Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cre, cph],
Paul Buerkner [ctb],
Maxime Herve [ctb],
Jonathon Love [ctb],
Fernando Miguez [ctb],
Hannes Riebl [ctb],
Henrik Singmann [ctb]
Maintainer: Russell V. Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.7.3 dated 2022-03-26 and 1.7.4-1 dated 2022-05-14
emmeans-1.7.3/emmeans/man/add_grouping.Rd |only emmeans-1.7.4-1/emmeans/DESCRIPTION | 10 emmeans-1.7.4-1/emmeans/MD5 | 61 - emmeans-1.7.4-1/emmeans/NAMESPACE | 2 emmeans-1.7.4-1/emmeans/NEWS.md | 18 emmeans-1.7.4-1/emmeans/R/0nly-internal.R | 20 emmeans-1.7.4-1/emmeans/R/MCMC-support.R | 4 emmeans-1.7.4-1/emmeans/R/brms-support.R | 5 emmeans-1.7.4-1/emmeans/R/contrast.R | 41 - emmeans-1.7.4-1/emmeans/R/emm-contr.R | 62 - emmeans-1.7.4-1/emmeans/R/factors.R |only emmeans-1.7.4-1/emmeans/R/helpers.R | 8 emmeans-1.7.4-1/emmeans/R/nested.R | 117 -- emmeans-1.7.4-1/emmeans/R/qdrg.R | 83 +- emmeans-1.7.4-1/emmeans/build/vignette.rds |binary emmeans-1.7.4-1/emmeans/inst/doc/FAQs.html | 404 +++++++-- emmeans-1.7.4-1/emmeans/inst/doc/basics.html | 471 +++++++++-- emmeans-1.7.4-1/emmeans/inst/doc/comparisons.html | 280 +++++- emmeans-1.7.4-1/emmeans/inst/doc/confidence-intervals.html | 250 ++++-- emmeans-1.7.4-1/emmeans/inst/doc/interactions.html | 320 ++++++- emmeans-1.7.4-1/emmeans/inst/doc/messy-data.html | 358 +++++++- emmeans-1.7.4-1/emmeans/inst/doc/models.html | 486 ++++++++++- emmeans-1.7.4-1/emmeans/inst/doc/predictions.html | 126 ++- emmeans-1.7.4-1/emmeans/inst/doc/sophisticated.html | 305 +++++-- emmeans-1.7.4-1/emmeans/inst/doc/transformations.html | 488 +++++++++-- emmeans-1.7.4-1/emmeans/inst/doc/utilities.html | 255 ++++-- emmeans-1.7.4-1/emmeans/inst/doc/vignette-topics.html | 363 ++++++-- emmeans-1.7.4-1/emmeans/inst/doc/xplanations.html | 252 +++++- emmeans-1.7.4-1/emmeans/inst/doc/xtending.html | 529 +++++++++++-- emmeans-1.7.4-1/emmeans/man/contrast.Rd | 26 emmeans-1.7.4-1/emmeans/man/emmc-functions.Rd | 25 emmeans-1.7.4-1/emmeans/man/manip-factors.Rd |only emmeans-1.7.4-1/emmeans/man/qdrg.Rd | 49 + 33 files changed, 4284 insertions(+), 1134 deletions(-)
Title: R Wrapper for the 'Bit.ly' and 'Is.gd'/'v.gd' URL Shortening
Services
Description: Allows using two URL shortening services, which also provide
expanding and analytic functions. Specifically developed for 'Bit.ly' (which requires OAuth2) and 'is.gd' (no API key).
Author: John Malc [aut, cre] ,
Andrea Dodet [ctb] ,
Stephen Synchronicity [ctb]
Maintainer: John Malc <cincenko@outlook.com>
Diff between urlshorteneR versions 1.5.1 dated 2021-11-02 and 1.5.4 dated 2022-05-14
DESCRIPTION | 18 +-- MD5 | 16 +-- NEWS | 2 README.md | 2 build/vignette.rds |binary inst/doc/Tutorial.R | 14 +- inst/doc/Tutorial.Rmd | 14 +- inst/doc/Tutorial.html | 241 ++++++++++++++++++++++++++++++++++++++++++++----- vignettes/Tutorial.Rmd | 14 +- 9 files changed, 262 insertions(+), 59 deletions(-)
Title: Multiple Mediation Analysis for Big Data Sets
Description: Used for general multiple mediation analysis with big data sets.
Author: Qingzhao Yu and Bin Li
Maintainer: Qingzhao Yu <qyu@lsuhsc.edu>
Diff between mmabig versions 3.0-0 dated 2020-09-20 and 3.1-0 dated 2022-05-14
DESCRIPTION | 12 MD5 | 20 NAMESPACE | 1 R/mmabig.r | 27 build/vignette.rds |binary inst/doc/MMABIGvignette.R | 40 - inst/doc/MMABIGvignette.Rmd | 2 inst/doc/MMABIGvignette.html | 1162 +++++++++++++++++++++++++------------------ man/mmabig-package.Rd | 2 vignettes/MMABIGvignette.Rmd | 2 vignettes/vignette.bib | 162 +++-- 11 files changed, 834 insertions(+), 596 deletions(-)
Title: Species Sensitivity Distributions
Description: Species sensitivity distributions are cumulative probability
distributions which are fitted to toxicity concentrations for
different species as described by Posthuma et al.(2001)
<isbn:9781566705783>. The ssdtools package uses Maximum Likelihood to
fit distributions such as the gamma, log-logistic, log-normal and
Weibull to censored and/or weighted data. Multiple distributions can
be averaged using Akaike Information Criteria. Confidence intervals
on hazard concentrations and proportions are produced by parametric
bootstrapping.
Author: Joe Thorley [aut, cre, ctr] ,
Carl Schwarz [aut, ctr],
Rebecca Fisher [ctb],
David Fox [ctb],
Angeline Tillmanns [ctb],
Ali Azizishirazi [ctb],
Kathleen McTavish [ctb],
Heather Thompson [ctb],
Andy Teucher [ctb],
Seb Dalgarno [ctb] ,
Emilie Doussanto [...truncated...]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between ssdtools versions 1.0.1 dated 2022-04-10 and 1.0.2 dated 2022-05-14
DESCRIPTION | 79 +--- MD5 | 116 +++--- NEWS.md | 5 R/llogis-llogis.R | 2 R/lnorm-lnorm.R | 2 R/params.R | 3 README.md | 5 build/vignette.rds |binary inst/WORDLIST | 4 inst/doc/distributions.html | 8 inst/doc/exposure-plots.Rmd | 2 inst/doc/exposure-plots.html | 12 inst/doc/faqs.html | 8 inst/doc/small-sample-bias-ref.html | 4 inst/doc/ssdtools.html | 10 man/comma_signif.Rd | 2 man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/params.Rd | 4 man/ssdtools-package.Rd | 3 tests/testthat/_snaps/autoplot/autoplot.png |binary tests/testthat/_snaps/autoplot/autoplot_new.png |binary tests/testthat/_snaps/autoplot/autoplot_rescale.png |binary tests/testthat/_snaps/fit/tidy_stable_computable.csv | 4 tests/testthat/_snaps/glance/fit_cens.csv | 6 tests/testthat/_snaps/glance/fit_cens_n.csv | 2 tests/testthat/_snaps/hc/hc.csv | 4 tests/testthat/_snaps/hc/hc145.csv | 2 tests/testthat/_snaps/hc/hc168.csv | 2 tests/testthat/_snaps/hc/hc_30.csv | 2 tests/testthat/_snaps/hc/hc_cis_chloride50.csv | 4 tests/testthat/_snaps/hc/hc_err.csv | 2 tests/testthat/_snaps/hc/hc_err_avg.csv | 2 tests/testthat/_snaps/hc/hc_err_na.csv | 2 tests/testthat/_snaps/hc/hc_err_two.csv | 2 tests/testthat/_snaps/hp/hp.csv | 2 tests/testthat/_snaps/lnorm-lnorm/plot_anonb.png |binary tests/testthat/_snaps/match-moments/cdf.png |binary tests/testthat/_snaps/plot-cdf/fits.png |binary tests/testthat/_snaps/plot-cdf/fits_average.png |binary tests/testthat/_snaps/plot-cdf/fits_delta.png |binary tests/testthat/_snaps/plot-cdf/fits_rescale.png |binary tests/testthat/_snaps/plot-cdf/list.png |binary tests/testthat/_snaps/plot/plot.png |binary tests/testthat/_snaps/predict/pred_cis.csv | 198 +++++------ tests/testthat/_snaps/predict/pred_dists.csv | 198 +++++------ tests/testthat/_snaps/predict/pred_notaverage.csv | 226 ++++++------- tests/testthat/_snaps/ssd-plot/boron_breaks.png |binary tests/testthat/_snaps/ssd-plot/boron_cens_pred.png |binary tests/testthat/_snaps/ssd-plot/boron_cens_pred_ribbon.png |binary tests/testthat/_snaps/ssd-plot/boron_cens_pred_species.png |binary tests/testthat/_snaps/ssd-plot/boron_pred.png |binary tests/testthat/_snaps/ssd-plot/boron_pred_label.png |binary tests/testthat/_snaps/ssd-plot/boron_pred_ribbon.png |binary tests/testthat/_snaps/ssd-plot/boron_pred_shift_x.png |binary tests/testthat/_snaps/ssd-plot/missing_order.png |binary tests/testthat/test-llogis-llogis.R | 2 tests/testthat/test-lnorm-lnorm.R | 12 vignettes/exposure-plots.Rmd | 2 59 files changed, 467 insertions(+), 476 deletions(-)
Title: Split Generalized Linear Models
Description: Functions to compute split generalized linear models. The approach fits
generalized linear models that split the covariates into groups. The
optimal split of the variables into groups and the regularized estimation
of the coefficients are performed by minimizing an objective function
that encourages sparsity within each group and diversity among them.
Example applications can be found in Christidis et al. (2021)
<arXiv:2102.08591>.
Author: Anthony Christidis [aut, cre],
Stefan Van Aelst [aut],
Ruben Zamar [aut]
Maintainer: Anthony Christidis <anthony.christidis@stat.ubc.ca>
Diff between SplitGLM versions 1.0.2 dated 2021-02-27 and 1.0.3 dated 2022-05-14
DESCRIPTION | 21 ++++++++------ MD5 | 20 ++++++------- NEWS | 5 ++- README.md | 2 - src/CV_Split_WEN.cpp | 55 +++++++++++++++----------------------- src/CV_Split_WEN.hpp | 8 +---- src/CV_WEN.cpp | 31 +++++++++------------ src/CV_WEN.hpp | 4 -- src/RcppExports.cpp | 5 +++ src/Split_WEN.hpp | 2 - tests/testthat/test_cv_function.R | 11 +------ 11 files changed, 75 insertions(+), 89 deletions(-)
Title: Bayesian Modeling and Analysis of Spatially Correlated Survival
Data
Description: Provides several Bayesian survival models for spatial/non-spatial survival data: proportional hazards (PH), accelerated failure time (AFT), proportional odds (PO), and accelerated hazards (AH), a super model that includes PH, AFT, PO and AH as special cases, Bayesian nonparametric nonproportional hazards (LDDPM), generalized accelerated failure time (GAFT), and spatially smoothed Polya tree density estimation. The spatial dependence is modeled via frailties under PH, AFT, PO, AH and GAFT, and via copulas under LDDPM and PH. Model choice is carried out via the logarithm of the pseudo marginal likelihood (LPML), the deviance information criterion (DIC), and the Watanabe-Akaike information criterion (WAIC). See Zhou, Hanson and Zhang (2020) <doi:10.18637/jss.v092.i09>.
Author: Haiming Zhou [aut, cre, cph],
Timothy Hanson [aut]
Maintainer: Haiming Zhou <haiming2019@gmail.com>
Diff between spBayesSurv versions 1.1.5 dated 2021-01-26 and 1.1.6 dated 2022-05-14
DESCRIPTION | 16 - MD5 | 44 ++-- NAMESPACE | 85 +++---- man/GetCurves.Rd | 2 man/SpatDensReg.Rd | 358 ++++++++++++++++----------------- man/SuperSurvRegBayes.Rd | 454 +++++++++++++++++++++--------------------- man/anovaDDP.Rd | 2 man/baseline.Rd | 2 man/bspline.Rd | 84 +++---- man/cox.snell.survregbayes.Rd | 108 ++++----- man/frailtyGAFT.Rd | 2 man/frailtyprior.Rd | 46 ++-- man/indeptCoxph.Rd | 3 man/predict.bspline.Rd | 70 +++--- man/spCopulaCoxph.Rd | 2 man/spCopulaDDP.Rd | 2 man/survregbayes.Rd | 2 man/survregbayes2.Rd | 2 src/spSurv_AFT_BP.cpp | 6 src/spSurv_AH_BP.cpp | 6 src/spSurv_LDTFP_tools.cpp | 15 - src/spSurv_PH_BP.cpp | 6 src/spSurv_PO_BP.cpp | 6 23 files changed, 661 insertions(+), 662 deletions(-)
Title: Query 'SWI'-'Prolog' from R
Description: This R package embeds 'SWI'-'Prolog', <https://www.swi-prolog.org/>, so that R can send deterministic and non-deterministic queries to 'prolog' ('consult', 'query'/'submit', 'once', 'findall').
Author: Matthias Gondan
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rolog versions 0.9.3 dated 2022-05-04 and 0.9.4 dated 2022-05-14
DESCRIPTION | 10 MD5 | 121 +- NEWS.md | 9 R/consult.R | 5 R/findall.R | 26 R/once.R | 22 inst/doc/rolog.R | 137 +-- inst/doc/rolog.Rmd | 1018 +++++++++++------------ inst/doc/rolog.html | 833 +++++++----------- inst/pl/family.pl | 25 inst/pl/interval.pl | 13 inst/pl/mathjax.pl |only inst/pl/r_eval.pl | 4 inst/pl/telescope.pl | 1 man/consult.Rd | 2 man/findall.Rd | 2 man/once.Rd | 2 src/Makevars.ucrt | 3 src/swipl-devel/VERSION | 2 src/swipl-devel/library/aggregate.pl | 11 src/swipl-devel/library/dif.pl | 14 src/swipl-devel/packages/archive/CMakeLists.txt | 12 src/swipl-devel/packages/archive/archive.pl | 29 src/swipl-devel/packages/archive/archive4pl.c | 298 ++++-- src/swipl-devel/packages/archive/test_archive.pl | 27 src/swipl-devel/packages/clib/clib.h | 2 src/swipl-devel/packages/clib/error.c | 10 src/swipl-devel/packages/clib/nonblockio.c | 2 src/swipl-devel/packages/clib/process.c | 3 src/swipl-devel/packages/cpp/range_ffi4pl.c | 1 src/swipl-devel/packages/ssl/CMakeLists.txt | 4 src/swipl-devel/packages/ssl/mkcerts.pl.in | 5 src/swipl-devel/scripts/make-ppa | 2 src/swipl-devel/scripts/update-macports | 2 src/swipl-devel/src/ATOMS | 2 src/swipl-devel/src/CMakeLists.txt | 4 src/swipl-devel/src/SWI-Prolog.h | 2 src/swipl-devel/src/os/SWI-Stream.h | 4 src/swipl-devel/src/os/pl-file.c | 130 ++ src/swipl-devel/src/os/pl-file.h | 2 src/swipl-devel/src/os/pl-prologflag.c | 4 src/swipl-devel/src/os/pl-stream.c | 30 src/swipl-devel/src/os/windows/uxnt.c | 17 src/swipl-devel/src/pl-arith.c | 97 +- src/swipl-devel/src/pl-coverage.c |only src/swipl-devel/src/pl-coverage.h |only src/swipl-devel/src/pl-ext.c | 4 src/swipl-devel/src/pl-fli.c | 6 src/swipl-devel/src/pl-global.h | 7 src/swipl-devel/src/pl-gmp.c | 4 src/swipl-devel/src/pl-incl.h | 20 src/swipl-devel/src/pl-pro.c | 1 src/swipl-devel/src/pl-setup.c | 6 src/swipl-devel/src/pl-srcfile.c | 42 src/swipl-devel/src/pl-thread.c | 5 src/swipl-devel/src/pl-trace.c | 8 src/swipl-devel/src/pl-vmi.c | 32 src/swipl-devel/src/pl-vmi.h | 50 - src/swipl-devel/src/pl-wam.c | 22 src/swipl-devel/src/test.pl | 1 tests/testthat/test-rolog.R | 4 vignettes/bibliography.bibtex | 60 - vignettes/rolog.Rmd | 1018 +++++++++++------------ 63 files changed, 2166 insertions(+), 2073 deletions(-)
Title: Relative Distribution Methods
Description: Tools for the comparison of distributions. This includes nonparametric estimation of the relative distribution PDF and CDF and numerical summaries as described in "Relative Distribution Methods in the Social Sciences" by Mark S. Handcock and Martina Morris, Springer-Verlag, 1999, Springer-Verlag, ISBN 0387987789.
Author: Mark S. Handcock <handcock@stat.ucla.edu>
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>
Diff between reldist versions 1.7-0 dated 2022-01-03 and 1.7-1 dated 2022-05-14
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 1 - R/wtd.quantile.R | 36 ++++++++++++++++++++++++++++++------ build/partial.rdb |binary man/wtd.iqr.Rd | 4 ++-- man/wtd.quantile.Rd | 4 ++-- 7 files changed, 45 insertions(+), 22 deletions(-)
Title: Empirical Dynamic Modeling ('EDM')
Description: An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Author: Joseph Park [aut, cre] ,
Cameron Smith [aut] ,
George Sugihara [aut, ccp] ,
Ethan Deyle [aut] ,
Erik Saberski [ctb] ,
Hao Ye [ctb] ,
The Regents of the University of California [cph]
Maintainer: Joseph Park <JosephPark@IEEE.org>
Diff between rEDM versions 1.11.0 dated 2022-04-15 and 1.12.0 dated 2022-05-14
DESCRIPTION | 8 - MD5 | 36 ++++---- NAMESPACE | 1 NEWS.md | 5 - R/EDM.R | 164 ++++++++++++++++++++----------------- R/Examples.R | 44 ++++++++-- build/vignette.rds |binary man/EmbedDimension.Rd | 17 ++- man/PredictInterval.Rd | 18 +++- man/PredictNonlinear.Rd | 17 +++ src/EmbedDim.cpp | 42 +++++---- src/PredictInterval.cpp | 8 + src/PredictNL.cpp | 70 ++++++++-------- src/RcppEDMCommon.cpp | 102 ++++++++++++----------- src/RcppEDMCommon.h | 6 + src/cppEDM/src/API.h | 186 +++++++++++++++++++++++-------------------- src/cppEDM/src/Eval.cc | 157 ++++++++++++++++++++++-------------- src/cppEDM/src/Parameter.cc | 2 vignettes/rEDM-tutorial.html | 168 ++++++++++++++++---------------------- 19 files changed, 591 insertions(+), 460 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading, and in some cases writing, foreign files
containing spectral data from spectrometers and their associated software,
output from daylight simulation models in common use, and some spectral
data repositories. As well as functions for exchange of spectral data with
other R packages. Part of the 'r4photobiology' suite,
Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb] ,
Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.23 dated 2021-10-11 and 0.4.24 dated 2022-05-14
DESCRIPTION | 21 MD5 | 47 NAMESPACE | 5 NEWS.md | 14 R/color-wrappers.r |only R/on-load.r |only R/read-cid-spectravue-csv.r |only R/read-foreign2mspct.r |only R/read-licor-prn.r | 1 R/read-licor-txt.r | 1 R/read-tuv-file.r | 48 R/read-wasatch-csv.r | 14 README.md | 6 build/partial.rdb |binary build/vignette.rds |binary inst/doc/user-guide.R | 25 inst/doc/user-guide.Rmd | 48 inst/doc/user-guide.html | 1669 ++++++++++++--------- inst/extdata/cid-spectravue-Abs-Measurements.csv |only inst/extdata/cid-spectravue-Rpc-Measurements.csv |only inst/extdata/cid-spectravue-multi-Measurements.csv |only man/read_cid_spectravue_csv.Rd |only man/read_foreign2mspct.Rd |only man/read_li180_txt.Rd | 1 man/read_licor_prn.Rd | 1 man/read_wasatch_csv.Rd | 4 man/spct_CCT.Rd |only man/spct_CRI.Rd |only man/spct_SSI.Rd |only tests/testthat/test-cid.R |only vignettes/user-guide.Rmd | 48 31 files changed, 1241 insertions(+), 712 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input / Output
Description: Functions for the input/output and visualization of
medical imaging data that follow either the 'ANALYZE', 'NIfTI' or 'AFNI'
formats. This package is part of the Rigorous Analytics bundle.
Author: Brandon Whitcher [aut, cre],
Volker Schmid [aut],
Andrew Thornton [aut],
Karsten Tabelow [ctb],
Jon Clayden [ctb],
John Muschelli [aut]
Maintainer: Brandon Whitcher <bwhitcher@gmail.com>
Diff between oro.nifti versions 0.11.0 dated 2020-09-08 and 0.11.1 dated 2022-05-14
DESCRIPTION | 10 ++++------ MD5 | 8 ++++---- NEWS.md | 4 ++++ R/plot.R | 14 +++++++------- inst/CITATION | 5 ++--- 5 files changed, 21 insertions(+), 20 deletions(-)
Title: Functions for Optimal Matching
Description: Distance based bipartite matching using minimum cost flow, oriented
to matching of treatment and control groups in observational studies (Hansen
and Klopfer 2006 <doi:10.1198/106186006X137047>). Routines are provided to
generate distances from generalised linear models (propensity score
matching), formulas giving variables on which to limit matched distances,
stratified or exact matching directives, or calipers, alone or in
combination.
Author: Ben Hansen [aut],
Mark Fredrickson [aut],
Josh Errickson [cre, aut],
Josh Buckner [aut],
Adam Rauh [ctb]
Maintainer: Josh Errickson <jerrick@umich.edu>
Diff between optmatch versions 0.10.1 dated 2022-05-13 and 0.10.2 dated 2022-05-14
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NEWS.md | 12 ++++++++---- 3 files changed, 15 insertions(+), 11 deletions(-)
Title: High-Dimensional Penalized Regression
Description: Algorithms for lasso and fused-lasso problems: implementation of
the lars algorithm for lasso and fusion penalization and EM-based
algorithms for (logistic) lasso and fused-lasso penalization.
Author: Quentin Grimonprez [aut, cre],
Serge Iovleff [aut]
Maintainer: Quentin Grimonprez <quentingrim@yahoo.fr>
Diff between HDPenReg versions 0.94.7 dated 2020-10-05 and 0.94.8 dated 2022-05-14
DESCRIPTION | 10 - MD5 | 44 +++---- R/EM.R | 137 ++++++++++++++---------- R/LarsPath.R | 250 +++++++++++++++++++++++---------------------- R/cvEM.R | 203 +++++++++++++++++++----------------- R/cvlars.R | 150 +++++++++++++++------------ R/lars.R | 66 +++++++---- R/predict.R | 201 ++++++++++++++++++------------------ R/simulation.R | 100 ++++++++++-------- build/vignette.rds |binary inst/doc/HDPenReg.pdf |binary man/EMcvfusedlasso.Rd | 6 - man/EMcvlasso.Rd | 6 - man/EMfusedlasso.Rd | 3 man/EMlasso.Rd | 9 + man/HDcvlars.Rd | 6 - man/LarsPath-class.Rd | 9 + man/coef.LarsPath.Rd | 6 - man/plot-methods.Rd | 3 man/predict.LarsPath.Rd | 4 src/HDPenReg/EMCVmain.cpp | 3 src/HDPenReg/EMmain.cpp | 8 - src/HDPenReg/lars/Lars.cpp | 2 23 files changed, 676 insertions(+), 550 deletions(-)
Title: Market Structure, Concentration and Inequality Measures
Description: Based on individual market shares of all participants in a
market or space or their respective sales figures, the package offers
a set of different structural and concentration measures frequently -
and not so frequently - used in research and in practice. Measures can
be calculated in groups or individually. The calculated measure or the
resulting vector in table format should help practitioners make more
informed decisions. Methods used in this package are from:
1. Chang, E. J., Guerra, S. M., de Souza Penaloza, R. A. & Tabak, B. M.
(2005) "Banking concentration: the Brazilian case".
2. Cobham, A. and A. Summer (2013). "Is It All About the Tails? The
Palma Measure of Income Inequality".
3. Garcia Alba Idunate, P. (1994). "Un Indice de dominancia para el
analisis de la estructura de los mercados".
4. Ginevicius, R. and S. Cirba (2009). "Additive measurement of market
concentration" <doi:10.3846/1611-1699.2009.10.191-198>.
5. Herfindahl, O. C. (1950), "Concentration in the steel industry (PhD thesis)".
6. Hirschmann, A. O. (1945), "National power and structure of foreign trade".
7. Melnik, A., O. Shy, and R. Stenbacka (2008), "Assessing market dominance"
<doi:10.1016/j.jebo.2008.03.010>.
8. Palma, J. G. (2006). "Globalizing Inequality: 'Centrifugal' and
'Centripetal' Forces at Work".
9. Shannon, C. E. (1948). "A Mathematical Theory of Communication".
Author: Andreas Schneider [aut, cre]
Maintainer: Andreas Schneider <schneiderconsultingpy@gmail.com>
Diff between concstats versions 0.1.0 dated 2022-05-05 and 0.1.2 dated 2022-05-14
DESCRIPTION | 6 +-- MD5 | 36 +++++++++---------- NEWS.md | 17 +++++++++ R/comp.R | 22 +++++------ R/concstats.R | 2 - R/inequ.R | 32 ++++++++--------- R/mstruct.R | 14 +++---- README.md | 4 -- inst/doc/concstats-intro.html | 4 +- inst/doc/concstats-start.Rmd | 6 +-- inst/doc/concstats-start.html | 6 +-- man/comp.Rd | 2 - man/inequ.Rd | 8 ++-- man/mstruct.Rd | 2 - tests/testthat/test-comp.R | 74 ++++++++++++++++------------------------ tests/testthat/test-concstats.R | 5 +- tests/testthat/test-inequ.R | 35 ++++++++++-------- tests/testthat/test-mstruct.R | 27 ++++++++------ vignettes/concstats-start.Rmd | 6 +-- 19 files changed, 160 insertions(+), 148 deletions(-)
Title: On Bayesian Analysis of Threshold Autoregressive Models
Description: Fit two-regime threshold autoregressive (TAR) models by Markov chain Monte Carlo methods.
Author: Cathy W. S. Chen, Edward M.H. Lin, F.C. Liu, and Richard
Gerlach
Maintainer: Edward M.H. Lin <ed.mhlin@gmail.com>
Diff between BAYSTAR versions 0.2-9 dated 2013-09-27 and 0.2-10 dated 2022-05-14
CHANGELOG | 9 ++++++--- DESCRIPTION | 17 ++++++++--------- MD5 | 6 +++--- NAMESPACE | 7 ++++++- 4 files changed, 23 insertions(+), 16 deletions(-)
Title: Spatial Objects of the Czech Republic
Description: Administrative regions and other spatial objects of the Czech Republic.
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.9.1 dated 2021-12-03 and 1.9.2 dated 2022-05-14
DESCRIPTION | 10 - MD5 | 28 +-- NEWS.md | 4 R/RCzechia.R | 2 R/republika.R | 2 R/sysdata.rda |binary build/vignette.rds |binary inst/doc/vignette.Rmd | 2 inst/doc/vignette.html | 290 ++++++++++++++++++++++++++++++++++---- man/RCzechia-package.Rd | 2 tests/testthat/test-1-kraje.R | 5 tests/testthat/test-1-okresy.R | 7 tests/testthat/test-1-republika.R | 4 tests/testthat/test-1-vodstvo.R | 4 vignettes/vignette.Rmd | 2 15 files changed, 308 insertions(+), 54 deletions(-)
Title: Tools to Create, Modify and Manage 'CWB' Corpora
Description: The 'Corpus Workbench' ('CWB', <https://cwb.sourceforge.io/>) offers a classic and mature
approach for working with large, linguistically and structurally annotated corpora. The 'CWB'
is memory efficient and its design makes running queries fast (Evert and Hardie 2011,
<http://www.stefan-evert.de/PUB/EvertHardie2011.pdf>). The 'cwbtools' package offers
pure R tools to create indexed corpus files as well as high-level wrappers for the original C
implementation of CWB as exposed by the 'RcppCWB' package
<https://CRAN.R-project.org/package=RcppCWB>. Additional functionality to add and
modify annotations of corpora from within R makes working with CWB indexed corpora
much more flexible and convenient. The 'cwbtools' package in combination with the R packages
'RcppCWB' (<https://CRAN.R-project.org/package=RcppCWB>) and 'polmineR'
(<https://CRAN.R-project.org/package=polmineR>) offers a lightweight infrastructure
to support the combination of quantitative and qualitative approaches for working
with textual data.
Author: Andreas Blaette [aut, cre],
Christoph Leonhardt [aut]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between cwbtools versions 0.3.4 dated 2021-06-11 and 0.3.5 dated 2022-05-14
DESCRIPTION | 20 - MD5 | 50 ++-- NAMESPACE | 11 NEWS.md | 27 ++ R/CorpusData.R | 2 R/corpus.R | 285 +++++++++++++++---------- R/cwbtools.R | 2 R/p_attribute.R | 93 ++++++++ R/pkg.R | 2 R/registry_file.R | 34 +-- R/s_attribute.R | 4 R/vrt.R | 1 R/zenodo.R |only build/vignette.rds |binary inst/CITATION | 7 inst/doc/opennlp.html | 201 +++++++++++++++++- inst/doc/sentences.html | 296 ++++++++++++++++++++++---- inst/doc/vignette.R | 7 inst/doc/vignette.Rmd | 9 inst/doc/vignette.html | 465 +++++++++++++++++++++++++++++++++--------- man/corpus_utils.Rd | 9 man/cwbtools-package.Rd | 2 man/p_attribute_encode.Rd | 28 ++ man/registry_file.Rd | 4 man/zenodo.Rd |only tests/testthat/test_install.R | 26 ++ vignettes/vignette.Rmd | 9 27 files changed, 1247 insertions(+), 347 deletions(-)
Title: Embedded JavaScript and WebAssembly Engine for R
Description: An R interface to V8: Google's open source JavaScript and WebAssembly
engine. This package can be compiled either with V8 version 6 and up or NodeJS
when built as a shared library.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between V8 versions 4.1.0 dated 2022-02-06 and 4.2.0 dated 2022-05-14
DESCRIPTION | 6 +- MD5 | 14 ++--- NEWS | 3 + build/partial.rdb |binary build/vignette.rds |binary configure | 27 ++++++---- inst/doc/npm.html | 70 ++++++++++++++++++++++------ inst/doc/v8_intro.html | 121 +++++++++++++++++++++++++++++++++++++------------ 8 files changed, 177 insertions(+), 64 deletions(-)
Title: Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH key parsers.
Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic
signatures can either be created and verified manually or via x509 certificates.
AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric
(public key) encryption or EC for Diffie Hellman. High-level envelope functions
combine RSA and AES for encrypting arbitrary sized data. Other utilities include key
generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random
number generator, and 'bignum' math methods for manually performing crypto
calculations on large multibyte integers.
Author: Jeroen Ooms [aut, cre] ,
Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between openssl versions 2.0.0 dated 2022-03-02 and 2.0.1 dated 2022-05-14
DESCRIPTION | 6 - MD5 | 22 +++--- NEWS | 3 build/vignette.rds |binary configure | 6 - inst/doc/bignum.html | 105 +++++++++++++++++++++---------- inst/doc/crypto_hashing.html | 31 ++++++--- inst/doc/keys.html | 124 +++++++++++++++++++++++-------------- inst/doc/secure_rng.html | 37 +++++++---- src/info.c | 8 ++ tests/testthat/test_keys_ed25519.R | 2 tests/testthat/test_ssl_ctx.R | 1 12 files changed, 228 insertions(+), 117 deletions(-)
Title: Navigation Menu for Pipe-Friendly Data Processing
Description: Provides a navigation menu to enable pipe-friendly data processing for hierarchical data structures.
By activating the menu items, you can perform operations on each item while maintaining the overall structure in attributes.
Author: Mizuki Uchida [aut, cre]
Maintainer: Mizuki Uchida <uchidamizuki@vivaldi.net>
Diff between navigatr versions 0.1.1 dated 2022-02-21 and 0.1.2 dated 2022-05-14
DESCRIPTION | 9 ++++---- LICENSE | 4 +-- MD5 | 27 +++++++++++++++----------- NAMESPACE | 9 ++++++++ NEWS.md | 7 ++++++ R/dplyr.R | 8 +++++++ R/item.R | 13 ------------ R/itemise.R |only R/menu.R | 6 +++++ R/rekey.R |only R/reky.R |only R/utils.R | 5 ++++ README.md | 44 +++++++++++++++++++++---------------------- man/itemise.Rd |only man/rekey.Rd | 45 +++++++++++++++++++++++++------------------- tests/testthat/test-dplyr.R |only tests/testthat/test-menu.R | 43 ++++++++++++++++++++++++++++++++++++++++++ 17 files changed, 149 insertions(+), 71 deletions(-)
Title: Educational Assessment Tools for Replication Methods
Description: Replication methods to compute some basic statistic operations (means, standard deviations,
frequency tables, percentiles and generalized linear models) in complex survey designs comprising multiple
imputed variables and/or a clustered sampling structure which both deserve special procedures at least in
estimating standard errors. See the package documentation for a more detailed description along with references.
Author: Sebastian Weirich [aut, cre],
Martin Hecht [aut],
Benjamin Becker [aut]
Maintainer: Sebastian Weirich <sebastian.weirich@iqb.hu-berlin.de>
Diff between eatRep versions 0.14.0 dated 2022-02-01 and 0.14.3 dated 2022-05-14
DESCRIPTION | 8 +- MD5 | 25 +++--- NEWS.md | 7 + R/2_doTrends.r | 2 R/bifie.r | 4 - R/jk2.R | 125 ++++++++++++++++------------------ R/report.r | 67 +++++++++++++++++- build/vignette.rds |binary inst/doc/eatRep.html | 7 - man/eatRep-package.rd | 6 - man/repMean.Rd | 2 man/repQuantile.Rd | 2 man/report.Rd | 16 +++- tests/testthat/test_trend_estimates.R |only 14 files changed, 176 insertions(+), 95 deletions(-)
Title: Read Spectrometric Data and Metadata
Description: Parse various reflectance/transmittance/absorbance spectra file
formats to extract spectral data and metadata, as described in Gruson, White
& Maia (2019) <doi:10.21105/joss.01857>. Among other formats, it can import
files from 'Avantes' <https://www.avantes.com/>, 'CRAIC'
<https://www.microspectra.com/>, and 'OceanInsight' (formerly 'OceanOptics')
<https://www.oceaninsight.com/> brands.
Author: Hugo Gruson [cre, aut, cph] ,
Rafael Maia [aut, cph] ,
Thomas White [aut, cph] ,
Kotya Karapetyan [ctb, cph] )
Maintainer: Hugo Gruson <hugo.gruson+R@normalesup.org>
Diff between lightr versions 1.6.1 dated 2021-11-08 and 1.7.0 dated 2022-05-14
DESCRIPTION | 6 MD5 | 41 +-- NAMESPACE | 1 NEWS.md | 17 + R/convert_tocsv.R | 10 R/dev_utils.R | 2 R/dispatch_parser.R | 1 R/get_metadata.R | 8 R/get_spec.R | 8 R/parse_avantes_binary.R | 6 README.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/batch_import.html | 279 +++++++++++++++++++++--- inst/doc/renormalise.html | 257 ++++++++++++++++++++-- inst/doc/true_example.html | 249 ++++++++++++++++++++- inst/testdata/eg.IRR8 |only inst/testdata_sources.txt | 1 man/lr_parse_trm.Rd | 3 tests/testthat/test_compare_photobiologyInOut.R | 3 tests/testthat/test_parsers.R | 5 22 files changed, 810 insertions(+), 92 deletions(-)
Title: Spatial Analysis on Network
Description: Perform spatial analysis on network.
Implement several methods for spatial analysis on network: Network Kernel Density estimation,
building of spatial matrices based on network distance ('listw' objects from 'spdep' package), K functions estimation
for point pattern analysis on network, k nearest neighbours on network, reachable area calculation, and graph generation
References: Okabe et al (2019) <doi:10.1080/13658810802475491>;
Okabe et al (2012, ISBN:978-0470770818);Baddeley et al (2015, ISBN:9781482210200).
Author: Jeremy Gelb [aut, cre] ,
Philippe Apparicio [ctb]
Maintainer: Jeremy Gelb <jeremy.gelb@ucs.inrs.ca>
Diff between spNetwork versions 0.4.3.1 dated 2022-04-23 and 0.4.3.2 dated 2022-05-14
DESCRIPTION | 13 +-- MD5 | 62 ++++++++------ NAMESPACE | 4 NEWS.md | 12 ++ R/RcppExports.R | 102 ++++++++++++------------ R/export_cpp_classes.R |only R/geometrical_functions_sf.R | 3 R/spatial_indexing_sf.R | 83 ++++++++++++------- README.md | 4 build/partial.rdb |binary inst/doc/Isochrones.html | 10 +- inst/doc/KNetworkFunctions.html | 16 +-- inst/doc/NKDE.html | 28 +++--- inst/doc/NetworkBuilding.html | 12 +- inst/doc/SpatialWeightMatrices.html | 4 inst/doc/TNKDE.html | 82 +++++++++---------- inst/extdata/results_vignette_kfunc.rda |binary inst/extdata/results_vignette_network_build.rda |binary inst/extdata/results_vignette_nkde.rda |binary inst/extdata/results_vignette_tnkde.rda |binary inst/extdata/results_vignette_wmat.rda |binary man/build_quadtree.Rd | 2 man/figures/unnamed-chunk-5-1.png |binary man/figures/unnamed-chunk-7-1.png |binary man/figures/unnamed-chunk-8-1.png |binary man/spNetwork-package.Rd |only man/spatial_index-cash-new.Rd |only man/spatial_index-cash-tree_request.Rd |only man/spatial_index.Rd |only man/st_bbox_by_feature.Rd |only src/RcppExports.cpp | 3 src/spatial_indexing.cpp |only src/spatial_indexing.h |only src/spatial_indexing_export.cpp |only tests/testthat/test_knn_sf.R | 4 tests/testthat/test_spatial_indexing.R |only vignettes/images/animated_map.gif |binary 37 files changed, 250 insertions(+), 194 deletions(-)
Title: Performance Attribution for Equity Portfolios
Description: It provides tools for conducting performance attribution for equity portfolios. The package uses two methods: the Brinson method and a regression-based analysis.
Author: Yang Lu [aut, cre],
David Kane [aut]
Maintainer: Yang Lu <yang.lu2014@gmail.com>
Diff between pa versions 1.2-1 dated 2013-12-21 and 1.2-2 dated 2022-05-14
.Rinstignore | 2 +- DESCRIPTION | 19 ++++++++----------- MD5 | 12 ++++++------ NAMESPACE | 3 ++- R/exposure.R | 2 +- build/vignette.rds |binary inst/doc/pa.pdf |binary man/pa-package.Rd | 16 ++++++++-------- 8 files changed, 26 insertions(+), 28 deletions(-)
Title: Friendly R Startup Configuration
Description: Adds support for R startup configuration via '.Renviron.d' and '.Rprofile.d' directories in addition to '.Renviron' and '.Rprofile' files. This makes it possible to keep private / secret environment variables separate from other environment variables. It also makes it easier to share specific startup settings by simply copying a file to a directory.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between startup versions 0.17.0 dated 2022-02-23 and 0.18.0 dated 2022-05-14
startup-0.17.0/startup/NEWS |only startup-0.18.0/startup/DESCRIPTION | 8 startup-0.18.0/startup/MD5 | 16 - startup-0.18.0/startup/NEWS.md |only startup-0.18.0/startup/R/files_apply.R | 217 +++++++++++++++++++-- startup-0.18.0/startup/README.md | 6 startup-0.18.0/startup/build/vignette.rds |binary startup-0.18.0/startup/inst/doc/startup-intro.html | 6 startup-0.18.0/startup/inst/doc/startup-intro.md | 6 startup-0.18.0/startup/vignettes/startup-intro.md | 6 10 files changed, 226 insertions(+), 39 deletions(-)
Title: The Distributed EM Algorithms in Multivariate Gaussian Mixture
Models
Description: The distributed expectation maximization algorithms are used to solve parameters of multivariate Gaussian mixture models. The philosophy of the package is described in Guo, G. (2022) <doi:10.1080/02664763.2022.2053949>.
Author: Qian Wang [aut, cre],
Guangbao Guo [aut],
Guoqi Qian [aut]
Maintainer: Qian Wang <waqian0715@163.com>
Diff between DEM versions 0.0.0.1 dated 2022-04-01 and 0.0.0.2 dated 2022-05-14
DESCRIPTION | 6 +++--- MD5 | 6 ++++-- NAMESPACE | 1 + R/EM.R |only man/EM.Rd |only 5 files changed, 8 insertions(+), 5 deletions(-)
Title: Truncated Positive Normal Model and Extensions
Description: Provide data generation and estimation tools for the truncated positive normal
model discussed in Gomez, Olmos, Varela and Bolfarine (2018) <doi:10.1007/s11766-018-3354-x>, the
slash truncated positive normal distribution discussed in Gomez, Gallardo and Santoro (2021)
<doi:10.3390/sym13112164>, the bimodal truncated positive normal distribution discussed in
Gomez et al. (2022) <doi:10.3390/sym14040665> and the flexible truncated positive normal model.
Author: Diego Gallardo [aut, cre],
Hector J. Gomez [aut],
Yolanda M. Gomez [aut]
Maintainer: Diego Gallardo <diego.gallardo@uda.cl>
Diff between tpn versions 1.2 dated 2022-04-01 and 1.3 dated 2022-05-14
tpn-1.2/tpn/R/choose.ftpn.R |only tpn-1.2/tpn/R/dftpn.R |only tpn-1.2/tpn/R/est.ftpn.R |only tpn-1.2/tpn/R/pftpn.R |only tpn-1.2/tpn/R/qftpn.R |only tpn-1.2/tpn/R/rftpn.R |only tpn-1.2/tpn/man/est.ftpn.Rd |only tpn-1.2/tpn/man/ftpn.Rd |only tpn-1.3/tpn/DESCRIPTION | 8 ++++---- tpn-1.3/tpn/INDEX | 2 +- tpn-1.3/tpn/MD5 | 37 +++++++++++++++++++------------------ tpn-1.3/tpn/NAMESPACE | 4 ++-- tpn-1.3/tpn/NEWS.md | 7 +++++++ tpn-1.3/tpn/R/choose.ftp.R |only tpn-1.3/tpn/R/dftp.R |only tpn-1.3/tpn/R/est.ftp.R |only tpn-1.3/tpn/R/pftp.R |only tpn-1.3/tpn/R/qftp.R |only tpn-1.3/tpn/R/rftp.R |only tpn-1.3/tpn/man/btpn.Rd | 15 +++++++++++++-- tpn-1.3/tpn/man/choose.ftp.Rd |only tpn-1.3/tpn/man/est.btpn.Rd | 16 ++++++++++------ tpn-1.3/tpn/man/est.ftp.Rd |only tpn-1.3/tpn/man/est.stpn.Rd | 13 +++++++------ tpn-1.3/tpn/man/est.tpn.Rd | 10 +++++----- tpn-1.3/tpn/man/ftp.Rd |only tpn-1.3/tpn/man/stpn.Rd | 7 +++++++ tpn-1.3/tpn/man/tpn.Rd | 7 +++++++ 28 files changed, 82 insertions(+), 44 deletions(-)
Title: Single Cell Cluster-Based Annotation Toolkit for Cellular
Heterogeneity
Description: An automatic cluster-based annotation pipeline based on evidence-based score by matching the marker genes with known cell markers in tissue-specific cell taxonomy reference database for single-cell RNA-seq data. See Shao X, et al (2020) <doi:10.1016/j.isci.2020.100882> for more details.
Author: Xin Shao
Maintainer: Xin Shao<xin_shao@zju.edu.cn>
Diff between scCATCH versions 3.0 dated 2022-01-07 and 3.1 dated 2022-05-14
DESCRIPTION | 6 - MD5 | 34 +++++----- R/methods.R | 5 - R/utils.R | 10 +-- README.md | 20 ++---- inst/doc/tutorial.html | 1 man/cellmatch.Rd | 38 +++++------ man/createscCATCH.Rd | 38 +++++------ man/demo_data.Rd | 40 ++++++------ man/demo_geneinfo.Rd | 40 ++++++------ man/demo_marker.Rd | 40 ++++++------ man/findcelltype-scCATCH-method.Rd | 38 +++++------ man/findcelltype.Rd | 38 +++++------ man/findmarkergene-scCATCH-method.Rd | 116 +++++++++++++++++------------------ man/findmarkergene.Rd | 116 +++++++++++++++++------------------ man/geneinfo.Rd | 38 +++++------ man/rev_gene.Rd | 46 ++++++------- man/scCATCH.Rd | 52 +++++++-------- 18 files changed, 358 insertions(+), 358 deletions(-)
Title: Spectral Data for Light-Emitting-Diodes
Description: Spectral emission data for some frequently used light emitting
diodes available as electronic components. Part of the 'r4photobiology'
suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Shafiuddin Ahmed [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyLEDs versions 0.4.3-1 dated 2018-01-14 and 0.5.0 dated 2022-05-14
photobiologyLEDs-0.4.3-1/photobiologyLEDs/NEWS |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/colors.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/generic.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/hewlett-packard.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/huey-jann.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/led-engin.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/lumitronix.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/marktech.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/nichia.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/norlux.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/on-load.R |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/osram.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/quantum-devices.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/roithner-laser.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/seti.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/shenzhen-weili.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/R/tao-yuan.r |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/hewlett_packard.Rd |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/huey_jann.Rd |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/led_engin.Rd |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/leds_global.Rd |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/lumitronix.Rd |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/marktech.Rd |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/nichia.Rd |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/norlux.Rd |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/osram.Rd |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/quantum_devices.Rd |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/roithner_laser.Rd |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/seti.Rd |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/tao_yuan.Rd |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/unknown.Rd |only photobiologyLEDs-0.4.3-1/photobiologyLEDs/man/uv_leds.Rd |only photobiologyLEDs-0.5.0/photobiologyLEDs/DESCRIPTION | 27 photobiologyLEDs-0.5.0/photobiologyLEDs/MD5 | 81 photobiologyLEDs-0.5.0/photobiologyLEDs/NAMESPACE | 6 photobiologyLEDs-0.5.0/photobiologyLEDs/NEWS.md |only photobiologyLEDs-0.5.0/photobiologyLEDs/R/cob-dimming-mspct.r |only photobiologyLEDs-0.5.0/photobiologyLEDs/R/cob-reflectors-mspct.r |only photobiologyLEDs-0.5.0/photobiologyLEDs/R/led_brands.r |only photobiologyLEDs-0.5.0/photobiologyLEDs/R/led_colors.r |only photobiologyLEDs-0.5.0/photobiologyLEDs/R/led_uses.r |only photobiologyLEDs-0.5.0/photobiologyLEDs/R/leds-mspct.r | 86 photobiologyLEDs-0.5.0/photobiologyLEDs/R/oo-maya-leds.r | 30 photobiologyLEDs-0.5.0/photobiologyLEDs/R/photobiologyLEDs.r | 113 photobiologyLEDs-0.5.0/photobiologyLEDs/README.md | 405 ++ photobiologyLEDs-0.5.0/photobiologyLEDs/build/partial.rdb |only photobiologyLEDs-0.5.0/photobiologyLEDs/build/vignette.rds |binary photobiologyLEDs-0.5.0/photobiologyLEDs/data/COB-dimming-mspct.rda |only photobiologyLEDs-0.5.0/photobiologyLEDs/data/COB-reflectors-mspct.rda |only photobiologyLEDs-0.5.0/photobiologyLEDs/data/leds-mspct.rda |binary photobiologyLEDs-0.5.0/photobiologyLEDs/inst/doc/r4p-introduction.Rmd |only photobiologyLEDs-0.5.0/photobiologyLEDs/inst/doc/r4p-introduction.html |only photobiologyLEDs-0.5.0/photobiologyLEDs/inst/doc/user-guide.R | 126 photobiologyLEDs-0.5.0/photobiologyLEDs/inst/doc/user-guide.Rmd | 140 - photobiologyLEDs-0.5.0/photobiologyLEDs/inst/doc/user-guide.html | 1384 ++++++---- photobiologyLEDs-0.5.0/photobiologyLEDs/man/COB_dimming.mspct.Rd |only photobiologyLEDs-0.5.0/photobiologyLEDs/man/COB_reflectors.mspct.Rd |only photobiologyLEDs-0.5.0/photobiologyLEDs/man/figures |only photobiologyLEDs-0.5.0/photobiologyLEDs/man/led_brands.Rd |only photobiologyLEDs-0.5.0/photobiologyLEDs/man/led_colors.Rd |only photobiologyLEDs-0.5.0/photobiologyLEDs/man/led_uses.Rd |only photobiologyLEDs-0.5.0/photobiologyLEDs/man/leds.mspct.Rd | 88 photobiologyLEDs-0.5.0/photobiologyLEDs/man/oo_maya_leds.Rd | 35 photobiologyLEDs-0.5.0/photobiologyLEDs/man/photobiologyLEDs-package.Rd | 125 photobiologyLEDs-0.5.0/photobiologyLEDs/vignettes/r4p-introduction.Rmd |only photobiologyLEDs-0.5.0/photobiologyLEDs/vignettes/user-guide.Rmd | 140 - 66 files changed, 1878 insertions(+), 908 deletions(-)
More information about photobiologyLEDs at CRAN
Permanent link
Title: Generate Open or Closed Interpolating Curves
Description: Functions for finding smooth interpolating curves connecting
a series of points in the plane. Curves may be open or closed,
that is, with the first and last point of the curve at the initial point.
Author: Bill Venables
Maintainer: Bill Venables <Bill.Venables@gmail.com>
Diff between frenchCurve versions 0.1.0 dated 2020-06-26 and 0.1.5 dated 2022-05-14
DESCRIPTION | 13 +--- MD5 | 11 ++- NAMESPACE | 6 + R/cspline.R | 141 +++++++++++++++++++++++++++++++++++++++++----- man/adjust_curve.Rd |only man/as_complex.Rd |only man/complexReplacement.Rd |only man/open_curve.Rd | 19 ++++-- 8 files changed, 160 insertions(+), 30 deletions(-)
Title: Exploration of Dental Surface Topography
Description: Tools for exploring the topography of 3d triangle meshes.
The functions were developed with dental surfaces in mind, but could be
applied to any triangle mesh of class 'mesh3d'. More specifically, 'doolkit'
allows to isolate the border of a mesh, or a subpart of the mesh using the
polygon networks method; crop a mesh; compute basic descriptors (elevation,
orientation, footprint area); compute slope, angularity and relief index
(Ungar and Williamson (2000) <https://palaeo-electronica.org/2000_1/gorilla/issue1_00.htm>;
Boyer (2008) <doi:10.1016/j.jhevol.2008.08.002>), inclination and occlusal
relief index or gamma (Guy et al. (2013) <doi:10.1371/journal.pone.0066142>),
OPC (Evans et al. (2007) <doi:10.1038/nature05433>), OPCR (Wilson et al.
(2012) <doi:10.1038/nature10880>), DNE (Bunn et al. (2011) <doi:10.1002/ajpa.21489>;
Pampush et al. (2016) <doi:10.1007/s10914-016-9326-0>), form factor (Horton
(1932) <doi:10.1029/TR013i001p00350>), basin elongation (Schum (1956)
<doi:10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2>), lemniscate ratio
(Chorley et al; (1957) <doi:10.2475/ajs.255.2.138>), enamel-dentine distance
(Guy et al. (2015) <doi:10.1371/journal.pone.0138802>; Thiery et al. (2017)
<doi:10.3389/fphys.2017.00524>), absolute crown strength (Schwartz et al.
(2020) <doi:10.1098/rsbl.2019.0671>), relief rate (Thiery et al. (2019)
<doi:10.1002/ajpa.23916>) and area-relative curvature; draw cumulative
profiles of a topographic variable; and map a variable over a 3d triangle
mesh.
Author: Ghislain Thiery [aut, cre],
Franck Guy [aut],
Vincent Lazzari [aut]
Maintainer: Ghislain Thiery <ghislain.thiery@ntymail.com>
Diff between doolkit versions 1.0.1 dated 2021-11-24 and 1.42.1 dated 2022-05-14
DESCRIPTION | 10 - MD5 | 66 ++++---- NAMESPACE | 56 +++---- R/doolkit.R | 2 R/topography.R | 44 +++-- R/utility.R | 47 +++--- build/partial.rdb |binary data/dkmodel.rda |binary data/dkpongo.rda |binary man/angularity.Rd | 92 ++++++------ man/arc.Rd | 98 ++++++------- man/area2d.Rd | 94 ++++++------ man/dkborder.Rd | 68 ++++----- man/dkcrop.Rd | 84 +++++------ man/dkmap.Rd | 322 +++++++++++++++++++++---------------------- man/dkmodel.Rd | 50 +++--- man/dkorigin.Rd | 50 +++--- man/dkpongo.Rd | 46 +++--- man/dkprofile.Rd | 130 ++++++++--------- man/dksetview.Rd | 50 +++--- man/dne.Rd | 84 +++++------ man/elev.Rd | 68 ++++----- man/hypso.Rd | 56 +++---- man/inclin.Rd | 64 ++++---- man/oedist.Rd | 106 +++++++------- man/opc.Rd | 84 +++++------ man/opcr.Rd | 74 +++++---- man/orient.Rd | 64 ++++---- man/poly.network.Rd | 178 +++++++++++------------ man/polygon.network-class.Rd | 46 +++--- man/rfi.Rd | 71 ++++----- man/rrate.Rd | 70 ++++----- man/shape.index.Rd | 98 ++++++------- man/slope.Rd | 64 ++++---- 34 files changed, 1223 insertions(+), 1213 deletions(-)
Title: Regression Analysis Linear and Nonlinear for Agriculture
Description: Linear and nonlinear regression analysis common in agricultural science articles (Archontoulis & Miguez (2015). <doi:10.2134/agronj2012.0506>). The package includes polynomial, exponential, gaussian, logistic, logarithmic, segmented, non-parametric models, among others. The functions return the model coefficients and their respective p values, coefficient of determination, root mean square error, AIC, BIC, as well as graphs with the equations automatically.
Author: Gabriel Danilo Shimizu [aut, cre]
,
Leandro Simoes Azeredo Goncalves [aut, ctb]
Maintainer: Gabriel Danilo Shimizu <shimizu@uel.br>
Diff between AgroReg versions 1.2.2 dated 2022-03-30 and 1.2.4 dated 2022-05-14
DESCRIPTION | 8 - MD5 | 191 +++++++++++++++++++++--------------------- NEWS.md | 10 +- R/AM_analysis.R | 6 - R/BC_analysis.R | 8 + R/BIEXP_analysis.R | 9 - R/CD_analysis.R | 8 + R/LL_analysis.R | 10 +- R/LM13_analysis.R | 6 - R/LM13i_analysis.R | 6 - R/LM23_analysis.R | 6 - R/LM23i_analysis.R | 6 - R/LM2i3_analysis.R | 6 - R/LM_analysis.R | 22 +++- R/LM_i_analysis.R | 12 +- R/LNplt_analysis.R | 4 R/LOG2_analysis.R | 6 - R/LOG_analysis.R | 6 - R/MM_analysis.R | 8 + R/PAGE_analysis.R | 6 - R/SH_function.R | 9 + R/VB_analysis.R | 6 - R/VG_analysis.R | 6 - R/asymptotic_analysis.R | 6 - R/asymptotic_i_analysis.R | 6 - R/asymptotic_i_sup_analysis.R | 6 - R/asymptotic_sup_analysis.R | 6 - R/beta_analysis.R | 6 - R/comparative_function.R | 4 R/gaussian_analysis.R | 6 - R/gompertz_analysis.R | 6 - R/hill_analysis.R | 8 - R/loess_analysis.R | 6 - R/logistic_analysis.R | 10 +- R/lorentz_analysis.R | 10 -- R/midilli_analysis.R | 10 +- R/midillim_analysis.R | 10 +- R/mitscherlich_analysis.R | 11 +- R/newton_analysis.R | 6 - R/peleg_analysis.R | 6 - R/plot_arrange.R | 21 +++- R/pltLN_analysis.R | 4 R/pltQD_analysis.R | 9 + R/potential_analysis.R | 6 - R/quadraticplateau_analysis.R | 4 R/regression.R | 128 ++++++++++++++-------------- R/stat_param.R | 6 - R/thompson_analysis.R | 6 - R/valcam_analysis.R | 6 - R/weibull_analysis.R | 8 + R/yieldloss_analysis.R | 6 - README.md |only man/AM.Rd | 3 man/BC.Rd | 3 man/CD.Rd | 3 man/GP.Rd | 3 man/LL.Rd | 3 man/LM.Rd | 3 man/LM13.Rd | 3 man/LM13i.Rd | 3 man/LM23.Rd | 3 man/LM23i.Rd | 3 man/LM2i3.Rd | 3 man/LM_i.Rd | 3 man/LOG.Rd | 3 man/LOG2.Rd | 3 man/MM.Rd | 3 man/PAGE.Rd | 3 man/SH.Rd | 3 man/VB.Rd | 3 man/VG.Rd | 3 man/asymptotic.Rd | 3 man/asymptotic_i.Rd | 3 man/asymptotic_ineg.Rd | 3 man/asymptotic_neg.Rd | 3 man/beta_reg.Rd | 3 man/biexponential.Rd | 3 man/gaussianreg.Rd | 3 man/hill.Rd | 3 man/linear.plateau.Rd | 3 man/loessreg.Rd | 3 man/logistic.Rd | 3 man/lorentz.Rd | 3 man/midilli.Rd | 5 - man/midillim.Rd | 5 - man/mitscherlich.Rd | 5 - man/newton.Rd | 3 man/peleg.Rd | 3 man/plateau.linear.Rd | 3 man/plateau.quadratic.Rd | 3 man/plot_arrange.Rd | 8 + man/potential.Rd | 3 man/quadratic.plateau.Rd | 3 man/thompson.Rd | 3 man/valcam.Rd | 3 man/weibull.Rd | 3 man/yieldloss.Rd | 3 97 files changed, 533 insertions(+), 305 deletions(-)