Sun, 16 Jan 2022

Package nzffdr updated to version 2.0.0 with previous version 1.0.0 dated 2021-03-09

Title: Import, Clean and Update Data from the New Zealand Freshwater Fish Database
Description: Access the New Zealand Freshwater Fish Database from R and a few functions to clean the data once in R.
Author: Finnbar Lee [aut, cre], Nick Young [aut]
Maintainer: Finnbar Lee <lee.finnbar@gmail.com>

Diff between nzffdr versions 1.0.0 dated 2021-03-09 and 2.0.0 dated 2022-01-16

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Package fxTWAPLS updated to version 0.1.0 with previous version 0.0.7 dated 2021-09-01

Title: An Improved Version of WA-PLS
Description: The goal of this package is to provide an improved version of WA-PLS (Weighted Averaging Partial Least Squares) by including the tolerances of taxa and the frequency of the sampled climate variable. This package also provides a way of leave-out cross-validation that removes both the test site and sites that are both geographically close and climatically close for each cycle, to avoid the risk of pseudo-replication.
Author: Mengmeng Liu [aut] (<https://orcid.org/0000-0001-6250-0148>), Iain Colin Prentice [aut] (<https://orcid.org/0000-0002-1296-6764>), Cajo J. F. ter Braak [aut] (<https://orcid.org/0000-0002-0414-8745>), Sandy P. Harrison [aut] (<https://orcid.org/0000-0001-5687-1903>), Roberto Villegas-Diaz [aut, cre] (<https://orcid.org/0000-0001-5036-8661>), SPECIAL Research Group @ University of Reading [cph]
Maintainer: Roberto Villegas-Diaz <r.villegas-diaz@reading.ac.uk>

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Package googlePubsubR updated to version 0.0.3 with previous version 0.0.2 dated 2021-11-26

Title: R Interface for Google 'Cloud Pub/Sub' REST API
Description: Provides an easy to use interface to the 'Google Pub/Sub' REST API <https://cloud.google.com/pubsub/docs/reference/rest>.
Author: Andrea Dodet [aut, cre]
Maintainer: Andrea Dodet <andodet@gmail.com>

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Package DHARMa updated to version 0.4.5 with previous version 0.4.4 dated 2021-09-28

Title: Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models
Description: The 'DHARMa' package uses a simulation-based approach to create readily interpretable scaled (quantile) residuals for fitted (generalized) linear mixed models. Currently supported are linear and generalized linear (mixed) models from 'lme4' (classes 'lmerMod', 'glmerMod'), 'glmmTMB' 'GLMMadaptive' and 'spaMM', generalized additive models ('gam' from 'mgcv'), 'glm' (including 'negbin' from 'MASS', but excluding quasi-distributions) and 'lm' model classes. Moreover, externally created simulations, e.g. posterior predictive simulations from Bayesian software such as 'JAGS', 'STAN', or 'BUGS' can be processed as well. The resulting residuals are standardized to values between 0 and 1 and can be interpreted as intuitively as residuals from a linear regression. The package also provides a number of plot and test functions for typical model misspecification problems, such as over/underdispersion, zero-inflation, and residual spatial and temporal autocorrelation.
Author: Florian Hartig [aut, cre] (<https://orcid.org/0000-0002-6255-9059>), Lukas Lohse [ctb]
Maintainer: Florian Hartig <florian.hartig@biologie.uni-regensburg.de>

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Package MazamaLocationUtils updated to version 0.3.1 with previous version 0.2.7 dated 2021-11-16

Title: Manage Spatial Metadata for Known Locations
Description: Utility functions for discovering and managing metadata associated with spatially unique "known locations". Applications include all fields of environmental monitoring (e.g. air and water quality) where data are collected at stationary sites.
Author: Jonathan Callahan [aut, cre], Eli Grosman [ctb], Oliver Fogelin [ctb]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>

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Package GWASinspector updated to version 1.5.7.1 with previous version 1.5.2 dated 2021-03-22

Title: Comprehensive and Easy to Use Quality Control of GWAS Results
Description: When evaluating the results of a genome-wide association study (GWAS), it is important to perform a quality control to ensure that the results are valid, complete, correctly formatted, and, in case of meta-analysis, consistent with other studies that have applied the same analysis. This package was developed to facilitate and streamline this process and provide the user with a comprehensive report.
Author: Alireza Ani [aut, cre], Peter J. van der Most [aut], Ahmad Vaez [aut], Ilja M. Nolte [aut]
Maintainer: Alireza Ani <a.ani@umcg.nl>

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Package cffr updated to version 0.2.1 with previous version 0.2.0 dated 2022-01-04

Title: Generate Citation File Format ('cff') Metadata for R Packages
Description: The Citation File Format version 1.2.0 <doi:10.5281/zenodo.5171937> is a human and machine readable file format which provides citation metadata for software. This package provides core utilities to generate and validate this metadata.
Author: Diego Hernangómez [aut, cre, cph] (<https://orcid.org/0000-0001-8457-4658>), João Martins [rev] (<https://orcid.org/0000-0001-7961-4280>), Scott Chamberlain [rev] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>

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Package subplex updated to version 1.7 with previous version 1.6 dated 2020-02-23

Title: Unconstrained Optimization using the Subplex Algorithm
Description: The subplex algorithm for unconstrained optimization, developed by Tom Rowan <http://www.netlib.org/opt/subplex.tgz>.
Author: Aaron A. King [aut, trl, cre], Tom Rowan [aut]
Maintainer: Aaron A. King <kingaa@umich.edu>

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Package worldfootballR updated to version 0.4.9 with previous version 0.4.8 dated 2022-01-05

Title: Functions to Extract and Clean World Football (Soccer) Data
Description: A set of functions to allow users to obtain clean and tidy football (soccer) game, team and player data. Data is collected from a number of popular sites, including 'FBref'<https://fbref.com/en/>, transfer and valuations data from 'Transfermarkt'<https://www.transfermarkt.com/> and shooting location data from 'Understat'<https://understat.com/>. It gives users the ability to access data more efficiently, rather than having to export data tables to files before being able to complete their analysis.
Author: Jason Zivkovic [aut, cre, cph], Tony ElHabr [ctb]
Maintainer: Jason Zivkovic <jaseziv83@gmail.com>

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Package clustra updated to version 0.1.6 with previous version 0.1.5 dated 2021-11-22

Title: Clustering Longitudinal Trajectories
Description: Clusters longitudinal trajectories over time (can be unequally spaced, unequal length time series and/or partially overlapping series) on a common time axis. Performs k-means clustering on a single continuous variable measured over time, where each mean is defined by a thin plate spline fit to all points in a cluster. Distance is MSE across trajectory points to cluster spline. Provides graphs of derived cluster splines, silhouette plots, and Adjusted Rand Index evaluations of the number of clusters. Scales well to large data with multicore parallelism available to speed computation.
Author: George Ostrouchov [aut, cre], David Gagnon [aut], Hanna Gerlovin [aut], Chen Wei-Chen [ctb], Schmidt Drew [ctb], Oak Ridge National Laboratory [cph], U.S. Department of Veteran's Affairs [fnd] (Project: Million Veteran Program Data Core)
Maintainer: George Ostrouchov <ostrouchovg@ornl.gov>

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Package cloudstoR updated to version 0.2.0 with previous version 0.1.0 dated 2021-08-06

Title: Simplifies Access to Cloudstor API
Description: Access Cloudstor via their WebDAV API. This package can read, write, and navigate Cloudstor from R.
Author: Taren Sanders [aut, cre] (<https://orcid.org/0000-0002-4504-6008>), Philip Parker [aut] (<https://orcid.org/0000-0002-4604-8566>), Timothy Churches [aut]
Maintainer: Taren Sanders <taren.sanders@acu.edu.au>

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 cloudstoR-0.1.0/cloudstoR/tests/testthat/test-cloudstorapi-auth.R   |only
 cloudstoR-0.2.0/cloudstoR/DESCRIPTION                               |   13 
 cloudstoR-0.2.0/cloudstoR/MD5                                       |   42 -
 cloudstoR-0.2.0/cloudstoR/NAMESPACE                                 |   16 
 cloudstoR-0.2.0/cloudstoR/NEWS.md                                   |only
 cloudstoR-0.2.0/cloudstoR/R/cloudstoR-package.R                     |   16 
 cloudstoR-0.2.0/cloudstoR/R/cloudstorapi-access.R                   |  148 +++--
 cloudstoR-0.2.0/cloudstoR/R/cloudstorapi-auth.R                     |   20 
 cloudstoR-0.2.0/cloudstoR/README.md                                 |  288 +++++-----
 cloudstoR-0.2.0/cloudstoR/man/cloud_auth.Rd                         |   35 -
 cloudstoR-0.2.0/cloudstoR/man/cloud_auth_pwd.Rd                     |   31 -
 cloudstoR-0.2.0/cloudstoR/man/cloud_auth_user.Rd                    |   31 -
 cloudstoR-0.2.0/cloudstoR/man/cloud_browse.Rd                       |   56 +
 cloudstoR-0.2.0/cloudstoR/man/cloud_get.Rd                          |   68 +-
 cloudstoR-0.2.0/cloudstoR/man/cloud_list.Rd                         |   42 -
 cloudstoR-0.2.0/cloudstoR/man/cloud_meta.Rd                         |   43 -
 cloudstoR-0.2.0/cloudstoR/man/cloud_put.Rd                          |   64 +-
 cloudstoR-0.2.0/cloudstoR/man/cloudstoR-package.Rd                  |   51 +
 cloudstoR-0.2.0/cloudstoR/man/figures                               |only
 cloudstoR-0.2.0/cloudstoR/man/get_cloud_address.Rd                  |   35 -
 cloudstoR-0.2.0/cloudstoR/man/get_handle.Rd                         |   43 -
 cloudstoR-0.2.0/cloudstoR/tests/testthat.R                          |    9 
 cloudstoR-0.2.0/cloudstoR/tests/testthat/helper.R                   |only
 cloudstoR-0.2.0/cloudstoR/tests/testthat/test-cloudstorapi-access.R |   85 ++
 24 files changed, 642 insertions(+), 494 deletions(-)

More information about cloudstoR at CRAN
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Package drought updated to version 1.1 with previous version 1.0 dated 2020-10-24

Title: Statistical Modeling and Assessment of Drought
Description: Provide tools for drought monitoring based on univariate and multivariate drought indicators.Statistical drought prediction based on Ensemble Streamflow Prediction (ESP), drought risk assessments, and drought propagation are also provided. Please see Hao Zengchao et al. (2017) <doi:10.1016/j.envsoft.2017.02.008>.
Author: Zengchao Hao, Zhang Yu
Maintainer: Zengchao Hao <z.hao4univ@gmail.com>

Diff between drought versions 1.0 dated 2020-10-24 and 1.1 dated 2022-01-16

 drought-1.0/drought/R/MDI.R                |only
 drought-1.0/drought/man/MDI.Rd             |only
 drought-1.1/drought/DESCRIPTION            |   17 +++++------
 drought-1.1/drought/MD5                    |   42 +++++++++++++++--------------
 drought-1.1/drought/NAMESPACE              |    4 ++
 drought-1.1/drought/R/ACCU.R               |    2 -
 drought-1.1/drought/R/BiEmp.R              |   10 +++---
 drought-1.1/drought/R/ESPPred.R            |    8 ++---
 drought-1.1/drought/R/JDSI.R               |   15 ++++++----
 drought-1.1/drought/R/MSDI.R               |only
 drought-1.1/drought/R/PropagationMCC.R     |only
 drought-1.1/drought/R/RunDS.R              |only
 drought-1.1/drought/R/SDI.R                |    8 ++---
 drought-1.1/drought/R/UMFreq.R             |   12 ++++----
 drought-1.1/drought/R/UniEmp.R             |    4 +-
 drought-1.1/drought/man/ACCU.Rd            |    2 -
 drought-1.1/drought/man/BiEmp.Rd           |   10 +++---
 drought-1.1/drought/man/ESPPred.Rd         |    8 ++---
 drought-1.1/drought/man/JDSI.Rd            |   17 ++++++-----
 drought-1.1/drought/man/MSDI.Rd            |only
 drought-1.1/drought/man/PropagationMCC.Rd  |only
 drought-1.1/drought/man/RunDS.Rd           |only
 drought-1.1/drought/man/SDI.Rd             |    6 ++--
 drought-1.1/drought/man/UMFreq.Rd          |   14 ++++-----
 drought-1.1/drought/man/UniEmp.Rd          |    4 +-
 drought-1.1/drought/man/drought-package.Rd |   33 +++++++++++++---------
 26 files changed, 116 insertions(+), 100 deletions(-)

More information about drought at CRAN
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Package themetagenomics (with last version 1.0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-04-30 1.0.2
2020-04-14 1.0.1

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