Title: Sampling Design for Spatially Explicit Capture-Recapture
Description: Tools for designing spatially explicit capture-recapture studies of animal populations. This is primarily a simulation manager for package 'secr'. Extensions in version 2.5.0 include costing and evaluation of detector spacing.
Author: Murray Efford
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secrdesign versions 2.5.11 dated 2020-04-10 and 2.6.0 dated 2022-01-25
DESCRIPTION | 14 ++-- MD5 | 28 ++++---- NAMESPACE | 1 NEWS | 16 ++++ R/methods.R | 2 R/optimalSpacing.R | 69 ++++++--------------- R/run.scenarios.R | 149 ++++++++++++++++++++-------------------------- R/scenarioSummary.R | 6 + R/select.stats.R | 30 ++++----- man/make.scenarios.Rd | 4 - man/optimalSpacing.Rd | 6 - man/run.scenarios.Rd | 36 +++++------ man/scenarioSummary.Rd | 4 - man/secrdesign-package.Rd | 4 - src/secrdesign.c | 6 + 15 files changed, 181 insertions(+), 194 deletions(-)
Title: R-Friendly Threading in C++
Description: Provides a C++11-style thread class and thread pool that can safely
be interrupted from R. See Nagler (2021) <doi:10.18637/jss.v097.c01>.
Author: Thomas Nagler [aut, cre] (<https://orcid.org/0000-0003-1855-0046>)
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between RcppThread versions 1.0.0 dated 2021-02-01 and 2.0.0 dated 2022-01-25
RcppThread-1.0.0/RcppThread/inst/include/RcppThread/Batch.hpp |only RcppThread-2.0.0/RcppThread/DESCRIPTION | 19 RcppThread-2.0.0/RcppThread/MD5 | 36 RcppThread-2.0.0/RcppThread/NAMESPACE | 2 RcppThread-2.0.0/RcppThread/NEWS.md | 19 RcppThread-2.0.0/RcppThread/R/RcppThread-package.R | 1 RcppThread-2.0.0/RcppThread/R/detectCores.R |only RcppThread-2.0.0/RcppThread/README.md | 35 RcppThread-2.0.0/RcppThread/build/partial.rdb |binary RcppThread-2.0.0/RcppThread/build/vignette.rds |binary RcppThread-2.0.0/RcppThread/inst/include/RcppThread.h | 4 RcppThread-2.0.0/RcppThread/inst/include/RcppThread/Progress.hpp |only RcppThread-2.0.0/RcppThread/inst/include/RcppThread/RMonitor.hpp | 6 RcppThread-2.0.0/RcppThread/inst/include/RcppThread/Rcout.hpp | 2 RcppThread-2.0.0/RcppThread/inst/include/RcppThread/Thread.hpp | 2 RcppThread-2.0.0/RcppThread/inst/include/RcppThread/ThreadPool.hpp | 375 +++------ RcppThread-2.0.0/RcppThread/inst/include/RcppThread/parallelFor.hpp | 114 ++ RcppThread-2.0.0/RcppThread/inst/include/RcppThread/quickpool.hpp |only RcppThread-2.0.0/RcppThread/man/detectCores.Rd |only RcppThread-2.0.0/RcppThread/src |only RcppThread-2.0.0/RcppThread/tests/tests.cpp | 404 ++++++---- RcppThread-2.0.0/RcppThread/tests/testthat/tests.R | 165 ++-- 22 files changed, 644 insertions(+), 540 deletions(-)
Title: Markov Random Field Models for Image Analysis
Description: Model fitting, sampling and visualization
for the (Hidden) Markov Random Field model with pairwise interactions and
general interaction structure from
Freguglia, Garcia & Bicas (2020) <doi:10.1002/env.2613>,
which has many popular models used in 2-dimensional lattices
as particular cases, like the Ising Model and Potts Model.
A complete manuscript describing the package is available in
Freguglia & Garcia (2022) <doi:10.18637/jss.v101.i08>.
Author: Victor Freguglia [aut, cre] (<https://orcid.org/0000-0002-6189-4453>)
Maintainer: Victor Freguglia <victorfreguglia@gmail.com>
Diff between mrf2d versions 0.5 dated 2020-10-29 and 1.0 dated 2022-01-25
DESCRIPTION | 13 - MD5 | 88 +++++------ NAMESPACE | 1 NEWS.md | 12 + R/RcppExports.R | 8 + R/array_vector_conversions.R | 28 +++ R/basis_functions.R | 2 R/cpmrf2d.R | 2 R/example_data.R | 2 R/family.R | 4 R/fit_ghm.R | 2 R/fit_sa.R | 7 R/mrf2d.R | 4 R/mrfi_class.R | 2 R/mrfi_methods.R | 2 R/mrfout.R | 12 + R/pseudo_likelihood.R | 18 +- R/rmrf.R | 8 - R/suf_stat.R | 67 ++++++++ README.md | 27 +-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 25 ++- inst/doc/mrf2d-family.html | 130 +++++----------- inst/doc/three-dimensions-on-mrf2d.html | 246 +++++++++++++------------------- man/basis_functions.Rd | 2 man/bold5000.Rd | 2 man/cpmrf2d.Rd | 2 man/fit_ghm.Rd | 2 man/fit_pl.Rd | 2 man/fit_sa.Rd | 2 man/mrf2d-family.Rd | 2 man/mrf2d-package.Rd | 5 man/mrfi-class.Rd | 2 man/pl_mrf2d.Rd | 2 man/rmrf2d.Rd | 2 man/rmrf2d_mc.Rd | 13 + man/smr_array.Rd | 6 man/smr_stat.Rd | 11 + src/RcppExports.cpp | 33 ++++ src/conditional_probability.cpp | 63 ++++++++ tests/testthat/test-mrfi_class.R | 2 tests/testthat/test-mrfout.R | 5 tests/testthat/test-smr_functions.R | 3 tests/testthat/test-suf_stat.R | 18 ++ 45 files changed, 550 insertions(+), 339 deletions(-)
Title: Linguistic Matching and Accommodation
Description: Measure similarity between texts. Offers a variety of processing
tools and similarity metrics to facilitate flexible representation of texts and matching.
Implements forms of Language Style Matching (Ireland & Pennebaker, 2010) <doi:10.1037/a0020386>
and Latent Semantic Analysis (Landauer & Dumais, 1997) <doi:10.1037/0033-295X.104.2.211>.
Author: Micah Iserman
Maintainer: Micah Iserman <micah.iserman@gmail.com>
Diff between lingmatch versions 1.0.2 dated 2021-04-22 and 1.0.3 dated 2022-01-25
DESCRIPTION | 8 MD5 | 48 ++-- NEWS.md | 12 - R/lingmatch.R | 393 ++++++++++++++++++++------------------- R/sysdata.rda |binary R/utils.R | 111 +++++++---- README.md | 12 - man/download.dict.Rd | 1 man/download.lspace.Rd | 1 man/lingmatch.Rd | 8 man/lma_dtm.Rd | 4 man/lma_initdirs.Rd | 1 man/lma_lspace.Rd | 27 +- man/lma_meta.Rd | 12 + man/lma_patcat.Rd | 5 man/lma_simets.Rd | 2 man/lma_weight.Rd | 4 man/read.dic.Rd | 15 + man/read.segments.Rd | 5 man/select.dict.Rd | 4 man/select.lspace.Rd | 5 src/RcppExports.cpp | 5 tests/testthat/test-lma_dtm.R | 9 tests/testthat/test-lma_simets.R | 6 tests/testthat/test-utils.R | 1 25 files changed, 403 insertions(+), 296 deletions(-)
Title: Simulated Goodness-of-Fit Tests for Discrete Distributions
Description: Implements fast Monte Carlo simulations for
goodness-of-fit (GOF) tests for discrete distributions. This
includes tests based on the Chi-squared statistic, the
log-likelihood-ratio (G^2) statistic, the Freeman-Tukey
(Hellinger-distance) statistic, the Kolmogorov-Smirnov
statistic, the Cramer-von Mises statistic as described in
Choulakian, Lockhart and Stephens (1994) <doi:10.2307/3315828>,
and the root-mean-square statistic, see Perkins,
Tygert, and Ward (2011) <doi:10.1016/j.amc.2011.03.124>.
Author: Josh McCormick [aut, cre]
Maintainer: Josh McCormick <josh.mccormick@aya.yale.edu>
Diff between discretefit versions 0.1.1 dated 2021-10-30 and 0.1.2 dated 2022-01-25
DESCRIPTION | 10 ++- MD5 | 19 +++---- NEWS.md | 4 + README.md | 97 ++++++++++++++++++------------------- inst/doc/package_introduction.Rmd | 45 ++++++++++++++--- inst/doc/package_introduction.html | 50 ++++++++++++------- man/figures |only src/discretefit.h | 6 +- src/simulate_p.cpp | 5 + src/utils.cpp | 31 +++-------- vignettes/package_introduction.Rmd | 45 ++++++++++++++--- 11 files changed, 196 insertions(+), 116 deletions(-)
Title: Specify (Pre)Registrations and Export Them Human- And
Machine-Readably
Description: Preregistrations, or more generally, registrations, enable
explicit timestamped and (often but not necessarily publicly) frozen
documentation of plans and expectations as well as decisions and
justifications. In research, preregistrations are commonly used to
clearly document plans and facilitate justifications of deviations from
those plans, as well as decreasing the effects of publication bias by
enabling identification of research that was conducted but not published.
Like reporting guidelines, (pre)registration forms often have specific
structures that facilitate systematic reporting of important items. The
'preregr' package facilitates specifying (pre)registrations in R and
exporting them to a human-readable format (using R Markdown partials or
exporting to an 'HTML' file) as well as human-readable embedded data
(using 'JSON'), as well as importing such exported (pre)registration
specifications from such embedded 'JSON'.
Author: Gjalt-Jorn Peters [aut, cre] (<https://orcid.org/0000-0002-0336-9589>)
Maintainer: Gjalt-Jorn Peters <gjalt-jorn@behaviorchange.eu>
Diff between preregr versions 0.2.0 dated 2022-01-12 and 0.2.1 dated 2022-01-25
DESCRIPTION | 10 +- MD5 | 67 +++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/creating_form_from_spreadsheet.Rmd | 2 inst/doc/creating_form_from_spreadsheet.html | 2 inst/doc/creating_prereg_form.html | 38 +++---- inst/doc/form_OSFprereg_v1.Rmd | 4 inst/doc/form_OSFprereg_v1.html | 22 ++-- inst/doc/form_generalPurpose_v1.html | 14 +- inst/doc/form_generalPurpose_v1_1.html | 14 +- inst/doc/form_inclSysRev_v0_92.Rmd | 4 inst/doc/form_inclSysRev_v0_92.html | 28 ++--- inst/doc/form_prereg2D_v1.Rmd | 4 inst/doc/form_prereg2D_v1.html | 26 ++--- inst/doc/form_preregQE_v0_93.html | 26 ++--- inst/doc/form_preregQE_v0_94.html | 30 +++--- inst/doc/form_prpQuant_v1.Rmd | 4 inst/doc/form_prpQuant_v1.html | 22 ++-- inst/doc/importing_form_from_url.html | 16 +-- inst/doc/importing_pregistration_from_url.html | 6 - inst/doc/preregr_intro.Rmd |only inst/doc/preregr_intro.html |only inst/doc/rmd_template_from_form.Rmd | 2 inst/doc/rmd_template_from_form.html | 8 - inst/doc/specifying_prereg_content.html | 6 - man/form_almostEmptyForm.Rd | 38 +++---- man/form_create.Rd | 124 ++++++++++++------------- man/form_fromSpreadsheet.Rd | 94 +++++++++--------- vignettes/creating_form_from_spreadsheet.Rmd | 2 vignettes/form_OSFprereg_v1.Rmd | 4 vignettes/form_inclSysRev_v0_92.Rmd | 4 vignettes/form_prereg2D_v1.Rmd | 4 vignettes/form_prpQuant_v1.Rmd | 4 vignettes/preregr_intro.Rmd |only vignettes/rmd_template_from_form.Rmd | 2 36 files changed, 317 insertions(+), 314 deletions(-)
Title: Download Crypto Currency Data from 'CoinMarketCap' without 'API'
Description: Retrieves crypto currency information and historical prices as well as information on the exchanges they are listed on. Historical data contains daily open, high, low and close values for all crypto currencies. All data is scraped from <https://coinmarketcap.com> via their 'web-api'.
Author: Sebastian Stoeckl [aut, cre] (<https://orcid.org/0000-0002-4196-6093>,
Package commissioner and maintainer.),
Jesse Vent [ctb] (Creator of the crypto package that provided the idea
and basis for this package.)
Maintainer: Sebastian Stoeckl <sebastian.stoeckl@uni.li>
Diff between crypto2 versions 1.4.2 dated 2022-01-11 and 1.4.3 dated 2022-01-25
DESCRIPTION | 8 ++--- MD5 | 12 ++++---- NEWS.md | 6 +++- R/crypto_history.R | 32 +++++++++++++++++++---- R/globals.R | 2 - README.md | 67 +++++++++++++++++++++++++++++++++++--------------- man/crypto_history.Rd | 5 ++- 7 files changed, 94 insertions(+), 38 deletions(-)
Title: Distance-Based Measures of Spatial Structures
Description: Simple computation of spatial statistic functions of distance to characterize the spatial structures of mapped objects, following Marcon, Traissac, Puech, and Lang (2015) <doi:10.18637/jss.v067.c03>.
Includes classical functions (Ripley's K and others) and more recent ones used by spatial economists (Duranton and Overman's Kd, Marcon and Puech's M).
Relies on 'spatstat' for some core calculation.
Author: Eric Marcon [aut, cre] (<https://orcid.org/0000-0002-5249-321X>),
Gabriel Lang [aut] (<https://orcid.org/0000-0002-4325-6044>),
Stephane Traissac [aut] (<https://orcid.org/0000-0001-9255-1616>),
Florence Puech [aut] (<https://orcid.org/0000-0002-5279-6878>)
Maintainer: Eric Marcon <eric.marcon@agroparistech.fr>
Diff between dbmss versions 2.7-7 dated 2021-08-22 and 2.7-8 dated 2022-01-25
DESCRIPTION | 11 +++++------ MD5 | 10 +++++----- NAMESPACE | 3 ++- NEWS.md | 10 +++++++++- README.md | 3 ++- build/vignette.rds |binary 6 files changed, 23 insertions(+), 14 deletions(-)
Title: Robust Quality Control Chart
Description: Constructs various robust quality control charts based on the median or Hodges-Lehmann estimator (location) and the median absolute deviation (MAD) or Shamos estimator (scale). The estimators used for the robust control charts are all unbiased with a sample of finite size. For more details, see Park, Kim and Wang (2022) <doi:10.1080/03610918.2019.1699114>. In addition, using this R package, the conventional quality control charts such as X-bar, S, R, p, np, u, c, g and h charts are also easily constructed. This work was partially supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (NRF-2017R1A2B4004169).
Author: Chanseok Park [aut, cre] (<https://orcid.org/0000-0002-2208-3498>),
Min Wang [ctb] (<https://orcid.org/0000-0002-9233-7844>)
Maintainer: Chanseok Park <statpnu@gmail.com>
Diff between rQCC versions 1.20.7 dated 2020-07-05 and 2.22.1 dated 2022-01-25
rQCC-1.20.7/rQCC/R/rQCC-Rprogram.R |only rQCC-1.20.7/rQCC/man/plot.rcc.Rd |only rQCC-2.22.1/rQCC/DESCRIPTION | 12 rQCC-2.22.1/rQCC/MD5 | 61 - rQCC-2.22.1/rQCC/NAMESPACE | 12 rQCC-2.22.1/rQCC/R/acc.R |only rQCC-2.22.1/rQCC/R/estimators.R |only rQCC-2.22.1/rQCC/R/factors.R |only rQCC-2.22.1/rQCC/R/rcc.R | 655 +++++++++----- rQCC-2.22.1/rQCC/build/partial.rdb |only rQCC-2.22.1/rQCC/build/vignette.rds |binary rQCC-2.22.1/rQCC/inst/CITATION | 29 rQCC-2.22.1/rQCC/inst/NEWS.Rd | 28 rQCC-2.22.1/rQCC/inst/doc/acc.Rnw |only rQCC-2.22.1/rQCC/inst/doc/acc.pdf |only rQCC-2.22.1/rQCC/inst/doc/factors.cc.Rnw | 1140 ++++++++++++------------- rQCC-2.22.1/rQCC/inst/doc/factors.cc.pdf |binary rQCC-2.22.1/rQCC/inst/doc/rcc.Rnw | 220 ++-- rQCC-2.22.1/rQCC/inst/doc/rcc.pdf |binary rQCC-2.22.1/rQCC/man/HL.Rd | 19 rQCC-2.22.1/rQCC/man/MAD.Rd | 24 rQCC-2.22.1/rQCC/man/RE.Rd | 111 +- rQCC-2.22.1/rQCC/man/Shamos.Rd | 25 rQCC-2.22.1/rQCC/man/acc.Rd |only rQCC-2.22.1/rQCC/man/evar.Rd | 51 - rQCC-2.22.1/rQCC/man/factors.cc.Rd | 23 rQCC-2.22.1/rQCC/man/finite.breakdown.Rd | 37 rQCC-2.22.1/rQCC/man/n.times.eBias.Rd | 29 rQCC-2.22.1/rQCC/man/n.times.eVar.Rd | 34 rQCC-2.22.1/rQCC/man/plot.Rd |only rQCC-2.22.1/rQCC/man/pooledEstimator.Rd |only rQCC-2.22.1/rQCC/man/rcc.Rd | 229 +++-- rQCC-2.22.1/rQCC/man/sd.unbiased.Rd |only rQCC-2.22.1/rQCC/man/unbiasing.factor.Rd | 34 rQCC-2.22.1/rQCC/vignettes/acc.Rnw |only rQCC-2.22.1/rQCC/vignettes/d3-calculations.pdf |only rQCC-2.22.1/rQCC/vignettes/factors.cc.Rnw | 1140 ++++++++++++------------- rQCC-2.22.1/rQCC/vignettes/rQCC.bib |only rQCC-2.22.1/rQCC/vignettes/rcc.Rnw | 220 ++-- 39 files changed, 2265 insertions(+), 1868 deletions(-)
Title: Filter Based Feature Selection for 'mlr3'
Description: Extends 'mlr3' with filter methods for feature selection.
Besides standalone filter methods built-in methods of any
machine-learning algorithm are supported. Partial scoring of
multivariate filter methods is supported.
Author: Patrick Schratz [aut, cre] (<https://orcid.org/0000-0003-0748-6624>),
Michel Lang [aut] (<https://orcid.org/0000-0001-9754-0393>),
Bernd Bischl [aut] (<https://orcid.org/0000-0001-6002-6980>),
Martin Binder [aut]
Maintainer: Patrick Schratz <patrick.schratz@gmail.com>
Diff between mlr3filters versions 0.4.2 dated 2021-07-12 and 0.5.0 dated 2022-01-25
DESCRIPTION | 47 ++++-------- MD5 | 98 ++++++++++++++------------- NAMESPACE | 2 NEWS.md | 9 ++ R/Filter.R | 21 +++-- R/FilterAUC.R | 5 + R/FilterAnova.R | 5 + R/FilterCMIM.R | 13 ++- R/FilterCarScore.R | 10 +- R/FilterCorrelation.R | 17 ++-- R/FilterDISR.R | 13 ++- R/FilterFindCorrelation.R | 12 +-- R/FilterImportance.R | 2 R/FilterInformationGain.R | 14 +-- R/FilterJMI.R | 14 +++ R/FilterJMIM.R | 14 ++- R/FilterKruskalTest.R | 16 ++-- R/FilterMIM.R | 13 ++- R/FilterMRMR.R | 13 ++- R/FilterNJMIM.R | 13 ++- R/FilterPermutation.R | 7 - R/FilterRelief.R | 8 +- R/FilterSelectedFeatures.R |only R/FilterVariance.R | 13 ++- R/bibentries.R |only README.md | 42 ++++++----- build |only man/Filter.Rd | 6 + man/figures/logo.png |only man/mlr3filters-package.Rd | 7 - man/mlr_filters.Rd | 1 man/mlr_filters_anova.Rd | 9 ++ man/mlr_filters_auc.Rd | 9 ++ man/mlr_filters_carscore.Rd | 3 man/mlr_filters_cmim.Rd | 14 +++ man/mlr_filters_correlation.Rd | 9 ++ man/mlr_filters_disr.Rd | 14 +++ man/mlr_filters_find_correlation.Rd | 1 man/mlr_filters_importance.Rd | 1 man/mlr_filters_information_gain.Rd | 1 man/mlr_filters_jmi.Rd | 14 +++ man/mlr_filters_jmim.Rd | 14 +++ man/mlr_filters_kruskal_test.Rd | 12 ++- man/mlr_filters_mim.Rd | 14 +++ man/mlr_filters_mrmr.Rd | 14 +++ man/mlr_filters_njmim.Rd | 14 +++ man/mlr_filters_performance.Rd | 1 man/mlr_filters_permutation.Rd | 1 man/mlr_filters_relief.Rd | 1 man/mlr_filters_selected_features.Rd |only man/mlr_filters_variance.Rd | 9 ++ tests/testthat.R | 9 +- tests/testthat/test_FilterSelectedFeatures.R |only 53 files changed, 415 insertions(+), 184 deletions(-)
Title: Incomplete Row-Column Designs
Description: The Row-column designs are widely recommended for experimental situations when there are two well-identified factors that are cross-classified representing known sources of variability. These designs are expected to result a gain in accuracy of estimating treatment comparisons in an experiment as they eliminate the effects of the row and column factors. However, these designs are not readily available when the number of treatments is more than the levels of row and column blocking factors. This package named 'iRoCoDe' generates row-column designs with incomplete rows and columns, by amalgamating two incomplete block designs (D1 and D2). The selection of D1 and D2 (the input designs) can be done from the available incomplete block designs, viz., balanced incomplete block designs/ partially balanced incomplete block designs/ t-designs. (Mcsorley, J.P., Phillips, N.C., Wallis, W.D. and Yucas, J.L. (2005).<doi:10.1007/s10623-003-6149-9>).
Author: Sayantani Karmakar [aut],
Md. Ashraful Haque [aut, cre],
Cini Varghese [aut],
Seema Jaggi [aut],
Eldho Varghese [aut],
Mohd. Harun [aut]
Maintainer: Md. Ashraful Haque <ashrafulhaque664@gmail.com>
Diff between iRoCoDe versions 1.0.0 dated 2021-09-13 and 1.0.1 dated 2022-01-25
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/iRoCoDe.R | 38 +++++++++----------------------------- 3 files changed, 14 insertions(+), 34 deletions(-)
Title: Bayesian Spectral Inference for Stationary Time Series
Description: Implementations of Bayesian parametric, nonparametric and semiparametric procedures for univariate and multivariate time series. The package is based on the methods presented in C. Kirch et al (2018) <doi:10.1214/18-BA1126> and A. Meier (2018) <https://opendata.uni-halle.de//handle/1981185920/13470>. It was supported by DFG grant KI 1443/3-1.
Author: Alexander Meier [aut, cre],
Claudia Kirch [aut],
Matthew C. Edwards [aut],
Renate Meyer [aut]
Maintainer: Alexander Meier <meier.alexander@posteo.de>
Diff between beyondWhittle versions 1.1.1 dated 2019-07-11 and 1.1.2 dated 2022-01-25
DESCRIPTION | 10 ++++++---- MD5 | 24 +++++++++++++++--------- R/gibbs_ar_algorithm.R | 14 +++++++------- R/gibbs_np_algorithm.R | 15 ++++++++------- R/gibbs_var_algorithm.R | 14 +++++++------- R/gibbs_vnp.R | 2 +- R/gibbs_vnp_algorithm.R | 3 ++- R/misc.R | 4 ++-- R/nuisance_models.R | 2 +- src/RcppExports.cpp | 5 +++++ tests |only 11 files changed, 54 insertions(+), 39 deletions(-)
Title: Exploration and Graphics for RivEr Trends
Description: Statistics and graphics for streamflow history,
water quality trends, and the statistical modeling algorithm: Weighted
Regressions on Time, Discharge, and Season (WRTDS). The modeling
method is introduced and discussed in Hirsch et al. (2010) <doi:10.1111/j.1752-1688.2010.00482.x>,
and expanded in Hirsch and De Cicco (2015) <doi:10.3133/tm4A10>.
Author: Robert Hirsch [aut] (<https://orcid.org/0000-0002-4534-075X>),
Laura DeCicco [aut, cre] (<https://orcid.org/0000-0002-3915-9487>),
Tim Cohn [ctb],
David Watkins [ctb],
Lindsay Carr [ctb],
Jennifer Murphy [ctb]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between EGRET versions 3.0.6 dated 2021-06-01 and 3.0.7 dated 2022-01-25
DESCRIPTION | 8 MD5 | 65 ++--- NAMESPACE | 1 NEWS | 5 R/calculateMonthlyResults.R | 10 R/kalman_functions.R | 63 ++++- R/objectDefinitions.R | 26 +- R/plotFluxPred.R | 6 R/plotQTimeDaily.R | 10 R/runGroups.R | 12 - R/runPairs.R | 12 - R/runSeries.R | 30 +- R/saveResults.R | 4 R/sysdata.rda |binary R/tableChange.R | 4 README.md | 168 +++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/EGRET.R | 26 +- inst/doc/EGRET.Rmd | 36 +-- inst/doc/EGRET.html | 352 +++++++++++++++++++++++-------- inst/doc/Overview.html | 196 +++++++++++++++++ inst/doc/parallel.html | 196 +++++++++++++++++ man/figures/README-plotFours-1.png |binary man/figures/README-plotFours-2.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-4-2.png |binary man/figures/README-unnamed-chunk-4-3.png |binary man/plotWRTDSKalman.Rd | 8 man/populateDailySamp.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/tests_calculations.R | 2 tests/testthat/tests_utils.R | 17 + vignettes/EGRET.Rmd | 36 +-- 34 files changed, 990 insertions(+), 303 deletions(-)
Title: Coloured Formatting for Columns
Description: Provides 'pillar' and 'colonnade' generics designed
for formatting columns of data using the full range of colours
provided by modern terminals.
Author: Kirill Müller [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between pillar versions 1.6.4 dated 2021-10-18 and 1.6.5 dated 2022-01-25
pillar-1.6.4/pillar/vignettes/pillar-objects.png |only pillar-1.6.5/pillar/DESCRIPTION | 20 pillar-1.6.5/pillar/MD5 | 207 +- pillar-1.6.5/pillar/NAMESPACE | 23 pillar-1.6.5/pillar/NEWS.md | 37 pillar-1.6.5/pillar/R/aaa-options.R | 24 pillar-1.6.5/pillar/R/char.R | 58 pillar-1.6.5/pillar/R/ctl_colonnade.R | 420 +++- pillar-1.6.5/pillar/R/ctl_compound.R | 129 - pillar-1.6.5/pillar/R/ctl_new_pillar.R | 103 - pillar-1.6.5/pillar/R/ctl_pillar.R | 55 pillar-1.6.5/pillar/R/ctl_pillar_component.R | 64 pillar-1.6.5/pillar/R/ggplot2.R |only pillar-1.6.5/pillar/R/glimpse.R | 2 pillar-1.6.5/pillar/R/multi.R | 19 pillar-1.6.5/pillar/R/num.R | 115 - pillar-1.6.5/pillar/R/ornament.R | 22 pillar-1.6.5/pillar/R/pillar-package.R | 2 pillar-1.6.5/pillar/R/pillar.R | 12 pillar-1.6.5/pillar/R/register-s3.R |only pillar-1.6.5/pillar/R/scientific.R | 8 pillar-1.6.5/pillar/R/shaft-.R | 67 pillar-1.6.5/pillar/R/shaft-simple.R | 34 pillar-1.6.5/pillar/R/sigfig.R | 22 pillar-1.6.5/pillar/R/styles.R | 2 pillar-1.6.5/pillar/R/tbl-format-body.R | 2 pillar-1.6.5/pillar/R/tbl-format-footer.R | 2 pillar-1.6.5/pillar/R/tbl-format-header.R | 2 pillar-1.6.5/pillar/R/tbl-format-setup.R | 15 pillar-1.6.5/pillar/R/tbl-format.R | 4 pillar-1.6.5/pillar/R/testthat.R | 37 pillar-1.6.5/pillar/R/tick.R | 35 pillar-1.6.5/pillar/R/title.R | 7 pillar-1.6.5/pillar/R/type-sum.R | 19 pillar-1.6.5/pillar/R/type.R | 9 pillar-1.6.5/pillar/R/utils.R | 4 pillar-1.6.5/pillar/R/vctr.R | 8 pillar-1.6.5/pillar/R/zzz.R | 46 pillar-1.6.5/pillar/README.md | 2 pillar-1.6.5/pillar/build/vignette.rds |binary pillar-1.6.5/pillar/inst/doc/extending.R | 8 pillar-1.6.5/pillar/inst/doc/extending.Rmd | 13 pillar-1.6.5/pillar/inst/doc/extending.html | 20 pillar-1.6.5/pillar/inst/doc/numbers.Rmd | 2 pillar-1.6.5/pillar/inst/doc/numbers.html | 2 pillar-1.6.5/pillar/inst/doc/printing.R | 42 pillar-1.6.5/pillar/inst/doc/printing.Rmd | 34 pillar-1.6.5/pillar/inst/doc/printing.html | 259 +- pillar-1.6.5/pillar/man/char.Rd | 66 pillar-1.6.5/pillar/man/ctl_new_pillar.Rd | 49 pillar-1.6.5/pillar/man/expect_known_display.Rd | 21 pillar-1.6.5/pillar/man/new_ornament.Rd | 3 pillar-1.6.5/pillar/man/new_pillar.Rd | 8 pillar-1.6.5/pillar/man/new_pillar_shaft.Rd | 20 pillar-1.6.5/pillar/man/new_pillar_title.Rd | 2 pillar-1.6.5/pillar/man/new_pillar_type.Rd | 3 pillar-1.6.5/pillar/man/num.Rd | 126 - pillar-1.6.5/pillar/man/pillar-package.Rd | 2 pillar-1.6.5/pillar/man/pillar_shaft.Rd | 4 pillar-1.6.5/pillar/man/scale_x_num.Rd |only pillar-1.6.5/pillar/man/tbl_format_setup.Rd | 9 pillar-1.6.5/pillar/man/type_sum.Rd | 3 pillar-1.6.5/pillar/tests/testthat/_snaps/ansi |only pillar-1.6.5/pillar/tests/testthat/_snaps/ctl_colonnade.md | 390 ---- pillar-1.6.5/pillar/tests/testthat/_snaps/ctl_colonnade_1.md | 282 +- pillar-1.6.5/pillar/tests/testthat/_snaps/ctl_colonnade_2.md | 330 +-- pillar-1.6.5/pillar/tests/testthat/_snaps/ctl_compound.md |only pillar-1.6.5/pillar/tests/testthat/_snaps/ctl_new_pillar.md | 86 pillar-1.6.5/pillar/tests/testthat/_snaps/format_character.md | 2 pillar-1.6.5/pillar/tests/testthat/_snaps/format_integer64.md | 69 pillar-1.6.5/pillar/tests/testthat/_snaps/format_list.md | 6 pillar-1.6.5/pillar/tests/testthat/_snaps/format_multi.md | 314 --- pillar-1.6.5/pillar/tests/testthat/_snaps/format_unspecified.md | 2 pillar-1.6.5/pillar/tests/testthat/_snaps/ggplot2 |only pillar-1.6.5/pillar/tests/testthat/_snaps/glimpse.md | 56 pillar-1.6.5/pillar/tests/testthat/_snaps/multi.md | 30 pillar-1.6.5/pillar/tests/testthat/_snaps/num.md | 167 + pillar-1.6.5/pillar/tests/testthat/_snaps/ornament.md | 2 pillar-1.6.5/pillar/tests/testthat/_snaps/tbl-format-body.md | 4 pillar-1.6.5/pillar/tests/testthat/_snaps/tbl-format-footer.md | 28 pillar-1.6.5/pillar/tests/testthat/_snaps/tbl-format-setup.md | 973 ++++++++-- pillar-1.6.5/pillar/tests/testthat/_snaps/type_sum.md | 26 pillar-1.6.5/pillar/tests/testthat/_snaps/unicode |only pillar-1.6.5/pillar/tests/testthat/helper-output.R | 4 pillar-1.6.5/pillar/tests/testthat/helper-type-sum.R | 4 pillar-1.6.5/pillar/tests/testthat/test-ctl_colonnade.R | 71 pillar-1.6.5/pillar/tests/testthat/test-ctl_colonnade_1.R | 92 pillar-1.6.5/pillar/tests/testthat/test-ctl_colonnade_2.R | 88 pillar-1.6.5/pillar/tests/testthat/test-ctl_compound.R |only pillar-1.6.5/pillar/tests/testthat/test-ctl_new_pillar.R | 15 pillar-1.6.5/pillar/tests/testthat/test-format_integer64.R | 20 pillar-1.6.5/pillar/tests/testthat/test-format_list.R | 2 pillar-1.6.5/pillar/tests/testthat/test-format_list_of.R | 4 pillar-1.6.5/pillar/tests/testthat/test-format_multi.R | 69 pillar-1.6.5/pillar/tests/testthat/test-format_unspecified.R | 2 pillar-1.6.5/pillar/tests/testthat/test-ggplot2.R |only pillar-1.6.5/pillar/tests/testthat/test-glimpse.R | 24 pillar-1.6.5/pillar/tests/testthat/test-multi.R | 4 pillar-1.6.5/pillar/tests/testthat/test-new-pillar-title.R | 4 pillar-1.6.5/pillar/tests/testthat/test-num.R | 46 pillar-1.6.5/pillar/tests/testthat/test-obj-sum.R | 32 pillar-1.6.5/pillar/tests/testthat/test-ornament.R | 2 pillar-1.6.5/pillar/tests/testthat/test-tbl-format-setup.R | 49 pillar-1.6.5/pillar/tests/testthat/test-ticks.R | 4 pillar-1.6.5/pillar/tests/testthat/test-type_sum.R | 6 pillar-1.6.5/pillar/vignettes/extending.Rmd | 13 pillar-1.6.5/pillar/vignettes/numbers.Rmd | 2 pillar-1.6.5/pillar/vignettes/printing.Rmd | 34 108 files changed, 3083 insertions(+), 2608 deletions(-)
Title: Applied Statistical Hypothesis Tests
Description: Gives some hypothesis test functions (sign test, median and other quantile tests, Wilcoxon signed rank test, coefficient of variation test, test of normal variance, test on weighted sums of Poisson [see Fay and Kim <doi:10.1002/bimj.201600111>], sample size for t-tests with different variances and non-equal n per arm, Behrens-Fisher test, nonparametric ABC intervals, Wilcoxon-Mann-Whitney test [with effect estimates and confidence intervals, see Fay and Malinovsky <doi:10.1002/sim.7890>], two-sample melding tests [see Fay, Proschan, and Brittain <doi:10.1111/biom.12231>], one-way ANOVA allowing var.equal=FALSE [see Brown and Forsythe, 1974, Biometrics]), prevalence confidence intervals that adjust for sensitivity and specificity [see Lang and Reiczigel, 2014 <doi:10.1016/j.prevetmed.2013.09.015>]). The focus is on hypothesis tests that have compatible confidence intervals, but some functions only have confidence intervals (e.g., prevSeSp).
Author: Michael P. Fay
Maintainer: Michael P. Fay <mfay@niaid.nih.gov>
Diff between asht versions 0.9.6 dated 2020-07-03 and 0.9.7 dated 2022-01-25
DESCRIPTION | 8 ++++---- MD5 | 8 +++++--- NAMESPACE | 5 +++-- R/simulateSS.R |only man/asht-package.Rd | 4 ++-- man/simulateSS.Rd |only 6 files changed, 14 insertions(+), 11 deletions(-)
Title: Maximum Likelihood Estimation for Univariate Densities
Description: User-friendly maximum likelihood estimation (Fisher (1921)
<doi:10.1098/rsta.1922.0009>) of univariate densities.
Author: Jonas Moss [aut, cre] (<https://orcid.org/0000-0002-6876-6964>),
Thomas Nagler [ctb]
Maintainer: Jonas Moss <jonas.gjertsen@gmail.com>
Diff between univariateML versions 1.1.0 dated 2020-08-05 and 1.1.1 dated 2022-01-25
DESCRIPTION | 12 - MD5 | 36 ++-- R/functions.R | 1 R/helpers.R | 3 R/mlgumbel.R | 2 R/mlinvgamma.R | 2 R/mlllogis.R | 6 R/mlweibull.R | 2 R/model_select.R | 16 - R/probability_plots.R | 4 README.md | 31 +-- build/vignette.rds |binary inst/doc/copula.html | 296 ++++++++--------------------------- inst/doc/overview.html | 20 +- man/MaximumLikelihoodDistribution.Rd | 1 man/univariateML-package.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test_mlllogis.R | 4 tests/testthat/test_model_select.R | 12 + 19 files changed, 151 insertions(+), 299 deletions(-)
Title: 'RStudio' Addins to Prettify 'JavaScript', 'C++', 'Python', and
More
Description: Provides 'RStudio' addins to prettify 'HTML', 'CSS', 'SCSS', 'JavaScript', 'JSX', 'Markdown', 'C(++)', 'LaTeX', 'Python', 'Julia', 'XML', 'Java', 'JSON', 'Ruby', and to reindent 'C(++)', 'Fortran', 'Java', 'Julia', 'Python', 'SAS', 'Scala', 'Shell', 'SQL' and "TypeScript". Two kinds of addins are provided: 'Prettify' and 'Indent'. The 'Indent' addins only reindent the code, while the 'Prettify' addins also modify the code, e.g. trailing semi-colons are added to 'JavaScript' code when they are missing.
Author: Stéphane Laurent [aut, cre],
James Long and contributors [cph] ('Prettier' library),
Zeb Zhao [cph] ('indent.js' library),
Marijn Haverbeke [cph] ('CodeMirror' library),
George Leslie-Waksman and other contributors [cph] ('sql-formatter'
library),
Austin Cheney [cph] ('prettydiff' library)
Maintainer: Stéphane Laurent <laurent_step@outlook.fr>
Diff between prettifyAddins versions 2.3.0 dated 2021-11-17 and 2.4.0 dated 2022-01-25
DESCRIPTION | 30 +++++---- LICENSE.note | 149 ++++++++++++++++++++++++++++++++++++++++++++++++ MD5 | 16 ++--- NAMESPACE | 67 ++++++++++----------- NEWS.md | 7 ++ R/addins.R | 92 +++++++++++++++-------------- R/prettifyHTML.R |only README.md | 1 inst/rstudio/addins.dcf | 5 + man/prettifyHTML.Rd |only 10 files changed, 270 insertions(+), 97 deletions(-)
More information about prettifyAddins at CRAN
Permanent link
Title: Evaluation of Proximity Programs
Description: A toolbox for coverage evaluation of proximity programs.
Author: Richard Detomasi [aut, cre] (<https://orcid.org/0000-0002-6725-0261>),
German Botto [aut] (<https://orcid.org/0000-0002-4055-9277>)
Maintainer: Richard Detomasi <richard.detomasi@gmail.com>
Diff between EPP versions 0.3.5 dated 2021-12-10 and 0.3.6.1 dated 2022-01-25
DESCRIPTION | 14 ++++++------ MD5 | 14 ++++++------ NAMESPACE | 3 -- NEWS.md | 9 ++++++++ R/assign_nn.R | 19 ++++++++++------- man/centers_epp.Rd | 44 ++++++++++++++++++++-------------------- man/pop_epp.Rd | 42 +++++++++++++++++++------------------- tests/testthat/test-assign_nn.R | 4 +-- 8 files changed, 80 insertions(+), 69 deletions(-)
Title: Non-Interactive Spatial Tools for Raster Processing and
Visualization
Description: S3 classes and methods for manipulation with georeferenced raster data: reading/writing, processing, multi-panel visualization.
Author: Nikita Platonov [aut, cre] (<https://orcid.org/0000-0001-7196-7882>)
Maintainer: Nikita Platonov <platonov@sevin.ru>
Diff between ursa versions 3.9.4 dated 2021-05-22 and 3.9.5 dated 2022-01-25
DESCRIPTION | 6 +- MD5 | 88 +++++++++++++++++------------------ NEWS.md | 44 +++++++++++++---- R/Ops.band_stat.R | 3 - R/classColorTable.R | 7 ++ R/colorize.R | 12 +++- R/compose_design.R | 65 ++++++++++++++++++++++---- R/compose_legend.R | 22 ++++---- R/compose_open.R | 3 + R/conn.open_envi.R | 7 ++ R/conn.read_gdal.R | 2 R/cubehelix.R | 2 R/envi_files.R | 7 ++ R/glance.R | 1 R/identify.R | 8 ++- R/legend_colorbar.R | 6 ++ R/package_raster.R | 2 R/panel_coastline.R | 2 R/panel_decor.R | 6 +- R/panel_plot.R | 4 + R/polygonize.R | 5 +- R/regrid.R | 8 ++- R/session.R | 3 - R/spatial_engine.R | 2 R/spatial_write.R | 24 ++++++++- R/ursa_as.R | 30 ++++++++++++ R/ursa_grid.R | 34 ++++++++----- R/xxx.browse.R | 11 ++++ R/xxx.fasterize.R | 2 R/xxx.geomap.R | 43 +++++++++++++++-- R/xxx.panel_cluster.R | 123 ++++++++++++++++++++++++++++++++++++++++---------- R/xxx.polarmap.R | 8 ++- R/xxx.spatialize.R | 4 + R/yyy.connection.R | 2 R/yyy.prettyLabel.R | 14 +++-- R/yyy.project.R | 11 ++-- R/yyy.tile.R | 10 +++- R/yyy.util.R | 36 +++++++++++--- man/compose_design.Rd | 4 + man/cubehelix.Rd | 2 man/glance.Rd | 4 - man/identify.Rd | 14 +++-- man/package_raster.Rd | 2 man/regrid.Rd | 5 +- man/ursa_grid.Rd | 5 +- 45 files changed, 529 insertions(+), 174 deletions(-)
Title: Asynchronous Disk-Based Representation of Massive Data
Description: Storing very large data objects on a local drive, while still making it possible to manipulate the data in an efficient manner.
Author: Adam Black [aut, cre],
Martijn Schuemie [aut],
Marc A. Suchard [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Adam Black <black@ohdsi.org>
Diff between Andromeda versions 0.5.0 dated 2021-07-02 and 0.6.0 dated 2022-01-25
DESCRIPTION | 16 MD5 | 83 +-- NAMESPACE | 82 +-- NEWS.md | 251 +++++------ R/Andromeda.R | 58 +- R/Indices.R | 380 ++++++++-------- R/LoadingSaving.R | 509 +++++++++++----------- R/Object.R | 821 +++++++++++++++++++----------------- R/Operations.R | 754 ++++++++++++++++----------------- README.md | 172 +++---- build/vignette.rds |binary inst/WORDLIST | 32 - inst/doc/UsingAndromeda.R | 256 +++++------ inst/doc/UsingAndromeda.Rmd | 548 ++++++++++++------------ inst/doc/UsingAndromeda.pdf |binary man/Andromeda-class.Rd | 188 ++++---- man/Andromeda-package.Rd | 68 +- man/andromeda_constructor.Rd | 78 +-- man/appendToTable.Rd | 84 +-- man/batchApply.Rd | 112 ++-- man/batchTest.Rd | 84 +-- man/copyAndromeda.Rd | 58 +- man/createIndex.Rd | 86 +-- man/getAndromedaTempDiskSpace.Rd | 66 +- man/groupApply.Rd | 138 +++--- man/isAndromeda.Rd | 40 - man/isValidAndromeda.Rd | 64 +- man/listIndices.Rd | 74 +-- man/loadAndromeda.Rd | 74 +-- man/names-set-.tbl_Andromeda.Rd |only man/names-set-Andromeda-method.Rd |only man/names.tbl_Andromeda.Rd |only man/removeIndex.Rd | 90 +-- man/restoreDate.Rd | 74 +-- man/restorePosixct.Rd | 78 +-- man/saveAndromeda.Rd | 102 ++-- tests/testthat.R | 4 tests/testthat/test-appending.R | 168 +++---- tests/testthat/test-batching.R | 182 +++---- tests/testthat/test-dates.R | 141 +++--- tests/testthat/test-indices.R | 100 ++-- tests/testthat/test-loadingSaving.R | 216 ++++----- tests/testthat/test-object.R | 353 ++++++++------- vignettes/UsingAndromeda.Rmd | 548 ++++++++++++------------ 44 files changed, 3695 insertions(+), 3537 deletions(-)
Title: Methods to Convert R Data to YAML and Back
Description: Implements the 'libyaml' 'YAML' 1.1 parser and emitter
(<https://pyyaml.org/wiki/LibYAML>) for R.
Author: Jeremy Stephens [aut, cre], Kirill Simonov [aut], Yihui Xie [ctb],
Zhuoer Dong [ctb], Hadley Wickham [ctb], Jeffrey Horner [ctb], reikoch [ctb],
Will Beasley [ctb], Brendan O'Connor [ctb], Gregory R. Warnes [ctb],
Michael Quinn [ctb], Zhian N. Kamvar [ctb]
Maintainer: Shawn Garbett <shawn.garbett@vumc.org>
Diff between yaml versions 2.2.1 dated 2020-02-01 and 2.2.2 dated 2022-01-25
DESCRIPTION | 19 ++++++++++--------- MD5 | 16 ++++++++-------- inst/CHANGELOG | 4 ++++ inst/THANKS | 2 ++ man/as.yaml.Rd | 2 +- man/read_yaml.Rd | 2 +- man/yaml.load.Rd | 2 +- src/r_ext.c | 11 +++++++++++ tests/RUnit.R | 4 +++- 9 files changed, 41 insertions(+), 21 deletions(-)
Title: Administrative Boundaries of Spain
Description: Administrative Boundaries of Spain at several levels
(Autonomous Communities, Provinces, Municipalities) based on the
'GISCO' 'Eurostat' database <https://ec.europa.eu/eurostat/web/gisco>
and 'CartoBase SIANE' from 'Instituto Geografico Nacional'
<https://www.ign.es/>. It also provides a 'leaflet' plugin and the
ability of downloading and processing static tiles.
Author: Diego Hernangómez [aut, cre, cph]
(<https://orcid.org/0000-0001-8457-4658>, rOpenSpain)
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>
Diff between mapSpain versions 0.4.0 dated 2021-10-14 and 0.5.0 dated 2022-01-25
mapSpain-0.4.0/mapSpain/inst/doc/mapSpain.R |only mapSpain-0.4.0/mapSpain/vignettes/tile-1.png |only mapSpain-0.5.0/mapSpain/DESCRIPTION | 6 mapSpain-0.5.0/mapSpain/MD5 | 68 +++- mapSpain-0.5.0/mapSpain/NAMESPACE | 6 mapSpain-0.5.0/mapSpain/NEWS.md | 39 +- mapSpain-0.5.0/mapSpain/R/esp_get_grid_BDN.R |only mapSpain-0.5.0/mapSpain/R/esp_get_grid_EEA.R |only mapSpain-0.5.0/mapSpain/R/esp_get_grid_ESDAC.R |only mapSpain-0.5.0/mapSpain/R/esp_get_grid_MTN.R |only mapSpain-0.5.0/mapSpain/R/esp_get_hypsobath.R | 1 mapSpain-0.5.0/mapSpain/R/layer_spatraster.R | 2 mapSpain-0.5.0/mapSpain/R/mapSpain-package.R | 2 mapSpain-0.5.0/mapSpain/R/sysdata.rda |binary mapSpain-0.5.0/mapSpain/R/utils_download_sianedata.R |only mapSpain-0.5.0/mapSpain/README.md | 66 ++-- mapSpain-0.5.0/mapSpain/build/partial.rdb |only mapSpain-0.5.0/mapSpain/build/vignette.rds |binary mapSpain-0.5.0/mapSpain/data/esp_codelist.rda |binary mapSpain-0.5.0/mapSpain/data/esp_munic.sf.rda |binary mapSpain-0.5.0/mapSpain/data/esp_nuts.sf.rda |binary mapSpain-0.5.0/mapSpain/data/leaflet.providersESP.df.rda |binary mapSpain-0.5.0/mapSpain/data/pobmun19.rda |binary mapSpain-0.5.0/mapSpain/inst/CITATION | 25 - mapSpain-0.5.0/mapSpain/inst/doc/imagery.R |only mapSpain-0.5.0/mapSpain/inst/doc/imagery.Rmd |only mapSpain-0.5.0/mapSpain/inst/doc/imagery.html |only mapSpain-0.5.0/mapSpain/inst/doc/mapSpain.Rmd | 26 - mapSpain-0.5.0/mapSpain/inst/doc/mapSpain.html | 18 - mapSpain-0.5.0/mapSpain/man/esp_get_grid_BDN.Rd |only mapSpain-0.5.0/mapSpain/man/esp_get_grid_EEA.Rd |only mapSpain-0.5.0/mapSpain/man/esp_get_grid_ESDAC.Rd |only mapSpain-0.5.0/mapSpain/man/esp_get_grid_MTN.Rd |only mapSpain-0.5.0/mapSpain/man/esp_get_hypsobath.Rd | 1 mapSpain-0.5.0/mapSpain/man/layer_spatraster.Rd | 2 mapSpain-0.5.0/mapSpain/man/mapSpain-package.Rd | 4 mapSpain-0.5.0/mapSpain/tests/testthat/test-esp_dict.R | 138 +++++----- mapSpain-0.5.0/mapSpain/tests/testthat/test-esp_getTiles.R | 23 - mapSpain-0.5.0/mapSpain/tests/testthat/test-esp_get_can_box.R | 26 - mapSpain-0.5.0/mapSpain/tests/testthat/test-esp_get_grid_BDN.R |only mapSpain-0.5.0/mapSpain/tests/testthat/test-esp_get_grid_EEA.R |only mapSpain-0.5.0/mapSpain/tests/testthat/test-esp_get_grid_ESDAC.R |only mapSpain-0.5.0/mapSpain/tests/testthat/test-esp_get_grid_MTN.R |only mapSpain-0.5.0/mapSpain/vignettes/imagery.Rmd |only mapSpain-0.5.0/mapSpain/vignettes/mapSpain.Rmd | 26 - 45 files changed, 224 insertions(+), 255 deletions(-)
Title: Latent Variable Analysis
Description: Fit a variety of latent variable models, including confirmatory
factor analysis, structural equation modeling and latent growth curve models.
Author: Yves Rosseel [aut, cre] (<https://orcid.org/0000-0002-4129-4477>),
Terrence D. Jorgensen [aut] (<https://orcid.org/0000-0001-5111-6773>),
Nicholas Rockwood [aut] (<https://orcid.org/0000-0001-5931-183X>),
Daniel Oberski [ctb],
Jarrett Byrnes [ctb],
Leonard Vanbrabant [ctb],
Victoria Savalei [ctb],
Ed Merkle [ctb],
Michael Hallquist [ctb],
Mijke Rhemtulla [ctb],
Myrsini Katsikatsou [ctb],
Mariska Barendse [ctb],
Florian Scharf [ctb],
Han Du [ctb]
Maintainer: Yves Rosseel <Yves.Rosseel@UGent.be>
Diff between lavaan versions 0.6-9 dated 2021-06-27 and 0.6-10 dated 2022-01-25
DESCRIPTION | 6 - MD5 | 85 +++++++++++++------------ R/lav_cfa_1fac.R | 14 +++- R/lav_data.R | 15 +++- R/lav_efa_extraction.R | 3 R/lav_efa_pace.R |only R/lav_matrix.R | 82 ++++++++++++++++++++++-- R/lav_matrix_rotate.R | 4 + R/lav_matrix_rotate_methods.R | 61 ++++++++++++++++++ R/lav_model.R | 16 +++- R/lav_model_compute.R | 32 ++++++--- R/lav_model_gradient.R | 23 ++++++ R/lav_model_implied.R | 10 +-- R/lav_model_objective.R | 21 ++++-- R/lav_model_properties.R | 134 +++++++++++++++++++++++++++++----------- R/lav_model_utils.R | 53 ++++++++++++++++ R/lav_mvnorm_cluster.R | 1 R/lav_mvreg_cluster.R |only R/lav_object_print.R | 2 R/lav_objective.R | 25 +++---- R/lav_optim_gn.R | 26 +++++-- R/lav_options.R | 50 ++++++++------- R/lav_partable_attributes.R | 4 - R/lav_partable_subset.R | 4 - R/lav_partable_unrestricted.R | 26 ++++--- R/lav_print.R | 2 R/lav_representation.R | 15 +++- R/lav_representation_lisrel.R | 19 ++++- R/lav_representation_ram.R |only R/lav_samplestats.R | 52 +++------------ R/lav_start.R | 44 ++++++++++++- R/lav_syntax.R | 12 +++ R/lav_syntax_mlist.R |only R/lav_test_diff.R | 20 +++--- R/xxx_sam.R | 139 +++++++++++++++++++++++++++++------------- build |only inst/CITATION | 4 - man/InformativeTesting.Rd | 1 man/cfa.Rd | 4 - man/growth.Rd | 4 - man/lav_model.Rd | 6 + man/lavaan-class.Rd | 4 - man/lavaan.Rd | 4 - man/model.syntax.Rd | 5 - man/sam.Rd | 20 +++--- man/sem.Rd | 4 - 46 files changed, 751 insertions(+), 305 deletions(-)
Title: E-Statistics: Multivariate Inference via the Energy of Data
Description: E-statistics (energy) tests and statistics for multivariate and univariate inference,
including distance correlation, one-sample, two-sample, and multi-sample tests for
comparing multivariate distributions, are implemented. Measuring and testing
multivariate independence based on distance correlation, partial distance correlation,
multivariate goodness-of-fit tests, k-groups and hierarchical clustering based on energy
distance, testing for multivariate normality, distance components (disco) for non-parametric
analysis of structured data, and other energy statistics/methods are implemented.
Author: Maria Rizzo [aut, cre],
Gabor Szekely [aut]
Maintainer: Maria Rizzo <mrizzo@bgsu.edu>
Diff between energy versions 1.7-8 dated 2021-02-22 and 1.7-9 dated 2022-01-25
DESCRIPTION | 9 +- MD5 | 26 +++---- NEWS.md | 6 + R/Emvnorm.R | 38 +++++----- R/dcov.R | 46 ------------ R/energy-deprecated.R | 47 +++++++++++++ R/pdcov-test.R | 39 ++++------ build/partial.rdb |binary man/dcov.Rd | 19 ----- man/dcov.test.Rd | 3 man/energy-deprecated.Rd | 4 + man/normalGOF.Rd | 169 +++++++++++++++++++++++------------------------ man/pdcor.Rd | 40 +++++------ src/RcppExports.cpp | 5 + 14 files changed, 222 insertions(+), 229 deletions(-)
Title: Reinforcement Learning Trees
Description: Random forest with a variety of additional features for regression, classification and survival analysis. The features include: parallel computing with OpenMP, embedded model for selecting the splitting variable (based on Zhu, Zeng & Kosorok, 2015), subject weight, variable weight, tracking subjects used in each tree, etc.
Author: Ruoqing Zhu <teazrq@gmail.com>
Maintainer: Ruoqing Zhu <teazrq@gmail.com>
Diff between RLT versions 3.2.3 dated 2021-09-04 and 3.2.4 dated 2022-01-25
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- inst/NEWS | 6 ++++++ src/RLT.c | 1 - src/RLT_classification.c | 1 - src/RLT_regression.c | 1 - src/RLT_survival.c | 1 - src/RLT_utility.c | 1 - 8 files changed, 18 insertions(+), 17 deletions(-)
Title: Handling Fuzzy Spatial Data
Description: Support for fuzzy spatial objects, their operations, and fuzzy spatial inference models based on Spatial Plateau Algebra.
It employs fuzzy set theory and fuzzy logic as foundation to deal with spatial fuzziness.
It implements underlying concepts defined in the following research papers:
(i) "Spatial Plateau Algebra: An Executable Type System for Fuzzy Spatial Data Types" <doi:10.1109/FUZZ-IEEE.2018.8491565>;
(ii) "A Systematic Approach to Creating Fuzzy Region Objects from Real Spatial Data Sets" <doi:10.1109/FUZZ-IEEE.2019.8858878>;
(iii) "Fuzzy Inference on Fuzzy Spatial Objects (FIFUS) for Spatial Decision Support Systems" <doi:10.1109/FUZZ-IEEE.2017.8015707>.
Author: Anderson Carniel [rth, aut, cre]
(<https://orcid.org/0000-0002-8297-9894>),
Felippe Galdino [rtm, aut] (<https://orcid.org/0000-0003-2594-9733>),
Juliana Philippsen [rtm, aut],
Markus Schneider [rth]
Maintainer: Anderson Carniel <accarniel@ufscar.br>
Diff between fsr versions 1.0.0 dated 2021-09-16 and 1.0.1 dated 2022-01-25
DESCRIPTION | 6 +- MD5 | 22 +++---- NEWS.md | 19 ++++++ R/builder_functions.R | 113 ++++++++++++++++++++++++++++++++++++++-- R/spa_functions.R | 12 ++-- R/utility_functions.R | 48 +++++++++++++--- README.md | 30 ++++++++-- inst/CITATION | 6 +- man/fsr_geometric_operations.Rd | 2 man/fsr_numerical_operations.Rd | 2 man/plot.Rd | 4 - man/spa_creator.Rd | 23 +++++++- 12 files changed, 239 insertions(+), 48 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 1.22.0 dated 2021-12-07 and 1.23.0 dated 2022-01-25
mlflow-1.22.0/mlflow/R/model-mleap.R |only mlflow-1.22.0/mlflow/tests/testthat/test-model-mleap.R |only mlflow-1.23.0/mlflow/DESCRIPTION | 16 ++++++------- mlflow-1.23.0/mlflow/MD5 | 18 ++++++--------- mlflow-1.23.0/mlflow/NAMESPACE | 3 -- mlflow-1.23.0/mlflow/R/model-registry.R | 2 - mlflow-1.23.0/mlflow/R/model.R | 2 - mlflow-1.23.0/mlflow/man/mlflow_save_model.Rd | 14 ----------- mlflow-1.23.0/mlflow/tests/testthat.R | 2 - mlflow-1.23.0/mlflow/tests/testthat/test-model-h2o.R | 6 ++--- mlflow-1.23.0/mlflow/tests/testthat/test-model-xgboost.R | 6 ++--- 11 files changed, 26 insertions(+), 43 deletions(-)
Title: Robust Methods for Multiway Data Analysis, Applicable also for
Compositional Data
Description: Provides methods for multiway data analysis by means of Parafac
and Tucker 3 models. Robust versions (Engelen and Hubert (2011) <doi:10.1016/j.aca.2011.04.043>) and versions
for compositional data are also provided (Gallo (2015) <doi:10.1080/03610926.2013.798664>, Di Palma et al. (2018) <doi:10.1080/02664763.2017.1381669>.
Author: Valentin Todorov [aut, cre] (<https://orcid.org/0000-0003-4215-0245>),
Maria Anna Di Palma [aut],
Michele Gallo [aut]
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between rrcov3way versions 0.1-18 dated 2020-01-16 and 0.2-1 dated 2022-01-25
rrcov3way-0.1-18/rrcov3way/R/varimcoco.R |only rrcov3way-0.1-18/rrcov3way/man/orth.Rd |only rrcov3way-0.1-18/rrcov3way/man/orthmax2.Rd |only rrcov3way-0.2-1/rrcov3way/ChangeLog | 38 rrcov3way-0.2-1/rrcov3way/DESCRIPTION | 28 rrcov3way-0.2-1/rrcov3way/MD5 | 66 rrcov3way-0.2-1/rrcov3way/NAMESPACE | 14 rrcov3way-0.2-1/rrcov3way/R/Parafac.R | 624 ++---- rrcov3way-0.2-1/rrcov3way/R/Tucker3.R | 562 +++--- rrcov3way-0.2-1/rrcov3way/R/cp_als.R | 98 - rrcov3way-0.2-1/rrcov3way/R/datadoc.R | 6 rrcov3way-0.2-1/rrcov3way/R/mtx-utils.R | 156 - rrcov3way-0.2-1/rrcov3way/R/plot-utils.R | 87 rrcov3way-0.2-1/rrcov3way/R/t3_als.R | 126 - rrcov3way-0.2-1/rrcov3way/R/utils.R | 71 rrcov3way-0.2-1/rrcov3way/README.md |only rrcov3way-0.2-1/rrcov3way/man/Kojima.Rd | 3 rrcov3way-0.2-1/rrcov3way/man/Parafac.Rd | 18 rrcov3way-0.2-1/rrcov3way/man/Tucker3.Rd | 27 rrcov3way-0.2-1/rrcov3way/man/amino.Rd | 112 - rrcov3way-0.2-1/rrcov3way/man/congruence.Rd | 101 - rrcov3way-0.2-1/rrcov3way/man/cp_als.Rd | 216 +- rrcov3way-0.2-1/rrcov3way/man/do3Rotate.Rd | 77 rrcov3way-0.2-1/rrcov3way/man/do3Scale.Rd | 2 rrcov3way-0.2-1/rrcov3way/man/elind.Rd | 2 rrcov3way-0.2-1/rrcov3way/man/krp.Rd | 76 rrcov3way-0.2-1/rrcov3way/man/mtrace.Rd | 90 rrcov3way-0.2-1/rrcov3way/man/permute.Rd | 9 rrcov3way-0.2-1/rrcov3way/man/plot-methods.Rd | 14 rrcov3way-0.2-1/rrcov3way/man/utils.Rd | 24 rrcov3way-0.2-1/rrcov3way/man/va3way.Rd | 4 rrcov3way-0.2-1/rrcov3way/tests/tparafac-err.R |only rrcov3way-0.2-1/rrcov3way/tests/tparafac-err.Rout.save |only rrcov3way-0.2-1/rrcov3way/tests/tparafac.R | 54 rrcov3way-0.2-1/rrcov3way/tests/tparafac.Rout.save | 478 ++++- rrcov3way-0.2-1/rrcov3way/tests/ttucker3.R | 58 rrcov3way-0.2-1/rrcov3way/tests/ttucker3.Rout.save | 1582 +++++++++++------ 37 files changed, 2871 insertions(+), 1952 deletions(-)
Title: Multivariate Adaptive Shrinkage
Description: Implements the multivariate adaptive shrinkage (mash)
method of Urbut et al (2019) <DOI:10.1038/s41588-018-0268-8> for
estimating and testing large numbers of effects in many conditions
(or many outcomes). Mash takes an empirical Bayes approach to
testing and effect estimation; it estimates patterns of similarity
among conditions, then exploits these patterns to improve accuracy
of the effect estimates. The core linear algebra is implemented in
C++ for fast model fitting and posterior computation.
Author: Matthew Stephens [aut],
Sarah Urbut [aut],
Gao Wang [aut],
Yuxin Zou [aut],
Yunqi Yang [ctb],
Sam Roweis [cph],
David Hogg [cph],
Jo Bovy [cph],
Peter Carbonetto [aut, cre]
Maintainer: Peter Carbonetto <peter.carbonetto@gmail.com>
Diff between mashr versions 0.2.50 dated 2021-05-23 and 0.2.57 dated 2022-01-25
mashr-0.2.50/mashr/man/estimate_null_correlation.Rd |only mashr-0.2.57/mashr/DESCRIPTION | 12 mashr-0.2.57/mashr/MD5 | 68 - mashr-0.2.57/mashr/NAMESPACE | 2 mashr-0.2.57/mashr/R/data2cov.R | 22 mashr-0.2.57/mashr/R/est_cor.R | 40 mashr-0.2.57/mashr/R/set_data.R | 6 mashr-0.2.57/mashr/README.md | 4 mashr-0.2.57/mashr/inst/doc/eQTL_outline.html | 29 mashr-0.2.57/mashr/inst/doc/flash_mash.html | 23 mashr-0.2.57/mashr/inst/doc/intro_correlations.R | 45 mashr-0.2.57/mashr/inst/doc/intro_correlations.Rmd | 95 + mashr-0.2.57/mashr/inst/doc/intro_correlations.html | 110 + mashr-0.2.57/mashr/inst/doc/intro_mash.html | 44 mashr-0.2.57/mashr/inst/doc/intro_mash_dd.html | 23 mashr-0.2.57/mashr/inst/doc/intro_mashbaselinemean.html | 27 mashr-0.2.57/mashr/inst/doc/intro_mashcommonbaseline.html | 33 mashr-0.2.57/mashr/inst/doc/mash_sampling.R | 6 mashr-0.2.57/mashr/inst/doc/mash_sampling.Rmd | 6 mashr-0.2.57/mashr/inst/doc/mash_sampling.html | 43 mashr-0.2.57/mashr/inst/doc/simulate_noncanon.html | 23 mashr-0.2.57/mashr/man/cov_ed.Rd | 2 mashr-0.2.57/mashr/man/cov_flash.Rd | 8 mashr-0.2.57/mashr/man/mash_estimate_corr_em.Rd |only mashr-0.2.57/mashr/man/mash_set_data.Rd | 4 mashr-0.2.57/mashr/man/mash_update_data.Rd | 2 mashr-0.2.57/mashr/src/Makevars.in | 2 mashr-0.2.57/mashr/src/RcppExports.cpp | 5 mashr-0.2.57/mashr/src/mash.cpp | 2 mashr-0.2.57/mashr/tests/testthat/ExDeconDemo_c.log | 807 ++++++++++++++ mashr-0.2.57/mashr/tests/testthat/test_estimate_cor.R | 10 mashr-0.2.57/mashr/tests/testthat/test_getfunctions.R | 2 mashr-0.2.57/mashr/tests/testthat/test_precomputed.R | 4 mashr-0.2.57/mashr/tests/testthat/test_sampling.R | 10 mashr-0.2.57/mashr/vignettes/intro_correlations.Rmd | 95 + mashr-0.2.57/mashr/vignettes/mash_sampling.Rmd | 6 36 files changed, 1392 insertions(+), 228 deletions(-)
More information about conformalInference.multi at CRAN
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More information about conformalInference.fd at CRAN
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