Title: Access Vegetation Databases and Treat Taxonomy
Description: Handling of vegetation data from different sources (
Turboveg 2.0 <https://www.synbiosys.alterra.nl/turboveg/>;
the German national repository <https://www.vegetweb.de> and others.
Taxonomic harmonization (given appropriate taxonomic lists,
e.g. the German taxonomic standard list "GermanSL", <https://germansl.infinitenature.org>).
Author: Florian Jansen <florian.jansen@uni-rostock.de>
Maintainer: Florian Jansen <florian.jansen@uni-rostock.de>
Diff between vegdata versions 0.9.10 dated 2022-01-09 and 0.9.11.3 dated 2022-06-17
vegdata-0.9.10/vegdata/data/lc.0.csv |only vegdata-0.9.10/vegdata/data/lc.1.csv |only vegdata-0.9.10/vegdata/data/lc.all.csv |only vegdata-0.9.10/vegdata/data/taxlevels.csv |only vegdata-0.9.11.3/vegdata/DESCRIPTION | 16 +++++------ vegdata-0.9.11.3/vegdata/MD5 | 34 ++++++++++++------------- vegdata-0.9.11.3/vegdata/R/cwm.r | 8 +---- vegdata-0.9.11.3/vegdata/R/syntab.r | 4 +- vegdata-0.9.11.3/vegdata/R/tax.child.r | 2 - vegdata-0.9.11.3/vegdata/R/taxval.r | 16 ++++++----- vegdata-0.9.11.3/vegdata/R/tv.site.R | 2 - vegdata-0.9.11.3/vegdata/build/vignette.rds |binary vegdata-0.9.11.3/vegdata/data/lc.0.csv.gz |only vegdata-0.9.11.3/vegdata/data/lc.1.csv.gz |only vegdata-0.9.11.3/vegdata/data/lc.all.csv.gz |only vegdata-0.9.11.3/vegdata/data/taxlevels.csv.gz |only vegdata-0.9.11.3/vegdata/inst/doc/vegdata.R | 18 ++++++++----- vegdata-0.9.11.3/vegdata/inst/doc/vegdata.Rnw | 26 +++++++++++-------- vegdata-0.9.11.3/vegdata/inst/doc/vegdata.pdf |binary vegdata-0.9.11.3/vegdata/man/cwm.Rd | 2 - vegdata-0.9.11.3/vegdata/man/tv.db.Rd | 2 - vegdata-0.9.11.3/vegdata/vignettes/vegdata.Rnw | 26 +++++++++++-------- 22 files changed, 84 insertions(+), 72 deletions(-)
Title: Stepwise Predictive Variable Selection for Random Forest
Description: An introduction to several novel predictive variable selection methods for random forest. They are based on various variable importance methods (i.e., averaged variable importance (AVI), and knowledge informed AVI (i.e., KIAVI, and KIAVI2)) and predictive accuracy in stepwise algorithms. For details of the variable selection methods, please see: Li, J., Siwabessy, J., Huang, Z. and Nichol, S. (2019) <doi:10.3390/geosciences9040180>. Li, J., Alvarez, B., Siwabessy, J., Tran, M., Huang, Z., Przeslawski, R., Radke, L., Howard, F., Nichol, S. (2017). <DOI: 10.13140/RG.2.2.27686.22085>.
Author: Jin Li [aut, cre]
Maintainer: Jin Li <jinli68@gmail.com>
Diff between steprf versions 1.0.0 dated 2021-11-08 and 1.0.1 dated 2022-06-17
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/RFcv2.R | 8 ++++++-- R/steprfAVI.R | 1 - R/steprfAVI1.R | 1 - R/steprfAVI2.R | 1 - man/RFcv2.Rd | 2 +- man/steprfAVI.Rd | 1 - man/steprfAVI1.Rd | 1 - man/steprfAVI2.Rd | 1 - 10 files changed, 20 insertions(+), 22 deletions(-)
Title: Classes and Methods for Spatio-Temporal Data
Description: Classes and methods for spatio-temporal data, including space-time regular lattices, sparse lattices, irregular data, and trajectories; utility functions for plotting data as map sequences (lattice or animation) or multiple time series; methods for spatial and temporal selection and subsetting, as well as for spatial/temporal/spatio-temporal matching or aggregation, retrieving coordinates, print, summary, etc.
Author: Edzer Pebesma [aut, cre] ,
Benedikt Graeler [ctb],
Tom Gottfried [ctb],
Robert J. Hijmans [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between spacetime versions 1.2-7 dated 2022-06-05 and 1.2-8 dated 2022-06-17
DESCRIPTION | 7 - MD5 | 46 +++---- inst/doc/jss816.R | 267 +++++++++++++++++++++++++++----------------- inst/doc/jss816.Rnw | 149 +++++++++++++++++------- inst/doc/jss816.pdf |binary inst/doc/stgvis.R | 2 inst/doc/stgvis.Rmd | 2 inst/doc/stgvis.html | 196 ++++++++++++++++---------------- inst/doc/sto.pdf |binary inst/doc/stpg.pdf |binary inst/doc/stsubs.pdf |binary man/nbmult.Rd | 2 man/stconstruct.Rd | 8 - tests/raster.R | 9 - tests/raster.Rout.save | 20 +-- tests/rw.R | 17 +- tests/rw.Rout.save | 36 +++-- tests/stconstruct.R | 10 - tests/stconstruct.Rout.save | 125 +++++++++++--------- tests/subsetting.Rout.save | 114 ++++++++++++------ tests/wind.R | 2 tests/wind.Rout.save | 13 +- vignettes/jss816.Rnw | 149 +++++++++++++++++------- vignettes/stgvis.Rmd | 2 24 files changed, 720 insertions(+), 456 deletions(-)
Title: Access Men's Basketball Play by Play Data
Description: A utility to quickly obtain clean and tidy men's
basketball play by play data. Provides functions to access
live play by play and box score data from ESPN<https://www.espn.com> with shot locations
when available. It is also a full NBA Stats API<https://www.nba.com/stats/> wrapper.
It is also a scraping and aggregating interface for Ken Pomeroy's
men's college basketball statistics website<https://kenpom.com>. It provides users with an
active subscription the capability to scrape the website tables and
analyze the data for themselves.
Author: Saiem Gilani [aut, cre],
Jason Lee [ctb],
Billy Fryer [ctb]
Maintainer: Saiem Gilani <saiem.gilani@gmail.com>
Diff between hoopR versions 1.5.0 dated 2021-11-10 and 1.8.0 dated 2022-06-17
DESCRIPTION | 48 MD5 | 291 ++-- NAMESPACE | 26 NEWS.md | 49 R/data.R | 4 R/espn_mbb_data.R | 1354 ++++++++++++++++++----- R/espn_mbb_wp.R |only R/espn_nba_data.R | 910 +++++++++++++-- R/espn_nba_wp.R |only R/kp_box_tables.R | 4 R/kp_historical_tables.R | 16 R/kp_misc_stats.R | 108 + R/kp_ratings_tables.R | 35 R/kp_team_tables.R | 18 R/mbb_pbp.R | 26 R/nba_data_pbp.R | 13 R/nba_pbp.R | 26 R/nba_stats_boxscore.R | 53 R/nba_stats_draft.R | 67 + R/nba_stats_pbp.R | 117 + R/nba_stats_player.R | 118 ++ R/nba_stats_scoreboard.R | 43 R/nbagl_pbp.R |only R/nbagl_players.R |only R/nbagl_schedule.R |only R/nbagl_standings.R |only R/ncaa_mbb_data.R | 5 R/utils.R | 55 R/utils_nba_stats.R | 21 README.md | 86 - man/check_status.Rd | 4 man/clean_team_names_NCAA_merge.Rd | 4 man/dhistory.Rd |only man/espn_mbb_betting.Rd | 6 man/espn_mbb_conferences.Rd | 4 man/espn_mbb_game_all.Rd | 4 man/espn_mbb_pbp.Rd | 4 man/espn_mbb_player_box.Rd | 4 man/espn_mbb_player_stats.Rd |only man/espn_mbb_rankings.Rd | 4 man/espn_mbb_scoreboard.Rd | 8 man/espn_mbb_standings.Rd | 4 man/espn_mbb_team_box.Rd | 4 man/espn_mbb_team_stats.Rd |only man/espn_mbb_teams.Rd | 4 man/espn_mbb_wp.Rd |only man/espn_nba_betting.Rd | 6 man/espn_nba_game_all.Rd | 4 man/espn_nba_pbp.Rd | 4 man/espn_nba_player_box.Rd | 4 man/espn_nba_player_stats.Rd |only man/espn_nba_scoreboard.Rd | 8 man/espn_nba_standings.Rd | 4 man/espn_nba_team_box.Rd | 4 man/espn_nba_team_stats.Rd |only man/espn_nba_teams.Rd | 4 man/espn_nba_wp.Rd |only man/game_rotation.Rd |only man/hoopR-package.Rd | 18 man/kp_arenas.Rd | 4 man/kp_box.Rd | 4 man/kp_coach_history.Rd | 4 man/kp_conf.Rd | 4 man/kp_confhistory.Rd | 4 man/kp_confstats.Rd | 4 man/kp_efficiency.Rd | 4 man/kp_fanmatch.Rd | 48 man/kp_foul_trouble.Rd | 4 man/kp_fourfactors.Rd | 4 man/kp_game_attrs.Rd | 4 man/kp_gameplan.Rd | 4 man/kp_hca.Rd | 4 man/kp_height.Rd | 4 man/kp_kpoy.Rd | 4 man/kp_minutes_matrix.Rd | 4 man/kp_officials.Rd | 4 man/kp_opptracker.Rd | 4 man/kp_player_career.Rd | 4 man/kp_playerstats.Rd | 4 man/kp_pointdist.Rd | 4 man/kp_pomeroy_archive_ratings.Rd | 4 man/kp_pomeroy_ratings.Rd | 4 man/kp_program_ratings.Rd | 4 man/kp_referee.Rd | 4 man/kp_team_depth_chart.Rd | 4 man/kp_team_history.Rd | 6 man/kp_team_lineups.Rd | 4 man/kp_team_player_stats.Rd | 4 man/kp_team_players.Rd | 4 man/kp_team_schedule.Rd | 4 man/kp_teamstats.Rd | 10 man/kp_trends.Rd | 4 man/kp_user_pw.Rd | 10 man/kp_winprob.Rd | 4 man/nba_stats_videoevents.Rd | 2 man/nba_teams.Rd | 56 man/nbagl_pbp.Rd |only man/nbagl_players.Rd |only man/nbagl_schedule.Rd |only man/nbagl_standings.Rd |only man/ncaa_mbb_NET_rankings.Rd | 4 man/p_headshot.Rd |only man/p_index.Rd |only man/pbp.Rd | 8 man/pbps.Rd |only man/progressively.Rd | 2 man/rejoin_schedules.Rd | 4 man/teams_links.Rd | 4 man/year_to_season.Rd | 4 tests/testthat/test-espn_mbb_pbp.R | 52 tests/testthat/test-espn_mbb_pbp_all.R | 143 +- tests/testthat/test-espn_mbb_player_box.R | 39 tests/testthat/test-espn_mbb_player_stats.R |only tests/testthat/test-espn_mbb_rankings.R | 2 tests/testthat/test-espn_mbb_scoreboard.R | 48 tests/testthat/test-espn_mbb_team_box.R | 52 tests/testthat/test-espn_mbb_team_stats.R |only tests/testthat/test-espn_mbb_teams.R | 14 tests/testthat/test-espn_mbb_wp.R |only tests/testthat/test-espn_nba_pbp.R | 56 tests/testthat/test-espn_nba_pbp_all.R | 149 ++ tests/testthat/test-espn_nba_player_box.R | 39 tests/testthat/test-espn_nba_player_stats.R |only tests/testthat/test-espn_nba_scoreboard.R | 48 tests/testthat/test-espn_nba_team_box.R | 54 tests/testthat/test-espn_nba_team_stats.R |only tests/testthat/test-espn_nba_teams.R | 18 tests/testthat/test-espn_nba_wp.R |only tests/testthat/test-kp_arenas.R | 1 tests/testthat/test-kp_box.R | 1 tests/testthat/test-kp_coach_history.R | 1 tests/testthat/test-kp_conf.R | 1 tests/testthat/test-kp_confstats.R | 1 tests/testthat/test-kp_efficiency.R | 1 tests/testthat/test-kp_fanmatch.R | 10 tests/testthat/test-kp_foul_trouble.R | 1 tests/testthat/test-kp_fourfactors.R | 1 tests/testthat/test-kp_game_attrs.R | 1 tests/testthat/test-kp_gameplan.R | 1 tests/testthat/test-kp_hca.R | 1 tests/testthat/test-kp_height.R | 1 tests/testthat/test-kp_kpoy.R | 1 tests/testthat/test-kp_minutes_matrix.R | 1 tests/testthat/test-kp_officials.R | 1 tests/testthat/test-kp_opptracker.R | 1 tests/testthat/test-kp_player_career.R | 1 tests/testthat/test-kp_playerstats.R | 1 tests/testthat/test-kp_pointdist.R | 1 tests/testthat/test-kp_pomeroy_archive_ratings.R | 1 tests/testthat/test-kp_program_ratings.R | 1 tests/testthat/test-kp_referee.R | 3 tests/testthat/test-kp_team_depth_chart.R | 1 tests/testthat/test-kp_team_history.R | 1 tests/testthat/test-kp_team_lineups.R | 1 tests/testthat/test-kp_team_player_stats.R | 1 tests/testthat/test-kp_team_players.R | 1 tests/testthat/test-kp_team_schedule.R | 6 tests/testthat/test-kp_teamstats.R | 9 tests/testthat/test-kp_trends.R | 1 tests/testthat/test-kp_winprob.R | 1 160 files changed, 3583 insertions(+), 1072 deletions(-)
Title: 'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME
Models
Description: At Novartis, we aimed at standardizing the set of diagnostic plots used for modeling
activities in order to reduce the overall effort required for generating such plots.
For this, we developed a guidance that proposes an adequate set of diagnostics and a toolbox,
called 'ggPMX' to execute them. 'ggPMX' is a toolbox that can generate all diagnostic plots at a quality sufficient
for publication and submissions using few lines of code. This package focuses on plots recommended by ISoP
<doi:10.1002/psp4.12161>. While not required, you can get/install the 'R' 'lixoftConnectors'
package in the 'Monolix' installation, as described at the following url
<https://monolix.lixoft.com/monolix-api/lixoftconnectors_installation/>.
When 'lixoftConnectors' is available, 'R' can use 'Monolix' directly to create the required
Chart Data instead of exporting it from the 'Monolix' gui.
Author: Amine Gassem [aut],
Bruno Bieth [aut],
Irina Baltcheva [aut],
Thomas Dumortier [aut],
Christian Bartels [aut],
Souvik Bhattacharya [aut],
Inga Ludwig [aut],
Ines Paule [aut],
Didier Renard [aut],
Matthew Fidler [aut, cre] ,
Seid Hamzic [aut],
Benjami [...truncated...]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between ggPMX versions 1.2.7 dated 2022-06-09 and 1.2.8 dated 2022-06-17
DESCRIPTION | 6 - MD5 | 48 ++++++------- NEWS.md | 11 +++ R/config.R | 2 R/plot-individual.R | 30 ++++---- R/plot-residual.R | 6 - R/plot-vpc.R | 2 R/pmx-reader.R | 4 - R/pmxClass.R | 6 - R/utils.R | 13 +-- README.md | 91 ++++++++----------------- inst/doc/ggPMX-guide.pdf |binary man/figures/README-illustrate_diagnostic-3.png |binary man/figures/README-unnamed-chunk-26-1.png |binary man/figures/README-unnamed-chunk-27-1.png |binary man/figures/README-unnamed-chunk-28-1.png |binary man/figures/README-unnamed-chunk-29-1.png |binary man/figures/README-unnamed-chunk-30-1.png |binary man/pmx_config.Rd | 4 - man/pmx_vpc_bin.Rd | 2 man/read_mlx_ind_est.Rd | 2 man/read_mlx_pred.Rd | 2 man/residual.Rd | 2 tests/testthat/test-nonmem_reader.R | 48 ++++++------- tests/testthat/test-utils.R | 34 +++++++-- 25 files changed, 160 insertions(+), 153 deletions(-)
Title: Flexible Parametric Survival and Multi-State Models
Description: Flexible parametric models for time-to-event data,
including the Royston-Parmar spline model, generalized gamma and
generalized F distributions. Any user-defined parametric
distribution can be fitted, given at least an R function defining
the probability density or hazard. There are also tools for
fitting and predicting from fully parametric multi-state models,
based on either cause-specific hazards or mixture models.
Author: Christopher Jackson [aut, cre],
Paul Metcalfe [ctb],
Jordan Amdahl [ctb],
Matthew T. Warkentin [ctb],
Michael Sweeting [ctb],
Kevin Kunzmann [ctb]
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Diff between flexsurv versions 2.1 dated 2021-09-13 and 2.2 dated 2022-06-17
DESCRIPTION | 19 MD5 | 232 ++-- NAMESPACE | 517 +++++----- R/Exp.R | 2 R/Gamma.R | 10 R/GenF.R | 15 R/GenGamma.R | 15 R/Llogis.R | 294 +++-- R/Lnorm.R | 5 R/Weibull.R | 11 R/WeibullPH.R | 196 ++- R/ajfit.R | 182 +-- R/broom-funs.R | 477 ++++----- R/custom.R | 346 +++--- R/flexsurvmix.R | 1794 ++++++++++++++++++------------------ R/flexsurvreg.R | 27 R/flexsurvrtrunc.R | 2 R/fracpoly.R | 94 - R/hr_flexsurvreg.R |only R/mstate.R | 16 R/pexp.R |only R/plot.flexsurvreg.R | 427 ++++---- R/predict.flexsurvreg.R | 153 ++- R/residuals.flexsurvreg.R | 139 ++ R/spline.R | 1569 +++++++++++++++---------------- R/standsurv.R |only R/summary.flexsurvreg.R | 1147 ++++++++++++++--------- R/survrtrunc.R | 2 R/survsplinek.R | 32 R/utils.R | 678 +++++++------ build/partial.rdb |only build/vignette.rds |binary inst/NEWS | 42 inst/doc/distributions.pdf |binary inst/doc/flexsurv-examples.R | 52 - inst/doc/flexsurv-examples.pdf |binary inst/doc/flexsurv.pdf |binary inst/doc/multistate.pdf |binary inst/doc/standsurv.R |only inst/doc/standsurv.Rmd |only inst/doc/standsurv.html |only man/GenF.Rd | 260 ++--- man/GenF.orig.Rd | 200 ++-- man/GenGamma.Rd | 252 ++--- man/GenGamma.orig.Rd | 228 ++-- man/Gompertz.Rd | 192 +-- man/Llogis.Rd | 179 +-- man/Survspline.Rd | 406 ++++---- man/Survsplinek.Rd | 1882 ++++++++++++++++++-------------------- man/WeibullPH.Rd | 157 +-- man/ajfit.Rd | 90 - man/ajfit_flexsurvmix.Rd | 64 - man/ajfit_fmsm.Rd | 72 - man/augment.flexsurvreg.Rd | 94 - man/basis.Rd | 98 - man/bc.Rd | 82 - man/bootci.fmsm.Rd | 134 +- man/bos.Rd | 112 +- man/coef.flexsurvreg.Rd | 80 - man/coxsnell_flexsurvreg.Rd |only man/dot-hess_to_cov.Rd | 42 man/dot-hessian.Rd | 58 - man/flexsurv-package.Rd | 180 +-- man/flexsurvmix.Rd | 538 +++++----- man/flexsurvreg.Rd | 948 +++++++++---------- man/flexsurvrtrunc.Rd | 386 +++---- man/flexsurvspline.Rd | 522 +++++----- man/fmixmsm.Rd | 50 - man/fmsm.Rd | 58 - man/get_basepars.Rd | 36 man/glance.flexsurvreg.Rd | 68 - man/hazard.Rd | 140 +- man/hr_flexsurvreg.Rd |only man/lines.flexsurvreg.Rd | 166 +-- man/mean_flexsurvmix.Rd | 58 - man/meanfinal_fmixmsm.Rd | 74 - man/means.Rd | 247 ++-- man/model.frame.flexsurvreg.Rd | 96 - man/msfit.flexsurvreg.Rd | 340 +++--- man/nobs.flexsurvreg.Rd | 66 - man/normboot.flexsurvreg.Rd | 157 +-- man/p_flexsurvmix.Rd | 86 - man/pars.fmsm.Rd | 82 - man/pdf_flexsurvmix.Rd | 52 - man/pfinal_fmsm.Rd | 98 - man/plot.flexsurvreg.Rd | 296 ++--- man/plot.standsurv.Rd |only man/plot_survtrunc.Rd | 38 man/pmatrix.fs.Rd | 270 ++--- man/pmatrix.simfs.Rd | 248 ++--- man/ppath_fmixmsm.Rd | 64 - man/predict.flexsurvreg.Rd | 12 man/probs_flexsurvmix.Rd | 56 - man/qfinal_fmixmsm.Rd | 100 +- man/qgeneric.Rd | 130 +- man/quantile_flexsurvmix.Rd | 56 - man/reexports.Rd | 36 man/residuals.flexsurvreg.Rd | 71 - man/rmst_flexsurvmix.Rd | 64 - man/rmst_generic.Rd | 112 +- man/sim.fmsm.Rd | 218 ++-- man/simfinal_fmsm.Rd | 120 +- man/simfs_bytrans.Rd | 34 man/simt_flexsurvmix.Rd | 56 - man/standsurv.Rd |only man/summary.flexsurvreg.Rd | 350 +++---- man/summary.flexsurvrtrunc.Rd | 142 +- man/survrtrunc.Rd | 242 ++-- man/tidy.flexsurvreg.Rd | 112 +- man/tidy.standsurv.Rd |only man/totlos.fs.Rd | 288 ++--- man/totlos.simfs.Rd | 246 ++-- man/unroll.function.Rd | 164 +-- tests/testthat/test-broom.R |only tests/testthat/test_flexsurvreg.R | 13 tests/testthat/test_mstate.R | 309 +++--- tests/testthat/test_outputs.R | 267 +++-- tests/testthat/test_predict.R |only tests/testthat/test_residuals.R |only tests/testthat/test_spline.R | 506 +++++----- tests/testthat/test_splinedist.R | 324 +++--- tests/testthat/test_standsurv.R |only tests/testthat/test_utils.R | 143 +- vignettes/flexsurv-examples.Rnw | 552 +++++------ vignettes/standsurv.Rmd |only vignettes/standsurv.bib |only 126 files changed, 11993 insertions(+), 11271 deletions(-)
Title: Bayesian Data Reconciliation of Separation Processes
Description: Bayesian tools that can be used to reconcile, or mass balance, mass flow rate data collected from chemical or particulate separation processes aided by constraints governed by the conservation of mass.
Functions included in the package aid the user in organizing and constraining data, using Markov chain Monte Carlo methods to obtain samples from Bayesian models, and in computation of the marginal likelihood of the data, given a particular model, for model selection. Marginal likelihood is approximated by methods in Chib S (1995) <doi:10.2307/2291521>.
Author: Scott Koermer <skoermer@vt.edu>
Maintainer: Scott Koermer <skoermer@vt.edu>
Diff between BayesMassBal versions 1.0.0 dated 2020-11-09 and 1.1.0 dated 2022-06-17
DESCRIPTION | 9 MD5 | 22 - NEWS.md | 7 R/plot_BayesMassBal.R | 7 R/ssEst.R | 266 +++++++++++------------ README.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Two_Node_Process.html | 465 +++++++++++++++++++++-------------------- inst/doc/ssEst.html | 178 ++++++++------- man/plot.BayesMassBal.Rd | 3 man/ssEst.Rd | 10 12 files changed, 499 insertions(+), 472 deletions(-)
Title: An Implementation of Ordinal Pattern Analysis
Description: Quantifies hypothesis to data fit for repeated measures
and longitudinal data, as described by Thorngate (1987)
<doi:10.1016/S0166-4115(08)60083-7> and Grice et al., (2015)
<doi:10.1177/2158244015604192>. Hypothesis and data are encoded as
pairwise relative orderings which are then compared to determine the
percentage of orderings in the data that are matched by the hypothesis.
Author: Timothy Beechey [aut, cre]
Maintainer: Timothy Beechey <tim.beechey@protonmail.com>
Diff between opa versions 0.3.6 dated 2022-04-05 and 0.4.1 dated 2022-06-17
DESCRIPTION | 8 - MD5 | 22 ++-- NAMESPACE | 3 R/calculate_pccs.R | 27 ----- R/condition_comparison.R |only R/fitopa.R | 9 - R/utility.R | 4 README.md | 168 ++++++++++++++-------------------- man/compare_conditions.Rd |only man/figures/README-plot_opamod1-1.png |binary man/figures/README-plot_opamod2-1.png |binary man/group_results.Rd | 6 - man/individual_results.Rd | 6 - 13 files changed, 95 insertions(+), 158 deletions(-)
Title: Tools for Mapping of Quantitative Traits of Genetically Related
Individuals and Calculating Identity Coefficients from
Pedigrees
Description: This software provides tools for quantitative trait mapping in populations such as advanced intercross lines where relatedness among individuals should not be ignored. It can estimate background genetic variance components, impute missing genotypes, simulate genotypes, perform a genome scan for putative quantitative trait loci (QTL), and plot mapping results. It also has functions to calculate identity coefficients from pedigrees, especially suitable for pedigrees that consist of a large number of generations, or estimate identity coefficients from genotypic data in certain circumstances.
Author: Riyan Cheng [aut, cre]
Maintainer: Riyan Cheng <riyancheng@hotmail.com>
Diff between QTLRel versions 1.9 dated 2022-03-09 and 1.11 dated 2022-06-17
ChangeLog | 3 + DESCRIPTION | 8 +-- MD5 | 28 +++++----- R/aic.R | 4 - R/estVC.R | 2 R/idcoef.R | 8 +-- R/qqPlot.R | 33 ++---------- inst/doc/QTLRel_Tutorial.R | 2 inst/doc/QTLRel_Tutorial.pdf |binary man/aicVC.Rd | 2 man/estVC.Rd | 2 man/scanOne.Rd | 2 src/QTLRelR.h | 2 src/init.c | 12 ++-- src/ks.c | 113 +++++++++++++++++++++++++++---------------- 15 files changed, 121 insertions(+), 100 deletions(-)
Title: Lab for Developing and Testing Recommender Algorithms
Description: Provides a research infrastructure to develop and evaluate
collaborative filtering recommender algorithms. This includes a sparse
representation for user-item matrices, many popular algorithms, top-N recommendations,
and cross-validation. Hahsler (2022) <doi:10.48550/arXiv.2205.12371>.
Author: Michael Hahsler [aut, cre, cph]
,
Bregt Vereet [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between recommenderlab versions 1.0.0 dated 2022-05-27 and 1.0.1 dated 2022-06-17
DESCRIPTION | 8 - MD5 | 50 +++---- NEWS.md | 7 R/RECOM_IBCF.R | 167 +++++++++++++---------- R/RECOM_LIBMF.R | 87 ++++++++---- R/RECOM_UBCF.R | 256 ++++++++++++++++++++++-------------- R/dissimilarity.R | 73 +++++++--- R/sparseNAMatrix.R | 11 - README.md | 15 -- data/Jester5k.rda |binary data/MSWeb.rda |binary data/MovieLense.rda |binary inst/README_files/TNR_vs_TPR-1.png |binary inst/doc/recommenderlab.R | 70 ++++----- inst/doc/recommenderlab.Rnw | 117 +++++++++------- inst/doc/recommenderlab.pdf |binary man/dissimilarity.Rd | 20 +- man/figures/logo.svg | 2 man/sparseNAMatrix.Rd | 13 - tests/testthat/test-RECOM_UBCF.R | 7 tests/testthat/test-dissimilarity.R | 97 ++++++++----- tests/testthat/test-dropNA.R | 18 +- tests/testthat/test-eval.R | 26 ++- tests/testthat/test-matrix.R | 32 ++-- tests/testthat/test-recom.R | 76 +++++++--- vignettes/recommenderlab.Rnw | 117 +++++++++------- 26 files changed, 777 insertions(+), 492 deletions(-)
More information about recommenderlab at CRAN
Permanent link
Title: Risk Tool Library - Trading, Risk, 'Analytics' for Commodities
Description: A toolkit for Commodities 'analytics', risk management and
trading professionals. Includes functions for API calls to
'Morningstar Commodities' and 'Genscape'.
Author: Philippe Cote [aut, cre],
Nima Safaian [aut]
Maintainer: Philippe Cote <pcote@ualberta.ca>
Diff between RTL versions 1.1.0 dated 2022-05-18 and 1.2.0 dated 2022-06-17
DESCRIPTION | 10 +++---- MD5 | 58 ++++++++++++++++++++++--------------------- NAMESPACE | 2 + NEWS.md | 21 +++++++++++++++ R/efficientFrontier.R |only R/simGBM.R | 2 - R/simMultivariates.R |only R/simOU.R | 20 +++++++++++--- R/simOUJ.R | 2 - R/simOUt.R | 2 - data/crudeassaysBP.rda |binary data/dflong.rda |binary data/dfwide.rda |binary data/eiaStocks.rda |binary data/eurodollar.rda |binary data/fizdiffs.rda |binary data/fxfwd.rda |binary data/planets.rda |binary data/spot2futConvergence.rda |binary data/spot2futCurve.rda |binary data/spy.rda |binary data/tsQuotes.rda |binary data/usSwapCurves.rda |binary data/usSwapCurvesPar.rda |binary data/wtiSwap.rda |binary inst/WORDLIST | 5 ++- man/efficientFrontier.Rd |only man/simGBM.Rd | 2 - man/simMultivariates.Rd |only man/simOU.Rd | 22 ++++++++++++++-- man/simOUJ.Rd | 2 - man/simOUt.Rd | 2 - 32 files changed, 104 insertions(+), 46 deletions(-)
Title: Interpreting Time Series and Autocorrelated Data Using GAMMs
Description: GAMM (Generalized Additive Mixed Modeling; Lin & Zhang, 1999)
as implemented in the R package 'mgcv' (Wood, S.N., 2006; 2011) is a nonlinear
regression analysis which is particularly useful for time course data such as
EEG, pupil dilation, gaze data (eye tracking), and articulography recordings,
but also for behavioral data such as reaction times and response data. As time
course measures are sensitive to autocorrelation problems, GAMMs implements
methods to reduce the autocorrelation problems. This package includes functions
for the evaluation of GAMM models (e.g., model comparisons, determining regions
of significance, inspection of autocorrelational structure in residuals)
and interpreting of GAMMs (e.g., visualization of complex interactions, and
contrasts).
Author: Jacolien van Rij [aut, cre],
Martijn Wieling [aut],
R. Harald Baayen [aut],
Hedderik van Rijn [ctb]
Maintainer: Jacolien van Rij <vanrij.jacolien@gmail.com>
Diff between itsadug versions 2.4 dated 2020-04-29 and 2.4.1 dated 2022-06-17
DESCRIPTION | 10 - MD5 | 38 +-- R/acf.R | 116 ++++++++--- R/inspect.R | 12 - R/predict.R | 38 +-- R/test.R | 25 +- build/vignette.rds |binary inst/NEWS | 6 inst/doc/acf.html | 397 ++++++++++++++++++++++++---------------- inst/doc/inspect.html | 482 ++++++++++++++++++++++++++++--------------------- inst/doc/overview.html | 283 +++++++++++++++++----------- inst/doc/test.html | 369 +++++++++++++++++++++++-------------- man/compareML.Rd | 2 man/fvisgam.Rd | 2 man/get_difference.Rd | 2 man/get_predictions.Rd | 2 man/plot_diff.Rd | 2 man/plot_diff2.Rd | 2 man/plot_smooth.Rd | 2 man/start_event.Rd | 11 - 20 files changed, 1099 insertions(+), 702 deletions(-)
Title: Modifying Rules on a DataBase
Description: Apply modification rules from R package 'dcmodify' to the database,
prescribing and documenting deterministic data cleaning steps on records in a database.
The rules are translated into SQL statements using R package 'dbplyr'.
Author: Edwin de Jonge [aut, cre] ,
Wytze Gelderloos [ctb]
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between dcmodifydb versions 0.2.0 dated 2022-01-21 and 0.3.1 dated 2022-06-17
dcmodifydb-0.2.0/dcmodifydb/R/update.R |only dcmodifydb-0.3.1/dcmodifydb/DESCRIPTION | 23 +- dcmodifydb-0.3.1/dcmodifydb/MD5 | 96 ++++++++-- dcmodifydb-0.3.1/dcmodifydb/NAMESPACE | 1 dcmodifydb-0.3.1/dcmodifydb/NEWS.md |only dcmodifydb-0.3.1/dcmodifydb/R/alter_stmt.R |only dcmodifydb-0.3.1/dcmodifydb/R/data.R |only dcmodifydb-0.3.1/dcmodifydb/R/dump_sql.R |only dcmodifydb-0.3.1/dcmodifydb/R/get_table_con.R |only dcmodifydb-0.3.1/dcmodifydb/R/is_working.R | 75 ++++++- dcmodifydb-0.3.1/dcmodifydb/R/modifier_to_sql.R |only dcmodifydb-0.3.1/dcmodifydb/R/modify.R | 37 +++ dcmodifydb-0.3.1/dcmodifydb/R/select.R | 62 +++--- dcmodifydb-0.3.1/dcmodifydb/R/update_stmt.R |only dcmodifydb-0.3.1/dcmodifydb/R/utils.R | 10 + dcmodifydb-0.3.1/dcmodifydb/build |only dcmodifydb-0.3.1/dcmodifydb/data |only dcmodifydb-0.3.1/dcmodifydb/inst |only dcmodifydb-0.3.1/dcmodifydb/man/dcmodifydb-package.Rd | 9 dcmodifydb-0.3.1/dcmodifydb/man/dump_sql.Rd | 31 ++- dcmodifydb-0.3.1/dcmodifydb/man/get_table_con.Rd | 2 dcmodifydb-0.3.1/dcmodifydb/man/is_working_db.Rd | 34 +++ dcmodifydb-0.3.1/dcmodifydb/man/modifier_to_sql.Rd | 11 - dcmodifydb-0.3.1/dcmodifydb/man/modify-ANY-modifier-method.Rd | 27 ++ dcmodifydb-0.3.1/dcmodifydb/man/person.Rd |only dcmodifydb-0.3.1/dcmodifydb/tests/integration_tests |only dcmodifydb-0.3.1/dcmodifydb/tests/testthat/_snaps |only dcmodifydb-0.3.1/dcmodifydb/tests/testthat/dump.sql | 10 - dcmodifydb-0.3.1/dcmodifydb/tests/testthat/test-compute.R |only dcmodifydb-0.3.1/dcmodifydb/tests/testthat/test-duckdb.R |only dcmodifydb-0.3.1/dcmodifydb/tests/testthat/test-is_working.R | 14 - dcmodifydb-0.3.1/dcmodifydb/tests/testthat/test-modify.R | 34 +++ dcmodifydb-0.3.1/dcmodifydb/tests/testthat/test-mssql.R |only dcmodifydb-0.3.1/dcmodifydb/tests/testthat/test-parse.R | 6 dcmodifydb-0.3.1/dcmodifydb/tests/testthat/test-schema.R |only dcmodifydb-0.3.1/dcmodifydb/tests/testthat/test-sql.R | 4 dcmodifydb-0.3.1/dcmodifydb/tests/testthat/test-update.R | 4 dcmodifydb-0.3.1/dcmodifydb/vignettes |only 38 files changed, 367 insertions(+), 123 deletions(-)
Title: Customer Intelligence Tool for Rapid Understandable Segmentation
Description: A tool to easily run and visualise supervised and unsupervised state of the art customer segmentation.
It is built like a pipeline covering the 3 main steps in a segmentation project: pre-processing, modelling, and plotting.
Users can either run the pipeline as a whole, or choose to run any one of the three individual steps.
It is equipped with a supervised option (tree optimisation) and an unsupervised option (k-clustering) as default models.
Author: Dom Clarke [aut, cre],
Cinzia Braglia [aut],
Oskar Nummedal [aut],
Leo McCarthy [aut],
Rebekah Yates [aut],
Stuart Davie [aut],
Joash Alonso [aut],
PEAK AI LIMITED [cph]
Maintainer: Dom Clarke <dom.clarke@peak.ai>
Diff between citrus versions 1.0.1 dated 2021-11-17 and 1.0.2 dated 2022-06-17
DESCRIPTION | 21 ++- MD5 | 32 +++-- NAMESPACE | 8 + R/model_management.R | 5 R/output_table.R | 30 ++--- R/plotting.R | 2 R/preprocess.R | 2 R/segment.R | 37 +++--- R/tree_segment.R | 198 +++++++++++++++++++++++++++++++++++-- R/unsupervised_segment.R | 9 - man/rpart.lists.Rd |only man/rpart.plot_pretty.Rd | 2 man/rpart.rules.Rd |only man/rpart.rules.table.Rd |only man/rpart.subrules.table.Rd |only man/tree_abstract.Rd | 7 - man/tree_segment.Rd | 3 tests/testthat/test_output_table.R | 2 tests/testthat/test_segment.R | 67 ++++++++++++ 19 files changed, 343 insertions(+), 82 deletions(-)
Title: Efficient Model Functions for Bagging
Description: Tree- and rule-based models can be bagged
(<doi:10.1007/BF00058655>) using this package and their predictions
equations are stored in an efficient format to reduce the model
objects size and speed.
Author: Max Kuhn [aut, cre] ,
RStudio [cph, fnd]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between baguette versions 0.2.0 dated 2022-03-09 and 1.0.0 dated 2022-06-17
DESCRIPTION | 40 +++++++++++++++----------------- MD5 | 39 +++++++++++++++++-------------- NAMESPACE | 2 - NEWS.md | 4 +++ R/C5.0.R | 17 ++++++++++++- R/aaa.R | 2 - R/bagger.R | 18 ++++++++------ R/bridge.R | 20 +++++++++++++++- R/cart.R | 17 ++++++++++++- R/mars.R | 17 ++++++++++++- R/reexports.R | 2 + README.md | 6 +--- inst/WORDLIST | 3 ++ man/bagger.Rd | 6 ++++ man/baguette-package.Rd |only tests/testthat/_snaps |only tests/testthat/helper-baguette.R |only tests/testthat/test-C5.R | 31 +++++++++++++++++-------- tests/testthat/test-cart.R | 48 +++++++++++++++++---------------------- tests/testthat/test-interfaces.R | 7 ----- tests/testthat/test-mars.R | 31 ++++++++++++++++--------- tests/testthat/test-validation.R | 18 +------------- 22 files changed, 198 insertions(+), 130 deletions(-)
Title: Missing Plot in RBD
Description: A system for Analysis of RBD when there is one missing observation. Methods for this process is described in A.M.Gun,M.K.Gupta,B.Dasgupta(2019,ISBN:81-87567-81-3).
Author: Arnab Roy [aut, cre],
Debarghya Baul [aut]
Maintainer: Arnab Roy <arnabroy7640@gmail.com>
Diff between MissingPlotRBD versions 0.1.0 dated 2022-06-15 and 1.1.0 dated 2022-06-17
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/MISSINGPLOT.R | 11 ++++++----- man/Missing.RBD.Rd | 4 ++-- 4 files changed, 14 insertions(+), 13 deletions(-)
More information about MissingPlotRBD at CRAN
Permanent link
Title: Functional Data Analysis and Partial Differential Equations
(PDE); Statistical Analysis of Functional and Spatial Data,
Based on Regression with PDE Regularization
Description: An implementation of regression models with partial differential regularizations, making use of the Finite Element Method. The models efficiently handle data distributed over irregularly shaped domains and can comply with various conditions at the boundaries of the domain. A priori information about the spatial structure of the phenomenon under study can be incorporated in the model via the differential regularization. See Sangalli, L. M. (2021). Spatial Regression With Partial Differential Equation Regularisation. International Statistical Review, 89(3), 505-531. for an overview.
Author: Eleonora Arnone [aut, cre],
Laura M. Sangalli [aut],
Eardi Lila [aut],
Jim Ramsay [aut],
Luca Formaggia [aut],
Giovanni Ardenghi [ctb],
Aldo Clemente [ctb],
Alessandra Colli [ctb],
Alberto Colombo [ctb],
Luca Colombo [ctb],
Carlo de Falco [ctb],
Enri [...truncated...]
Maintainer: Eleonora Arnone <eleonora.arnone@polimi.it>
Diff between fdaPDE versions 1.1-7 dated 2022-06-01 and 1.1-8 dated 2022-06-17
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 1 - R/smoothing_time.R | 2 +- README.md | 2 +- man/refine.mesh.1.5D.Rd | 4 ++-- 6 files changed, 15 insertions(+), 16 deletions(-)
Title: A Combined Intercation Test for Unreplicated Two-Way Tables
Description: There are several non-functional-form-based interaction tests for testing interaction in unreplicated two-way layouts. However, no single test can detect all patterns of possible interaction and the tests are sensitive to a particular pattern of interaction. This package combines six non-functional-form-based interaction tests for testing additivity. These six tests were proposed by Boik (1993) <doi:10.1080/02664769300000004>, Piepho (1994), Kharrati-Kopaei and Sadooghi-Alvandi (2007) <doi:10.1080/03610920701386851>, Franck et al. (2013) <doi:10.1016/j.csda.2013.05.002>, Malik et al. (2016) <doi:10.1080/03610918.2013.870196> and Kharrati-Kopaei and Miller (2016) <doi:10.1080/00949655.2015.1057821>. The p-values of these six tests are combined by Bonferroni, Sidak, Jacobi polynomial expansion, and the Gaussian copula methods to provide researchers with a testing approach which leverages many existing methods to detect disparate forms of non-additivity. This package is based on the following published paper: Shenavari and Kharrati-Kopaei (2018) "A Method for Testing Additivity in Unreplicated Two-Way Layouts Based on Combining Multiple Interaction Tests". In addition, several sentences in help files or descriptions were copied from that paper.
Author: Zahra Shenavari [aut],
Hossein Haghbin [aut, cre] ,
Mahmood Kharrati-Kopaei [aut] ,
Seyed Morteza Najibi [aut]
Maintainer: Hossein Haghbin <haghbin@pgu.ac.ir>
Diff between combinIT versions 1.0.0 dated 2022-03-21 and 1.5.0 dated 2022-06-17
combinIT-1.0.0/combinIT/man/B.f.Rd |only combinIT-1.0.0/combinIT/man/piepho.Rd |only combinIT-1.5.0/combinIT/DESCRIPTION | 13 combinIT-1.5.0/combinIT/MD5 | 51 +-- combinIT-1.5.0/combinIT/NAMESPACE | 3 combinIT-1.5.0/combinIT/NEWS.md |only combinIT-1.5.0/combinIT/R/Boik_test.R | 44 ++- combinIT-1.5.0/combinIT/R/CNV.R | 2 combinIT-1.5.0/combinIT/R/CPI_test.R | 178 ++++++++----- combinIT-1.5.0/combinIT/R/Franck_test.R | 124 ++++++--- combinIT-1.5.0/combinIT/R/ITtestClass_methods.R | 21 - combinIT-1.5.0/combinIT/R/KKM_test.R | 30 +- combinIT-1.5.0/combinIT/R/KKSA_test.R | 82 ++++-- combinIT-1.5.0/combinIT/R/Malik_test.R | 37 +- combinIT-1.5.0/combinIT/R/Piepho_test.R | 80 ++++- combinIT-1.5.0/combinIT/R/combtest_methods.R | 25 + combinIT-1.5.0/combinIT/R/internal.R | 326 ++++++++++++++++++++---- combinIT-1.5.0/combinIT/R/plots.R | 20 - combinIT-1.5.0/combinIT/man/Boik.test.Rd | 20 - combinIT-1.5.0/combinIT/man/CNV.Rd | 2 combinIT-1.5.0/combinIT/man/CPI.test.Rd | 36 +- combinIT-1.5.0/combinIT/man/Franck.test.Rd | 41 ++- combinIT-1.5.0/combinIT/man/KKM.test.Rd | 14 - combinIT-1.5.0/combinIT/man/KKSA.test.Rd | 46 ++- combinIT-1.5.0/combinIT/man/Malik.test.Rd | 19 - combinIT-1.5.0/combinIT/man/Piepho.test.Rd | 22 + combinIT-1.5.0/combinIT/man/interactionplot.Rd | 2 combinIT-1.5.0/combinIT/src/fastcodes.cpp | 2 28 files changed, 904 insertions(+), 336 deletions(-)
Title: An Easy Way to Report ROC Analysis
Description: Provides an easy way to report the results of ROC analysis, including:
1. an ROC curve.
2. the value of Cutoff, AUC (Area Under Curve), ACC (accuracy),
SEN (sensitivity), SPE (specificity),
PLR (positive likelihood ratio), NLR (negative likelihood ratio),
PPV (positive predictive value), NPV (negative predictive value),
PPA (percentage of positive accordance), NPA (percentage of negative accordance), TPA (percentage of total accordance),
KAPPA (kappa value).
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Diff between reportROC versions 3.5 dated 2020-07-21 and 3.6 dated 2022-06-17
DESCRIPTION | 19 ++++--- MD5 | 11 ++-- NAMESPACE | 7 ++ R/reportROC.R | 131 +++++++++++++++++++++++++++++++++++++------------------ build |only man/aSAH.Rd | 15 ++---- man/reportROC.Rd | 35 +++++++------- 7 files changed, 137 insertions(+), 81 deletions(-)
Title: Dose-Response Data Analysis
Description: Fit logistic functions to observed dose-response continuous
data and evaluate goodness-of-fit measures. See Malyutina A., Tang J.,
and Pessia A. (2021) <doi:10.1101/2021.06.07.447323>.
Author: Alberto Pessia [aut, cre] ,
Alina Malyutina [ctb]
Maintainer: Alberto Pessia <dev@albertopessia.com>
Diff between drda versions 1.0.0 dated 2021-06-10 and 2.0.0 dated 2022-06-17
DESCRIPTION | 40 MD5 | 128 +- NAMESPACE | 207 ++- NEWS.md | 42 R/S3.R | 139 +- R/common.R | 170 +- R/curve_variance.R |only R/data.R |only R/drda-package.R | 10 R/drda.R | 665 ++++++++--- R/effective_dose.R |only R/gompertz.R | 928 +++++++++------ R/loggompertz.R |only R/logistic2.R | 973 +++++++++++----- R/logistic4.R | 989 ++++++++++------ R/logistic5.R | 1153 +++++++++++-------- R/logistic6.R | 1310 +++++++++++++--------- R/loglogistic2.R |only R/loglogistic4.R |only R/loglogistic5.R |only R/loglogistic6.R |only R/naac.R |only R/nauc.R |only R/ntrm.R | 27 R/ntrm_constrained.R | 39 R/ntrm_functions.R | 2 R/plot.R | 993 ++++++++++------ build/vignette.rds |binary data |only inst/WORDLIST |only inst/doc/drda.R | 264 ++-- inst/doc/drda.Rtex | 747 +++++++----- inst/doc/drda.pdf |binary man/drda-package.Rd | 10 man/drda.Rd | 245 +++- man/effective_dose.Rd |only man/gompertz_fn.Rd | 16 man/gompertz_gradient.Rd |only man/gompertz_gradient_2.Rd |only man/loggompertz_fn.Rd |only man/loggompertz_gradient.Rd |only man/loggompertz_gradient_2.Rd |only man/logistic2_fn.Rd | 17 man/logistic2_gradient.Rd |only man/logistic2_gradient_2.Rd |only man/logistic4_fn.Rd | 20 man/logistic4_gradient.Rd |only man/logistic4_gradient_2.Rd |only man/logistic5_fn.Rd | 17 man/logistic5_gradient.Rd |only man/logistic5_gradient_2.Rd |only man/logistic6_fn.Rd | 22 man/logistic6_gradient.Rd |only man/logistic6_gradient_2.Rd |only man/loglogistic2_fn.Rd |only man/loglogistic2_gradient.Rd |only man/loglogistic2_gradient_2.Rd |only man/loglogistic4_fn.Rd |only man/loglogistic4_gradient.Rd |only man/loglogistic4_gradient_2.Rd |only man/loglogistic5_fn.Rd |only man/loglogistic5_gradient.Rd |only man/loglogistic5_gradient_2.Rd |only man/loglogistic6_fn.Rd |only man/loglogistic6_gradient.Rd |only man/loglogistic6_gradient_2.Rd |only man/naac.Rd | 43 man/nauc.Rd | 41 man/plot.drda.Rd | 14 man/voropm2.Rd |only tests/spelling.R |only tests/testdata.R |only tests/testthat.R | 2 tests/testthat/test_gompertz.R | 1593 ++++++++++++++------------- tests/testthat/test_loggompertz.R |only tests/testthat/test_logistic2.R | 1501 +++++++++++++++---------- tests/testthat/test_logistic4.R | 1575 ++++++++++++++------------ tests/testthat/test_logistic5.R | 1829 +++++++++++++++++-------------- tests/testthat/test_logistic6.R | 1931 ++++++++++++++++++++------------- tests/testthat/test_loglogistic2.R |only tests/testthat/test_loglogistic4.R |only tests/testthat/test_loglogistic5.R |only tests/testthat/test_loglogistic6.R |only tests/testthat/test_ntrm.R | 12 tests/testthat/test_ntrm_constrained.R | 22 tests/testthat/test_ntrm_functions.R | 2 vignettes/biblio.bib | 90 + vignettes/drda.Rtex | 747 +++++++----- 88 files changed, 11144 insertions(+), 7431 deletions(-)
Title: Generates Networks from BTS Data
Description: A flexible tool that allows generating bespoke
air transport statistics for urban studies based on publicly available
data from the Bureau of Transport Statistics (BTS) in the United States
<https://www.transtats.bts.gov/databases.asp?Z1qr_VQ=E&Z1qr_Qr5p=N8vn6v10&f7owrp6_VQF=D>.
Author: Filipe Teixeira [aut, cre]
Maintainer: Filipe Teixeira <Filipe.MarquesTeixeira@Ugent.be>
Diff between skynet versions 1.4.2 dated 2022-06-02 and 1.4.3 dated 2022-06-17
DESCRIPTION | 6 MD5 | 16 +- NAMESPACE | 5 NEWS.md | 4 R/download_db1b.R | 5 R/download_t100.R | 311 ++++++++++++++++++--------------------------------- R/skynet.R | 4 README.md | 2 inst/doc/skynet.html | 12 - 9 files changed, 144 insertions(+), 221 deletions(-)
Title: Generic Implementation of a PK/PD Model
Description: A generic, easy-to-use and expandable implementation of a
pharmacokinetic (PK) / pharmacodynamic (PD) model based on the S4
class system. This package allows the user to read/write a
pharmacometric model from/to files and adapt it further on the fly in
the R environment. For this purpose, this package provides an
intuitive API to add, modify or delete equations, ordinary
differential equations (ODE's), model parameters or compartment
properties (like infusion duration or rate, bioavailability and
initial values). Finally, this package also provides a useful export
of the model for use with simulation packages 'RxODE' and 'mrgsolve'.
This package is designed and intended to be used with package
'campsis', a PK/PD simulation platform built on top of 'RxODE' and
'mrgsolve'.
Author: Nicolas Luyckx [aut, cre]
Maintainer: Nicolas Luyckx <nicolas.luyckx@calvagone.com>
Diff between campsismod versions 0.8.1 dated 2022-05-24 and 0.9.0 dated 2022-06-17
campsismod-0.8.1/campsismod/man/UndefinedPosition.Rd |only campsismod-0.8.1/campsismod/man/pmx_undefined_position-class.Rd |only campsismod-0.9.0/campsismod/DESCRIPTION | 8 campsismod-0.9.0/campsismod/MD5 | 131 ++-- campsismod-0.9.0/campsismod/NAMESPACE | 315 +++++----- campsismod-0.9.0/campsismod/NEWS.md | 8 campsismod-0.9.0/campsismod/R/campsis_model.R | 18 campsismod-0.9.0/campsismod/R/code_record.R | 50 - campsismod-0.9.0/campsismod/R/code_records.R | 24 campsismod-0.9.0/campsismod/R/compartment.R | 8 campsismod-0.9.0/campsismod/R/compartment_bioavailability.R | 8 campsismod-0.9.0/campsismod/R/compartment_infusion_duration.R | 8 campsismod-0.9.0/campsismod/R/compartment_infusion_rate.R | 8 campsismod-0.9.0/campsismod/R/compartment_initial_condition.R | 8 campsismod-0.9.0/campsismod/R/compartment_lag_time.R | 8 campsismod-0.9.0/campsismod/R/compartment_property.R | 8 campsismod-0.9.0/campsismod/R/data.R | 29 campsismod-0.9.0/campsismod/R/generic.R | 37 + campsismod-0.9.0/campsismod/R/generic_element_position.R | 51 - campsismod-0.9.0/campsismod/R/generic_list.R | 19 campsismod-0.9.0/campsismod/R/model_comment.R | 8 campsismod-0.9.0/campsismod/R/model_equation.R | 8 campsismod-0.9.0/campsismod/R/model_if_statement.R | 8 campsismod-0.9.0/campsismod/R/model_line_break.R | 8 campsismod-0.9.0/campsismod/R/model_ode.R | 16 campsismod-0.9.0/campsismod/R/model_statement.R | 8 campsismod-0.9.0/campsismod/R/model_statements.R | 8 campsismod-0.9.0/campsismod/R/model_unknown_statement.R | 8 campsismod-0.9.0/campsismod/R/parameter.R | 19 campsismod-0.9.0/campsismod/R/parameters.R | 57 + campsismod-0.9.0/campsismod/R/pattern.R | 14 campsismod-0.9.0/campsismod/README.md | 71 +- campsismod-0.9.0/campsismod/data/model_suite.rda |only campsismod-0.9.0/campsismod/inst/doc/campsismod.R | 2 campsismod-0.9.0/campsismod/inst/doc/campsismod.Rmd | 4 campsismod-0.9.0/campsismod/inst/doc/campsismod.html | 243 ++++--- campsismod-0.9.0/campsismod/inst/doc/v05_parameters.R | 8 campsismod-0.9.0/campsismod/inst/doc/v05_parameters.Rmd | 8 campsismod-0.9.0/campsismod/inst/doc/v05_parameters.html | 228 +++---- campsismod-0.9.0/campsismod/inst/doc/v06_append_pd_model.R | 10 campsismod-0.9.0/campsismod/inst/doc/v06_append_pd_model.Rmd | 10 campsismod-0.9.0/campsismod/inst/doc/v06_append_pd_model.html | 89 +- campsismod-0.9.0/campsismod/man/delete.Rd | 3 campsismod-0.9.0/campsismod/man/getUncertainty.Rd |only campsismod-0.9.0/campsismod/man/getVarCov.Rd |only campsismod-0.9.0/campsismod/man/model_library.Rd | 8 campsismod-0.9.0/campsismod/man/model_suite.Rd |only campsismod-0.9.0/campsismod/tests/testthat/testAutoDetectNONMEM.R | 10 campsismod-0.9.0/campsismod/tests/testthat/testCampsisModel.R | 18 campsismod-0.9.0/campsismod/tests/testthat/testCodeRecords.R | 22 campsismod-0.9.0/campsismod/tests/testthat/testCompartments.R | 21 campsismod-0.9.0/campsismod/tests/testthat/testGenericList.R | 4 campsismod-0.9.0/campsismod/tests/testthat/testModelLibrary.R | 4 campsismod-0.9.0/campsismod/tests/testthat/testMrgsolveConversion.R | 6 campsismod-0.9.0/campsismod/tests/testthat/testNONMEMConversion.R | 2 campsismod-0.9.0/campsismod/tests/testthat/testParameters.R | 10 campsismod-0.9.0/campsismod/tests/testthat/testPattern.R | 4 campsismod-0.9.0/campsismod/tests/testthat/testRxODEConversion.R | 4 campsismod-0.9.0/campsismod/tests/testthat/testShowUncertainty.R |only campsismod-0.9.0/campsismod/vignettes/campsismod.Rmd | 4 campsismod-0.9.0/campsismod/vignettes/path_to_model_folder/model.campsis | 35 - campsismod-0.9.0/campsismod/vignettes/path_to_model_folder/omega.csv | 10 campsismod-0.9.0/campsismod/vignettes/path_to_model_folder/sigma.csv | 2 campsismod-0.9.0/campsismod/vignettes/path_to_model_folder/theta.csv | 9 campsismod-0.9.0/campsismod/vignettes/resources/pkpd_model_concentration.png |binary campsismod-0.9.0/campsismod/vignettes/resources/pkpd_model_effect.png |binary campsismod-0.9.0/campsismod/vignettes/resources/results_mrgsolve.png |binary campsismod-0.9.0/campsismod/vignettes/resources/results_rxode.png |binary campsismod-0.9.0/campsismod/vignettes/v05_parameters.Rmd | 8 campsismod-0.9.0/campsismod/vignettes/v06_append_pd_model.Rmd | 10 70 files changed, 970 insertions(+), 805 deletions(-)
Title: Interface to 'Zenodo' REST API
Description: Provides an Interface to 'Zenodo' (<https://zenodo.org>) REST API,
including management of depositions, attribution of DOIs by 'Zenodo' and
upload and download of files.
Author: Emmanuel Blondel [aut, cre] ,
Julien Barde [ctb] ,
Stephen Eglen [ctb] ,
Hans Van Calster [ctb] ,
Floris Vanderhaeghe [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between zen4R versions 0.6 dated 2022-05-01 and 0.6-1 dated 2022-06-17
DESCRIPTION | 11 ++++++----- MD5 | 13 +++++++++---- NEWS.md | 11 +++++++++-- R/ZenodoManager.R | 5 ++++- README.md | 6 +++--- build |only inst |only vignettes |only 8 files changed, 31 insertions(+), 15 deletions(-)
Title: Execute and Control System Processes
Description: Tools to run system processes in the background. It can
check if a background process is running; wait on a background process
to finish; get the exit status of finished processes; kill background
processes. It can read the standard output and error of the processes,
using non-blocking connections. 'processx' can poll a process for
standard output or error, with a timeout. It can also poll several
processes at once.
Author: Gabor Csardi [aut, cre, cph] ,
Winston Chang [aut],
RStudio [cph, fnd],
Mango Solutions [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between processx versions 3.6.0 dated 2022-06-10 and 3.6.1 dated 2022-06-17
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ R/errors.R | 13 +++++++++---- src/client.c | 4 ++-- tests/testthat.R | 4 +--- tests/testthat/test-err.R | 2 +- 7 files changed, 30 insertions(+), 19 deletions(-)
Title: Model Wrappers for Multi-Level Models
Description: Bindings for hierarchical regression models for use with the
'parsnip' package. Models include longitudinal generalized linear
models (Liang and Zeger, 1986) <doi:10.1093/biomet/73.1.13>, and
mixed-effect models (Pinheiro and Bates)
<doi:10.1007/978-1-4419-0318-1_1>.
Author: Max Kuhn [aut] ,
Hannah Frick [aut, cre] ,
RStudio [cph, fnd]
Maintainer: Hannah Frick <hannah@rstudio.com>
Diff between multilevelmod versions 0.2.0 dated 2022-05-03 and 1.0.0 dated 2022-06-17
DESCRIPTION | 14 +++--- MD5 | 17 ++++---- NEWS.md | 8 +++ R/aaa.R | 1 R/linear_reg_data.R | 70 +++++++++++++++++++++++++++++++++ R/misc.R | 12 ++++- README.md | 9 ++-- inst/WORDLIST | 42 +++++-------------- tests/testthat/test-linear-reg-glmer.R |only tests/testthat/test-linear-reg-lme4.R | 26 ++++++++++++ 10 files changed, 147 insertions(+), 52 deletions(-)
Title: Access Women's Basketball Play by Play Data
Description: A utility for working with women's basketball data. A scraping and aggregating interface for the WNBA Stats API <https://stats.wnba.com/> and ESPN's <https://www.espn.com> women's college basketball and WNBA statistics. It provides users with the capability to access the game play-by-plays, box scores, standings and results to analyze the data for themselves.
Author: Saiem Gilani [aut, cre],
Geoffery Hutchinson [aut]
Maintainer: Saiem Gilani <saiem.gilani@gmail.com>
Diff between wehoop versions 1.2.1 dated 2021-11-09 and 1.5.0 dated 2022-06-17
DESCRIPTION | 33 MD5 | 205 ++++- NAMESPACE | 116 +++ NEWS.md | 148 +++- R/espn_wbb_data.R | 978 +++++++++++++++++++++++---- R/espn_wnba_data.R | 775 +++++++++++++++++++-- R/utils.R | 47 + R/utils_wnba_stats.R | 25 R/wbb_pbp.R | 31 R/wehoop-package.R | 1 R/wnba_data_pbp.R |only R/wnba_pbp.R | 31 R/wnba_stats_boxscore.R |only R/wnba_stats_cume.R |only R/wnba_stats_draft.R |only R/wnba_stats_franchise.R |only R/wnba_stats_hustle.R |only R/wnba_stats_leaders.R |only R/wnba_stats_league.R |only R/wnba_stats_league_dash.R |only R/wnba_stats_lineups.R |only R/wnba_stats_pbp.R |only R/wnba_stats_player.R |only R/wnba_stats_player_dash.R |only R/wnba_stats_roster.R |only R/wnba_stats_scoreboard.R |only R/wnba_stats_shotchart.R |only R/wnba_stats_team.R |only R/wnba_stats_team_dash.R |only R/wnba_stats_video.R |only README.md | 50 - man/allplayers.Rd |only man/alltime.Rd |only man/assist_tracker.Rd |only man/assists.Rd |only man/bs_advv2.Rd |only man/bs_ffv2.Rd |only man/bs_miscv2.Rd |only man/bs_pt_v2.Rd |only man/bs_scoringv2.Rd |only man/bs_summaryv2.Rd |only man/bs_tradv2.Rd |only man/bs_usagev2.Rd |only man/commonplayerinfo.Rd |only man/commonplayoffseries.Rd |only man/commonteamroster.Rd |only man/cumestatsplayer.Rd |only man/cumestatsplayergames.Rd |only man/cumestatsteam.Rd |only man/cumestatsteamgames.Rd |only man/dboard.Rd |only man/dcombine_anthro.Rd |only man/dcombine_drill.Rd |only man/dcombine_nsshooting.Rd |only man/dcombine_sshooting.Rd |only man/dcombine_stats.Rd |only man/dhistory.Rd |only man/espn_wbb_player_stats.Rd |only man/espn_wbb_scoreboard.Rd | 13 man/espn_wbb_team_stats.Rd |only man/espn_wnba_player_stats.Rd |only man/espn_wnba_team_stats.Rd |only man/fantasywidget.Rd |only man/franchisehistory.Rd |only man/franchiseleaders.Rd |only man/franchiseplayers.Rd |only man/game_rotation.Rd |only man/homepageleaders.Rd |only man/homepagev2.Rd |only man/hustle_bs.Rd |only man/hustle_p.Rd |only man/hustle_pl.Rd |only man/hustle_t.Rd |only man/hustle_tl.Rd |only man/l_gamelog.Rd |only man/l_standingsv3.Rd |only man/ld_pbiostats.Rd |only man/ld_pclutch.Rd |only man/ld_pshotloc.Rd |only man/ld_pstats.Rd |only man/ld_tclutch.Rd |only man/ld_tshotloc.Rd |only man/ld_tstats.Rd |only man/leaguedashlineups.Rd |only man/leaguelineupviz.Rd |only man/leagueplayerondetails.Rd |only man/leagueseasonmatchups.Rd |only man/lg_streak.Rd |only man/load_wbb_pbp.Rd | 2 man/load_wbb_player_box.Rd | 2 man/load_wbb_schedule.Rd | 2 man/load_wbb_team_box.Rd | 2 man/load_wnba_pbp.Rd | 2 man/load_wnba_player_box.Rd | 2 man/load_wnba_schedule.Rd | 2 man/load_wnba_team_box.Rd | 2 man/most_recent_wbb_season.Rd |only man/most_recent_wnba_season.Rd |only man/p_est_metr.Rd |only man/p_gamelog.Rd |only man/p_gamelogs.Rd |only man/p_headshot.Rd |only man/p_index.Rd |only man/p_n_g.Rd |only man/pbp.Rd |only man/pbyclutch.Rd |only man/pbygamesplits.Rd |only man/pbygeneralsplits.Rd |only man/pbylastngames.Rd |only man/pbyopponent.Rd |only man/pbyshootingsplits.Rd |only man/pbyteamperformance.Rd |only man/pbyyearoveryear.Rd |only man/pcareerbycollege.Rd |only man/pcareerbycollege_ru.Rd |only man/pfantasy.Rd |only man/pfantasy_bg.Rd |only man/pg_streak.Rd |only man/playerawards.Rd |only man/playercareerstats.Rd |only man/playercompare.Rd |only man/playerprofilev2.Rd |only man/playervsplayer.Rd |only man/sc.Rd |only man/sc_lw.Rd |only man/scoreboard.Rd |only man/scoreboardv2.Rd |only man/t_details.Rd |only man/t_est_metr.Rd |only man/t_gamelog.Rd |only man/t_gamelogs.Rd |only man/t_vs_p.Rd |only man/t_yby_stats.Rd |only man/tbyclutch.Rd |only man/tbygamesplits.Rd |only man/tbygeneralsplits.Rd |only man/tbylastngames.Rd |only man/tbyopponent.Rd |only man/tbyshootingsplits.Rd |only man/tbyteamperformance.Rd |only man/tbyyearoveryear.Rd |only man/teamdashlineups.Rd |only man/teaminfo.Rd |only man/tg_streak.Rd |only man/thist_leaders.Rd |only man/tp.Rd |only man/tp_onoff_det.Rd |only man/tp_onoffsummary.Rd |only man/videodetails.Rd |only man/videoevents.Rd |only man/videostatus.Rd |only man/wehoop-package.Rd | 28 man/wnba_data_pbp.Rd |only tests/testthat/test-espn_wbb_game_all.R | 159 +++- tests/testthat/test-espn_wbb_game_pbp.R | 57 + tests/testthat/test-espn_wbb_player_box.R | 45 - tests/testthat/test-espn_wbb_player_stats.R |only tests/testthat/test-espn_wbb_rankings.R | 2 tests/testthat/test-espn_wbb_scoreboard.R | 45 - tests/testthat/test-espn_wbb_team_box.R | 67 + tests/testthat/test-espn_wbb_team_stats.R |only tests/testthat/test-espn_wbb_teams.R | 5 tests/testthat/test-espn_wnba_game_all.R | 159 +++- tests/testthat/test-espn_wnba_pbp.R | 57 + tests/testthat/test-espn_wnba_player_box.R | 42 - tests/testthat/test-espn_wnba_player_stats.R |only tests/testthat/test-espn_wnba_scoreboard.R | 46 + tests/testthat/test-espn_wnba_team_box.R | 66 + tests/testthat/test-espn_wnba_team_stats.R |only tests/testthat/test-espn_wnba_teams.R | 3 tests/testthat/test-ncaa_wbb_NET_rankings.R | 2 171 files changed, 2702 insertions(+), 550 deletions(-)
More information about bayesassurance at CRAN
Permanent link
Title: Causal Discovery under a Confounder Blanket
Description: Methods for learning causal relationships among a set of
foreground variables X based on signals from a (potentially much
larger) set of background variables Z, which are known non-descendants
of X. The confounder blanket learner (CBL) uses sparse regression
techniques to simultaneously perform many conditional independence
tests, with complementary pairs stability selection to guarantee
finite sample error control. CBL is sound and complete with respect to
a so-called "lazy oracle", and works with both linear and nonlinear
systems. For details, see Watson & Silva (2022) <arXiv:2205.05715>.
Author: David Watson [aut, cre]
Maintainer: David Watson <david.s.watson11@gmail.com>
Diff between cbl versions 0.1 dated 2022-06-10 and 0.1.1 dated 2022-06-17
DESCRIPTION | 6 +++--- MD5 | 11 ++++++----- NEWS.md |only R/cbl.R | 45 +++++++++++++++++++++++++++++---------------- R/utils.R | 11 +++++++---- data/bipartite.RData |binary man/cbl.Rd | 2 +- 7 files changed, 46 insertions(+), 29 deletions(-)
Title: Spatial Resampling Infrastructure
Description: Functions and classes for spatial resampling to use with the
'rsample' package, such as spatial cross-validation (Brenning, 2012)
<doi:10.1109/IGARSS.2012.6352393>. The scope of 'rsample' and
'spatialsample' is to provide the basic building blocks for creating
and analyzing resamples of a spatial data set, but neither package
includes functions for modeling or computing statistics. The resampled
spatial data sets created by 'spatialsample' do not contain much
overhead in memory.
Author: Julia Silge [aut, cre] ,
Michael Mahoney [aut] ,
RStudio [cph, fnd]
Maintainer: Julia Silge <julia.silge@rstudio.com>
Diff between spatialsample versions 0.1.0 dated 2021-03-04 and 0.2.0 dated 2022-06-17
spatialsample-0.1.0/spatialsample/R/compat-dplyr.R |only spatialsample-0.1.0/spatialsample/R/pkg.R |only spatialsample-0.1.0/spatialsample/man/figures/README-unnamed-chunk-3-.gif |only spatialsample-0.1.0/spatialsample/man/figures/README-unnamed-chunk-4-.gif |only spatialsample-0.1.0/spatialsample/man/pretty.spatial_clustering_cv.Rd |only spatialsample-0.1.0/spatialsample/man/spatialsample.Rd |only spatialsample-0.2.0/spatialsample/DESCRIPTION | 54 - spatialsample-0.2.0/spatialsample/MD5 | 91 + spatialsample-0.2.0/spatialsample/NAMESPACE | 54 - spatialsample-0.2.0/spatialsample/NEWS.md | 63 + spatialsample-0.2.0/spatialsample/R/0_imports.R | 16 spatialsample-0.2.0/spatialsample/R/autoplot.R |only spatialsample-0.2.0/spatialsample/R/buffer.R |only spatialsample-0.2.0/spatialsample/R/compat-vctrs.R | 179 +++ spatialsample-0.2.0/spatialsample/R/data.R |only spatialsample-0.2.0/spatialsample/R/labels.R | 84 + spatialsample-0.2.0/spatialsample/R/misc.R | 66 + spatialsample-0.2.0/spatialsample/R/spatial_block_cv.R |only spatialsample-0.2.0/spatialsample/R/spatial_clustering_cv.R | 210 ++- spatialsample-0.2.0/spatialsample/R/spatial_vfold_cv.R |only spatialsample-0.2.0/spatialsample/R/sysdata.rda |only spatialsample-0.2.0/spatialsample/R/zzz.R |only spatialsample-0.2.0/spatialsample/README.md | 90 - spatialsample-0.2.0/spatialsample/build/partial.rdb |only spatialsample-0.2.0/spatialsample/build/vignette.rds |binary spatialsample-0.2.0/spatialsample/data |only spatialsample-0.2.0/spatialsample/inst/doc/spatialsample.R | 82 + spatialsample-0.2.0/spatialsample/inst/doc/spatialsample.Rmd | 109 +- spatialsample-0.2.0/spatialsample/inst/doc/spatialsample.html | 537 +++++++--- spatialsample-0.2.0/spatialsample/man/autoplot.spatial_rset.Rd |only spatialsample-0.2.0/spatialsample/man/boston_canopy.Rd |only spatialsample-0.2.0/spatialsample/man/buffer_indices.Rd |only spatialsample-0.2.0/spatialsample/man/figures/README-2022-06-12_boston-anim-.gif |only spatialsample-0.2.0/spatialsample/man/figures/README-2022-06-12_boston_static-1.png |only spatialsample-0.2.0/spatialsample/man/figures/logo.png |only spatialsample-0.2.0/spatialsample/man/reexports.Rd | 3 spatialsample-0.2.0/spatialsample/man/spatial_block_cv.Rd |only spatialsample-0.2.0/spatialsample/man/spatial_clustering_cv.Rd | 72 + spatialsample-0.2.0/spatialsample/man/spatial_vfold.Rd |only spatialsample-0.2.0/spatialsample/man/spatialsample-package.Rd |only spatialsample-0.2.0/spatialsample/tests/testthat.R | 2 spatialsample-0.2.0/spatialsample/tests/testthat/_snaps/autoplot |only spatialsample-0.2.0/spatialsample/tests/testthat/_snaps/autoplot.md |only spatialsample-0.2.0/spatialsample/tests/testthat/_snaps/buffer.md |only spatialsample-0.2.0/spatialsample/tests/testthat/_snaps/compat-vctrs.md |only spatialsample-0.2.0/spatialsample/tests/testthat/_snaps/misc.md |only spatialsample-0.2.0/spatialsample/tests/testthat/_snaps/spatial_block_cv.md |only spatialsample-0.2.0/spatialsample/tests/testthat/_snaps/spatial_clustering_cv.md | 56 + spatialsample-0.2.0/spatialsample/tests/testthat/_snaps/spatial_vfold_cv.md |only spatialsample-0.2.0/spatialsample/tests/testthat/helper-rset.R | 78 - spatialsample-0.2.0/spatialsample/tests/testthat/test-autoplot.R |only spatialsample-0.2.0/spatialsample/tests/testthat/test-buffer.R |only spatialsample-0.2.0/spatialsample/tests/testthat/test-compat-dplyr.R | 312 ++--- spatialsample-0.2.0/spatialsample/tests/testthat/test-compat-vctrs.R | 190 +-- spatialsample-0.2.0/spatialsample/tests/testthat/test-misc.R |only spatialsample-0.2.0/spatialsample/tests/testthat/test-spatial_block_cv.R |only spatialsample-0.2.0/spatialsample/tests/testthat/test-spatial_clustering_cv.R | 280 ++++- spatialsample-0.2.0/spatialsample/tests/testthat/test-spatial_vfold_cv.R |only spatialsample-0.2.0/spatialsample/vignettes/spatialsample.Rmd | 109 +- 59 files changed, 2008 insertions(+), 729 deletions(-)
Title: Ecological Restoration Planning
Description: Flexible framework for ecological restoration planning. It aims to identify priority areas for restoration efforts using optimization algorithms (based on Justeau-Allaire et al. 2021 <doi:10.1111/1365-2664.13803>). Priority areas can be identified by maximizing landscape indices, such as the effective mesh size (Jaeger 2000 <doi:10.1023/A:1008129329289>), or the integral index of connectivity (Pascual-Hortal & Saura 2006 <doi:10.1007/s10980-006-0013-z>). Additionally, constraints can be used to ensure that priority areas exhibit particular characteristics (e.g., ensure that particular places are not selected for restoration, ensure that priority areas form a single contiguous network). Furthermore, multiple near-optimal solutions can be generated to explore multiple options in restoration planning. The package leverages the 'Choco-solver' software to perform optimization using constraint programming (CP) techniques (<https://choco-solver.org/>).
Author: Dimitri Justeau-Allaire [aut, cre]
,
Jeffrey O Hanson [aut] ,
Ghislain Vieilledent [aut] ,
Philippe Vismara [aut],
Xavier Lorca [aut],
Philippe Birnbaum [aut]
Maintainer: Dimitri Justeau-Allaire <dimitri.justeau@gmail.com>
Diff between restoptr versions 1.0.0 dated 2022-06-09 and 1.0.1 dated 2022-06-17
DESCRIPTION | 6 +- MD5 | 18 +++--- NEWS.md | 5 + README.md | 25 ++++---- build/vignette.rds |binary inst/doc/restoptr.html | 87 +++++++++++++++---------------- man/figures/README-habitat_data-1.png |binary man/figures/README-locked_out_data-1.png |binary man/figures/README-solution-1.png |binary tests/testthat/test_solve.R | 6 +- 10 files changed, 76 insertions(+), 71 deletions(-)
Title: Stepwise Regression with Assumptions Checking
Description: The stepwise regression with assumptions checking and the possible Box-Cox transformation.
Author: Thidarat Thongsri [aut, cre],
Klairung Samart [aut]
Maintainer: Thidarat Thongsri <k.th.thidarat@gmail.com>
Diff between mlrpro versions 0.1.0 dated 2022-06-03 and 0.1.1 dated 2022-06-17
DESCRIPTION | 6 - MD5 | 10 +- R/mlrpro.R | 214 ++++++++++++++++++++++++++++----------------- build/vignette.rds |binary inst/doc/Introduction.html | 196 ++++++++++++++++++++++++++++++++++++++++- man/mlrpro-package.Rd | 5 - 6 files changed, 343 insertions(+), 88 deletions(-)
Title: Functions and Datasets for the Data Science Course at IBAW
Description: A collection of useful functions and datasets for the Data Science
Course at IBAW in Lucerne.
Author: Stefan Lanz
Maintainer: Stefan Lanz <slanz1137@gmail.com>
Diff between ibawds versions 0.4.0 dated 2022-04-25 and 0.5.0 dated 2022-06-17
DESCRIPTION | 16 - MD5 | 35 ++- NAMESPACE | 3 R/data.R | 64 ++++++- R/find_similar_colour.R |only R/voronoi.R | 127 +++++++++++++- build/partial.rdb |binary data/breast_cancer.rda |only data/cran_history.rda |binary data/noisy_data.rda |only inst/WORDLIST | 4 man/breast_cancer.Rd |only man/cluster_with_centers.Rd |only man/find_similar_colour.Rd |only man/galton_sons.Rd | 2 man/mtcars2.Rd | 2 man/noisy_data.Rd |only man/voronoi_diagram.Rd | 4 tests/testthat/_snaps/voronoi/voronoi-uncoloured-data.svg |only tests/testthat/test-cran_packages.R | 3 tests/testthat/test-find_similar_colour.R |only tests/testthat/test-install.R | 3 tests/testthat/test-voronoi.R | 81 ++++++++ 23 files changed, 310 insertions(+), 34 deletions(-)
Title: GeoServer REST API R Interface
Description: Provides an R interface to the GeoServer REST API, allowing to upload
and publish data in a GeoServer web-application and expose data to OGC Web-Services.
The package currently supports all CRUD (Create,Read,Update,Delete) operations
on GeoServer workspaces, namespaces, datastores (stores of vector data), featuretypes,
layers, styles, as well as vector data upload operations. For more information about
the GeoServer REST API, see <https://docs.geoserver.org/stable/en/user/rest/>.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geosapi versions 0.6-2 dated 2022-06-14 and 0.6-3 dated 2022-06-17
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 9 ++++++++- R/GSDatastoreManager.R | 6 +++--- README.md | 2 +- inst/doc/geosapi.Rmd | 2 +- inst/doc/geosapi.html | 2 +- vignettes/geosapi.Rmd | 2 +- 8 files changed, 26 insertions(+), 19 deletions(-)
Title: Rmetrics - Analysing and Modeling Multivariate Financial Return
Distributions
Description: Provides a collection of functions
to manage, to investigate and to analyze bivariate and multivariate
data sets of financial returns.
Author: Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb],
CRAN team [ctb]
Maintainer: Tobias Setz <tobias.setz@live.com>
Diff between fMultivar versions 3042.80.1 dated 2020-03-07 and 3042.80.2 dated 2022-06-17
DESCRIPTION | 14 +++++------ MD5 | 6 ++--- R/utils-gridding2d.R | 55 ++++++++++++++++++++++------------------------- man/utils-integrate2d.Rd | 4 +-- 4 files changed, 38 insertions(+), 41 deletions(-)
Title: Rmetrics - Markets and Basic Statistics
Description: Provides a collection of functions to
explore and to investigate basic properties of financial returns
and related quantities.
The covered fields include techniques of explorative data analysis
and the investigation of distributional properties, including
parameter estimation and hypothesis testing. Even more there are
several utility functions for data handling and management.
Author: Diethelm Wuertz [aut],
Tobias Setz [cre],
Yohan Chalabi [ctb]
Martin Maechler [ctb],
CRAN Team [ctb]
Maintainer: Tobias Setz <tobias.setz@live.com>
Diff between fBasics versions 3042.89.1 dated 2020-03-07 and 3042.89.2 dated 2022-06-17
DESCRIPTION | 14 - MD5 | 41 ++--- NAMESPACE | 8 R/builtin-glGld.R | 14 - R/builtin-gmmGmm.R | 183 ++++++++++------------ R/dist-gldFit.R | 12 - R/dist-nig.R | 10 - R/gui-stylizedFacts.R | 4 R/matrix-posDefinite.R | 2 R/plot.R | 44 ++--- R/stats-interpAkima.R | 18 -- R/stats-interpLinear.R | 24 -- R/test-correlationTest.R | 254 +++++++++++++++---------------- R/test-fHTEST.R | 2 R/test-normalityTest.R | 22 +- inst/unitTests/runit.JarqueBeraPValues.R | 2 inst/unitTests/runit.NormalityTests.R | 4 man/stats-interpAkima.Rd | 3 man/stats-interpLinear.Rd | 2 src/gld.c | 12 - src/init.c |only src/nig.c | 18 +- 22 files changed, 337 insertions(+), 356 deletions(-)
Title: Adaptive Trial Simulator
Description: Package that simulates adaptive clinical trials using adaptive
stopping, adaptive arm dropping, and/or adaptive randomisation.
Developed as part of the INCEPT (Intensive Care Platform Trial) project
(<https://incept.dk/>), which is primarily supported by a grant
from Sygeforsikringen "danmark" (<https://www.sygeforsikring.dk/>).
Author: Anders Granholm [aut, cre] ,
Benjamin Skov Kaas-Hansen [aut]
,
Aksel Karl Georg Jensen [ctb] ,
Theis Lange [ctb]
Maintainer: Anders Granholm <andersgran@gmail.com>
Diff between adaptr versions 1.0.0 dated 2022-03-15 and 1.1.0 dated 2022-06-17
DESCRIPTION | 10 MD5 | 113 +- NEWS.md | 21 R/adaptr-package.R | 30 R/extract_results.R | 519 +++++----- R/get_ys_and_draws.R | 20 R/plot_history.R | 6 R/plot_status.R | 400 +++---- R/print.R | 652 ++++++------ R/prob_funs.R | 408 +++---- R/run_trial.R | 28 R/run_trials.R | 77 - R/setup_trial.R | 76 - R/summary.R | 375 +++---- R/utils.R | 445 ++++---- R/zzz.R | 82 - README.md | 53 - build/partial.rdb |binary inst/CITATION |only inst/doc/Advanced-example.Rmd | 814 ++++++++------- inst/doc/Advanced-example.html | 7 inst/doc/Basic-examples.html | 1 inst/doc/Overview.R | 1 inst/doc/Overview.Rmd | 9 inst/doc/Overview.html | 87 - man/adaptr-package.Rd | 28 man/cat0.Rd | 4 man/dispatch_trial_runs.Rd | 14 man/extract_history.Rd | 2 man/extract_results.Rd | 21 man/extract_statuses.Rd | 2 man/get_draws_binom.Rd | 6 man/get_draws_generic.Rd | 10 man/get_draws_norm.Rd | 6 man/get_ys_binom.Rd | 4 man/get_ys_norm.Rd | 6 man/plot_history.Rd | 7 man/plot_status.Rd | 5 man/print.Rd | 26 man/prob_all_equi.Rd | 6 man/prob_best.Rd | 10 man/prob_better.Rd | 18 man/prog_breaks.Rd | 8 man/reallocate_probs.Rd | 8 man/run_trial.Rd | 28 man/run_trials.Rd | 62 - man/setup_trial.Rd | 47 man/setup_trial_binom.Rd | 20 man/setup_trial_norm.Rd | 26 man/summary.Rd | 28 man/validate_trial.Rd | 15 tests/testthat/_snaps/extract.md | 1688 ++++++++++++++++----------------- tests/testthat/_snaps/plot_status.md | 316 +++--- tests/testthat/_snaps/run_trials.md | 610 +++++------ tests/testthat/_snaps/setup_trial.md | 232 ++-- tests/testthat/_snaps/summary-print.md | 326 +++--- vignettes/Advanced-example.Rmd | 814 ++++++++------- vignettes/Overview.Rmd | 9 58 files changed, 4390 insertions(+), 4256 deletions(-)
Title: Non-Negative Tensor Decomposition
Description: Some functions for performing non-negative matrix factorization, non-negative CANDECOMP/PARAFAC (CP) decomposition, non-negative Tucker decomposition, and generating toy model data. See Andrzej Cichock et al (2009) <doi:10.1002/9780470747278> and the reference section of GitHub README.md <https://github.com/rikenbit/nnTensor>, for details of the methods.
Author: Koki Tsuyuzaki [aut, cre],
Manabu Ishii [aut],
Itoshi Nikaido [aut]
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Diff between nnTensor versions 1.1.6 dated 2022-05-02 and 1.1.7 dated 2022-06-17
nnTensor-1.1.6/nnTensor/tests/testthat/_snaps |only nnTensor-1.1.7/nnTensor/DESCRIPTION | 8 +-- nnTensor-1.1.7/nnTensor/MD5 | 20 ++++---- nnTensor-1.1.7/nnTensor/R/NMF.R | 59 +++++++++++++++++--------- nnTensor-1.1.7/nnTensor/R/NTD.R | 2 nnTensor-1.1.7/nnTensor/R/NTF.R | 2 nnTensor-1.1.7/nnTensor/R/jNMF.R | 6 +- nnTensor-1.1.7/nnTensor/R/nnTensor-internal.R | 15 ++++++ nnTensor-1.1.7/nnTensor/R/siNMF.R | 4 - nnTensor-1.1.7/nnTensor/README.md | 2 nnTensor-1.1.7/nnTensor/build/partial.rdb |binary nnTensor-1.1.7/nnTensor/inst/NEWS | 4 + 12 files changed, 80 insertions(+), 42 deletions(-)
More information about MakeYourPalette at CRAN
Permanent link
Title: A Test Environment for Database Requests
Description: Testing and documenting code that communicates with remote
databases can be painful. Although the interaction with R is usually relatively
simple (e.g. data(frames) passed to and from a database), because they rely on
a separate service and the data there, testing them can be difficult to set up,
unsustainable in a continuous integration environment, or impossible without
replicating an entire production cluster. This package addresses that by
allowing you to make recordings from your database interactions and then play
them back while testing (or in other contexts) all without needing to spin up
or have access to the database your code would typically connect to.
Author: Jonathan Keane [aut, cre] ,
Mauricio Vargas [aut] ,
Helen Miller [rev] ,
Etienne Racine [rev]
Maintainer: Jonathan Keane <jkeane@gmail.com>
Diff between dittodb versions 0.1.3 dated 2020-10-10 and 0.1.4 dated 2022-06-17
dittodb-0.1.3/dittodb/inst/doc/travelling.R |only dittodb-0.1.3/dittodb/inst/doc/travelling.Rmd |only dittodb-0.1.3/dittodb/inst/doc/travelling.html |only dittodb-0.1.3/dittodb/vignettes/travelling |only dittodb-0.1.3/dittodb/vignettes/travelling.Rmd |only dittodb-0.1.4/dittodb/DESCRIPTION | 17 dittodb-0.1.4/dittodb/MD5 | 61 - dittodb-0.1.4/dittodb/NAMESPACE | 8 dittodb-0.1.4/dittodb/NEWS.md | 4 dittodb-0.1.4/dittodb/R/capture-requests.R | 38 dittodb-0.1.4/dittodb/R/dbListTables-Fields.R | 2 dittodb-0.1.4/dittodb/R/dbQueries-Results.R | 90 +- dittodb-0.1.4/dittodb/R/mock-db.R | 1 dittodb-0.1.4/dittodb/R/paths.R | 14 dittodb-0.1.4/dittodb/R/quote.R | 36 dittodb-0.1.4/dittodb/R/transactions.R |only dittodb-0.1.4/dittodb/R/utils.R | 11 dittodb-0.1.4/dittodb/README.md | 10 dittodb-0.1.4/dittodb/build/vignette.rds |binary dittodb-0.1.4/dittodb/inst/doc/developing-dittodb.Rmd | 2 dittodb-0.1.4/dittodb/inst/doc/developing-dittodb.html | 139 ++- dittodb-0.1.4/dittodb/inst/doc/dittodb.R | 4 dittodb-0.1.4/dittodb/inst/doc/dittodb.Rmd | 13 dittodb-0.1.4/dittodb/inst/doc/dittodb.html | 438 +++++----- dittodb-0.1.4/dittodb/inst/doc/nycflights.html | 33 dittodb-0.1.4/dittodb/man/clean_statement.Rd |only dittodb-0.1.4/dittodb/man/expect_sql.Rd | 2 dittodb-0.1.4/dittodb/man/mock-db-methods.Rd | 33 dittodb-0.1.4/dittodb/tests/testthat/test-dbi-generic-integration.R | 270 +++--- dittodb-0.1.4/dittodb/tests/testthat/test-dbplyr-integration.R | 6 dittodb-0.1.4/dittodb/tests/testthat/test-quote.R |only dittodb-0.1.4/dittodb/tests/testthat/test-transactions.R |only dittodb-0.1.4/dittodb/tests/testthat/test-verbosity.R | 17 dittodb-0.1.4/dittodb/vignettes/developing-dittodb.Rmd | 2 dittodb-0.1.4/dittodb/vignettes/dittodb.Rmd | 13 35 files changed, 816 insertions(+), 448 deletions(-)
Title: Varying Coefficient Meta-Analysis
Description: Implements functions for varying coefficient meta-analysis methods.
These methods do not assume effect size homogeneity. Subgroup effect size
comparisons, general linear effect size contrasts, and linear models of
effect sizes based on varying coefficient methods can be used to describe
effect size heterogeneity. Varying coefficient meta-analysis methods do not
require the unrealistic assumptions of the traditional fixed-effect and
random-effects meta-analysis methods.
For details see: Statistical Methods for Psychologists, Volume 5, <https://dgbonett.sites.ucsc.edu/>.
Author: Douglas G. Bonett [aut, cre],
Robert J. Calin-Jageman [ctb]
Maintainer: Douglas G. Bonett <dgbonett@ucsc.edu>
Diff between vcmeta versions 1.0.0 dated 2021-08-21 and 1.1.0 dated 2022-06-17
DESCRIPTION | 17 - MD5 | 201 +++++++++--------- NAMESPACE | 217 ++++++++++---------- NEWS.md |only R/meta_ave.R | 256 +++++++++++++++-------- R/meta_comp.R | 146 ++++++------- R/meta_misc.R | 63 +++++ R/meta_model.R | 145 +++++++------ R/meta_plots.R | 2 R/meta_rep.R | 427 +++++++++++++++++++++++++++++++++------- R/meta_se.R | 248 ++++++++++++++++------- README.md |only build/partial.rdb |binary inst/REFERENCES.bib | 16 + man/ci.fisher.Rd | 74 +++--- man/cor.from.t.Rd | 76 +++---- man/meta.ave.agree.Rd | 108 +++++----- man/meta.ave.cor.Rd | 110 +++++----- man/meta.ave.cronbach.Rd | 106 ++++----- man/meta.ave.gen.Rd | 104 ++++----- man/meta.ave.gen.cc.Rd | 123 +++++------ man/meta.ave.gen.rc.Rd | 142 ++++++------- man/meta.ave.mean.ps.Rd | 130 ++++++------ man/meta.ave.mean2.Rd | 126 +++++------ man/meta.ave.meanratio.ps.Rd | 144 ++++++------- man/meta.ave.meanratio2.Rd | 138 ++++++------ man/meta.ave.odds.Rd | 134 ++++++------ man/meta.ave.path.Rd | 110 +++++----- man/meta.ave.pbcor.Rd | 146 ++++++------- man/meta.ave.plot.Rd | 158 +++++++------- man/meta.ave.prop.ps.Rd | 112 +++++----- man/meta.ave.prop2.Rd | 116 +++++----- man/meta.ave.propratio2.Rd | 134 ++++++------ man/meta.ave.semipart.Rd | 100 ++++----- man/meta.ave.slope.Rd | 112 +++++----- man/meta.ave.spear.Rd | 108 +++++----- man/meta.ave.stdmean.ps.Rd | 136 ++++++------ man/meta.ave.stdmean2.Rd | 142 ++++++------- man/meta.ave.var.Rd |only man/meta.chitest.Rd |only man/meta.lc.agree.Rd | 102 ++++----- man/meta.lc.gen.Rd | 84 +++---- man/meta.lc.mean.ps.Rd | 126 +++++------ man/meta.lc.mean1.Rd | 114 +++++----- man/meta.lc.mean2.Rd | 126 +++++------ man/meta.lc.meanratio.ps.Rd | 136 ++++++------ man/meta.lc.meanratio2.Rd | 136 ++++++------ man/meta.lc.odds.Rd | 106 ++++----- man/meta.lc.prop.ps.Rd | 108 +++++----- man/meta.lc.prop1.Rd | 92 ++++---- man/meta.lc.prop2.Rd | 104 ++++----- man/meta.lc.propratio2.Rd | 108 +++++----- man/meta.lc.stdmean.ps.Rd | 134 ++++++------ man/meta.lc.stdmean2.Rd | 144 ++++++------- man/meta.lm.agree.Rd | 114 +++++----- man/meta.lm.cor.Rd | 112 +++++----- man/meta.lm.cor.gen.Rd | 112 +++++----- man/meta.lm.cronbach.Rd | 112 +++++----- man/meta.lm.gen.Rd | 102 ++++----- man/meta.lm.mean.ps.Rd | 130 ++++++------ man/meta.lm.mean1.Rd | 110 +++++----- man/meta.lm.mean2.Rd | 134 ++++++------ man/meta.lm.meanratio.ps.Rd | 134 ++++++------ man/meta.lm.meanratio2.Rd | 134 ++++++------ man/meta.lm.odds.Rd | 140 ++++++------- man/meta.lm.prop.ps.Rd | 122 +++++------ man/meta.lm.prop1.Rd | 98 ++++----- man/meta.lm.prop2.Rd | 120 +++++------ man/meta.lm.propratio2.Rd | 140 ++++++------- man/meta.lm.semipart.Rd | 112 +++++----- man/meta.lm.spear.Rd | 108 +++++----- man/meta.lm.stdmean.ps.Rd | 142 ++++++------- man/meta.lm.stdmean2.Rd | 142 ++++++------- man/meta.sub.cor.Rd | 130 ++++++------ man/meta.sub.cronbach.Rd | 132 ++++++------ man/meta.sub.pbcor.Rd | 166 +++++++-------- man/meta.sub.semipart.Rd | 124 +++++------ man/meta.sub.spear.Rd | 124 +++++------ man/replicate.cor.Rd | 8 man/replicate.gen.Rd | 8 man/replicate.mean.ps.Rd | 24 +- man/replicate.mean2.Rd | 20 - man/replicate.oddsratio.Rd |only man/replicate.plot.Rd | 256 +++++++++++------------ man/replicate.prop2.Rd |only man/replicate.slope.Rd |only man/replicate.stdmean.ps.Rd | 29 +- man/replicate.stdmean2.Rd | 20 - man/se.cor.Rd | 86 ++++---- man/se.mean.ps.Rd | 97 ++++----- man/se.mean2.Rd | 97 ++++----- man/se.meanratio.ps.Rd | 102 ++++----- man/se.meanratio2.Rd | 103 ++++----- man/se.odds.Rd | 94 ++++---- man/se.pbcor.Rd | 120 +++++------ man/se.prop.ps.Rd |only man/se.prop2.Rd |only man/se.semipartial.Rd | 82 +++---- man/se.slope.Rd | 88 ++++---- man/se.spear.Rd | 80 +++---- man/se.stdmean.ps.Rd | 107 ++++------ man/se.stdmean2.Rd | 116 +++++----- tests/testthat/test_meta_ave.R | 13 + tests/testthat/test_meta_misc.R | 12 + tests/testthat/test_meta_rep.R | 34 +++ tests/testthat/test_meta_se.R | 20 + 106 files changed, 5751 insertions(+), 5106 deletions(-)
Title: Download and Tidy Data from the Reserve Bank of Australia
Description: Download up-to-date data from the Reserve Bank of Australia
in a tidy data frame. Package includes functions to download current and
historical statistical tables
(<https://www.rba.gov.au/statistics/tables/>) and forecasts
(<https://www.rba.gov.au/publications/smp/forecasts-archive.html>). Data
includes a broad range of Australian macroeconomic and financial time
series.
Author: Matt Cowgill [aut, cre] ,
Angus Moore [ctb]
Maintainer: Matt Cowgill <mattcowgill@gmail.com>
Diff between readrba versions 0.1.2 dated 2021-10-01 and 0.1.3 dated 2022-06-17
DESCRIPTION | 8 MD5 | 36 +-- NEWS.md | 4 R/load_rba_sheet.R | 52 ++++ R/sysdata.rda |binary R/utils-pipe.R | 2 README.md | 246 +++++++++++----------- build/vignette.rds |binary inst/doc/readrba.R | 35 +++ inst/doc/readrba.Rmd | 40 +++ inst/doc/readrba.html | 342 +++++++++++++++++++++++++++---- man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/pipe.Rd | 2 man/read_excel_noguess.Rd |only man/readrba-package.Rd | 10 man/rename_excel.Rd |only tests/testthat/test-check_if_rba_ts.R | 2 tests/testthat/test-download_rba.R | 4 vignettes/readrba.Rmd | 40 +++ 20 files changed, 626 insertions(+), 197 deletions(-)
Title: Geographically-Weighted Models
Description: Techniques from a particular branch of spatial statistics,termed geographically-weighted (GW) models. GW models suit situations when data are not described well by some global model, but where there are spatial regions where a suitably localised calibration provides a better description. 'GWmodel' includes functions to calibrate: GW summary statistics (Brunsdon et al., 2002)<doi: 10.1016/s0198-9715(01)00009-6>, GW principal components analysis (Harris et al., 2011)<doi: 10.1080/13658816.2011.554838>, GW discriminant analysis (Brunsdon et al., 2007)<doi: 10.1111/j.1538-4632.2007.00709.x> and various forms of GW regression (Brunsdon et al., 1996)<doi: 10.1111/j.1538-4632.1996.tb00936.x>; some of which are provided in basic and robust (outlier resistant) forms.
Author: Binbin Lu[aut], Paul Harris[aut], Martin Charlton[aut], Chris Brunsdon[aut], Tomoki Nakaya[aut], Daisuke Murakami[aut],Isabella Gollini[ctb], Yigong Hu[ctb], Fiona H Evans[ctb]
Maintainer: Binbin Lu <binbinlu@whu.edu.cn>
Diff between GWmodel versions 2.2-8 dated 2021-10-09 and 2.2-9 dated 2022-06-17
DESCRIPTION | 8 - MD5 | 42 ++++---- NAMESPACE | 2 R/BootstrapGWR.r | 8 - R/GeneralizedGWR.r | 6 - R/LocalsummaryStatistics.r | 2 R/collinearity.r | 3 R/gtwr.R | 226 +++++++++++---------------------------------- R/gw.weight.r | 2 R/gwda.r | 2 R/gwpca.r | 2 R/gwr.basic.r | 2 R/gwr.mixed.r | 2 R/gwr.multiscale.R | 6 - R/gwr.predict.r | 2 R/gwr.scalable.r | 4 R/writeGWR.r | 8 - R/zzz.r | 2 build/partial.rdb |binary man/GWmodel-package.Rd | 7 - man/gtwr.Rd | 3 man/st.dist.Rd | 2 22 files changed, 115 insertions(+), 226 deletions(-)
Title: Flexible Parametric Cure Models
Description: Flexible parametric mixture and non-mixture cure models for time-to-event data.
Author: Jordan Amdahl [aut, cre]
Maintainer: Jordan Amdahl <jrdnmdhl@gmail.com>
Diff between flexsurvcure versions 1.2.0 dated 2020-08-25 and 1.3.0 dated 2022-06-17
DESCRIPTION | 13 +-- MD5 | 22 +++-- NAMESPACE | 5 - NEWS.md | 3 R/aaa.R | 4 - R/flexsurvcure.R | 4 - R/helper.r |only R/mixture.r | 57 ++++++++++---- R/nonmixture.R | 49 ++++++++---- build/vignette.rds |binary inst/doc/flexsurvcure.html | 136 +++++++++++++++++++++++------------ tests/testthat/test_surv_funcs.R | 51 ++++++++++++- tests/testthat/testthat-problems.rds |only 13 files changed, 240 insertions(+), 104 deletions(-)
Title: Comparison of Survival Curves Between Two Groups
Description: Various statistical methods for survival analysis in comparing survival curves between two groups, including overall hypothesis tests described in Li et al. (2015) <doi:10.1371/journal.pone.0116774> and Huang et al. (2020) <doi:10.1080/03610918.2020.1753075>, fixed-point tests in Klein et al. (2007) <doi:10.1002/sim.2864>, short-term tests, and long-term tests in Logan et al. (2008) <doi:10.1111/j.1541-0420.2007.00975.x>. Some commonly used descriptive statistics and plots are also included.
Author: Jingjing Lyu [aut],
Zheng Chen [cre],
Huimin Li [ctb],
Jinbao Chen [ctb],
Xinghui Huang [ctb]
Maintainer: Zheng Chen <zheng-chen@hotmail.com>
Diff between ComparisonSurv versions 1.0.9 dated 2020-05-18 and 1.1.0 dated 2022-06-17
DESCRIPTION | 18 +++--- MD5 | 20 +++--- R/ComparisonSurv.R | 125 ++++++++++++++++++++++++++---------------- data/Crossdata.rda |binary data/PHdata.rda |binary man/ComparisonSurv-package.Rd | 8 +- man/Descriptive.stat.Rd | 22 ++++--- man/Long.test.Rd | 6 +- man/Overall.test.Rd | 2 man/Short.test.Rd | 6 +- man/Survival.plot.Rd | 21 +------ 11 files changed, 128 insertions(+), 100 deletions(-)
More information about ComparisonSurv at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-12 0.99.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-07 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-26 2015.6.25
2013-09-24 2013.9-1
2012-04-10 2012.04-1
2008-03-02 1.2.2
2007-09-27 1.2.1
2005-10-07 1.2