import-functions.R | 28 +++--- R/importAnalyze-functions.R | 2 R/importAuto-functions.R | 2 R/importBrukerFlex-functions.R | 2 R/importCdf-functions.R | 2 R/importCiphergenXml-functions.R | 2 R/importImzMl-functions.R | 2 R/importMsd-functions.R | 2 R/importMzMl-functions.R | 2 R/importMzXml-functions.R | 2 R/importTab-functions.R | 10 +- R/imzMl-functions.R | 11 +- R/list.files-functions.R | 2 R/msd-functions.R | 2 R/msg-functions.R | 2 R/mzMl-functions.R | 7 + R/package.R | 6 - R/parseCiphergenXml.R | 4 R/parseMsd.R | 2 R/parseMzMl.R | 4 R/sanitize-functions.R | 2 R/testChecksum-functions.R | 2 R/uuid-functions.R | 4 R/xml-functions.R | 2 build/partial.rdb |only build/vignette.rds |binary inst/doc/MALDIquantForeign-intro.R | 30 +++--- inst/doc/MALDIquantForeign-intro.pdf |binary man/MALDIquantForeign-package.Rd | 4 man/MALDIquantForeign-parallel.Rd | 2 man/base64-encode.Rd | 8 + man/export-methods.Rd | 2 man/exportImzMl-methods.Rd | 8 - man/exportMsd-methods.Rd | 2 man/exportMzMl-methods.Rd | 8 - man/exportTab-methods.Rd | 2 man/import-functions.Rd | 19 +++- man/importAnalyze-functions.Rd | 2 man/importBrukerFlex-functions.Rd | 2 man/importCdf-functions.Rd | 2 man/importCiphergenXml-functions.Rd | 2 man/importImzMl-functions.Rd | 4 man/importMsd-functions.Rd | 2 man/importMzMl-functions.Rd | 4 man/importMzXml-functions.Rd | 4 man/importTab-functions.Rd | 2 man/supportedFileFormats-functions.Rd | 2 tests/testthat/test_exportImzMl-methods.R | 4 tests/testthat/test_importTab-functions.R | 6 + tests/testthat/test_mzMl-functions.R | 1 70 files changed, 312 insertions(+), 227 deletions(-)
More information about MALDIquantForeign at CRAN
Permanent link
Title: Hospital Data Analysis Workflow Tools
Description: Hospital data analysis workflow tools, modeling, and automations. This library
provides many useful tools to review common administrative hospital data. Some
of these include average length of stay, readmission rates, average net pay
amounts by service lines just to name a few. The aim is to provide a simple
and consistent verb framework that takes the guesswork out of everything.
Author: Steven Sanderson [aut, cre],
Steven Sanderson [cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between healthyR versions 0.1.6 dated 2021-08-20 and 0.1.7 dated 2022-01-05
DESCRIPTION | 12 +++++------ MD5 | 22 +++++++++++--------- NAMESPACE | 2 + NEWS.md | 12 +++++++++++ R/00_global_variables.R | 3 +- R/augment-service-line.R |only R/service-line-vec.R |only R/ts_median_excess_plt.R | 4 +-- inst/doc/getting-started.html | 16 +++++++------- inst/doc/kmeans-umap.html | 36 ++++++++++++++++----------------- man/figures/README-gartner_chart-1.png |binary man/service_line_augment.Rd |only man/service_line_vec.Rd |only man/ts_median_excess_plt.Rd | 4 +-- 14 files changed, 65 insertions(+), 46 deletions(-)
Title: Goodness-of-Fit Methods for Right-Censored Data
Description: Graphical tools and goodness-of-fit tests for right-censored data:
1. Kolmogorov-Smirnov, Crámer-von Mises, and Anderson-Darling tests
based on the empirical distribution function for complete data and their
extensions for right-censored data.
2. Generalized chi-squared-type tests based on the squared difference between
observed and expected counts using random cells with right-censored data.
3. A series of graphical tools such as probability or cumulative hazard
plots to guide the decision about the parametric model that best
fits the data.
Author: Klaus Langohr [aut, cre],
Mireia Besalú [aut],
Guadalupe Gómez [ctb]
Maintainer: Klaus Langohr <klaus.langohr@upc.edu>
Diff between GofCens versions 0.91 dated 2021-08-20 and 0.92 dated 2022-01-05
DESCRIPTION | 12 ++++++------ MD5 | 28 ++++++++++++++-------------- NAMESPACE | 4 ++-- R/KScens.R | 4 ++-- R/chisqcens1.R | 9 +++++---- R/chisqcens2.R | 32 ++++++++++++++++---------------- R/cumhazPlot.R | 13 +++++++++---- R/gofcens.R | 12 +++++++----- R/probPlot.R | 36 +++++++++++++++++++++--------------- man/GofCens-package.Rd | 4 ++-- man/KScens.Rd | 6 +++--- man/chisqcens2.Rd | 3 ++- man/cumhazPlot.Rd | 4 ++-- man/gofcens.Rd | 4 +++- man/probPlot.Rd | 6 ++++-- 15 files changed, 98 insertions(+), 79 deletions(-)
Title: Plot Shipboard DAS Data
Description: A utility program oriented to create maps, plot data, and do basic data summaries
of 'DAS' data <https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-305.PDF>
produced by 'WinCruz' from the Southwest Fisheries Science Center.
<https://www.fisheries.noaa.gov/west-coast/science-data/california-current-marine-mammal-assessment-program>.
Author: Sam Woodman [aut, cre] (<https://orcid.org/0000-0001-6071-8186>),
Tim Gerrodette [aut]
Maintainer: Sam Woodman <sam.woodman@noaa.gov>
Diff between CruzPlot versions 1.4.6 dated 2021-09-03 and 1.4.7 dated 2022-01-05
DESCRIPTION | 8 +-- MD5 | 18 ++++---- NEWS.md | 7 +++ inst/shiny/app.R | 18 ++++++-- inst/shiny/server_1_map/cruzMapPlannedTransects.R | 48 +++++++++++++++++++--- inst/shiny/server_1_map/cruzMapSave.R | 5 -- inst/shiny/server_files/server_reactiveValues.R | 39 ++++++++++++++++- inst/shiny/ui_files/ui_createMap.R | 2 inst/shiny/ui_files/ui_dasPlot.R | 6 +- inst/shiny/www/CruzPlot_Manual_app.pdf |binary 10 files changed, 119 insertions(+), 32 deletions(-)
Title: Spatial Stochastic Frontier Analysis
Description: Spatial Stochastic Frontier Analysis (SSFA) is an original method for controlling the spatial heterogeneity in Stochastic Frontier Analysis (SFA) models, for cross-sectional data, by splitting the inefficiency term into three terms: the first one related to spatial peculiarities of the territory in which each single unit operates, the second one related to the specific production features and the third one representing the error term.
Author: Elisa Fusco, Francesco Vidoli
Maintainer: Elisa Fusco <fusco_elisa@libero.it>
Diff between ssfa versions 1.1 dated 2015-06-09 and 1.2 dated 2022-01-05
DESCRIPTION | 10 - MD5 | 14 +- NAMESPACE | 12 +- NEWS | 19 ++- build/vignette.rds |binary inst/doc/ssfavignette.R | 273 ++++++++++++++++++++++------------------------ inst/doc/ssfavignette.pdf |binary man/ssfa-package.Rd | 56 ++++----- 8 files changed, 198 insertions(+), 186 deletions(-)
Title: Management Strategy Evaluation Toolkit
Description: Development, simulation testing, and implementation of management procedures for fisheries
(see Carruthers & Hordyk (2018) <doi:10.1111/2041-210X.13081>).
Author: Adrian Hordyk [aut, cre],
Quang Huynh [aut],
Tom Carruthers [aut],
Chris Grandin [ctb] (iSCAM functions)
Maintainer: Adrian Hordyk <adrian@bluematterscience.com>
Diff between MSEtool versions 3.3.0 dated 2021-11-16 and 3.4.0 dated 2022-01-05
MSEtool-3.3.0/MSEtool/R/Data_documentation.r |only MSEtool-3.3.0/MSEtool/man/VPA2OM.Rd |only MSEtool-3.4.0/MSEtool/DESCRIPTION | 13 MSEtool-3.4.0/MSEtool/MD5 | 209 +-- MSEtool-3.4.0/MSEtool/NAMESPACE | 7 MSEtool-3.4.0/MSEtool/NEWS.md | 63 MSEtool-3.4.0/MSEtool/R/Data_Functions.R | 39 MSEtool-3.4.0/MSEtool/R/Data_documentation.R |only MSEtool-3.4.0/MSEtool/R/MICE_Rel.R |only MSEtool-3.4.0/MSEtool/R/Misc_Internal.R | 31 MSEtool-3.4.0/MSEtool/R/OM_functions.R | 103 - MSEtool-3.4.0/MSEtool/R/SS2MOM_plots.R | 1 MSEtool-3.4.0/MSEtool/R/VPA2OM.R | 45 MSEtool-3.4.0/MSEtool/R/aaImportFrom.R | 2 MSEtool-3.4.0/MSEtool/R/multiMSE.R | 958 +++++++------- MSEtool-3.4.0/MSEtool/R/multiMSE_internal.R | 184 +- MSEtool-3.4.0/MSEtool/R/multi_q_estimation.R | 323 ++-- MSEtool-3.4.0/MSEtool/R/popdyn_MICE.R | 611 ++++---- MSEtool-3.4.0/MSEtool/R/runMSE.R | 45 MSEtool-3.4.0/MSEtool/README.md | 2 MSEtool-3.4.0/MSEtool/build |only MSEtool-3.4.0/MSEtool/inst/Rmd/Fleet/Catchability.Rmd | 4 MSEtool-3.4.0/MSEtool/inst/Rmd/Fleet/Effort.Rmd | 2 MSEtool-3.4.0/MSEtool/inst/Rmd/Fleet/MPA.Rmd | 2 MSEtool-3.4.0/MSEtool/inst/Rmd/Fleet/Selectivity.Rmd | 8 MSEtool-3.4.0/MSEtool/inst/Rmd/OM/OM.Rmd | 4 MSEtool-3.4.0/MSEtool/inst/Rmd/Stock/Depletion.Rmd | 2 MSEtool-3.4.0/MSEtool/inst/Rmd/Stock/Growth.Rmd | 6 MSEtool-3.4.0/MSEtool/inst/Rmd/Stock/Maturity.Rmd | 4 MSEtool-3.4.0/MSEtool/inst/Rmd/Stock/NaturalMortality.Rmd | 8 MSEtool-3.4.0/MSEtool/inst/Rmd/Stock/Recruitment.Rmd | 4 MSEtool-3.4.0/MSEtool/inst/Rmd/Stock/Spatial.Rmd | 2 MSEtool-3.4.0/MSEtool/man/Assess2OM.Rd |only MSEtool-3.4.0/MSEtool/man/ChkYrs.Rd | 68 MSEtool-3.4.0/MSEtool/man/CombineMMP.Rd | 38 MSEtool-3.4.0/MSEtool/man/DLMDataDir.Rd | 36 MSEtool-3.4.0/MSEtool/man/Data-class-objects.Rd | 2 MSEtool-3.4.0/MSEtool/man/DataDescription.Rd | 2 MSEtool-3.4.0/MSEtool/man/DataSlots.Rd | 2 MSEtool-3.4.0/MSEtool/man/Fleet-class-objects.Rd | 2 MSEtool-3.4.0/MSEtool/man/FleetDescription.Rd | 2 MSEtool-3.4.0/MSEtool/man/HistDescription.Rd | 2 MSEtool-3.4.0/MSEtool/man/HistMICE.Rd | 2 MSEtool-3.4.0/MSEtool/man/Imp-class-objects.Rd | 2 MSEtool-3.4.0/MSEtool/man/ImpDescription.Rd | 2 MSEtool-3.4.0/MSEtool/man/Kplot.Rd | 82 - MSEtool-3.4.0/MSEtool/man/LH2OM.Rd | 24 MSEtool-3.4.0/MSEtool/man/LHdatabase.Rd | 2 MSEtool-3.4.0/MSEtool/man/MOM-class-objects.Rd | 2 MSEtool-3.4.0/MSEtool/man/MSEDescription.Rd | 2 MSEtool-3.4.0/MSEtool/man/NAor0.Rd | 42 MSEtool-3.4.0/MSEtool/man/NOAA_plot.Rd | 60 MSEtool-3.4.0/MSEtool/man/OM-class-objects.Rd | 2 MSEtool-3.4.0/MSEtool/man/OM-class.Rd | 116 - MSEtool-3.4.0/MSEtool/man/OMDescription.Rd | 2 MSEtool-3.4.0/MSEtool/man/Obs-class-objects.Rd | 2 MSEtool-3.4.0/MSEtool/man/ObsDescription.Rd | 2 MSEtool-3.4.0/MSEtool/man/OneRep.Rd | 36 MSEtool-3.4.0/MSEtool/man/PMLimit.Rd | 236 +-- MSEtool-3.4.0/MSEtool/man/PWhisker.Rd | 40 MSEtool-3.4.0/MSEtool/man/PerformanceMetric.Rd | 186 +- MSEtool-3.4.0/MSEtool/man/Pplot.Rd | 52 MSEtool-3.4.0/MSEtool/man/Pplot2.Rd | 216 +-- MSEtool-3.4.0/MSEtool/man/Range.Rd | 38 MSEtool-3.4.0/MSEtool/man/Rec-class.Rd | 100 - MSEtool-3.4.0/MSEtool/man/ReqData.Rd | 2 MSEtool-3.4.0/MSEtool/man/ResFromRel.Rd | 10 MSEtool-3.4.0/MSEtool/man/SampleFleetPars.Rd | 78 - MSEtool-3.4.0/MSEtool/man/SampleStockPars.Rd | 70 - MSEtool-3.4.0/MSEtool/man/SimulatedData.Rd | 2 MSEtool-3.4.0/MSEtool/man/Stock-class-objects.Rd | 2 MSEtool-3.4.0/MSEtool/man/StockDescription.Rd | 2 MSEtool-3.4.0/MSEtool/man/TACfilter.Rd | 36 MSEtool-3.4.0/MSEtool/man/VOI.Rd | 86 - MSEtool-3.4.0/MSEtool/man/VOI2.Rd | 76 - MSEtool-3.4.0/MSEtool/man/VOIplot.Rd | 126 - MSEtool-3.4.0/MSEtool/man/alphaconv.Rd | 70 - MSEtool-3.4.0/MSEtool/man/applyMP.Rd | 11 MSEtool-3.4.0/MSEtool/man/calcMean.Rd | 30 MSEtool-3.4.0/MSEtool/man/calcProb.Rd | 30 MSEtool-3.4.0/MSEtool/man/char.log-class.Rd | 20 MSEtool-3.4.0/MSEtool/man/cv.Rd | 42 MSEtool-3.4.0/MSEtool/man/dnormal.Rd | 40 MSEtool-3.4.0/MSEtool/man/getEffhist.Rd | 46 MSEtool-3.4.0/MSEtool/man/getfirstlev.Rd | 46 MSEtool-3.4.0/MSEtool/man/getmov2.Rd | 84 - MSEtool-3.4.0/MSEtool/man/getsel.Rd | 44 MSEtool-3.4.0/MSEtool/man/initialize-methods.Rd | 102 - MSEtool-3.4.0/MSEtool/man/join_plots.Rd | 62 MSEtool-3.4.0/MSEtool/man/label.class-class.Rd | 20 MSEtool-3.4.0/MSEtool/man/makeMOM.Rd |only MSEtool-3.4.0/MSEtool/man/makeRel.Rd |only MSEtool-3.4.0/MSEtool/man/makeTransparent.Rd | 38 MSEtool-3.4.0/MSEtool/man/movfit_Rcpp.Rd | 62 MSEtool-3.4.0/MSEtool/man/optCPU.Rd | 66 MSEtool-3.4.0/MSEtool/man/plot.MSE.Rd | 32 MSEtool-3.4.0/MSEtool/man/popdynMICE.Rd | 5 MSEtool-3.4.0/MSEtool/man/popdynOneMICE.Rd | 44 MSEtool-3.4.0/MSEtool/man/prob.class-class.Rd | 20 MSEtool-3.4.0/MSEtool/man/qestMICE.Rd | 12 MSEtool-3.4.0/MSEtool/man/replic8.Rd | 40 MSEtool-3.4.0/MSEtool/man/runMSE.Rd | 2 MSEtool-3.4.0/MSEtool/man/sample_steepness2.Rd | 72 - MSEtool-3.4.0/MSEtool/man/sdconv.Rd | 70 - MSEtool-3.4.0/MSEtool/man/show-MSE.Rd | 28 MSEtool-3.4.0/MSEtool/man/show-Rec.Rd | 28 MSEtool-3.4.0/MSEtool/man/summary-Data.Rd | 72 - MSEtool-3.4.0/MSEtool/man/summary-MSE.Rd | 40 MSEtool-3.4.0/MSEtool/tests/manual/run-manual-tests.R | 10 MSEtool-3.4.0/MSEtool/tests/manual/test-code/test-MOM.R |only 110 files changed, 2983 insertions(+), 2879 deletions(-)
Title: Tools for Working with Posterior Distributions
Description: Provides useful tools for both users and developers of packages
for fitting Bayesian models or working with output from Bayesian models.
The primary goals of the package are to:
(a) Efficiently convert between many different useful formats of
draws (samples) from posterior or prior distributions.
(b) Provide consistent methods for operations commonly performed on draws,
for example, subsetting, binding, or mutating draws.
(c) Provide various summaries of draws in convenient formats.
(d) Provide lightweight implementations of state of the art posterior
inference diagnostics. References: Vehtari et al. (2021)
<doi:10.1214/20-BA1221>.
Author: Paul-Christian Bürkner [aut, cre],
Jonah Gabry [aut],
Matthew Kay [aut],
Aki Vehtari [aut],
Måns Magnusson [ctb],
Rok Češnovar [ctb],
Ben Lambert [ctb],
Ozan Adıgüzel [ctb],
Jacob Socolar [ctb]
Maintainer: Paul-Christian Bürkner <paul.buerkner@gmail.com>
Diff between posterior versions 1.1.0 dated 2021-09-09 and 1.2.0 dated 2022-01-05
posterior-1.1.0/posterior/man/vctrs-compat.Rd |only posterior-1.2.0/posterior/DESCRIPTION | 11 posterior-1.2.0/posterior/LICENSE | 6 posterior-1.2.0/posterior/MD5 | 305 +- posterior-1.2.0/posterior/NAMESPACE | 871 ++--- posterior-1.2.0/posterior/NEWS.md | 18 posterior-1.2.0/posterior/R/as_draws.R | 264 - posterior-1.2.0/posterior/R/as_draws_array.R | 475 +-- posterior-1.2.0/posterior/R/as_draws_df.R | 462 +-- posterior-1.2.0/posterior/R/as_draws_list.R | 328 +- posterior-1.2.0/posterior/R/as_draws_matrix.R | 417 +- posterior-1.2.0/posterior/R/as_draws_rvars.R | 488 +-- posterior-1.2.0/posterior/R/bind_draws.R | 518 +-- posterior-1.2.0/posterior/R/convergence.R | 44 posterior-1.2.0/posterior/R/draws-index.R | 1210 ++++---- posterior-1.2.0/posterior/R/example_draws.R | 106 posterior-1.2.0/posterior/R/extract_variable.R | 114 posterior-1.2.0/posterior/R/extract_variable_matrix.R | 120 posterior-1.2.0/posterior/R/merge_chains.R | 192 - posterior-1.2.0/posterior/R/misc.R | 486 +-- posterior-1.2.0/posterior/R/mutate_variables.R | 214 - posterior-1.2.0/posterior/R/order_draws.R | 222 - posterior-1.2.0/posterior/R/posterior-package.R | 118 posterior-1.2.0/posterior/R/print.R | 684 ++-- posterior-1.2.0/posterior/R/remove_variables.R | 156 - posterior-1.2.0/posterior/R/rename_variables.R | 132 posterior-1.2.0/posterior/R/repair_draws.R | 298 - posterior-1.2.0/posterior/R/resample_draws.R | 344 +- posterior-1.2.0/posterior/R/reserved_variables.R | 178 - posterior-1.2.0/posterior/R/rstar.R | 392 +- posterior-1.2.0/posterior/R/rvar-.R | 1502 +++++----- posterior-1.2.0/posterior/R/rvar-apply.R | 182 - posterior-1.2.0/posterior/R/rvar-bind.R | 334 +- posterior-1.2.0/posterior/R/rvar-cast.R | 625 +--- posterior-1.2.0/posterior/R/rvar-dim.R | 94 posterior-1.2.0/posterior/R/rvar-dist.R | 144 posterior-1.2.0/posterior/R/rvar-math.R | 406 +- posterior-1.2.0/posterior/R/rvar-print.R | 479 +-- posterior-1.2.0/posterior/R/rvar-rfun.R | 534 +-- posterior-1.2.0/posterior/R/rvar-slice.R | 398 +- posterior-1.2.0/posterior/R/rvar-summaries-over-draws.R | 470 +-- posterior-1.2.0/posterior/R/rvar-summaries-within-draws.R | 398 +- posterior-1.2.0/posterior/R/split_chains.R | 110 posterior-1.2.0/posterior/R/subset_draws.R | 768 ++--- posterior-1.2.0/posterior/R/summarise_draws.R | 656 ++-- posterior-1.2.0/posterior/R/thin_draws.R | 80 posterior-1.2.0/posterior/R/weight_draws.R | 326 +- posterior-1.2.0/posterior/R/zzz.R | 17 posterior-1.2.0/posterior/README.md | 830 ++--- posterior-1.2.0/posterior/build/vignette.rds |binary posterior-1.2.0/posterior/inst/CITATION | 54 posterior-1.2.0/posterior/inst/doc/posterior.R | 220 - posterior-1.2.0/posterior/inst/doc/posterior.Rmd | 812 ++--- posterior-1.2.0/posterior/inst/doc/posterior.html | 1324 ++++---- posterior-1.2.0/posterior/inst/doc/rvar.R | 304 +- posterior-1.2.0/posterior/inst/doc/rvar.Rmd | 960 +++--- posterior-1.2.0/posterior/inst/doc/rvar.html | 1272 ++++---- posterior-1.2.0/posterior/man/as_rvar.Rd | 116 posterior-1.2.0/posterior/man/autocorrelation.Rd | 40 posterior-1.2.0/posterior/man/autocovariance.Rd | 40 posterior-1.2.0/posterior/man/bind_draws.Rd | 106 posterior-1.2.0/posterior/man/chol.rvar.Rd | 40 posterior-1.2.0/posterior/man/diagnostics.Rd | 56 posterior-1.2.0/posterior/man/draws-index.Rd | 160 - posterior-1.2.0/posterior/man/draws.Rd | 110 posterior-1.2.0/posterior/man/draws_array.Rd | 166 - posterior-1.2.0/posterior/man/draws_df.Rd | 210 - posterior-1.2.0/posterior/man/draws_list.Rd | 170 - posterior-1.2.0/posterior/man/draws_matrix.Rd | 166 - posterior-1.2.0/posterior/man/draws_of.Rd | 136 posterior-1.2.0/posterior/man/draws_rvars.Rd | 172 - posterior-1.2.0/posterior/man/draws_summary.Rd | 236 - posterior-1.2.0/posterior/man/ess_basic.Rd | 161 - posterior-1.2.0/posterior/man/ess_bulk.Rd | 153 - posterior-1.2.0/posterior/man/ess_mean.Rd | 106 posterior-1.2.0/posterior/man/ess_quantile.Rd | 175 - posterior-1.2.0/posterior/man/ess_sd.Rd | 147 posterior-1.2.0/posterior/man/ess_tail.Rd | 153 - posterior-1.2.0/posterior/man/example_draws.Rd | 114 posterior-1.2.0/posterior/man/extract_variable.Rd | 74 posterior-1.2.0/posterior/man/extract_variable_matrix.Rd | 78 posterior-1.2.0/posterior/man/is_rvar.Rd | 40 posterior-1.2.0/posterior/man/mcse_mean.Rd | 140 posterior-1.2.0/posterior/man/mcse_quantile.Rd | 169 - posterior-1.2.0/posterior/man/mcse_sd.Rd | 145 posterior-1.2.0/posterior/man/merge_chains.Rd | 104 posterior-1.2.0/posterior/man/mutate_variables.Rd | 122 posterior-1.2.0/posterior/man/order_draws.Rd | 98 posterior-1.2.0/posterior/man/posterior-package.Rd | 128 posterior-1.2.0/posterior/man/print.draws_array.Rd | 104 posterior-1.2.0/posterior/man/print.draws_df.Rd | 94 posterior-1.2.0/posterior/man/print.draws_list.Rd | 104 posterior-1.2.0/posterior/man/print.draws_matrix.Rd | 94 posterior-1.2.0/posterior/man/print.draws_rvars.Rd | 96 posterior-1.2.0/posterior/man/print.rvar.Rd | 174 - posterior-1.2.0/posterior/man/quantile2.Rd | 96 posterior-1.2.0/posterior/man/r_scale.Rd | 42 posterior-1.2.0/posterior/man/rdo.Rd | 122 posterior-1.2.0/posterior/man/reexports.Rd | 34 posterior-1.2.0/posterior/man/rename_variables.Rd | 90 posterior-1.2.0/posterior/man/repair_draws.Rd | 102 posterior-1.2.0/posterior/man/resample_draws.Rd | 154 - posterior-1.2.0/posterior/man/reserved_variables.Rd | 136 posterior-1.2.0/posterior/man/rfun.Rd | 138 posterior-1.2.0/posterior/man/rhat.Rd | 145 posterior-1.2.0/posterior/man/rhat_basic.Rd | 155 - posterior-1.2.0/posterior/man/rstar.Rd | 242 - posterior-1.2.0/posterior/man/rvar-dist.Rd | 118 posterior-1.2.0/posterior/man/rvar-matmult.Rd | 118 posterior-1.2.0/posterior/man/rvar-summaries-over-draws.Rd | 316 +- posterior-1.2.0/posterior/man/rvar-summaries-within-draws.Rd | 204 - posterior-1.2.0/posterior/man/rvar.Rd | 232 - posterior-1.2.0/posterior/man/rvar_apply.Rd | 134 posterior-1.2.0/posterior/man/rvar_is_finite.Rd | 106 posterior-1.2.0/posterior/man/rvar_rng.Rd | 136 posterior-1.2.0/posterior/man/split_chains.Rd | 62 posterior-1.2.0/posterior/man/sub-.draws_array.Rd | 50 posterior-1.2.0/posterior/man/sub-.draws_matrix.Rd | 50 posterior-1.2.0/posterior/man/subset_draws.Rd | 240 - posterior-1.2.0/posterior/man/thin_draws.Rd | 68 posterior-1.2.0/posterior/man/u_scale.Rd | 50 posterior-1.2.0/posterior/man/weight_draws.Rd | 152 - posterior-1.2.0/posterior/man/weights.draws.Rd | 108 posterior-1.2.0/posterior/man/z_scale.Rd | 50 posterior-1.2.0/posterior/tests/testthat.R | 8 posterior-1.2.0/posterior/tests/testthat/test-as_draws.R | 694 ++-- posterior-1.2.0/posterior/tests/testthat/test-bind_draws.R | 377 +- posterior-1.2.0/posterior/tests/testthat/test-convergence.R | 6 posterior-1.2.0/posterior/tests/testthat/test-draws-index.R | 256 - posterior-1.2.0/posterior/tests/testthat/test-extract_variable.R | 78 posterior-1.2.0/posterior/tests/testthat/test-extract_variable_matrix.R | 78 posterior-1.2.0/posterior/tests/testthat/test-mutate_variables.R | 128 posterior-1.2.0/posterior/tests/testthat/test-print.R | 228 - posterior-1.2.0/posterior/tests/testthat/test-remove_variables.R | 68 posterior-1.2.0/posterior/tests/testthat/test-resample_draws.R | 136 posterior-1.2.0/posterior/tests/testthat/test-rstar.R | 219 - posterior-1.2.0/posterior/tests/testthat/test-rvar-.R | 470 +-- posterior-1.2.0/posterior/tests/testthat/test-rvar-apply.R | 94 posterior-1.2.0/posterior/tests/testthat/test-rvar-bind.R | 223 - posterior-1.2.0/posterior/tests/testthat/test-rvar-cast.R | 301 +- posterior-1.2.0/posterior/tests/testthat/test-rvar-dim.R | 30 posterior-1.2.0/posterior/tests/testthat/test-rvar-dist.R | 76 posterior-1.2.0/posterior/tests/testthat/test-rvar-math.R | 498 +-- posterior-1.2.0/posterior/tests/testthat/test-rvar-print.R | 187 - posterior-1.2.0/posterior/tests/testthat/test-rvar-rfun.R | 134 posterior-1.2.0/posterior/tests/testthat/test-rvar-slice.R | 540 +-- posterior-1.2.0/posterior/tests/testthat/test-rvar-summaries-over-draws.R | 252 - posterior-1.2.0/posterior/tests/testthat/test-rvar-summaries-within-draws.R | 236 - posterior-1.2.0/posterior/tests/testthat/test-subset_draws.R | 348 +- posterior-1.2.0/posterior/tests/testthat/test-summarise_draws.R | 295 + posterior-1.2.0/posterior/tests/testthat/test-variables.R | 174 - posterior-1.2.0/posterior/tests/testthat/test-weight_draws.R | 128 posterior-1.2.0/posterior/vignettes/posterior.Rmd | 812 ++--- posterior-1.2.0/posterior/vignettes/rvar.Rmd | 960 +++--- 154 files changed, 19545 insertions(+), 19308 deletions(-)
Title: Probability Computations on Pedigrees
Description: An implementation of the Elston-Stewart algorithm for
calculating pedigree likelihoods given genetic marker data (Elston and
Stewart (1971) <doi:10.1159/000152448>). The standard algorithm is
extended to allow inbred founders. 'pedprobr' is part of the 'ped
suite', a collection of packages for pedigree analysis in R. In
particular, 'pedprobr' depends on 'pedtools' for pedigree
manipulations and 'pedmut' for mutation modelling. For more
information, see 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).
Author: Magnus Dehli Vigeland [aut, cre]
(<https://orcid.org/0000-0002-9134-4962>)
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedprobr versions 0.6.0 dated 2022-01-03 and 0.6.1 dated 2022-01-05
DESCRIPTION | 11 +++++------ MD5 | 10 +++++----- NEWS.md | 7 +++++++ R/merlin.R | 48 +++++++++++++++++++++++++++++++++++++++++------- build/partial.rdb |binary man/merlin.Rd | 18 ++++++++++++++---- 6 files changed, 72 insertions(+), 22 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-14 1.4-11
2017-11-06 1.4-10
2017-09-28 1.4-9
2016-11-29 1.4-6
2014-12-20 1.3-7
2013-07-02 1.1-0
2012-04-15 1.0-00
Title: Tidy Model Visualisation for Generalised Additive Models
Description: Provides functions for visualising generalised
additive models and getting predicted values using tidy tools from the 'tidyverse' packages.
Author: Stefano Coretta [aut, cre],
Jacolien van Rij [cph] (Imported functions from itsadug),
Martijn Wieling [cph] (Imported functions from itsadug)
Maintainer: Stefano Coretta <stefano.coretta@gmail.com>
Diff between tidymv versions 3.2.1 dated 2021-04-21 and 3.3.0 dated 2022-01-05
DESCRIPTION | 10 - MD5 | 18 +-- NEWS.md | 11 ++ R/utils.R | 35 +++++- README.md | 3 build/vignette.rds |binary inst/doc/plot-smooths.html | 233 +++++++++++++++++++++++++++++++++++++++++--- inst/doc/predict-gam.html | 235 +++++++++++++++++++++++++++++++++++++++++---- man/predict_gam.Rd | 22 +++- man/tidymv-package.Rd | 3 10 files changed, 511 insertions(+), 59 deletions(-)
Title: Stabilising Variable Selection
Description: A stable approach to variable selection through stability selection and the use of an objective threshold based on a model from permuted data. Lima et al (2021) <doi:10.1038/s41598-020-79317-8>, Meinshausen and Buhlmann (2010) <doi:10.1111/j.1467-9868.2010.00740.x>.
Author: Robert Hyde [aut, cre] (<https://orcid.org/0000-0002-8705-9405>),
Martin Green [aut],
Eliana Lima [aut]
Maintainer: Robert Hyde <robert.hyde4@nottingham.ac.uk>
Diff between stabiliser versions 0.1.0 dated 2021-08-10 and 0.1.1 dated 2022-01-05
stabiliser-0.1.0/stabiliser/R/create_sim_dat.R |only stabiliser-0.1.0/stabiliser/R/sim_dat.R |only stabiliser-0.1.0/stabiliser/data/sim_dat.rda |only stabiliser-0.1.0/stabiliser/man/sim_dat.Rd |only stabiliser-0.1.1/stabiliser/DESCRIPTION | 18 stabiliser-0.1.1/stabiliser/MD5 | 68 +- stabiliser-0.1.1/stabiliser/NAMESPACE | 2 stabiliser-0.1.1/stabiliser/NEWS.md | 7 stabiliser-0.1.1/stabiliser/R/boot_model.R | 6 stabiliser-0.1.1/stabiliser/R/model_enet.R | 129 +--- stabiliser-0.1.1/stabiliser/R/model_lasso.R | 116 +--- stabiliser-0.1.1/stabiliser/R/model_mbic.R | 8 stabiliser-0.1.1/stabiliser/R/model_mcp.R | 11 stabiliser-0.1.1/stabiliser/R/model_selector.R | 4 stabiliser-0.1.1/stabiliser/R/perm_stab.R | 46 - stabiliser-0.1.1/stabiliser/R/permute.R | 9 stabiliser-0.1.1/stabiliser/R/rep_selector.R | 90 +-- stabiliser-0.1.1/stabiliser/R/stabilise.R | 7 stabiliser-0.1.1/stabiliser/R/stabiliser.R | 3 stabiliser-0.1.1/stabiliser/R/stabiliser_example.R | 1 stabiliser-0.1.1/stabiliser/inst/doc/stabiliser.R | 3 stabiliser-0.1.1/stabiliser/inst/doc/stabiliser.Rmd | 8 stabiliser-0.1.1/stabiliser/inst/doc/stabiliser.html | 487 ++++++++++-------- stabiliser-0.1.1/stabiliser/man/boot_model.Rd | 1 stabiliser-0.1.1/stabiliser/man/model_enet.Rd | 3 stabiliser-0.1.1/stabiliser/man/model_lasso.Rd | 3 stabiliser-0.1.1/stabiliser/man/model_mbic.Rd | 3 stabiliser-0.1.1/stabiliser/man/model_mcp.Rd | 3 stabiliser-0.1.1/stabiliser/man/model_selector.Rd | 1 stabiliser-0.1.1/stabiliser/man/perm_stab.Rd | 1 stabiliser-0.1.1/stabiliser/man/permute.Rd | 1 stabiliser-0.1.1/stabiliser/man/rep_selector_boot.Rd | 1 stabiliser-0.1.1/stabiliser/man/rep_selector_perm.Rd | 1 stabiliser-0.1.1/stabiliser/man/stabilise.Rd | 2 stabiliser-0.1.1/stabiliser/man/stabiliser.Rd | 3 stabiliser-0.1.1/stabiliser/man/stabiliser_example.Rd | 1 stabiliser-0.1.1/stabiliser/vignettes/stabiliser.Rmd | 8 37 files changed, 563 insertions(+), 492 deletions(-)
Title: An Interface to IBGE's SIDRA API
Description: Allows the user to connect with IBGE's (Instituto Brasileiro de
Geografia e Estatistica, see <https://www.ibge.gov.br/> for more information)
SIDRA API in a flexible way. SIDRA is the acronym to "Sistema IBGE de
Recuperacao Automatica" and is the system where IBGE turns available
aggregate data from their researches.
Author: Renato Prado Siqueira [aut, cre]
Maintainer: Renato Prado Siqueira <rpradosiqueira@gmail.com>
Diff between sidrar versions 0.2.6 dated 2021-08-02 and 0.2.7 dated 2022-01-05
DESCRIPTION | 8 MD5 | 14 NEWS.md | 4 build/vignette.rds |binary inst/doc/Introduction_to_sidrar.R | 58 +-- inst/doc/Introduction_to_sidrar.Rmd | 10 inst/doc/Introduction_to_sidrar.html | 521 ++--------------------------------- vignettes/Introduction_to_sidrar.Rmd | 10 8 files changed, 96 insertions(+), 529 deletions(-)
Title: A Wrapper of the 'React' Library 'Chakra UI' for 'Shiny'
Description: Makes the 'React' library 'Chakra UI' usable in 'Shiny' apps. 'Chakra UI' components include alert dialogs, drawers (sliding panels), menus, modals, popovers, sliders, and more.
Author: Stéphane Laurent [aut, cre],
Segun Adebayo [cph] ('Chakra UI' library (https://chakra-ui.com/)),
David Kaye [ctb] ('json-normalize.js'),
RubyLouvre [cph] ('jsx-parser' library),
Terence Eden [cph] ('SuperTinyIcons' library
(https://github.com/edent/SuperTinyIcons/)),
Ionic (http://ionic.io/) [cph]
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between shinyChakraUI versions 1.1.0 dated 2021-12-21 and 1.1.1 dated 2022-01-05
DESCRIPTION | 6 ++--- MD5 | 8 +++---- NEWS.md | 5 ++++ inst/www/shinyChakraUI/chakra/chakra.js | 32 +++++++++++++++++++++------- inst/www/shinyChakraUI/chakra/chakra.js.map | 2 - 5 files changed, 37 insertions(+), 16 deletions(-)
Title: Get Free Proxy IP and Port
Description: Allows get address and port
of the free proxy server, from one of two services
<http://gimmeproxy.com/> or <https://getproxylist.com/>.
And it's easy to redirect your Internet connection through
a proxy server.
Author: Alexey Seleznev <selesnow@gmail.com>
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between getProxy versions 1.12 dated 2018-08-20 and 1.13 dated 2022-01-05
DESCRIPTION | 14 +-- MD5 | 13 +- NAMESPACE | 4 NEWS.md |only R/getProxy.R | 251 +++++++++++++++++++++++++++++++++++++++--------------- README.md |only build/partial.rdb |binary inst |only man/getProxy.Rd | 6 - 9 files changed, 205 insertions(+), 83 deletions(-)
Title: Download Data from the FAOSTAT Database
Description: Download Data from the FAOSTAT Database of the Food and Agricultural Organization (FAO) of the United Nations.
A list of functions to download statistics from FAOSTAT (database of the FAO <https://www.fao.org/faostat/>)
and WDI (database of the World Bank <https://data.worldbank.org/>), and to perform some harmonization operations.
Author: Michael C. J. Kao <michael.kao@fao.org>, Markus Gesmann, Filippo Gheri
Maintainer: Paul Rougieux <paul.rougieux@gmail.com>
Diff between FAOSTAT versions 2.2.1 dated 2020-11-13 and 2.2.3 dated 2022-01-05
DESCRIPTION | 12 +++++------ MD5 | 28 +++++++++++++-------------- R/FAOsearch.R | 13 ++++++++++-- R/faostat_bulk_download.R | 44 ++++++++++++++++++++++++++++--------------- R/getWDI.R | 9 +++----- R/lsgr.R | 2 - R/printLab.R | 2 - build/vignette.rds |binary inst/doc/FAOSTAT.R | 6 ++--- inst/doc/FAOSTAT.Rnw | 6 ++--- inst/doc/FAOSTAT.pdf |binary man/download_faostat_bulk.Rd | 29 +++++++++++++++++----------- man/getWDI.Rd | 5 +--- man/lsgr.Rd | 2 - vignettes/FAOSTAT.Rnw | 6 ++--- 15 files changed, 96 insertions(+), 68 deletions(-)
Title: Collective Matrix Factorization for Recommender Systems
Description: Collective matrix factorization (a.k.a. multi-view or multi-way factorization,
Singh, Gordon, (2008) <doi:10.1145/1401890.1401969>) tries to approximate a matrix 'X' as the
product of two low-dimensional matrices, optionally aided with secondary information matrices about rows
and/or columns of 'X' which are also factorized using the same latent components.
The intended usage is for recommender systems, dimensionality reduction, and missing value imputation.
Implements extensions of the original model (Cortes, (2018) <arXiv:1809.00366>) and can produce
different factorizations such as the weighted 'implicit-feedback' model (Hu, Koren, Volinsky,
(2008) <doi:10.1109/ICDM.2008.22>), the 'weighted-lambda-regularization' model,
(Zhou, Wilkinson, Schreiber, Pan, (2008) <doi:10.1007/978-3-540-68880-8_32>),
or the enhanced model with 'implicit features' (Rendle, Zhang,
Koren, (2019) <arXiv:1905.01395>), with or without side information. Can use gradient-based
procedures or alternating-least squares procedures (Koren, Bell, Volinsky, (2009)
<doi:10.1109/MC.2009.263>), with either a Cholesky solver, a faster conjugate gradient solver
(Takacs, Pilaszy, Tikk, (2011) <doi:10.1145/2043932.2043987>), or a non-negative
coordinate descent solver (Franc, Hlavac, Navara, (2005) <doi:10.1007/11556121_50>),
providing efficient methods for sparse and dense data, and mixtures thereof.
Supports L1 and L2 regularization in the main models,
offers alternative most-popular and content-based models, and implements functionality
for cold-start recommendations and imputation of 2D data.
Author: David Cortes [aut, cre, cph],
Jorge Nocedal [cph] (Copyright holder of included LBFGS library),
Naoaki Okazaki [cph] (Copyright holder of included LBFGS library),
David Blackman [cph] (Copyright holder of original Xoshiro code),
Sebastiano Vigna [cph] (Copyright holder of original Xoshiro code)
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between cmfrec versions 3.3.0 dated 2022-01-03 and 3.3.1 dated 2022-01-05
DESCRIPTION | 8 ++--- LICENSE | 2 - MD5 | 20 ++++++------ src/Rwrapper.c | 4 +- src/arithmetic_ansi.h | 2 - src/cmfrec.h | 80 +++++++++++++++++++++++++------------------------- src/collective.c | 14 ++++---- src/common.c | 6 +-- src/helpers.c | 8 ++--- src/lbfgs.c | 20 ++++++------ src/offsets.c | 4 +- 11 files changed, 84 insertions(+), 84 deletions(-)
Title: Affluence (Richness) Indices
Description: Enables to compute the statistical indices of affluence (richness) with bootstrap errors, and inequality and polarization indices. Moreover, gives the possibility of calculation of Medeiros affluence line. In 2.1 version some simple errors are fixed.
Author: Alicja Wolny-Dominiak and Anna Saczewska-Piotrowska
Maintainer: Alicja Wolny-Dominiak <alicja.wolny-dominiak@ue.katowice.pl>
Diff between affluenceIndex versions 2.0 dated 2021-09-29 and 2.1 dated 2022-01-05
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- R/r.cha.R | 6 ++---- R/r.cha.sub.R | 5 ++--- R/r.fgt.R | 6 +++--- R/r.fgt.sub.R | 5 ++--- man/S90S40.Rd | 2 +- man/gini.w.Rd | 4 ++-- man/r.cha.Rd | 4 ++-- man/r.fgt.Rd | 4 ++-- man/r.hc.Rd | 4 ++-- man/r.is.Rd | 4 ++-- 12 files changed, 36 insertions(+), 40 deletions(-)
More information about affluenceIndex at CRAN
Permanent link
Title: Interactive R Unit Tests
Description: Simplifies regression tests by comparing objects produced by test
code with earlier versions of those same objects. If objects are unchanged
the tests pass, otherwise execution stops with error details. If in
interactive mode, tests can be reviewed through the provided interactive
environment.
Author: Brodie Gaslam [aut, cre],
R Core Team [cph] (Traceback function sources.)
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between unitizer versions 1.4.15 dated 2021-08-01 and 1.4.16 dated 2022-01-05
DESCRIPTION | 6 - MD5 | 86 +++++++++++----------- NEWS.md | 15 +++ R/conditions.R | 38 +++++++++ R/faux_prompt.R | 6 + R/get.R | 4 - R/load.R | 2 R/misc.R | 32 ++++++-- R/prompt.R | 17 +++- R/state.R | 7 + R/translate.R | 37 --------- R/unitize.core.R | 56 +++++++------- R/upgrade.R | 4 - README.md | 29 ++----- inst/doc/u0_unitizer_index.html | 13 +++ inst/doc/u1_intro.html | 78 ++++++++++++-------- inst/doc/u2_tests.html | 29 +++++-- inst/doc/u3_interactive-env.html | 46 +++++++---- inst/doc/u4_reproducible-tests.html | 26 +++++- inst/doc/u5_miscellaneous.html | 36 ++++++--- man/unitizerState.Rd | 7 + tests/_helper/init.R | 1 tests/_helper/pkgs.R | 2 tests/_helper/ref-objs/refobjs/parse-eq.rds |only tests/_helper/ref-objs/translate/testthat2 |only tests/aammrtf/ref.R | 6 - tests/not-cran.R |only tests/not-cran.Rout.save |only tests/t-demo.R | 4 - tests/t-demo.Rout.save | 10 -- tests/t-misc.R | 67 +++++++++++++---- tests/t-misc.Rout.save | 81 ++++++++++++++------ tests/t-parse.R | 14 +++ tests/t-parse.Rout.save | 109 ++++------------------------ tests/t-prompt.R | 7 + tests/t-prompt.Rout.save | 17 +++- tests/t-shim.R | 2 tests/t-shim.Rout.save | 4 - tests/t-translate.R | 33 +++++++- tests/t-translate.Rout.save | 62 +++++++++++++-- tests/t-upgrade.R | 30 +++++++ tests/t-upgrade.Rout.save | 90 +++++++++++++++++++++-- tests/t-utz1.R | 7 + tests/t-utz1.Rout.save | 28 ++++--- tests/t-utz2.R | 4 - tests/t-utz2.Rout.save | 22 +++-- 46 files changed, 763 insertions(+), 411 deletions(-)
Title: Owen Q-Function
Description: Evaluates the Owen Q-function for an integer value of the degrees of freedom, by applying Owen's algorithm (1965) <doi:10.1093/biomet/52.3-4.437>.
It is useful for the calculation of the power of equivalence tests.
Author: Stéphane Laurent
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between OwenQ versions 1.0.4 dated 2021-09-20 and 1.0.5 dated 2022-01-05
DESCRIPTION | 8 ++++---- LICENSE |only MD5 | 17 +++++++++-------- NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/OwenQ.html | 8 ++++---- inst/doc/Validation.R | 2 +- inst/doc/Validation.Rmd | 6 +++--- inst/doc/Validation.html | 38 +++++++++++++++++++------------------- vignettes/Validation.Rmd | 6 +++--- 10 files changed, 47 insertions(+), 42 deletions(-)
Title: Fishery Science Methods and Models
Description: Functions for applying a wide range of fisheries stock assessment methods.
Author: Gary A. Nelson <gary.nelson@mass.gov>
Maintainer: Gary A. Nelson <gary.nelson@mass.gov>
Diff between fishmethods versions 1.11-2 dated 2021-07-16 and 1.11-3 dated 2022-01-05
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/agesurv.R | 11 ++++++++--- R/growth.R | 12 ++++++------ man/M.empirical.Rd | 2 +- man/fm_telemetry.Rd | 3 ++- man/menhaden.Rd | 2 +- 7 files changed, 28 insertions(+), 22 deletions(-)
Title: Extended Mixed Models Using Latent Classes and Latent Processes
Description: Estimation of various extensions of the mixed models including latent class mixed models, joint latent latent class mixed models, mixed models for curvilinear outcomes or mixed models for multivariate longitudinal outcomes using a maximum likelihood estimation method (Proust-Lima, Philipps, Liquet (2017) <doi:10.18637/jss.v078.i02>).
Author: Cecile Proust-Lima, Viviane Philipps, Amadou Diakite and Benoit Liquet
Maintainer: Cecile Proust-Lima <cecile.proust-lima@inserm.fr>
Diff between lcmm versions 1.9.3 dated 2021-06-21 and 1.9.4 dated 2022-01-05
DESCRIPTION | 17 MD5 | 109 ++-- NAMESPACE | 18 NEWS | 17 R/Contlcmm.R | 51 +- R/ItemInfo.R |only R/Jointlcmm.R | 102 ++-- R/Ordlcmm.R | 39 + R/cuminc.R | 2 R/gridsearch.R | 6 R/hlme.R | 106 +++- R/lcmm-package.R | 50 +- R/lcmm.R | 20 R/mpjlcmm.R | 100 ++-- R/multlcmm.R | 584 +++++++++++++++++------ R/permut.R | 35 + R/plot.ItemInfo.R |only R/plot.R | 48 + R/plot.predictlink.R | 11 R/plotfit.R | 7 R/predictL.multlcmm.R | 821 +++++++++++++++++---------------- R/predictY.multlcmm.R | 814 +++++++++++++++++--------------- R/predictYcond.R | 5 R/predictlink.multlcmm.R | 40 + R/print.multlcmm.R | 151 +++--- R/simdataHADS.R |only R/simulate.R |only R/standardMethods.R | 10 R/summary.multlcmm.R | 11 R/transfo_spl.R |only THANKS | 2 build/partial.rdb |binary build/vignette.rds |binary data/simdataHADS.rda |only inst/doc/dynamicIRT_with_multlcmm.R |only inst/doc/dynamicIRT_with_multlcmm.Rmd |only inst/doc/dynamicIRT_with_multlcmm.html |only inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 2 man/ItemInfo.Rd |only man/Jointlcmm.Rd | 18 man/StandardMethods.Rd | 2 man/hlme.Rd | 12 man/lcmm-package.Rd | 43 + man/lcmm.Rd | 10 man/mpjlcmm.Rd | 15 man/multlcmm.Rd | 76 ++- man/plot.ItemInfo.Rd |only man/simdataHADS.Rd |only man/simulate.lcmm.Rd |only src/AOptim.f90 | 8 src/Makevars | 4 src/calculusTransfo.f90 | 419 ++++++++-------- src/hetmixMult.f90 |only src/hetmixlin.f90 | 11 src/init.c | 8 src/iteminfo.f90 |only src/lcmm.h | 126 ++++- src/mpjhet.f90 | 4 src/predictMult.f90 | 631 ++++++++++++++++++------- src/predictYcond.f90 | 65 ++ vignettes/dynamicIRT_with_multlcmm.Rmd |only vignettes/introduction.Rmd | 2 vignettes/models_IRT.RData |only 64 files changed, 2923 insertions(+), 1711 deletions(-)
Title: Detecting Changes in Autocorrelated and Fluctuating Signals
Description: Detect abrupt changes in time series with local fluctuations as a random walk process and autocorrelated noise as an AR(1) process. See Romano, G., Rigaill, G., Runge, V., Fearnhead, P. (2021) <doi:10.1080/01621459.2021.1909598>.
Author: Gaetano Romano [aut, cre],
Guillem Rigaill [aut],
Vincent Runge [aut],
Paul Fearnhead [aut]
Maintainer: Gaetano Romano <g.romano@lancaster.ac.uk>
Diff between DeCAFS versions 3.2.3 dated 2021-04-09 and 3.3.1 dated 2022-01-05
DESCRIPTION | 8 ++++---- MD5 | 17 ++++++++++------- NAMESPACE | 2 +- R/DeCAFS.R | 5 ++--- R/estimateParameters.R | 19 +++++++++++-------- R/guidedParameterEstimation.R |only README.md |only build/partial.rdb |binary man/DeCAFS.Rd | 6 +++--- man/estimateParameters.Rd | 15 +++++++++------ man/guidedModelSelection.Rd |only 11 files changed, 40 insertions(+), 32 deletions(-)
Title: Weights for Incomplete Longitudinal Data and Quantile Regression
Description: Estimation of observation-specific weights for incomplete longitudinal data and bootstrap procedure for weighted quantile regressions. See Jacqmin-Gadda, Rouanet, Mba, Philipps, Dartigues (2020) for details <doi:10.1177/0962280220909986>.
Author: Viviane Philipps
Maintainer: Viviane Philipps <Viviane.Philipps@u-bordeaux.fr>
Diff between weightQuant versions 1.0 dated 2018-12-30 and 1.0.1 dated 2022-01-05
DESCRIPTION | 13 +++++++------ MD5 | 14 +++++++------- NAMESPACE | 1 + R/bootwrq.R | 1 + R/summary.bootwrq.R | 2 +- R/test.bootwrq.R | 2 +- build/partial.rdb |binary man/weightQuant-package.Rd | 3 +++ 8 files changed, 21 insertions(+), 15 deletions(-)
Title: Innovative Complex Split Procedures in Random Forests Through
Candidate Split Sampling
Description: Implements interaction forests [1], which are specific diversity forests and
the basic form of diversity forests that uses univariable, binary splitting [2].
Interaction forests (IFs) are ensembles of decision trees that model quantitative and
qualitative interaction effects using bivariable splitting. IFs come with the
Effect Importance Measure (EIM), which can be used to identify variable pairs that
feature quantitative and qualitative interaction effects with high predictive
relevance. IFs and EIM focus on well interpretable forms of interactions.
The package also offers plot functions for visualising the estimated forms of
interaction effects.
Categorical, metric, and survival outcomes are supported.
This is a fork of the R package 'ranger' (main author: Marvin N. Wright) that
implements random forests using an efficient C++ implementation.
References:
[1] Hornung, R. & Boulesteix, A.-L. (2021) Interaction Forests: Identifying and
exploiting interpretable quantitative and qualitative interaction effects.
Technical Report No. 237, Department of Statistics, University of Munich,
<doi:10.5282/ubm/epub.75269>.
[2] Hornung, R. (2022) Diversity forests: Using split sampling to enable
innovative complex split procedures in random forests.
SN Computer Science 3(2):1, <doi:10.1007/s42979-021-00920-1>.
Author: Roman Hornung [aut, cre], Marvin N. Wright [ctb, cph]
Maintainer: Roman Hornung <hornung@ibe.med.uni-muenchen.de>
Diff between diversityForest versions 0.3.2 dated 2022-01-04 and 0.3.3 dated 2022-01-05
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/partial.rdb |binary src/TreeClassification.h | 2 +- src/TreeProbability.h | 2 +- src/TreeRegression.h | 2 +- src/TreeSurvival.h | 2 +- 7 files changed, 14 insertions(+), 14 deletions(-)
More information about diversityForest at CRAN
Permanent link
Title: Compositional Data Analysis
Description: Provides functions for the consistent analysis of compositional
data (e.g. portions of substances) and positive numbers (e.g. concentrations)
in the way proposed by J. Aitchison and V. Pawlowsky-Glahn.
Author: K. Gerald van den Boogaart <boogaart@hzdr.de>,
Raimon Tolosana-Delgado, Matevz Bren
Maintainer: K. Gerald van den Boogaart <support@boogaart.de>
Diff between compositions versions 2.0-2 dated 2021-07-14 and 2.0-4 dated 2022-01-05
ChangeLog | 28 ++++++++++---- DESCRIPTION | 10 ++--- MD5 | 25 ++++++------ NAMESPACE | 1 R/compositions.R | 30 +++++++++++++++ R/ctests.R | 63 ++++++++++++++++++++++++++++++++ R/tricks.R | 21 +++++++--- build/partial.rdb |binary inst/doc/UsingCompositions.pdf |binary man/asdataframe.Rd | 7 ++- man/kdeDirichlet.Rd |only man/rDirichlet.Rd | 25 +++++++++++- man/wrapped_functions.Rd | 22 +++++++---- src/compositions.c | 79 ++++++++++++++++++++++++----------------- 14 files changed, 235 insertions(+), 76 deletions(-)
Title: Import and Handling for 'WhatsApp' Chat Logs
Description: A straightforward, easy-to-use and robust parsing package which aims to
digest history files from the popular messenger service 'WhatsApp' in all locales
and from all devices.
Author: Johannes Gruber [aut, cre]
Maintainer: Johannes Gruber <Gruber@europa-uni.de>
Diff between rwhatsapp versions 0.2.3 dated 2020-09-19 and 0.2.4 dated 2022-01-05
DESCRIPTION | 16 MD5 | 36 +- NEWS.md | 5 R/emoji_lookup.R | 5 R/rwhatsapp.R | 4 README.md | 89 ++--- build/vignette.rds |binary inst/CITATION | 2 inst/WORDLIST | 7 inst/doc/Text_Analysis_using_WhatsApp_data.Rmd | 76 ++-- inst/doc/Text_Analysis_using_WhatsApp_data.html | 400 ++++++++++++------------ man/figures |only tests/testthat/test-rwhatsapp.R | 14 vignettes/Text_Analysis_using_WhatsApp_data.Rmd | 76 ++-- 14 files changed, 381 insertions(+), 349 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] (TinyThread library,
https://tinythreadpp.bitsnbites.eu/),
Hamada S. Badr [ctb] (<https://orcid.org/0000-0002-9808-2344>),
RStudio [cph],
Intel [aut, cph] (Intel TBB library,
https://www.threadingbuildingblocks.org/),
Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between RcppParallel versions 5.1.4 dated 2021-05-04 and 5.1.5 dated 2022-01-05
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 10 +++++++++- R/RcppParallel-package.R | 2 +- R/skeleton.R | 5 ++++- R/utils.R | 6 +++++- src/install.libs.R | 6 +++--- src/tbb/build/windows.gcc.inc | 2 +- tools/config/configure.R | 12 ++++++++++-- 9 files changed, 45 insertions(+), 22 deletions(-)
Title: Bhavcopy and Live Market Data from National Stock Exchange (NSE)
& Bombay Stock Exchange (BSE) India for Equities and Equity
Derivatives (F&O)
Description: Download Present & Historical Bhavcopy. Get Live Market data from NSE India of Equities and Derivatives(F&O) segment. Data source <https://www.nseindia.com/>.
Author: Nandan Patil [cre, aut]
Maintainer: Nandan Patil <tryanother609@gmail.com>
Diff between nser versions 1.3.4 dated 2021-10-27 and 1.4.0 dated 2022-01-05
DESCRIPTION | 15 ++--- MD5 | 78 ++++++++++++++++------------ NAMESPACE | 3 + R/bhav.R | 130 ++++++++++++++++++++++++++++++----------------- R/bhavtoday.R | 45 +++++++++++++--- R/daytomonth.R |only R/daytoweek.R | 2 R/fdii.R |only R/nseipo.R | 2 R/utils-pipe.R | 2 README.md | 33 +++++------ build/vignette.rds |binary inst/doc/bhav.Rmd | 15 ++++- inst/doc/bhav.html | 15 ++++- inst/doc/bhavtoday.Rmd | 12 +++- inst/doc/bhavtoday.html | 13 +++- inst/doc/dailydata.R |only inst/doc/dailydata.Rmd |only inst/doc/dailydata.html |only inst/doc/daytomonth.R |only inst/doc/daytomonth.Rmd |only inst/doc/daytomonth.html |only inst/doc/daytoweek.Rmd | 4 - inst/doc/daytoweek.html | 6 +- inst/doc/fdii.R |only inst/doc/fdii.Rmd |only inst/doc/fdii.html |only inst/doc/fobhav.html | 47 ++++++++-------- inst/doc/nseindex.Rmd | 2 inst/doc/nseindex.html | 120 +++++++++++++++++++++---------------------- inst/doc/nseipo.Rmd | 2 inst/doc/nseipo.html | 14 ++--- inst/doc/nselive.Rmd | 4 - inst/doc/nselive.html | 6 +- man/bhav.Rd | 15 +++-- man/bhavtoday.Rd | 15 ++++- man/daytomonth.Rd |only man/fdii.Rd |only man/nseipo.Rd | 2 vignettes/bhav.Rmd | 15 ++++- vignettes/bhavtoday.Rmd | 12 +++- vignettes/dailydata.Rmd |only vignettes/daytomonth.Rmd |only vignettes/daytoweek.Rmd | 4 - vignettes/fdii.Rmd |only vignettes/nseindex.Rmd | 2 vignettes/nseipo.Rmd | 2 vignettes/nselive.Rmd | 4 - 48 files changed, 394 insertions(+), 247 deletions(-)
Title: Landscape Meteorology Tools
Description: Functions to estimate weather variables at any position of a landscape [De Caceres et al. (2018) <doi:10.1016/j.envsoft.2018.08.003>].
Author: Miquel De Cáceres [aut, cre],
Nicolas Martin [aut],
Víctor Granda [aut],
Antoine Cabon [aut]
Maintainer: Miquel De Cáceres <miquelcaceres@gmail.com>
Diff between meteoland versions 1.0.1 dated 2021-11-29 and 1.0.2 dated 2022-01-05
DESCRIPTION | 12 ++--- MD5 | 28 ++++++------- NAMESPACE | 3 - NEWS.md | 4 + inst/doc/UserGuide.html | 69 ++++++++++++++++++---------------- man/SpatialGridMeteorology-class.Rd | 6 -- man/SpatialGridTopography-class.Rd | 3 - man/SpatialPixelsMeteorology-class.Rd | 3 - man/SpatialPixelsTopography-class.Rd | 3 - man/SpatialPointsMeteorology-class.Rd | 3 - man/SpatialPointsTopography-class.Rd | 3 - man/downloadAEMET.Rd | 2 man/downloadMETEOCLIMATIC.Rd | 6 -- man/downloadMG.Rd | 2 man/downloadSMC.Rd | 2 15 files changed, 79 insertions(+), 70 deletions(-)
Title: Multiomics Data Integration
Description: Provides functions to do 'O2PLS-DA' analysis for multiple omics data integration.
The algorithm came from "O2-PLS, a two-block (X±Y) latent variable regression (LVR) method with an integral OSC filter"
which published by Johan Trygg and Svante Wold at 2003 <doi:10.1002/cem.775>.
'O2PLS' is a bidirectional multivariate regression method that aims to separate the covariance between
two data sets (it was recently extended to multiple data sets) (Löfstedt and Trygg, 2011 <doi:10.1002/cem.1388>; Löfstedt et al., 2012 <doi:10.1016/j.aca.2013.06.026>)
from the systematic sources of variance being specific for each data set separately.
Author: Kai Guo [aut, cre],
Junguk Hur [aut],
Eva Feldman [aut]
Maintainer: Kai Guo <guokai8@gmail.com>
Diff between o2plsda versions 0.0.12 dated 2021-11-19 and 0.0.14 dated 2022-01-05
DESCRIPTION | 21 +++++++++++------ MD5 | 22 ++++++++--------- NAMESPACE | 2 - R/RcppExports.R | 40 ++++++-------------------------- R/misc.R | 24 +++++++++++++++++++ man/AtA.Rd | 2 - man/eigenmult.Rd | 2 - man/eigenthree.Rd | 2 - src/Makevars | 4 --- src/RcppExports.cpp | 64 +++++++++------------------------------------------- src/misc.cpp | 54 +------------------------------------------ src/oplsda.cpp | 19 ++++++++++++++- 12 files changed, 94 insertions(+), 162 deletions(-)
Title: Estimation Methods for Gravity Models
Description: A wrapper of different standard estimation methods for gravity models.
This package provides estimation methods for log-log models and multiplicative models.
Author: Anna-Lena Woelwer [aut, cph],
Jan Pablo Burgard [aut, cph],
Joshua Kunst [aut, cph],
Mauricio Vargas [aut, cre, cph]
(<https://orcid.org/0000-0003-1017-7574>),
Romain Francois [ctb] (adapted parts of the code to use dplyr 0.8.0),
Lionel Henry [ctb] (simplified parts of the code),
Sarah Johnson [ctb] (improved the double demeaning function),
Hrisyana Doytchinova [rev] (sent us different suggestions and bug
reports)
Maintainer: Mauricio Vargas <mv.sepulveda@mail.utoronto.ca>
Diff between gravity versions 0.9.9 dated 2020-07-27 and 1.0 dated 2022-01-05
DESCRIPTION | 48 - MD5 | 22 R/ddm.R | 28 build/partial.rdb |binary build/vignette.rds |binary inst/doc/crash-course-on-gravity-models.R | 234 ++-- inst/doc/crash-course-on-gravity-models.html | 1283 +++++++++++---------------- inst/doc/creating-gravity-datasets.R | 84 - inst/doc/creating-gravity-datasets.html | 642 +++++-------- man/gravity_no_zeros.Rd | 1 man/gravity_zeros.Rd | 1 tests/testthat/test-ddm.R | 11 12 files changed, 1025 insertions(+), 1329 deletions(-)
More information about GeoWeightedModel at CRAN
Permanent link
Title: Early Detection of Public Health Threats from Twitter Data
Description: It allows you to automatically monitor trends of tweets by time, place and topic aiming at detecting public health threats early through the detection of signals (e.g. an unusual increase in the number of tweets). It was designed to focus on infectious diseases, and it can be extended to all hazards or other fields of study by modifying the topics and keywords.
Author: Laura Espinosa [aut, fnd, cre]
(<https://orcid.org/0000-0003-0748-9657>, Project manager, author
of the design and concept of the package, and package maintainer),
Francisco Orchard [aut, ctr] (<https://orcid.org/0000-0001-5793-3301>,
Author of the package and original code),
Ariana Wijermans [ctb] (Contributor to the design and concept of the
package),
Thomas Mollet [ctb, fnd] (Business owner of the project, and
contributor to the design and concept of the package),
Adrian Prodan [ctb],
Thomas Czernichow [ctb],
Maria Prieto Gonzalez [ctb],
Esther Kissling [ctb],
Michael Höhle [ctb]
Maintainer: Laura Espinosa <laura.espinosa@ecdc.europa.eu>
Diff between epitweetr versions 0.1.28 dated 2021-04-08 and 2.0.3 dated 2022-01-05
epitweetr-0.1.28/epitweetr/man/aggregate_tweets.Rd |only epitweetr-0.1.28/epitweetr/man/geotag_tweets.Rd |only epitweetr-2.0.3/epitweetr/DESCRIPTION | 35 epitweetr-2.0.3/epitweetr/MD5 | 108 epitweetr-2.0.3/epitweetr/NAMESPACE | 14 epitweetr-2.0.3/epitweetr/R/aggregate.R | 1192 +- epitweetr-2.0.3/epitweetr/R/alert.R | 2193 +++-- epitweetr-2.0.3/epitweetr/R/check.R | 1043 +- epitweetr-2.0.3/epitweetr/R/config.R | 1288 +-- epitweetr-2.0.3/epitweetr/R/dataviz.R | 1727 ++-- epitweetr-2.0.3/epitweetr/R/fs.R |only epitweetr-2.0.3/epitweetr/R/geo-tagging.R | 1476 ++- epitweetr-2.0.3/epitweetr/R/globals.R | 6 epitweetr-2.0.3/epitweetr/R/migration.R |only epitweetr-2.0.3/epitweetr/R/paths.R | 302 epitweetr-2.0.3/epitweetr/R/scheduler.R | 1386 +-- epitweetr-2.0.3/epitweetr/R/search.R | 1072 +- epitweetr-2.0.3/epitweetr/R/shiny-app.R | 4076 ++++++---- epitweetr-2.0.3/epitweetr/R/spark-bridge.R | 590 - epitweetr-2.0.3/epitweetr/R/text-mining.R | 127 epitweetr-2.0.3/epitweetr/R/twitter-api.R | 344 epitweetr-2.0.3/epitweetr/build/vignette.rds |binary epitweetr-2.0.3/epitweetr/inst/doc/epitweetr-vignette.R | 376 epitweetr-2.0.3/epitweetr/inst/doc/epitweetr-vignette.Rmd | 2768 +++--- epitweetr-2.0.3/epitweetr/inst/doc/epitweetr-vignette.html | 2708 +++--- epitweetr-2.0.3/epitweetr/inst/extdata/alert-training.xlsx |only epitweetr-2.0.3/epitweetr/inst/extdata/detect.R | 26 epitweetr-2.0.3/epitweetr/inst/extdata/fs.R |only epitweetr-2.0.3/epitweetr/inst/extdata/geo-training.xlsx |only epitweetr-2.0.3/epitweetr/inst/extdata/mail.html | 38 epitweetr-2.0.3/epitweetr/inst/extdata/sbt-deps.txt | 446 - epitweetr-2.0.3/epitweetr/inst/extdata/search.R | 24 epitweetr-2.0.3/epitweetr/inst/extdata/subscribers.xlsx |binary epitweetr-2.0.3/epitweetr/inst/extdata/topics.xlsx |binary epitweetr-2.0.3/epitweetr/inst/java/README | 2 epitweetr-2.0.3/epitweetr/inst/java/ecdc-twitter-bundle_2.12-1.0.jar |binary epitweetr-2.0.3/epitweetr/inst/rmarkdown/dashboard.Rmd | 208 epitweetr-2.0.3/epitweetr/inst/rmarkdown/file23005a76b349.log |only epitweetr-2.0.3/epitweetr/inst/rmarkdown/file23007038f806.log |only epitweetr-2.0.3/epitweetr/java/README | 36 epitweetr-2.0.3/epitweetr/java/ecdc-twitter-bundle_2.12-1.0-source.zip |binary epitweetr-2.0.3/epitweetr/man/check_all.Rd | 6 epitweetr-2.0.3/epitweetr/man/create_map.Rd | 2 epitweetr-2.0.3/epitweetr/man/create_topchart.Rd |only epitweetr-2.0.3/epitweetr/man/create_topwords.Rd | 10 epitweetr-2.0.3/epitweetr/man/detect_loop.Rd | 8 epitweetr-2.0.3/epitweetr/man/ears_t_reweighted.Rd | 2 epitweetr-2.0.3/epitweetr/man/epitweetr_app.Rd | 2 epitweetr-2.0.3/epitweetr/man/fs_loop.Rd |only epitweetr-2.0.3/epitweetr/man/generate_alerts.Rd | 6 epitweetr-2.0.3/epitweetr/man/geolocate_text.Rd |only epitweetr-2.0.3/epitweetr/man/get_aggregates.Rd | 31 epitweetr-2.0.3/epitweetr/man/get_alerts.Rd | 20 epitweetr-2.0.3/epitweetr/man/get_tasks.Rd | 4 epitweetr-2.0.3/epitweetr/man/get_todays_sample_tweets.Rd | 13 epitweetr-2.0.3/epitweetr/man/health_check.Rd |only epitweetr-2.0.3/epitweetr/man/json2lucene.Rd |only epitweetr-2.0.3/epitweetr/man/register_fs_monitor.Rd |only epitweetr-2.0.3/epitweetr/man/search_tweets.Rd |only epitweetr-2.0.3/epitweetr/man/trend_line.Rd | 4 epitweetr-2.0.3/epitweetr/man/update_languages.Rd | 2 epitweetr-2.0.3/epitweetr/vignettes/epitweetr-vignette.Rmd | 2768 +++--- epitweetr-2.0.3/epitweetr/vignettes/epitweetr_refs.bib | 186 63 files changed, 14695 insertions(+), 11980 deletions(-)
Title: Normalize & Denoise Droplet Single Cell Protein Data (CITE-Seq)
Description: This lightweight R package provides a method for normalizing and denoising protein expression data from droplet based single cell experiments. Raw protein Unique Molecular Index (UMI) counts from sequencing DNA-conjugated antibodies in droplets (e.g. 'CITE-seq') have substantial measurement noise. Our experiments and computational modeling revealed two major components of this noise: 1) protein-specific noise originating from ambient, unbound antibody encapsulated in droplets that can be accurately inferred via the expected protein counts detected in empty droplets, and 2) droplet/cell-specific noise revealed via the shared variance component associated with isotype antibody controls and background protein counts in each cell. This package normalizes and removes both of these sources of noise from raw protein data derived from methods such as 'CITE-seq', 'REAP-seq', 'ASAP-seq', 'TEA-seq', 'proteogenomic' data from the Mission Bio platform, etc. See the vignette for tutorials on how to integrate dsb with 'Seurat', 'Bioconductor' and the AnnData class in 'Python'. Please also see our preprint Mulè M.P., Martins A.J., and Tsang J.S. (2020) <https://www.biorxiv.org/content/10.1101/2020.02.24.963603v3> for more details on the dsb method.
Author: Matthew Mulè [aut, cre] (<https://orcid.org/0000-0001-8457-2716>),
Andrew Martins [aut] (<https://orcid.org/0000-0002-1832-1924>),
John Tsang [pdr] (<https://orcid.org/0000-0003-3186-3047>)
Maintainer: Matthew Mulè <mattmule@gmail.com>
Diff between dsb versions 0.2.0 dated 2021-09-02 and 0.3.0 dated 2022-01-05
DESCRIPTION | 8 - MD5 | 12 +- NEWS.md | 44 +++++++++ R/dsb.r | 166 ++++++++++++++++++++++++++----------- README.md | 6 + man/DSBNormalizeProtein.Rd | 3 tests/testthat/test_dsb_function.R | 119 +++++++++++++------------- 7 files changed, 242 insertions(+), 116 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-03 2.1.1
2012-08-03 2.1
2012-07-17 2.0
2012-02-01 1.0
Title: Bias and Precision Plots
Description: Implementation of the methodology from the paper entitled
"Effective plots to assess bias and precision in method comparison studies"
published in Statistical Methods in Medical Research, P. Taffé (2018) <doi:10.1177/0962280218759693>.
Author: Mingkai Peng, Patrick Taffé, Tyler Williamson
Maintainer: Patrick Taffé <patrick.taffe@unisante.ch>
Diff between MethodCompare versions 0.1.1 dated 2021-11-22 and 0.1.2 dated 2022-01-05
MethodCompare-0.1.1/MethodCompare/R/compare_plot.R |only MethodCompare-0.1.2/MethodCompare/DESCRIPTION | 8 +- MethodCompare-0.1.2/MethodCompare/MD5 | 12 +-- MethodCompare-0.1.2/MethodCompare/R/Compare_plot.R |only MethodCompare-0.1.2/MethodCompare/R/bias_plot.R | 28 ++++++- MethodCompare-0.1.2/MethodCompare/R/bland_altman_plot.R | 42 ++++++++-- MethodCompare-0.1.2/MethodCompare/R/measure_compare.R | 63 +++++++++++++--- MethodCompare-0.1.2/MethodCompare/R/precision_plot.R | 24 +++++- 8 files changed, 147 insertions(+), 30 deletions(-)
Title: Functions and Datasets for the Book by Keon-Woong Moon
Description: Several analysis-related functions for the book entitled "R
statistics and graph for medical articles" (written in Korean), version 1,
by Keon-Woong Moon with Korean demographic data with several plot
functions.
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>
Diff between moonBook versions 0.2.4 dated 2021-01-08 and 0.3.1 dated 2022-01-05
DESCRIPTION | 12 MD5 | 44 +- NAMESPACE | 1 NEWS | 47 ++ R/ORplot.R | 43 ++ R/mycph.R | 100 +++--- R/mytable.R | 130 +++++-- R/mytable.df.R | 67 ++-- README.md | 10 build/vignette.rds |binary inst/doc/moonBook.Rmd | 10 inst/doc/moonBook.html | 693 +++++++++++++---------------------------- inst/doc/moonBook_update.Rmd | 6 inst/doc/moonBook_update.html | 694 +++++++++++++----------------------------- man/extractHR.Rd | 6 man/extractOR.Rd | 5 man/mycph.Rd | 2 man/mytable2.Rd | 11 man/mytable_df.Rd | 6 man/mytable_sub.Rd | 12 man/mytable_sub2.Rd | 5 vignettes/moonBook.Rmd | 10 vignettes/moonBook_update.Rmd | 6 23 files changed, 822 insertions(+), 1098 deletions(-)
Title: Tidy Data and 'Geoms' for Bayesian Models
Description: Compose data for and extract, manipulate, and visualize posterior draws from Bayesian models
('JAGS', 'Stan', 'rstanarm', 'brms', 'MCMCglmm', 'coda', ...) in a tidy data format. Functions are provided
to help extract tidy data frames of draws from Bayesian models and that generate point
summaries and intervals in a tidy format. In addition, 'ggplot2' 'geoms' and 'stats' are provided for
common visualization primitives like points with multiple uncertainty intervals, eye plots (intervals plus
densities), and fit curves with multiple, arbitrary uncertainty bands.
Author: Matthew Kay [aut, cre],
Timothy Mastny [ctb]
Maintainer: Matthew Kay <mjskay@northwestern.edu>
Diff between tidybayes versions 3.0.1 dated 2021-08-22 and 3.0.2 dated 2022-01-05
DESCRIPTION | 10 MD5 | 93 ++-- NEWS.md | 8 R/add_draws.R | 43 -- R/compose_data.R | 720 ++++++++++++++++++---------------- R/density_bins.R | 41 - R/deprecated.R | 50 ++ R/emmeans_comparison.R | 41 - R/flip_aes.R | 103 ++-- R/gather_emmeans_draws.R | 73 +-- R/nest_rvars.R | 13 R/predicted_draws.R | 67 +-- R/predicted_rvars.R | 90 +--- R/recover_types.R | 124 ++--- R/residual_draws.R | 2 R/sample_draws.R | 41 - R/spread_draws.R | 12 R/spread_rvars.R | 8 R/tidy_draws.R | 6 R/ungather_draws.R | 4 R/unspread_draws.R | 2 R/util.R | 25 - R/x_at_y.R | 174 ++++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/tidy-brms.html | 4 inst/doc/tidy-posterior.html | 38 - inst/doc/tidy-rstanarm.html | 4 inst/doc/tidybayes-residuals.html | 4 inst/doc/tidybayes.html | 208 ++++----- man/add_draws.Rd | 41 - man/add_predicted_draws.Rd | 67 +-- man/add_predicted_rvars.Rd | 90 ++-- man/density_bins.Rd | 41 - man/emmeans_comparison.Rd | 42 - man/gather_emmeans_draws.Rd | 73 +-- man/nest_rvars.Rd | 2 man/recover_types.Rd | 124 ++--- man/sample_draws.Rd | 41 - tests/testthat/test.add_draws.R | 19 tests/testthat/test.epred_draws.R | 10 tests/testthat/test.epred_rvars.R | 7 tests/testthat/test.linpred_draws.R | 6 tests/testthat/test.nest_rvars.R | 63 ++ tests/testthat/test.predicted_draws.R | 4 tests/testthat/test.predicted_rvars.R | 4 tests/testthat/test.sample_draws.R |only tests/testthat/test.spread_draws.R | 8 48 files changed, 1408 insertions(+), 1242 deletions(-)
Title: Resampling Methods for Triangular and Trapezoidal Fuzzy Numbers
Description: The classical (i.e. Efron's, see Efron and Tibshirani (1994, ISBN:978-0412042317) "An Introduction to the Bootstrap") bootstrap is widely used for both the real (i.e. "crisp") and fuzzy data.
The main aim of the algorithms implemented in this package is to overcome a problem with repetition of a few distinct values and to create fuzzy numbers, which are "similar" (but not the same) to values from the initial sample.
To do this, different characteristics of triangular/trapezoidal numbers are kept (like the value, the ambiguity, etc., see Grzegorzewski et al. <doi:10.2991/eusflat-19.2019.68>, Grzegorzewski et al. (2020) <doi:10.2991/ijcis.d.201012.003>, Grzegorzewski et al. (2020) <doi:10.34768/amcs-2020-0022>, Romaniuk and Hryniewicz (2019) <doi:10.1007/s00500-018-3251-5>).
Some additional procedures related to these resampling methods are also provided,
like calculation of the Bertoluzza et al.'s distance (aka the mid/spread distance, see Bertoluzza et al. (1995) "On a new class of distances between fuzzy numbers")
and estimation of the p-value of the one-sample bootstrapped test for the mean (see Lubiano et al. (2016, <doi:10.1016/j.ejor.2015.11.016>)).
Additionally, there are procedures which randomly generate trapezoidal fuzzy numbers using some well-known statistical distributions.
Author: Maciej Romaniuk [cre],
Przemyslaw Grzegorzewski [aut],
Olgierd Hryniewicz [aut]
Maintainer: Maciej Romaniuk <mroman@ibspan.waw.pl>
Diff between FuzzyResampling versions 0.3.1 dated 2021-12-14 and 0.4.0 dated 2022-01-05
DESCRIPTION | 6 +++--- MD5 | 18 ++++++++++-------- NAMESPACE | 1 + NEWS.md | 5 +++++ R/FuzzyResampling-package.R | 30 +++++++++++++++++++++++------- R/OneSampleCTest.R | 7 +++++-- R/TwoSampleCTest.R |only README.md | 19 +++++++++++++++++++ man/FuzzyResampling-package.Rd | 10 +++++++++- man/OneSampleCTest.Rd | 11 +++++++++-- man/TwoSampleCTest.Rd |only 11 files changed, 84 insertions(+), 23 deletions(-)
More information about FuzzyResampling at CRAN
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