Title: Tool For Analysis of Images in Experiments
Description: Tools created for image analysis in researches. There are functions associated with image editing, segmentation, and obtaining biometric measurements (Este pacote foi idealizado para para a analise de imagens em pesquisas. Ha funcoes associadas a edicao de imagens, segmentacao, e obtencao de medidas biometricas).
Author: Alcinei Mistico Azevedo [aut, cre]
(<https://orcid.org/0000-0001-5196-0851>)
Maintainer: Alcinei Mistico Azevedo <alcineimistico@hotmail.com>
Diff between ExpImage versions 0.3.0 dated 2021-12-11 and 0.4.0 dated 2022-01-22
DESCRIPTION | 10 - MD5 | 135 ++++++++++------- NAMESPACE | 15 + NEWS.md | 20 ++ R/Normatiza.R | 2 R/as_image.R |only R/calibration_palette.R |only R/clustering_Kmeans.R |only R/compare_image.R |only R/contour_image.R | 5 R/crop_image.R | 65 ++++++-- R/getwd_script.R |only R/gray_scale.R | 18 ++ R/histogram_image.R |only R/index_bands.R |only R/info_image.R |only R/join_bands.R |only R/join_image.R | 144 +++++++++++++----- R/linearize_image.R |only R/mask_pixels.R | 89 +++++++---- R/measure_image.R | 80 +++++++--- R/pick_color.R | 2 R/pick_palette.R |only R/plot_image.R | 44 ++++- R/plot_meansures.R | 46 +++++- R/predict_logit.R | 7 R/read_image.R | 61 +++++++ R/resize_image.R | 10 + R/segmentation.R | 11 - R/segmentation_logit.R | 14 + R/segmentation_logitGUI.R | 2 R/setwd_script.R |only R/shape_file.BorderExtract.R | 2 R/shape_file.create.R | 12 + R/shape_file.split.R | 2 R/split_image.R | 53 +++--- R/zzz.R | 21 ++ build/vignette.rds |binary inst/doc/Comprimento_Plantula.R | 4 inst/doc/Comprimento_Plantula.Rmd | 4 inst/doc/Comprimento_Plantula.html | 59 ++++--- inst/doc/Contagem_de_bovinos.R | 2 inst/doc/Contagem_de_bovinos.Rmd | 2 inst/doc/Contagem_de_bovinos.html | 180 +++++++++++------------ inst/doc/Contagem_de_objetos.R | 1 inst/doc/Contagem_de_objetos.Rmd | 3 inst/doc/Contagem_de_objetos.html | 38 ++-- inst/doc/Edicao_de_imagens.R | 2 inst/doc/Edicao_de_imagens.Rmd | 2 inst/doc/Edicao_de_imagens.html | 8 - inst/doc/Estimacao_Area_Foliar.html | 260 +++++++++++++++++----------------- inst/doc/Estimar_doenca_Amendoim.R | 7 inst/doc/Estimar_doenca_Amendoim.Rmd | 7 inst/doc/Estimar_doenca_Amendoim.html | 13 + man/as_image.Rd |only man/clustering_Kmeans.Rd |only man/compare_image.Rd |only man/crop_image.Rd | 7 man/getwd_script.Rd |only man/gray_scale.Rd | 7 man/histogram_image.Rd |only man/index_bands.Rd |only man/info_image.Rd |only man/join_bands.Rd |only man/join_image.Rd | 75 ++++++--- man/linearize_image.Rd |only man/mask_pixels.Rd | 18 +- man/pick_palette.Rd |only man/plot_image.Rd | 5 man/plot_meansures.Rd | 27 +++ man/read_image.Rd | 8 - man/resize_image.Rd | 2 man/setwd_script.Rd |only man/shape_file.BorderExtract.Rd | 2 man/shape_file.create.Rd | 11 + vignettes/Comprimento_Plantula.Rmd | 4 vignettes/Contagem_de_bovinos.Rmd | 2 vignettes/Contagem_de_objetos.Rmd | 3 vignettes/Edicao_de_imagens.Rmd | 2 vignettes/Estimar_doenca_Amendoim.Rmd | 7 80 files changed, 1083 insertions(+), 559 deletions(-)
Title: Recommended Learners for 'mlr3'
Description: Recommended Learners for 'mlr3'. Extends 'mlr3' and
'mlr3proba' with interfaces to essential machine learning packages on
CRAN. This includes, but is not limited to: (penalized) linear and
logistic regression, linear and quadratic discriminant analysis,
k-nearest neighbors, naive Bayes, support vector machines, and
gradient boosting.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Quay Au [aut] (<https://orcid.org/0000-0002-5252-8902>),
Stefan Coors [aut] (<https://orcid.org/0000-0002-7465-2146>),
Patrick Schratz [aut] (<https://orcid.org/0000-0003-0748-6624>)
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3learners versions 0.5.1 dated 2021-11-19 and 0.5.2 dated 2022-01-22
DESCRIPTION | 8 - MD5 | 82 +++++++++---------- NEWS.md | 6 + R/LearnerClassifCVGlmnet.R | 4 R/LearnerClassifGlmnet.R | 4 R/LearnerClassifSVM.R | 2 R/LearnerClassifXgboost.R | 3 R/LearnerRegrCVGlmnet.R | 6 - R/LearnerRegrGlmnet.R | 6 - R/LearnerRegrKM.R | 4 R/LearnerRegrSVM.R | 2 R/LearnerRegrXgboost.R | 6 + R/LearnerSurvCVGlmnet.R | 4 R/LearnerSurvGlmnet.R | 4 R/LearnerSurvXgboost.R | 2 R/helpers.R | 3 build/partial.rdb |binary man/mlr_learners_classif.cv_glmnet.Rd | 86 +++++++++---------- man/mlr_learners_classif.glmnet.Rd | 74 ++++++++--------- man/mlr_learners_classif.kknn.Rd | 12 +- man/mlr_learners_classif.lda.Rd | 16 +-- man/mlr_learners_classif.log_reg.Rd | 26 +++--- man/mlr_learners_classif.multinom.Rd | 38 ++++---- man/mlr_learners_classif.naive_bayes.Rd | 10 +- man/mlr_learners_classif.nnet.Rd | 34 +++---- man/mlr_learners_classif.qda.Rd | 12 +- man/mlr_learners_classif.ranger.Rd | 60 ++++++------- man/mlr_learners_classif.svm.Rd | 34 +++---- man/mlr_learners_classif.xgboost.Rd | 135 ++++++++++++++++--------------- man/mlr_learners_regr.cv_glmnet.Rd | 88 ++++++++++---------- man/mlr_learners_regr.glmnet.Rd | 84 +++++++++---------- man/mlr_learners_regr.kknn.Rd | 12 +- man/mlr_learners_regr.km.Rd | 58 ++++++------- man/mlr_learners_regr.lm.Rd | 24 ++--- man/mlr_learners_regr.ranger.Rd | 60 ++++++------- man/mlr_learners_regr.svm.Rd | 30 +++--- man/mlr_learners_regr.xgboost.Rd | 138 ++++++++++++++++---------------- man/mlr_learners_surv.cv_glmnet.Rd | 86 +++++++++---------- man/mlr_learners_surv.glmnet.Rd | 80 +++++++++--------- man/mlr_learners_surv.ranger.Rd | 54 ++++++------ man/mlr_learners_surv.xgboost.Rd | 123 ++++++++++++++-------------- tests/testthat.R | 4 42 files changed, 776 insertions(+), 748 deletions(-)
Title: Complex Matrix Algebra with 'Eigen'
Description: Matrix algebra using the 'Eigen' C++ library: determinant, rank, inverse, pseudo-inverse, kernel and image, QR decomposition, Cholesky decomposition, linear least-squares problems. Also provides matrix functions such as exponential, logarithm, power, sine and cosine. Complex matrices are supported.
Author: Stéphane Laurent
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between EigenR versions 1.2.1 dated 2022-01-21 and 1.2.2 dated 2022-01-22
EigenR-1.2.1/EigenR/src/EigenR.cpp |only EigenR-1.2.2/EigenR/DESCRIPTION | 6 EigenR-1.2.2/EigenR/MD5 | 22 - EigenR-1.2.2/EigenR/NEWS.md | 5 EigenR-1.2.2/EigenR/R/RcppExports.R | 152 ++++---- EigenR-1.2.2/EigenR/src/Cholesky.cpp |only EigenR-1.2.2/EigenR/src/Determinant.cpp |only EigenR-1.2.2/EigenR/src/EigenR.h |only EigenR-1.2.2/EigenR/src/Image.cpp |only EigenR-1.2.2/EigenR/src/Inverse.cpp |only EigenR-1.2.2/EigenR/src/Kernel.cpp |only EigenR-1.2.2/EigenR/src/LeastSquares.cpp |only EigenR-1.2.2/EigenR/src/MatricialFunctions.cpp |only EigenR-1.2.2/EigenR/src/QR.cpp |only EigenR-1.2.2/EigenR/src/Rank.cpp |only EigenR-1.2.2/EigenR/src/RcppExports.cpp | 474 ++++++++++++------------- EigenR-1.2.2/EigenR/src/Sparse.cpp |only EigenR-1.2.2/EigenR/src/Utils.cpp |only EigenR-1.2.2/EigenR/src/inj_surj_inv.cpp |only 19 files changed, 338 insertions(+), 321 deletions(-)
Title: Advanced and Fast Data Transformation
Description: A C/C++ based package for advanced data transformation and
statistical computing in R that is extremely fast, flexible and
parsimonious to code with, class-agnostic and programmer friendly.
It is well integrated with base R, 'dplyr' / (grouped) 'tibble',
'data.table', 'plm' (panel-series and data frames), 'sf' data frames, and
non-destructively handles other matrix or data frame based classes (such as
'ts', 'xts' / 'zoo', 'timeSeries', 'tsibble', 'tibbletime' etc.)
--- Key Features: ---
(1) Advanced statistical programming: A full set of fast statistical functions
supporting grouped and weighted computations on vectors, matrices and
data frames. Fast and programmable grouping, ordering, unique values / rows,
factor generation and interactions. Fast and flexible functions for data
manipulation, data object conversions, and memory efficient R programming.
(2) Advanced aggregation: Fast and easy multi-data-type, multi-function,
weighted, parallelized and fully custom data aggregation.
(3) Advanced transformations: Fast row / column arithmetic, (grouped) replacing
and sweeping out of statistics, (grouped, weighted) scaling / standardizing,
between (averaging) and (quasi-)within (demeaning) transformations,
higher-dimensional centering (i.e. multiple fixed effects or polynomials),
linear prediction, model fitting and testing exclusion restrictions.
(4) Advanced time-computations: Fast (sequences of) lags / leads, and
(lagged / leaded, iterated, quasi-, log-) differences and (compounded)
growth rates on (irregular) time series and panel data.
Multivariate auto-, partial- and cross-correlation functions for panel data.
Panel data to (ts-)array conversions.
(5) List processing: (Recursive) list search, splitting,
extraction / subsetting, data-apply, and generalized recursive
row-binding / unlisting in 2D.
(6) Advanced data exploration: Fast (grouped, weighted, panel-decomposed)
summary statistics for complex multilevel / panel data.
Author: Sebastian Krantz [aut, cre],
Matt Dowle [ctb],
Arun Srinivasan [ctb],
Morgan Jacob [ctb],
Dirk Eddelbuettel [ctb],
Laurent Berge [ctb],
Josh Pasek [ctb],
Kevin Tappe [ctb],
R Core Team and contributors worldwide [ctb],
Martyn Plummer [cph],
1999-2016 The R Core Team [cph]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between collapse versions 1.7.0 dated 2022-01-14 and 1.7.2 dated 2022-01-22
collapse-1.7.0/collapse/R/fndistinct.R |only collapse-1.7.0/collapse/man/fndistinct.Rd |only collapse-1.7.0/collapse/man/fnobs.Rd |only collapse-1.7.2/collapse/DESCRIPTION | 20 - collapse-1.7.2/collapse/MD5 | 116 +++---- collapse-1.7.2/collapse/NEWS.md | 25 + collapse-1.7.2/collapse/R/GRP.R | 2 collapse-1.7.2/collapse/R/RcppExports.R | 12 collapse-1.7.2/collapse/R/fNdistinct.R |only collapse-1.7.2/collapse/R/ffirst.R | 21 - collapse-1.7.2/collapse/R/flast.R | 21 - collapse-1.7.2/collapse/R/fmean.R | 21 - collapse-1.7.2/collapse/R/fmin_fmax.R | 42 -- collapse-1.7.2/collapse/R/fmode.R | 29 - collapse-1.7.2/collapse/R/fnobs.R | 21 - collapse-1.7.2/collapse/R/fnth_fmedian.R | 42 -- collapse-1.7.2/collapse/R/fprod.R | 21 - collapse-1.7.2/collapse/R/fsubset_ftransform.R | 13 collapse-1.7.2/collapse/R/fsum.R | 21 - collapse-1.7.2/collapse/R/fsummarise.R | 3 collapse-1.7.2/collapse/R/fvar_fsd.R | 42 -- collapse-1.7.2/collapse/R/my_RcppExports.R | 12 collapse-1.7.2/collapse/R/psacf.R | 119 +++----- collapse-1.7.2/collapse/R/qsu.R | 149 ++-------- collapse-1.7.2/collapse/inst/doc/collapse_documentation.html | 4 collapse-1.7.2/collapse/man/BY.Rd | 13 collapse-1.7.2/collapse/man/GRP.Rd | 16 - collapse-1.7.2/collapse/man/across.Rd | 23 - collapse-1.7.2/collapse/man/arithmetic.Rd | 9 collapse-1.7.2/collapse/man/collap.Rd | 19 - collapse-1.7.2/collapse/man/collapse-package.Rd | 2 collapse-1.7.2/collapse/man/fNdistinct.Rd |only collapse-1.7.2/collapse/man/fNobs.Rd |only collapse-1.7.2/collapse/man/fast-grouping.Rd | 5 collapse-1.7.2/collapse/man/fast-statistical-functions.Rd | 16 - collapse-1.7.2/collapse/man/fcumsum.Rd | 11 collapse-1.7.2/collapse/man/fdiff.Rd | 16 - collapse-1.7.2/collapse/man/ffirst_flast.Rd | 8 collapse-1.7.2/collapse/man/fgrowth.Rd | 12 collapse-1.7.2/collapse/man/flag.Rd | 8 collapse-1.7.2/collapse/man/fmean.Rd | 18 - collapse-1.7.2/collapse/man/fmedian.Rd | 14 collapse-1.7.2/collapse/man/fmin_fmax.Rd | 10 collapse-1.7.2/collapse/man/fmode.Rd | 7 collapse-1.7.2/collapse/man/fnth.Rd | 14 collapse-1.7.2/collapse/man/fprod.Rd | 12 collapse-1.7.2/collapse/man/fscale.Rd | 10 collapse-1.7.2/collapse/man/fsum.Rd | 12 collapse-1.7.2/collapse/man/fsummarise.Rd | 29 + collapse-1.7.2/collapse/man/fvar_fsd.Rd | 12 collapse-1.7.2/collapse/man/qsu.Rd | 22 - collapse-1.7.2/collapse/src/ExportSymbols.cpp | 8 collapse-1.7.2/collapse/src/Makevars.win | 2 collapse-1.7.2/collapse/src/RcppExports.cpp | 21 - collapse-1.7.2/collapse/src/collapse.h | 6 collapse-1.7.2/collapse/src/fbstats.cpp | 160 +++++++---- collapse-1.7.2/collapse/src/fmode.cpp | 56 ++- collapse-1.7.2/collapse/src/fsum.c | 2 collapse-1.7.2/collapse/tests/testthat/test-collap.R | 19 - collapse-1.7.2/collapse/tests/testthat/test-fmutate.R | 86 +++-- collapse-1.7.2/collapse/tests/testthat/test-qsu.R | 15 + collapse-1.7.2/collapse/tests/testthat/test-sf.R | 2 62 files changed, 640 insertions(+), 811 deletions(-)
Title: Geographic Data Analysis and Modeling
Description: Reading, writing, manipulating, analyzing and modeling of spatial data. The package implements basic and high-level functions for raster data and for vector data operations such as intersections. See the manual and tutorials on <https://rspatial.org/> to get started.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Jacob van Etten [ctb],
Michael Sumner [ctb],
Joe Cheng [ctb],
Dan Baston [ctb],
Andrew Bevan [ctb],
Roger Bivand [ctb],
Lorenzo Busetto [ctb],
Mort Canty [ctb],
Ben Fasoli [ctb],
David Forrest [ctb],
Aniruddha Ghosh [ctb],
Duncan Golicher [ctb],
Josh Gray [ctb],
Jonathan A. Greenberg [ctb],
Paul Hiemstra [ctb],
Kassel Hingee [ctb],
Alex Ilich [ctb],
Institute for Mathematics Applied Geosciences [cph],
Charles Karney [ctb],
Matteo Mattiuzzi [ctb],
Steven Mosher [ctb],
Babak Naimi [ctb],
Jakub Nowosad [ctb],
Edzer Pebesma [ctb],
Oscar Perpinan Lamigueiro [ctb],
Etienne B. Racine [ctb],
Barry Rowlingson [ctb],
Ashton Shortridge [ctb],
Bill Venables [ctb],
Rafael Wueest [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between raster versions 3.5-11 dated 2021-12-23 and 3.5-15 dated 2022-01-22
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- R/gridDistance.R | 4 ++-- R/imageplot2.R | 2 +- R/stackQuick.R | 27 ++++++++++++++++++++++++++- build/partial.rdb |binary man/area.Rd | 4 ++-- man/direction.Rd | 2 +- src/spat.h | 11 +++++++++++ 9 files changed, 56 insertions(+), 20 deletions(-)
Title: Tools for Environmental Analyses, Ecotoxicology and Various R
Functions
Description: Contains miscellaneous functions useful for managing 'NetCDF' files (see <https://en.wikipedia.org/wiki/NetCDF>), get moon phase and time for sun rise and fall, tide level, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between HelpersMG versions 4.8 dated 2021-10-13 and 5.0 dated 2022-01-22
HelpersMG-4.8/HelpersMG/R/clean.knitr.R |only HelpersMG-4.8/HelpersMG/inst/shiny/server.R |only HelpersMG-4.8/HelpersMG/inst/shiny/ui.R |only HelpersMG-4.8/HelpersMG/inst/shiny/www |only HelpersMG-4.8/HelpersMG/man/clean.knitr.Rd |only HelpersMG-5.0/HelpersMG/DESCRIPTION | 10 HelpersMG-5.0/HelpersMG/MD5 | 81 +++- HelpersMG-5.0/HelpersMG/NAMESPACE | 43 +- HelpersMG-5.0/HelpersMG/NEWS | 19 + HelpersMG-5.0/HelpersMG/R/HelpersMG-package.R | 11 HelpersMG-5.0/HelpersMG/R/IC_clean_data.R | 124 ++++--- HelpersMG-5.0/HelpersMG/R/IC_correlation_simplify.R | 26 - HelpersMG-5.0/HelpersMG/R/IC_threshold_matrix.R | 276 +++++++++++------ HelpersMG-5.0/HelpersMG/R/MHalgoGen.R | 42 ++ HelpersMG-5.0/HelpersMG/R/as.parameters.R | 204 ++++++++++-- HelpersMG-5.0/HelpersMG/R/compare.R | 2 HelpersMG-5.0/HelpersMG/R/compare_AICc.R | 10 HelpersMG-5.0/HelpersMG/R/cutter.R |only HelpersMG-5.0/HelpersMG/R/dbeta_new.R | 36 +- HelpersMG-5.0/HelpersMG/R/dcutter.R |only HelpersMG-5.0/HelpersMG/R/fitdistrquantiles.R |only HelpersMG-5.0/HelpersMG/R/flexit.R | 14 HelpersMG-5.0/HelpersMG/R/ggamma.R |only HelpersMG-5.0/HelpersMG/R/iCutter.R |only HelpersMG-5.0/HelpersMG/R/logLik.cutter.R |only HelpersMG-5.0/HelpersMG/R/plot.IconoCorel.R | 106 +++--- HelpersMG-5.0/HelpersMG/R/plot.cutter.R |only HelpersMG-5.0/HelpersMG/R/print.cutter.R |only HelpersMG-5.0/HelpersMG/R/rcutter.R |only HelpersMG-5.0/HelpersMG/R/specify_decimals.R | 26 + HelpersMG-5.0/HelpersMG/R/sysdata.rda |binary HelpersMG-5.0/HelpersMG/inst/shiny/compare |only HelpersMG-5.0/HelpersMG/inst/shiny/cutter |only HelpersMG-5.0/HelpersMG/man/HelpersMG-package.Rd | 11 HelpersMG-5.0/HelpersMG/man/IC_clean_data.Rd | 41 +- HelpersMG-5.0/HelpersMG/man/IC_correlation_simplify.Rd | 20 - HelpersMG-5.0/HelpersMG/man/IC_threshold_matrix.Rd | 78 ++-- HelpersMG-5.0/HelpersMG/man/MHalgoGen.Rd | 30 + HelpersMG-5.0/HelpersMG/man/as.parameters.Rd | 42 +- HelpersMG-5.0/HelpersMG/man/cutter.Rd |only HelpersMG-5.0/HelpersMG/man/dbeta_new.Rd | 27 + HelpersMG-5.0/HelpersMG/man/dcutter.Rd |only HelpersMG-5.0/HelpersMG/man/fitdistrquantiles.Rd |only HelpersMG-5.0/HelpersMG/man/flexit.Rd | 14 HelpersMG-5.0/HelpersMG/man/ggamma.Rd |only HelpersMG-5.0/HelpersMG/man/iCutter.Rd |only HelpersMG-5.0/HelpersMG/man/logLik.cutter.Rd |only HelpersMG-5.0/HelpersMG/man/plot.IconoCorel.Rd | 27 - HelpersMG-5.0/HelpersMG/man/plot.cutter.Rd |only HelpersMG-5.0/HelpersMG/man/print.cutter.Rd |only HelpersMG-5.0/HelpersMG/man/rcutter.Rd |only HelpersMG-5.0/HelpersMG/man/specify_decimal.Rd | 7 52 files changed, 892 insertions(+), 435 deletions(-)
Title: Interpreted String Literals
Description: An implementation of interpreted string literals, inspired by
Python's Literal String Interpolation
<https://www.python.org/dev/peps/pep-0498/> and Docstrings
<https://www.python.org/dev/peps/pep-0257/> and Julia's Triple-Quoted
String Literals
<https://docs.julialang.org/en/v1.3/manual/strings/#Triple-Quoted-String-Literals-1>.
Author: Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>),
Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between glue versions 1.6.0 dated 2021-12-17 and 1.6.1 dated 2022-01-22
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 6 +++++- R/sql.R | 9 +++++---- R/zzz.R | 3 ++- README.md | 40 ++++++++++++++++++++++++++++++++-------- inst/doc/engines.Rmd | 2 +- inst/doc/engines.html | 2 +- man/glue_sql.Rd | 5 ++++- vignettes/engines.Rmd | 2 +- 10 files changed, 64 insertions(+), 31 deletions(-)
Title: Check the Clustering Tendency
Description: Calculate some statistics aiming to help analyzing the clustering tendency of given data. In the first version, Hopkins' statistic is implemented. See Hopkins and Skellam (1954) <doi:10.1093/oxfordjournals.aob.a083391>.
Author: Kevin Wright [aut, cre] (<https://orcid.org/0000-0002-0617-8673>),
Luo YiLan [aut],
Zeng RuTong [aut]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between clustertend versions 1.5 dated 2021-04-06 and 1.6 dated 2022-01-22
DESCRIPTION | 12 +++--- MD5 | 10 ++--- NAMESPACE | 7 ++- NEWS.md | 9 +++- R/hopkins.R | 113 +++++++++++++++++++++++++++++++++++++-------------------- man/hopkins.Rd | 88 ++++++++++++++++++++++---------------------- 6 files changed, 141 insertions(+), 98 deletions(-)
Title: Bootstrapping Estimates of Clustering Stability
Description: Implementation of the bootstrapping approach for the estimation of clustering stability and its application in estimating the number of clusters, as introduced by Yu et al (2016)<doi:10.1142/9789814749411_0007>. Implementation of the non-parametric bootstrap approach to assessing the stability of module detection in a graph, the extension for the selection of a parameter set that defines a graph from data in a way that optimizes stability and the corresponding visualization functions, as introduced by Tian et al (2021) <doi:10.1002/sam.11495>.
Author: Tianmou Liu [aut, cre],
Mingmei Tian [aut],
Han Yu [aut]
Maintainer: Tianmou Liu <tianmoul@buffalo.edu>
Diff between bootcluster versions 0.2.5 dated 2021-06-10 and 0.3.1 dated 2022-01-22
DESCRIPTION | 29 +++++++++++++++++------------ MD5 | 12 +++++++++--- NAMESPACE | 4 ++++ R/helpers.R | 32 ++++++++++++++++++++++++++++++++ R/kselect_ref.R |only R/scheme_ob.R |only R/scheme_subsample.R |only R/stability_ob.R |only man/k.select_ref.Rd |only man/ob.stability.Rd |only 10 files changed, 62 insertions(+), 15 deletions(-)
Title: Relational Query Generator for Data Manipulation at Scale
Description: A piped query generator based on Edgar F. Codd's relational
algebra, and on production experience using 'SQL' and 'dplyr' at big data
scale. The design represents an attempt to make 'SQL' more teachable by
denoting composition by a sequential pipeline notation instead of nested
queries or functions. The implementation delivers reliable high
performance data processing on large data systems such as 'Spark',
databases, and 'data.table'. Package features include: data processing trees
or pipelines as observable objects (able to report both columns
produced and columns used), optimized 'SQL' generation as an explicit
user visible table modeling step, plus explicit query reasoning and checking.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rquery versions 1.4.7 dated 2021-06-10 and 1.4.8 dated 2022-01-22
DESCRIPTION | 12 ++--- MD5 | 38 ++++++++--------- NEWS.md | 5 ++ R/extend.R | 6 -- R/tokenize_for_sql.R | 1 README.md | 7 +-- inst/doc/AssigmentPartitioner.html | 4 - inst/doc/Parameterized_rquery.html | 4 - inst/doc/PipeableSQL.html | 4 - inst/doc/QueryGeneration.R | 6 +- inst/doc/QueryGeneration.Rmd | 6 +- inst/doc/QueryGeneration.html | 82 +++++++++++++++++++++---------------- inst/doc/R_mapping.html | 4 - inst/doc/rquery_intro.html | 4 - inst/doc/rquery_many_columns.html | 4 - inst/doc/rquery_substitution.html | 4 - inst/doc/sql_quoting.html | 4 - man/extend_se.Rd | 6 -- man/tokenize_for_SQL.Rd | 1 vignettes/QueryGeneration.Rmd | 6 +- 20 files changed, 109 insertions(+), 99 deletions(-)
Title: D-Vine Quantile Regression
Description: Implements D-vine quantile regression models with
parametric or nonparametric pair-copulas. See
Kraus and Czado (2017) <doi:10.1016/j.csda.2016.12.009> and
Schallhorn et al. (2017) <arXiv:1705.08310>.
Author: Thomas Nagler [aut, cre],
Dani Kraus [ctb]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between vinereg versions 0.8.0 dated 2021-11-23 and 0.8.1 dated 2022-01-22
DESCRIPTION | 6 MD5 | 20 - NEWS.md | 7 inst/doc/abalone-example.R | 16 - inst/doc/abalone-example.Rmd | 17 - inst/doc/abalone-example.html | 364 ++++++++++-------------------------- inst/doc/bike-rental.R | 14 - inst/doc/bike-rental.Rmd | 14 - inst/doc/bike-rental.html | 422 +++++++++++++----------------------------- vignettes/abalone-example.Rmd | 17 - vignettes/bike-rental.Rmd | 14 - 11 files changed, 309 insertions(+), 602 deletions(-)
Title: Classes and Methods for Spatio-Temporal Data
Description: Classes and methods for spatio-temporal data, including space-time regular lattices, sparse lattices, irregular data, and trajectories; utility functions for plotting data as map sequences (lattice or animation) or multiple time series; methods for spatial and temporal selection and subsetting, as well as for spatial/temporal/spatio-temporal matching or aggregation, retrieving coordinates, print, summary, etc.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Benedikt Graeler [ctb],
Tom Gottfried [ctb],
Robert J. Hijmans [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between spacetime versions 1.2-5 dated 2021-06-14 and 1.2-6 dated 2022-01-22
DESCRIPTION | 9 +- MD5 | 30 +++---- R/aggregate.R | 2 build/vignette.rds |binary data/air.rda |binary data/fires.rda |binary inst/doc/jss816.pdf |binary inst/doc/stgvis.html | 216 +++++++++++++++++++++++++-------------------------- inst/doc/sto.pdf |binary inst/doc/stpg.pdf |binary inst/doc/stsubs.pdf |binary man/air.Rd | 4 man/fires.Rd | 2 man/mnf.Rd | 2 man/over.Rd | 2 man/tgrass.Rd | 2 16 files changed, 135 insertions(+), 134 deletions(-)
Title: 'rquery' for 'data.table'
Description: Implements the 'rquery' piped Codd-style query algebra using 'data.table'. This allows
for a high-speed in memory implementation of Codd-style data manipulation tools.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rqdatatable versions 1.3.0 dated 2021-06-12 and 1.3.1 dated 2022-01-22
DESCRIPTION | 10 ++--- MD5 | 18 ++++----- NEWS.md | 3 + README.md | 36 +++++++++---------- inst/doc/GroupedSampling.html | 4 +- inst/doc/R_mapping.html | 4 +- inst/doc/logisticexample.R | 6 ++- inst/doc/logisticexample.Rmd | 6 ++- inst/doc/logisticexample.html | 79 ++++++++++++++++++++---------------------- vignettes/logisticexample.Rmd | 6 ++- 10 files changed, 89 insertions(+), 83 deletions(-)
Title: High Dimensional Numerical and Symbolic Calculus
Description: Efficient C++ optimized functions for numerical and symbolic calculus as described in Guidotti (2020) <arXiv:2101.00086>. It includes basic arithmetic, tensor calculus, Einstein summing convention, fast computation of the Levi-Civita symbol and generalized Kronecker delta, Taylor series expansion, multivariate Hermite polynomials, high-order derivatives, ordinary differential equations, differential operators (Gradient, Jacobian, Hessian, Divergence, Curl, Laplacian) and numerical integration in arbitrary orthogonal coordinate systems: cartesian, polar, spherical, cylindrical, parabolic or user defined by custom scale factors.
Author: Emanuele Guidotti [aut, cre] (<https://orcid.org/0000-0002-8961-6623>)
Maintainer: Emanuele Guidotti <emanuele.guidotti@unine.ch>
Diff between calculus versions 0.3.2 dated 2021-12-18 and 0.3.3 dated 2022-01-22
DESCRIPTION | 6 +-- MD5 | 4 +- tests/testthat/test-integral.R | 62 ++++++++++++++++++++--------------------- 3 files changed, 36 insertions(+), 36 deletions(-)
Title: Versatile Curation of Table Metadata
Description: A YAML-based
mechanism for working with table metadata. Supports
compact syntax for creating, modifying, viewing, exporting,
importing, displaying, and plotting metadata coded as column
attributes. The 'yamlet' dialect is valid 'YAML' with
defaults and conventions chosen to improve readability.
See ?yamlet, ?decorate.data.frame and ?modify.default.
See ?read_yamlet ?write_yamlet, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 0.7.7 dated 2021-07-18 and 0.8.1 dated 2022-01-22
DESCRIPTION | 8 MD5 | 103 +++++---- NAMESPACE | 8 R/canonical.R |only R/decorate.R | 13 + R/merge.R |only R/parsimonious.R |only R/singularity.R | 2 R/yamlet.R | 115 +++++++++- inst/doc/yamlet-introduction.R | 14 + inst/doc/yamlet-introduction.Rmd | 22 +- inst/doc/yamlet-introduction.html | 217 +++++++++++--------- man/as.data.frame.yamlet.Rd | 1 man/as_yam.character.Rd | 7 man/canonical.Rd |only man/canonical.decorated.Rd |only man/canonical.yamlet.Rd |only man/classified.data.frame.Rd | 1 man/decorate.character.Rd | 1 man/decorate.data.frame.Rd | 1 man/desolve.decorated.Rd | 1 man/explicit_guide.yamlet.Rd | 2 man/ggplot.decorated.Rd | 1 man/io_csv.character.Rd | 1 man/io_csv.data.frame.Rd | 1 man/io_res.character.Rd | 1 man/io_table.character.Rd | 1 man/io_table.data.frame.Rd | 1 man/io_yamlet.character.Rd | 1 man/io_yamlet.data.frame.Rd | 1 man/is_parseable.default.Rd | 3 man/merge.decorated.Rd |only man/mimic.default.Rd | 1 man/modify.default.Rd | 1 man/names-set-.decorated.Rd | 3 man/parsimonious.Rd |only man/parsimonious.default.Rd |only man/parsimonious.list.Rd |only man/promote.list.Rd | 1 man/read_yamlet.Rd | 1 man/resolve.decorated.Rd | 1 man/selected.default.Rd | 1 man/sub-.decorated.Rd | 1 man/sub-sub-.decorated.Rd | 1 man/sub-subset-.decorated.Rd | 1 man/subset-.decorated.Rd | 1 man/to_yamlet.NULL.Rd | 1 man/to_yamlet.Rd | 3 man/to_yamlet.character.Rd | 13 + man/to_yamlet.default.Rd | 1 man/to_yamlet.list.Rd | 1 man/to_yamlet.yamlet.Rd |only man/unnest.Rd | 1 man/write_yamlet.Rd | 7 tests/testthat/052b.rds |only tests/testthat/Rplots.pdf |only tests/testthat/donttest-yamlet.R |only tests/testthat/graphics-yamlet.R |only tests/testthat/test-yamlet.R | 398 ++++++++++++++++++-------------------- vignettes/yamlet-introduction.Rmd | 22 +- 60 files changed, 598 insertions(+), 389 deletions(-)
Title: Simulation and Prediction with Seasonal ARIMA Models
Description: Functions, classes and methods for time series modelling with ARIMA
and related models. The aim of the package is to provide consistent
interface for the user. For example, a single function autocorrelations()
computes various kinds of theoretical and sample autocorrelations. This is
work in progress, see the documentation and vignettes for the current
functionality. Function sarima() fits extended multiplicative seasonal
ARIMA models with trends, exogenous variables and arbitrary roots on the
unit circle, which can be fixed or estimated.
Author: Georgi N. Boshnakov [aut, cre],
Jamie Halliday [aut]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between sarima versions 0.8.5 dated 2021-08-20 and 0.8.6 dated 2022-01-22
DESCRIPTION | 18 ++--- MD5 | 44 +++++++------- NAMESPACE | 17 +++-- NEWS.md | 16 +++++ R/autocovariances.R | 106 ++++++++++++++++++++++++++++++++-- R/fit.R | 18 ++++- R/fitTools.R | 7 +- R/periodogram.R | 26 +++++--- R/wrapKFAS.R | 11 ++- README.md | 13 ++-- build/partial.rdb |binary inst/REFERENCES.bib | 2 inst/doc/garch_tests_example.pdf |binary inst/doc/white_noise_tests.pdf |binary man/acfGarchTest.Rd | 14 +++- man/acfIidTest.Rd | 6 + man/autocorrelations.Rd | 18 +++++ man/confint.Rd |only man/plot-methods.Rd | 29 ++++++++- man/se.Rd |only man/tsdiag.Sarima.Rd | 54 ++++++++++++++--- tests/testthat/test-KalmanForecast.R | 2 tests/testthat/test-autocovariances.R | 14 +++- tests/testthat/test-sarima.R | 46 +++++++++----- 24 files changed, 360 insertions(+), 101 deletions(-)
Title: Bayesian Meta-Analysis via 'Stan'
Description: Performs Bayesian meta-analysis, meta-regression and model-based meta-analysis
using 'Stan'. Includes binomial-normal hierarchical models and option to use
weakly informative priors for the heterogeneity parameter and the treatment effect
parameter which are described in Guenhan, Roever, and Friede (2020) <doi:10.1002/jrsm.1370>.
Author: Burak Kuersad Guenhan [aut, cre]
(<https://orcid.org/0000-0002-7454-8680>),
Christian Roever [aut] (<https://orcid.org/0000-0002-6911-698X>),
Trustees of Columbia University [cph] (src/init.cpp, tools/make_cpp.R,
R/stanmodels.R)
Maintainer: Burak Kuersad Guenhan <burakgunhan@gmail.com>
Diff between MetaStan versions 0.4.0 dated 2021-07-25 and 1.0.0 dated 2022-01-22
MetaStan-0.4.0/MetaStan/R/create_MBMA_dat.R |only MetaStan-0.4.0/MetaStan/R/print.R |only MetaStan-0.4.0/MetaStan/data/dat.Berkey1995.rda |only MetaStan-0.4.0/MetaStan/data/dat.Crins2014.rda |only MetaStan-0.4.0/MetaStan/data/dat.Eletriptan.rda |only MetaStan-0.4.0/MetaStan/inst/include/meta_header.hpp |only MetaStan-0.4.0/MetaStan/man/create_MBMA_dat.Rd |only MetaStan-0.4.0/MetaStan/src/init.cpp |only MetaStan-0.4.0/MetaStan/src/stan_files |only MetaStan-0.4.0/MetaStan/tests/testthat/test_first.R |only MetaStan-0.4.0/MetaStan/tools |only MetaStan-1.0.0/MetaStan/DESCRIPTION | 34 MetaStan-1.0.0/MetaStan/MD5 | 110 +- MetaStan-1.0.0/MetaStan/NAMESPACE | 19 MetaStan-1.0.0/MetaStan/R/MBMA_stan.R | 306 +++-- MetaStan-1.0.0/MetaStan/R/MetaStan-package.R | 73 - MetaStan-1.0.0/MetaStan/R/compare_MBMA.R |only MetaStan-1.0.0/MetaStan/R/convert_data_arm.R | 53 - MetaStan-1.0.0/MetaStan/R/create_MetaStan_dat.R |only MetaStan-1.0.0/MetaStan/R/dat.Berkey1995.R | 13 MetaStan-1.0.0/MetaStan/R/dat.Boucher2016.R |only MetaStan-1.0.0/MetaStan/R/dat.Boucher2016.pairwise.R |only MetaStan-1.0.0/MetaStan/R/dat.Crins2014.R | 15 MetaStan-1.0.0/MetaStan/R/forest_plot.R |only MetaStan-1.0.0/MetaStan/R/globals.R |only MetaStan-1.0.0/MetaStan/R/meta_stan.R | 546 +++++----- MetaStan-1.0.0/MetaStan/R/plot.MBMA_stan.R |only MetaStan-1.0.0/MetaStan/R/print.MBMA_stan.R |only MetaStan-1.0.0/MetaStan/R/print.meta_stan.R |only MetaStan-1.0.0/MetaStan/R/stanmodels.R | 64 - MetaStan-1.0.0/MetaStan/R/zzz.R | 5 MetaStan-1.0.0/MetaStan/build/vignette.rds |binary MetaStan-1.0.0/MetaStan/configure |only MetaStan-1.0.0/MetaStan/configure.win |only MetaStan-1.0.0/MetaStan/data/dat.Berkey1995.RData |only MetaStan-1.0.0/MetaStan/data/dat.Boucher2016.RData |only MetaStan-1.0.0/MetaStan/data/dat.Boucher2016.pairwise.rda |only MetaStan-1.0.0/MetaStan/data/dat.Crins2014.RData |only MetaStan-1.0.0/MetaStan/data/dat.Eletriptan.RData |only MetaStan-1.0.0/MetaStan/inst/doc/MetaStan_BNHM.R | 145 +- MetaStan-1.0.0/MetaStan/inst/doc/MetaStan_BNHM.Rmd | 59 - MetaStan-1.0.0/MetaStan/inst/doc/MetaStan_BNHM.html | 724 +++++--------- MetaStan-1.0.0/MetaStan/inst/figures |only MetaStan-1.0.0/MetaStan/inst/include/stan_meta_header.hpp |only MetaStan-1.0.0/MetaStan/inst/stan |only MetaStan-1.0.0/MetaStan/man/MBMA_stan.Rd | 96 + MetaStan-1.0.0/MetaStan/man/MetaStan-package.Rd | 7 MetaStan-1.0.0/MetaStan/man/compare_MBMA.Rd |only MetaStan-1.0.0/MetaStan/man/convert_data_arm.Rd | 22 MetaStan-1.0.0/MetaStan/man/create_MetaStan_dat.Rd |only MetaStan-1.0.0/MetaStan/man/dat.Berkey1995.Rd | 11 MetaStan-1.0.0/MetaStan/man/dat.Boucher2016.Rd |only MetaStan-1.0.0/MetaStan/man/dat.Boucher2016.pairwise.Rd |only MetaStan-1.0.0/MetaStan/man/dat.Crins2014.Rd | 14 MetaStan-1.0.0/MetaStan/man/forest_plot.Rd |only MetaStan-1.0.0/MetaStan/man/meta_stan.Rd | 145 +- MetaStan-1.0.0/MetaStan/man/plot.MBMA_stan.Rd |only MetaStan-1.0.0/MetaStan/man/print.MBMA_stan.Rd |only MetaStan-1.0.0/MetaStan/man/print.meta_stan.Rd | 5 MetaStan-1.0.0/MetaStan/src/Makevars | 22 MetaStan-1.0.0/MetaStan/src/Makevars.win | 22 MetaStan-1.0.0/MetaStan/src/RcppExports.cpp |only MetaStan-1.0.0/MetaStan/src/stanExports_MBMA.cc |only MetaStan-1.0.0/MetaStan/src/stanExports_MBMA.h |only MetaStan-1.0.0/MetaStan/src/stanExports_SMA.cc |only MetaStan-1.0.0/MetaStan/src/stanExports_SMA.h |only MetaStan-1.0.0/MetaStan/src/stanExports_SMA_Higgins.cc |only MetaStan-1.0.0/MetaStan/src/stanExports_SMA_Higgins.h |only MetaStan-1.0.0/MetaStan/tests/testthat/Rplots.pdf |only MetaStan-1.0.0/MetaStan/tests/testthat/_snaps |only MetaStan-1.0.0/MetaStan/tests/testthat/test_MBMA.R | 74 - MetaStan-1.0.0/MetaStan/tests/testthat/test_SMA.R |only MetaStan-1.0.0/MetaStan/tests/testthat/test_SMA_Higgins.R |only MetaStan-1.0.0/MetaStan/tests/testthat/test_forestplot.R |only MetaStan-1.0.0/MetaStan/vignettes/MetaStan_BNHM.Rmd | 59 - 75 files changed, 1294 insertions(+), 1349 deletions(-)
Title: Empirical Dynamic Modeling ('EDM')
Description: An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Author: Joseph Park [aut, cre] (<https://orcid.org/0000-0001-5411-1409>),
Cameron Smith [aut] (<https://orcid.org/0000-0003-0020-5607>),
George Sugihara [aut, ccp] (<https://orcid.org/0000-0002-2863-6946>),
Ethan Deyle [aut] (<https://orcid.org/0000-0001-8704-8434>),
Erik Saberski [ctb] (<https://orcid.org/0000-0002-6475-6187>),
Hao Ye [ctb] (<https://orcid.org/0000-0002-8630-1458>),
The Regents of the University of California [cph]
Maintainer: Joseph Park <JosephPark@IEEE.org>
Diff between rEDM versions 1.10.0 dated 2021-12-18 and 1.10.1 dated 2022-01-22
DESCRIPTION | 8 ++++---- MD5 | 21 +++++++++++---------- NEWS | 4 ++-- src/CCM.cpp | 7 +------ src/Multiview.cpp | 7 +------ src/ParameterList.cpp |only src/RcppEDMCommon.h | 2 ++ src/SMap.cpp | 7 +------ src/Simplex.cpp | 7 +------ src/cppEDM/src/CCM.cc | 11 +++++++++++ src/cppEDM/src/Parameter.cc | 2 +- vignettes/rEDM-tutorial.html | 20 ++++++++++---------- 12 files changed, 45 insertions(+), 51 deletions(-)
Title: Probabilistic Supervised Learning for 'mlr3'
Description: Provides extensions for probabilistic supervised learning for
'mlr3'. This includes extending the regression task to probabilistic
and interval regression, adding a survival task, and other specialized
models, predictions, and measures.
Author: Raphael Sonabend [aut, cre] (<https://orcid.org/0000-0001-9225-4654>),
Franz Kiraly [aut],
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Nurul Ain Toha [ctb],
Andreas Bender [ctb] (<https://orcid.org/0000-0001-5628-8611>)
Maintainer: Raphael Sonabend <raphaelsonabend@gmail.com>
Diff between mlr3proba versions 0.4.2 dated 2021-10-22 and 0.4.3 dated 2022-01-22
mlr3proba-0.4.2/mlr3proba/R/MeasureSurvIntegrated.R |only mlr3proba-0.4.2/mlr3proba/man/MeasureSurvIntegrated.Rd |only mlr3proba-0.4.2/mlr3proba/tests/testthat/test_mlr_measures_MeasureSurvIntegrated.R |only mlr3proba-0.4.2/mlr3proba/tests/testthat/test_mlr_measures_MeasureSurvLogloss.R |only mlr3proba-0.4.3/mlr3proba/DESCRIPTION | 39 +- mlr3proba-0.4.3/mlr3proba/MD5 | 170 +++++----- mlr3proba-0.4.3/mlr3proba/NAMESPACE | 10 mlr3proba-0.4.3/mlr3proba/NEWS.md | 10 mlr3proba-0.4.3/mlr3proba/R/LearnerDens.R | 2 mlr3proba-0.4.3/mlr3proba/R/LearnerDensHistogram.R | 2 mlr3proba-0.4.3/mlr3proba/R/LearnerSurv.R | 3 mlr3proba-0.4.3/mlr3proba/R/MeasureDens.R | 2 mlr3proba-0.4.3/mlr3proba/R/MeasureDensLogloss.R | 31 - mlr3proba-0.4.3/mlr3proba/R/MeasureSurv.R | 2 mlr3proba-0.4.3/mlr3proba/R/MeasureSurvAUC.R | 23 - mlr3proba-0.4.3/mlr3proba/R/MeasureSurvCalibrationAlpha.R | 27 - mlr3proba-0.4.3/mlr3proba/R/MeasureSurvCalibrationBeta.R | 27 - mlr3proba-0.4.3/mlr3proba/R/MeasureSurvChamblessAUC.R | 23 + mlr3proba-0.4.3/mlr3proba/R/MeasureSurvCindex.R | 80 +--- mlr3proba-0.4.3/mlr3proba/R/MeasureSurvDCalibration.R | 53 --- mlr3proba-0.4.3/mlr3proba/R/MeasureSurvGraf.R | 74 ++-- mlr3proba-0.4.3/mlr3proba/R/MeasureSurvHungAUC.R | 23 + mlr3proba-0.4.3/mlr3proba/R/MeasureSurvIntLogloss.R | 70 ++-- mlr3proba-0.4.3/mlr3proba/R/MeasureSurvLogloss.R | 84 +--- mlr3proba-0.4.3/mlr3proba/R/MeasureSurvMAE.R | 27 - mlr3proba-0.4.3/mlr3proba/R/MeasureSurvMSE.R | 31 - mlr3proba-0.4.3/mlr3proba/R/MeasureSurvRMSE.R | 31 - mlr3proba-0.4.3/mlr3proba/R/MeasureSurvSchmid.R | 69 ++-- mlr3proba-0.4.3/mlr3proba/R/MeasureSurvSongAUC.R | 40 +- mlr3proba-0.4.3/mlr3proba/R/MeasureSurvSongTNR.R | 35 -- mlr3proba-0.4.3/mlr3proba/R/MeasureSurvSongTPR.R | 53 --- mlr3proba-0.4.3/mlr3proba/R/MeasureSurvUnoAUC.R | 19 + mlr3proba-0.4.3/mlr3proba/R/MeasureSurvUnoTNR.R | 33 - mlr3proba-0.4.3/mlr3proba/R/MeasureSurvUnoTPR.R | 35 -- mlr3proba-0.4.3/mlr3proba/R/PipeOpCrankCompositor.R | 2 mlr3proba-0.4.3/mlr3proba/R/PipeOpDistrCompositor.R | 23 - mlr3proba-0.4.3/mlr3proba/R/PipeOpPredTransformer.R | 2 mlr3proba-0.4.3/mlr3proba/R/PipeOpProbregrCompositor.R | 2 mlr3proba-0.4.3/mlr3proba/R/PipeOpSurvAvg.R | 1 mlr3proba-0.4.3/mlr3proba/R/PipeOpTransformer.R | 4 mlr3proba-0.4.3/mlr3proba/R/PredictionDataSurv.R | 26 + mlr3proba-0.4.3/mlr3proba/R/PredictionSurv.R | 2 mlr3proba-0.4.3/mlr3proba/R/as_prediction_dens.R |only mlr3proba-0.4.3/mlr3proba/R/as_task_dens.R |only mlr3proba-0.4.3/mlr3proba/R/integrated_scores.R | 35 +- mlr3proba-0.4.3/mlr3proba/R/partition.R |only mlr3proba-0.4.3/mlr3proba/R/pipelines.R | 3 mlr3proba-0.4.3/mlr3proba/build/partial.rdb |binary mlr3proba-0.4.3/mlr3proba/man/MeasureSurvAUC.Rd | 17 - mlr3proba-0.4.3/mlr3proba/man/PredictionDens.Rd | 1 mlr3proba-0.4.3/mlr3proba/man/PredictionSurv.Rd | 1 mlr3proba-0.4.3/mlr3proba/man/TaskDens.Rd | 1 mlr3proba-0.4.3/mlr3proba/man/TaskSurv.Rd | 1 mlr3proba-0.4.3/mlr3proba/man/as_prediction_dens.Rd |only mlr3proba-0.4.3/mlr3proba/man/as_prediction_surv.Rd | 4 mlr3proba-0.4.3/mlr3proba/man/as_task_dens.Rd |only mlr3proba-0.4.3/mlr3proba/man/mlr_learners_dens.hist.Rd | 2 mlr3proba-0.4.3/mlr3proba/man/mlr_learners_dens.kde.Rd | 2 mlr3proba-0.4.3/mlr3proba/man/mlr_learners_surv.coxph.Rd | 2 mlr3proba-0.4.3/mlr3proba/man/mlr_learners_surv.kaplan.Rd | 2 mlr3proba-0.4.3/mlr3proba/man/mlr_learners_surv.rpart.Rd | 2 mlr3proba-0.4.3/mlr3proba/man/mlr_measures_dens.logloss.Rd | 18 - mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.calib_alpha.Rd | 18 - mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.calib_beta.Rd | 18 - mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.chambless_auc.Rd | 16 mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.cindex.Rd | 20 - mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.dcalib.Rd | 16 mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.graf.Rd | 51 --- mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.hung_auc.Rd | 16 mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.intlogloss.Rd | 51 --- mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.logloss.Rd | 44 -- mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.mae.Rd | 18 - mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.mse.Rd | 18 - mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.rmse.Rd | 18 - mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.schmid.Rd | 51 --- mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.song_auc.Rd | 31 - mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.song_tnr.Rd | 24 - mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.song_tpr.Rd | 34 -- mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.uno_auc.Rd | 2 mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.uno_tnr.Rd | 24 - mlr3proba-0.4.3/mlr3proba/man/mlr_measures_surv.uno_tpr.Rd | 24 - mlr3proba-0.4.3/mlr3proba/man/pecs.Rd | 2 mlr3proba-0.4.3/mlr3proba/src/RcppExports.cpp | 4 mlr3proba-0.4.3/mlr3proba/src/survival_scores.cpp | 20 - mlr3proba-0.4.3/mlr3proba/tests/testthat.R | 11 mlr3proba-0.4.3/mlr3proba/tests/testthat/test_PredictionDens.R | 5 mlr3proba-0.4.3/mlr3proba/tests/testthat/test_PredictionSurv.R | 16 mlr3proba-0.4.3/mlr3proba/tests/testthat/test_TaskDens.R | 18 + mlr3proba-0.4.3/mlr3proba/tests/testthat/test_TaskSurv.R | 21 + mlr3proba-0.4.3/mlr3proba/tests/testthat/test_mlr_measures.R | 81 +++- mlr3proba-0.4.3/mlr3proba/tests/testthat/test_partition.R |only 91 files changed, 745 insertions(+), 1208 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-27 0.5.1
2020-06-26 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-17 0.1.5
2021-07-28 0.1.4
Title: WHOIS Server Querying
Description: Queries data from WHOIS servers.
Author: Brad Cable
Maintainer: Brad Cable <brad@bcable.net>
Diff between Rwhois versions 1.0.8 dated 2022-01-03 and 1.0.9 dated 2022-01-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/functions.R | 39 +++++++++++++++++++++++++++++---------- README.md | 2 +- man/Rwhois.Rd | 5 ++++- 5 files changed, 42 insertions(+), 20 deletions(-)
Title: General Equilibrium Modeling
Description: Some tools for developing general equilibrium models and some general equilibrium models. These models can be used for teaching economic theory and are built by the methods of new structural economics (see <https://www.nse.pku.edu.cn/> and LI Wu, 2019, ISBN: 9787521804225, General Equilibrium and Structural Dynamics: Perspectives of New Structural Economics. Beijing: Economic Science Press). The model form and mathematical methods can be traced back to von Neumann, J. (1945, A Model of General Economic Equilibrium. The Review of Economic Studies, 13. pp. 1-9) and Kemeny, J. G., O. Morgenstern and G. L. Thompson (1956, A Generalization of the von Neumann Model of an Expanding Economy, Econometrica, 24, pp. 115-135) et al. By the way, J. G. Kemeny is a co-inventor of the computer language BASIC.
Author: LI Wu <liwu@staff.shu.edu.cn>
Maintainer: LI Wu <liwu@staff.shu.edu.cn>
Diff between GE versions 0.2.4 dated 2022-01-09 and 0.2.5 dated 2022-01-22
GE-0.2.4/GE/R/gemOLGFinancialInstrument.R |only GE-0.2.4/GE/man/gemOLGFinancialInstrument.Rd |only GE-0.2.5/GE/DESCRIPTION | 6 GE-0.2.5/GE/MD5 | 78 ++++-- GE-0.2.5/GE/NAMESPACE | 11 GE-0.2.5/GE/R/gemCanonicalDynamicMacroeconomic_3_2.R | 4 GE-0.2.5/GE/R/gemOLGFOneFirm.R |only GE-0.2.5/GE/R/gemOLGFPureExchange.R |only GE-0.2.5/GE/R/gemOLGFTwoFirms.R |only GE-0.2.5/GE/R/gemOLGLand_4_3.R |only GE-0.2.5/GE/R/gemOLGPrivateFirm.R |only GE-0.2.5/GE/R/gemOLGPureExchange_2_2.R | 138 ----------- GE-0.2.5/GE/R/gemOLGPureExchange_Bank.R |only GE-0.2.5/GE/R/gemOLGTimeCircle.R | 187 ++++++++++----- GE-0.2.5/GE/R/gemPriceRegulation.R |only GE-0.2.5/GE/R/gemSecurityPricingExample.R | 2 GE-0.2.5/GE/R/gemTemporaryEquilibriumPath.R |only GE-0.2.5/GE/R/gemTwoCountryPureExchange.R | 16 - GE-0.2.5/GE/R/gemTwoCountryPureExchange_Bond.R | 4 GE-0.2.5/GE/R/gemTwoCountry_Bond_7_4.R | 50 ++-- GE-0.2.5/GE/R/gemTwoCountry_Tariff_9_5.R | 2 GE-0.2.5/GE/R/gemstEndogenousProductionFunction.R |only GE-0.2.5/GE/R/gemstEndogenousUtilityFunction.R |only GE-0.2.5/GE/R/node_new.R | 10 GE-0.2.5/GE/R/node_set.R | 15 + GE-0.2.5/GE/R/policyMarketClearingPrice.R | 5 GE-0.2.5/GE/R/sdm2.R | 6 GE-0.2.5/GE/R/structural_function.R | 2 GE-0.2.5/GE/man/gemCanonicalDynamicMacroeconomic_3_2.Rd | 4 GE-0.2.5/GE/man/gemOLGFOneFirm.Rd |only GE-0.2.5/GE/man/gemOLGFPureExchange.Rd |only GE-0.2.5/GE/man/gemOLGFTwoFirms.Rd |only GE-0.2.5/GE/man/gemOLGLand_4_3.Rd |only GE-0.2.5/GE/man/gemOLGPrivateFirm.Rd |only GE-0.2.5/GE/man/gemOLGPureExchange_2_2.Rd | 140 +---------- GE-0.2.5/GE/man/gemOLGPureExchange_Bank.Rd |only GE-0.2.5/GE/man/gemOLGTimeCircle.Rd | 190 ++++++++++------ GE-0.2.5/GE/man/gemPriceRegulation.Rd |only GE-0.2.5/GE/man/gemSecurityPricingExample.Rd | 2 GE-0.2.5/GE/man/gemTemporaryEquilibriumPath.Rd |only GE-0.2.5/GE/man/gemTwoCountryPureExchange.Rd | 16 - GE-0.2.5/GE/man/gemTwoCountryPureExchange_Bond.Rd | 4 GE-0.2.5/GE/man/gemTwoCountry_Bond_7_4.Rd | 50 ++-- GE-0.2.5/GE/man/gemTwoCountry_Tariff_9_5.Rd | 2 GE-0.2.5/GE/man/gemstEndogenousProductionFunction.Rd |only GE-0.2.5/GE/man/gemstEndogenousUtilityFunction.Rd |only GE-0.2.5/GE/man/node_new.Rd | 10 GE-0.2.5/GE/man/node_set.Rd | 10 GE-0.2.5/GE/man/policyMarketClearingPrice.Rd | 6 GE-0.2.5/GE/man/sdm2.Rd | 4 GE-0.2.5/GE/man/structural_function.Rd | 2 51 files changed, 457 insertions(+), 519 deletions(-)