Title: Random Forest Cluster Analysis
Description: Tools to perform random forest consensus clustering of different data types. The package is designed to accept a list of matrices from different assays, typically from high-throughput molecular profiling so that class discovery may be jointly performed. For references, please see Tao Shi & Steve Horvath (2006) <doi:10.1198/106186006X94072> & Monti et al (2003) <doi:10.1023/A:1023949509487> .
Author: Ankur Chakravarthy, PhD
Maintainer: Ankur Chakravarthy <ankur.chakravarthy.10@ucl.ac.uk>
Diff between RFclust versions 0.1.1 dated 2021-06-02 and 0.1.2 dated 2022-06-20
DESCRIPTION | 9 +++++---- MD5 | 7 +++++-- data |only man/RFCluster.Rd | 3 +-- man/gbm.Rd |only 5 files changed, 11 insertions(+), 8 deletions(-)
Title: Occurrence Filtering, Geographic and Taxonomic Standardization
and Generation of Species Range Polygons
Description: Provides tools for filtering occurrence records, generating alpha-hull-derived range polygons and mapping species distributions.
Author: Pascal Title [aut, cre]
Maintainer: Pascal Title <ptitle@umich.edu>
Diff between rangeBuilder versions 1.5 dated 2019-12-10 and 1.6 dated 2022-06-20
rangeBuilder-1.5/rangeBuilder/ChangeLog |only rangeBuilder-1.5/rangeBuilder/LICENSE.note |only rangeBuilder-1.5/rangeBuilder/R/acceptedAndSynonyms.R |only rangeBuilder-1.5/rangeBuilder/R/nonSquamates.R |only rangeBuilder-1.5/rangeBuilder/R/repDBfunctions.R |only rangeBuilder-1.5/rangeBuilder/man/acceptedAndSynonyms.Rd |only rangeBuilder-1.5/rangeBuilder/man/rangeBuilder-data.Rd |only rangeBuilder-1.5/rangeBuilder/man/rangeBuilder-package.Rd |only rangeBuilder-1.5/rangeBuilder/man/reptileDatabaseCountries.Rd |only rangeBuilder-1.6/rangeBuilder/DESCRIPTION | 25 rangeBuilder-1.6/rangeBuilder/MD5 | 92 +- rangeBuilder-1.6/rangeBuilder/NAMESPACE | 56 - rangeBuilder-1.6/rangeBuilder/R/RcppExports.R | 2 rangeBuilder-1.6/rangeBuilder/R/addRasterLegend.R | 147 +++ rangeBuilder-1.6/rangeBuilder/R/closestCountry.R | 31 rangeBuilder-1.6/rangeBuilder/R/coordError.R | 48 + rangeBuilder-1.6/rangeBuilder/R/downloadDates.R | 15 rangeBuilder-1.6/rangeBuilder/R/exampleData.R |only rangeBuilder-1.6/rangeBuilder/R/filterByLand.R | 30 rangeBuilder-1.6/rangeBuilder/R/filterByProximity.R | 35 rangeBuilder-1.6/rangeBuilder/R/flipSign.R | 44 + rangeBuilder-1.6/rangeBuilder/R/getAcceptedFromSynonym.R |only rangeBuilder-1.6/rangeBuilder/R/getAcceptedNames.R |only rangeBuilder-1.6/rangeBuilder/R/getAllCountries.R |only rangeBuilder-1.6/rangeBuilder/R/getCountryFromSpecies.R |only rangeBuilder-1.6/rangeBuilder/R/getDynamicAlphaHull.R | 180 +++- rangeBuilder-1.6/rangeBuilder/R/getExtentOfList.R | 26 rangeBuilder-1.6/rangeBuilder/R/getSpCoordRange.R |only rangeBuilder-1.6/rangeBuilder/R/getSpFromCountry.R |only rangeBuilder-1.6/rangeBuilder/R/getSynonymsFromAccepted.R |only rangeBuilder-1.6/rangeBuilder/R/queryGISD.R | 32 rangeBuilder-1.6/rangeBuilder/R/rangeBuilder-package.R |only rangeBuilder-1.6/rangeBuilder/R/rasterStackFromPolyList.R | 76 + rangeBuilder-1.6/rangeBuilder/R/standardizeCountry.R | 46 + rangeBuilder-1.6/rangeBuilder/R/synonymMatch.R | 399 +++++++++- rangeBuilder-1.6/rangeBuilder/R/sysdata.rda |binary rangeBuilder-1.6/rangeBuilder/R/transparentColor.R | 20 rangeBuilder-1.6/rangeBuilder/man/addRasterLegend.Rd | 209 ++--- rangeBuilder-1.6/rangeBuilder/man/closestCountry.Rd | 57 - rangeBuilder-1.6/rangeBuilder/man/coordError.Rd | 55 - rangeBuilder-1.6/rangeBuilder/man/downloadDates.Rd | 27 rangeBuilder-1.6/rangeBuilder/man/filterByLand.Rd | 46 - rangeBuilder-1.6/rangeBuilder/man/filterByProximity.Rd | 57 - rangeBuilder-1.6/rangeBuilder/man/flipSign.Rd | 80 -- rangeBuilder-1.6/rangeBuilder/man/getAcceptedFromSynonym.Rd |only rangeBuilder-1.6/rangeBuilder/man/getAcceptedNames.Rd |only rangeBuilder-1.6/rangeBuilder/man/getAllCountries.Rd |only rangeBuilder-1.6/rangeBuilder/man/getCountryFromSpecies.Rd |only rangeBuilder-1.6/rangeBuilder/man/getDynamicAlphaHull.Rd | 136 +-- rangeBuilder-1.6/rangeBuilder/man/getExtentOfList.Rd | 26 rangeBuilder-1.6/rangeBuilder/man/getSpFromCountry.Rd |only rangeBuilder-1.6/rangeBuilder/man/getSynonymsFromAccepted.Rd |only rangeBuilder-1.6/rangeBuilder/man/queryGISD.Rd | 66 - rangeBuilder-1.6/rangeBuilder/man/rangeBuilder-example.Rd |only rangeBuilder-1.6/rangeBuilder/man/rangeBuilder.Rd |only rangeBuilder-1.6/rangeBuilder/man/rasterStackFromPolyList.Rd | 48 - rangeBuilder-1.6/rangeBuilder/man/standardizeCountry.Rd | 61 - rangeBuilder-1.6/rangeBuilder/man/synonymMatch.Rd | 178 ++-- rangeBuilder-1.6/rangeBuilder/man/transparentColor.Rd | 30 rangeBuilder-1.6/rangeBuilder/src/RcppExports.cpp | 5 60 files changed, 1650 insertions(+), 735 deletions(-)
Title: A GUI to Correct Measurement Bias in DNA Methylation Analyses
Description: A GUI to correct measurement bias in DNA methylation
analyses. The 'BiasCorrector' package just wraps the functions
implemented in the 'R' package 'rBiasCorrection' into a shiny web
application in order to make them more easily accessible. Publication:
Kapsner et al. (2021) <doi:10.1002/ijc.33681>.
Author: Lorenz A. Kapsner [cre, aut, cph]
,
Evgeny A. Moskalev [aut]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between BiasCorrector versions 0.2.1 dated 2022-02-16 and 0.2.2 dated 2022-06-20
BiasCorrector-0.2.1/BiasCorrector/README.md |only BiasCorrector-0.2.2/BiasCorrector/DESCRIPTION | 12 ++--- BiasCorrector-0.2.2/BiasCorrector/MD5 | 13 ++--- BiasCorrector-0.2.2/BiasCorrector/R/app_utils.R | 2 BiasCorrector-0.2.2/BiasCorrector/R/moduleFileupload.R | 6 +- BiasCorrector-0.2.2/BiasCorrector/R/type2Files.R | 2 BiasCorrector-0.2.2/BiasCorrector/inst/application/server.R | 22 +++++----- BiasCorrector-0.2.2/BiasCorrector/tests/testthat/test-lints.R | 1 8 files changed, 28 insertions(+), 30 deletions(-)
Title: Spatial Machine Learning
Description: Implements a spatial extension of the random forest algorithm
(Georganos et al. (2019) <doi:10.1080/10106049.2019.1595177>).
Allows for a geographically weighted random forest regression
including a function to find the optical bandwidth.
Author: Stamatis Kalogirou [aut, cre],
Stefanos Georganos [aut, ctb]
Maintainer: Stamatis Kalogirou <stamatis@lctools.science>
Diff between SpatialML versions 0.1.3 dated 2019-05-09 and 0.1.4 dated 2022-06-20
DESCRIPTION | 16 ++-- MD5 | 18 ++-- NAMESPACE | 3 R/grf.R | 190 ++++++++++++++++++++++++++++++++------------------- R/grf.bw.R |only R/predict.grf.R | 11 +- R/rf.mtry.optim.R |only man/Income.Rd | 10 +- man/grf.Rd | 36 ++++++--- man/grf.bw.Rd |only man/predict.grf.Rd | 8 +- man/rf.mtry.optim.Rd |only 12 files changed, 182 insertions(+), 110 deletions(-)
Title: Multivariate Product Distributions for Elliptically Contoured
Distributions
Description: Estimates multivariate subgaussian stable densities
and probabilities as well as generates random variates using product
distribution theory. A function for estimating the parameters from
data to fit a distribution to data is also provided, using the
method from Nolan (2013) <DOI:10.1007/s00180-013-0396-7>.
Author: Bruce Swihart [aut, cre]
Maintainer: Bruce Swihart <bruce.swihart@gmail.com>
Diff between mvpd versions 0.0.2 dated 2022-03-30 and 0.0.3 dated 2022-06-20
DESCRIPTION | 8 +++++--- MD5 | 13 +++++++------ NEWS.md | 5 +++++ R/fit_mvss.R | 25 ++++++++++++++----------- R/rmvss.R | 7 ++++--- man/fit_mvss.Rd | 25 ++++++++++++++----------- man/rmvss.Rd | 7 ++++--- tests/testthat/test-fit_mvss.R |only 8 files changed, 53 insertions(+), 37 deletions(-)
Title: Mapping 3D Data into CIELab Color Space
Description: Returns a data frame with the names of the input data points and hex colors (or CIELab coordinates). Data can be mapped to colors for use in data visualization. It optimally maps data points into a polygon that represents the CIELab colour space. Since Euclidean distance approximates relative perceptual differences in CIELab color space, the result is a color encoding that aims to capture much of the structure of the original data.
Author: Mikaela Koutrouli [aut, cre],
Lars Juhl Jensen [aut]
Maintainer: Mikaela Koutrouli <mikaela.koutrouli@cpr.ku.dk>
Diff between ucie versions 1.0.1 dated 2022-03-01 and 1.0.2 dated 2022-06-20
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 2 ++ NEWS.md | 4 +++- R/Data_transformations.R | 37 +++++++++++++++++++++++++++++++------ man/ucie.Rd | 33 +++++++++++++++++++++++++-------- 6 files changed, 70 insertions(+), 24 deletions(-)
Title: Deep Gaussian Processes using MCMC
Description: Performs posterior inference for deep Gaussian processes following
Sauer, Gramacy, and Higdon (2020) <arXiv:2012.08015>. Models are trained through
MCMC including elliptical slice sampling of latent Gaussian layers and Metropolis-Hastings
sampling of kernel hyperparameters. Vecchia-approximation for faster computation is implemented
following Sauer, Cooper, and Gramacy (2022) <arXiv:2204.02904>. Downstream tasks include
sequential design through active learning Cohn/integrated mean squared error (ALC/IMSE; Sauer,
Gramacy, and Higdon, 2020) and optimization through expected improvement (EI;
Gramacy, Sauer, and Wycoff, 2021 <arXiv:2112.07457>). Models
extend up to three layers deep; a one layer model is equivalent to typical Gaussian
process regression. Covariance kernel options are matern (default) and squared
exponential. Applicable to both noisy and deterministic functions.
Incorporates SNOW parallelization and utilizes C and C++ under the hood.
Author: Annie Sauer <anniees@vt.edu>
Maintainer: Annie Sauer <anniees@vt.edu>
Diff between deepgp versions 1.0.0 dated 2022-04-08 and 1.0.1 dated 2022-06-20
DESCRIPTION | 10 +++++----- MD5 | 32 ++++++++++++++++---------------- R/RcppExports.R | 4 ++++ R/checks.R | 31 +------------------------------ R/fit.R | 35 +++++++++++++++++++++++++++++------ R/gibbs.R | 9 +++------ R/gibbs_vecchia.R | 9 +++------ R/mcmc.R | 18 +++++++----------- R/mcmc_vecchia.R | 8 ++++---- R/plot.R | 38 +++++++++++++++++++------------------- README.md | 6 +++++- man/fit_one_layer.Rd | 7 +++++++ man/fit_three_layer.Rd | 14 +++++++++++--- man/fit_two_layer.Rd | 11 ++++++++--- man/plot.Rd | 2 +- src/RcppExports.cpp | 17 ++++++++++++++--- src/cov.cpp | 13 +++++++++++-- 17 files changed, 148 insertions(+), 116 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-10 0.97
2014-04-22 0.96
2010-11-03 0.95
2009-06-24 0.94
2009-05-08 0.93
2009-04-14 0.91
2008-08-06 0.90
2008-04-20 0.86
2008-02-24 0.8
2007-06-16 0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-23 1.0
Title: Correct Bias in DNA Methylation Analyses
Description: Implementation of the algorithms (with minor modifications)
to correct bias in quantitative DNA methylation analyses as described
by Moskalev et al. (2011) <doi:10.1093/nar/gkr213>. Publication:
Kapsner et al. (2021) <doi:10.1002/ijc.33681>.
Author: Lorenz A. Kapsner [cre, aut, cph]
,
Evgeny A. Moskalev [aut]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between rBiasCorrection versions 0.3.3 dated 2022-02-16 and 0.3.4 dated 2022-06-20
rBiasCorrection-0.3.3/rBiasCorrection/README.md |only rBiasCorrection-0.3.4/rBiasCorrection/DESCRIPTION | 8 rBiasCorrection-0.3.4/rBiasCorrection/MD5 | 63 - rBiasCorrection-0.3.4/rBiasCorrection/R/better_model.R | 24 rBiasCorrection-0.3.4/rBiasCorrection/R/biascorrection.R | 16 rBiasCorrection-0.3.4/rBiasCorrection/R/clean_dt.R | 10 rBiasCorrection-0.3.4/rBiasCorrection/R/create_agg_df.R | 18 rBiasCorrection-0.3.4/rBiasCorrection/R/create_exampleplot.R | 2 rBiasCorrection-0.3.4/rBiasCorrection/R/createbarerrorplots.R | 6 rBiasCorrection-0.3.4/rBiasCorrection/R/cubic.R | 5 rBiasCorrection-0.3.4/rBiasCorrection/R/hyperbolic.R | 8 rBiasCorrection-0.3.4/rBiasCorrection/R/solving_equations.R | 10 rBiasCorrection-0.3.4/rBiasCorrection/R/utils.R | 8 rBiasCorrection-0.3.4/rBiasCorrection/build/partial.rdb |binary rBiasCorrection-0.3.4/rBiasCorrection/build/vignette.rds |binary rBiasCorrection-0.3.4/rBiasCorrection/inst/doc/rBiasCorrection_benchmarking.html | 201 ++++ rBiasCorrection-0.3.4/rBiasCorrection/inst/doc/rBiasCorrection_howto.R | 21 rBiasCorrection-0.3.4/rBiasCorrection/inst/doc/rBiasCorrection_howto.Rmd | 21 rBiasCorrection-0.3.4/rBiasCorrection/inst/doc/rBiasCorrection_howto.html | 411 ++++++++-- rBiasCorrection-0.3.4/rBiasCorrection/man/biascorrection.Rd | 4 rBiasCorrection-0.3.4/rBiasCorrection/man/on_start.Rd | 4 rBiasCorrection-0.3.4/rBiasCorrection/tests/testthat/test-algorithm_minmax_FALSE.R | 8 rBiasCorrection-0.3.4/rBiasCorrection/tests/testthat/test-algorithm_minmax_FALSE_re.R | 8 rBiasCorrection-0.3.4/rBiasCorrection/tests/testthat/test-algorithm_minmax_TRUE.R | 8 rBiasCorrection-0.3.4/rBiasCorrection/tests/testthat/test-algorithm_minmax_TRUE_re.R | 8 rBiasCorrection-0.3.4/rBiasCorrection/tests/testthat/test-biascorrection.R | 6 rBiasCorrection-0.3.4/rBiasCorrection/tests/testthat/test-clean_dt.R | 6 rBiasCorrection-0.3.4/rBiasCorrection/tests/testthat/test-create_aggregated.R | 2 rBiasCorrection-0.3.4/rBiasCorrection/tests/testthat/test-hyperbolic.R | 2 rBiasCorrection-0.3.4/rBiasCorrection/tests/testthat/test-lints.R | 2 rBiasCorrection-0.3.4/rBiasCorrection/tests/testthat/test-plotting.R | 2 rBiasCorrection-0.3.4/rBiasCorrection/tests/testthat/test-utils.R | 2 rBiasCorrection-0.3.4/rBiasCorrection/vignettes/rBiasCorrection_howto.Rmd | 21 33 files changed, 712 insertions(+), 203 deletions(-)
More information about rBiasCorrection at CRAN
Permanent link
Title: File-System Toolbox for RAVE Project
Description: Includes multiple cross-platform read/write interfaces for
'RAVE' project. 'RAVE' stands for "R analysis and visualization of human
intracranial electroencephalography data". The whole project aims at
providing powerful free-source package that analyze brain recordings from
patients with electrodes placed on the cortical surface or inserted into
the brain. 'raveio' as part of this project provides tools to read/write
neurophysiology data from/to 'RAVE' file structure, as well as several
popular formats including 'EDF(+)', 'Matlab', 'BIDS-iEEG', and 'HDF5',
etc. Documentation and examples about 'RAVE' project are provided at
<https://openwetware.org/wiki/RAVE>, and the paper by John F. Magnotti,
Zhengjia Wang, Michael S. Beauchamp (2020)
<doi:10.1016/j.neuroimage.2020.117341>; see 'citation("raveio")' for
details.
Author: Zhengjia Wang [aut, cre],
Beauchamp lab [cph, fnd]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between raveio versions 0.0.6 dated 2022-05-30 and 0.0.7 dated 2022-06-20
DESCRIPTION | 6 +- MD5 | 55 +++++++++++++++++++-------- NAMESPACE | 3 + NEWS.md | 9 ++++ R/class-pipeline_tools.R |only R/module-create.R |only R/pipeline-docs.R | 3 + R/pipeline-install.R | 32 ++++++++++++++- R/pipeline-knitr.R | 7 +++ R/pipeline-tools.R | 45 ++++++++++++++++------ R/rave-meta.R | 10 +++- R/units.R | 3 - R/zzz.R | 45 ++++++++++++++++++---- inst/rave-modules |only inst/rave-pipelines/template-r/DESCRIPTION | 8 --- inst/rave-pipelines/template-r/R |only inst/rave-pipelines/template-rmd-bare |only inst/rave-pipelines/template-rmd/DESCRIPTION | 8 --- inst/rave-pipelines/template-rmd/R |only inst/rave-pipelines/template-rmd/main.Rmd | 26 ++++++++++++ inst/rstudio |only man/PipelineTools.Rd |only man/import_electrode_table.Rd | 5 +- man/module_add.Rd |only man/pipeline.Rd |only man/rave-pipeline.Rd | 23 ++++++++--- 26 files changed, 224 insertions(+), 64 deletions(-)
Title: Isolation Forest-Based Presence-Only Species Distribution
Modeling
Description: Collection of R functions to do purely presence-only species
distribution modeling with isolation forest (iForest) and its
variations such as Extended isolation forest and SCiForest. See the
details of these methods in references: Liu, F.T., Ting, K.M. and
Zhou, Z.H. (2008) <doi:10.1109/ICDM.2008.17>, Hariri, S., Kind, M.C.
and Brunner, R.J. (2019) <doi:10.1109/TKDE.2019.2947676>, Liu, F.T.,
Ting, K.M. and Zhou, Z.H. (2010) <doi:10.1007/978-3-642-15883-4_18>,
Guha, S., Mishra, N., Roy, G. and Schrijvers, O. (2016)
<https://proceedings.mlr.press/v48/guha16.html>, Cortes, D. (2021)
<arXiv:2110.13402>. Additionally, Shapley values are used to explain
model inputs and outputs. See details in references: Shapley, L.S.
(1953) <doi:10.1515/9781400881970-018>, Lundberg, S.M. and Lee, S.I.
(2017) <https://dl.acm.org/doi/abs/10.5555/3295222.3295230>, Molnar,
C. (2020) <ISBN:978-0-244-76852-2>, Å trumbelj, E. and Kononenko, I.
(2014) <doi:10.1007/s10115-013-0679-x>. itsdm also provides functions
to diagnose variable response, analyze variable importance, draw
spatial dependence of variables and examine variable contribution. As
utilities, the package includes a few functions to download
bioclimatic variables including 'WorldClim' version 2.0 (see Fick,
S.E. and Hijmans, R.J. (2017) <doi:10.1002/joc.5086>) and
'CMCC-BioClimInd' (see Noce, S., Caporaso, L. and Santini, M. (2020)
<doi:10.1038/s41597-020-00726-5>.
Author: Lei Song [aut, cre] ,
Lyndon Estes [ths]
Maintainer: Lei Song <lsong@clarku.edu>
Diff between itsdm versions 0.1.1 dated 2022-01-11 and 0.1.2 dated 2022-06-20
itsdm-0.1.1/itsdm/inst/extdata/landcover_africa_10min.tif.aux.xml |only itsdm-0.1.1/itsdm/inst/extdata/wdpa_africa_10min.tif.aux.xml |only itsdm-0.1.2/itsdm/DESCRIPTION | 29 itsdm-0.1.2/itsdm/MD5 | 88 +-- itsdm-0.1.2/itsdm/NAMESPACE | 1 itsdm-0.1.2/itsdm/NEWS.md | 8 itsdm-0.1.2/itsdm/R/cmcc_bioclim.R | 2 itsdm-0.1.2/itsdm/R/evaluate_po.R | 8 itsdm-0.1.2/itsdm/R/future_cmcc_bioclim.R | 2 itsdm-0.1.2/itsdm/R/future_worldclim2.R | 2 itsdm-0.1.2/itsdm/R/plot.R | 4 itsdm-0.1.2/itsdm/R/print.R | 2 itsdm-0.1.2/itsdm/R/utils.R | 100 +++ itsdm-0.1.2/itsdm/R/worldclim2.R | 2 itsdm-0.1.2/itsdm/R/zzz.R | 26 itsdm-0.1.2/itsdm/README.md | 13 itsdm-0.1.2/itsdm/build/partial.rdb |binary itsdm-0.1.2/itsdm/build/vignette.rds |binary itsdm-0.1.2/itsdm/inst/doc/introduction_of_itsdm.Rmd | 74 +- itsdm-0.1.2/itsdm/inst/doc/introduction_of_itsdm.html | 102 +-- itsdm-0.1.2/itsdm/inst/doc/itsdm_example.Rmd | 265 ++++----- itsdm-0.1.2/itsdm/inst/doc/itsdm_example.html | 291 +++++----- itsdm-0.1.2/itsdm/vignettes/intro-evaluation-1.png |binary itsdm-0.1.2/itsdm/vignettes/intro-independent_responses-1.png |binary itsdm-0.1.2/itsdm/vignettes/intro-marginal_responses-1.png |binary itsdm-0.1.2/itsdm/vignettes/intro-pa-1.png |binary itsdm-0.1.2/itsdm/vignettes/intro-prediction-1.png |binary itsdm-0.1.2/itsdm/vignettes/intro-spatial_response-1.png |binary itsdm-0.1.2/itsdm/vignettes/intro-var_contrib-1.png |binary itsdm-0.1.2/itsdm/vignettes/intro-var_contrib_plot-1.png |binary itsdm-0.1.2/itsdm/vignettes/intro-var_inter_dependence-1.png |binary itsdm-0.1.2/itsdm/vignettes/intro-variable_analysis-1.png |binary itsdm-0.1.2/itsdm/vignettes/intro-variable_dependence-1.png |binary itsdm-0.1.2/itsdm/vignettes/introduction_of_itsdm.Rmd | 74 +- itsdm-0.1.2/itsdm/vignettes/itsdm-eval-1.png |binary itsdm-0.1.2/itsdm/vignettes/itsdm-independent_responses-1.png |binary itsdm-0.1.2/itsdm/vignettes/itsdm-marginal_responses-1.png |binary itsdm-0.1.2/itsdm/vignettes/itsdm-outliers-1.png |binary itsdm-0.1.2/itsdm/vignettes/itsdm-pa-1.png |binary itsdm-0.1.2/itsdm/vignettes/itsdm-prediction-1.png |binary itsdm-0.1.2/itsdm/vignettes/itsdm-var_contrib-1.png |binary itsdm-0.1.2/itsdm/vignettes/itsdm-var_contrib_general-1.png |binary itsdm-0.1.2/itsdm/vignettes/itsdm-var_inter_dependence-1.png |binary itsdm-0.1.2/itsdm/vignettes/itsdm-variable_dependence-1.png |binary itsdm-0.1.2/itsdm/vignettes/itsdm_example.Rmd | 265 ++++----- itsdm-0.1.2/itsdm/vignettes/itsdm_example.Rmd.orig | 15 46 files changed, 747 insertions(+), 626 deletions(-)
Title: Declare and Diagnose Research Designs
Description: Researchers can characterize and learn about the properties of
research designs before implementation using `DeclareDesign`. Ex ante
declaration and diagnosis of designs can help researchers clarify the
strengths and limitations of their designs and to improve their
properties, and can help readers evaluate a research strategy prior
to implementation and without access to results. It can also make it
easier for designs to be shared, replicated, and critiqued.
Author: Graeme Blair [aut, cre] ,
Jasper Cooper [aut] ,
Alexander Coppock [aut] ,
Macartan Humphreys [aut] ,
Neal Fultz [aut]
Maintainer: Graeme Blair <graeme.blair@gmail.com>
Diff between DeclareDesign versions 0.30.0 dated 2022-01-28 and 1.0.0 dated 2022-06-20
DeclareDesign-0.30.0/DeclareDesign/R/deprecated.R |only DeclareDesign-0.30.0/DeclareDesign/man/ourPkg-deprecated.Rd |only DeclareDesign-1.0.0/DeclareDesign/DESCRIPTION | 14 DeclareDesign-1.0.0/DeclareDesign/MD5 | 114 ++--- DeclareDesign-1.0.0/DeclareDesign/NAMESPACE | 1 DeclareDesign-1.0.0/DeclareDesign/NEWS.md | 6 DeclareDesign-1.0.0/DeclareDesign/R/DeclareDesign-deprecated.R |only DeclareDesign-1.0.0/DeclareDesign/R/compare_designs.R | 2 DeclareDesign-1.0.0/DeclareDesign/R/declare_assignment.R | 116 +++-- DeclareDesign-1.0.0/DeclareDesign/R/declare_estimator.R | 226 ++++++---- DeclareDesign-1.0.0/DeclareDesign/R/declare_inquiry.R | 81 ++- DeclareDesign-1.0.0/DeclareDesign/R/declare_measurement.R | 53 +- DeclareDesign-1.0.0/DeclareDesign/R/declare_model.R | 137 ++++-- DeclareDesign-1.0.0/DeclareDesign/R/declare_population.R | 45 - DeclareDesign-1.0.0/DeclareDesign/R/declare_potential_outcomes.R | 46 -- DeclareDesign-1.0.0/DeclareDesign/R/declare_reveal.R | 6 DeclareDesign-1.0.0/DeclareDesign/R/declare_sampling.R | 74 ++- DeclareDesign-1.0.0/DeclareDesign/R/declare_test.R | 8 DeclareDesign-1.0.0/DeclareDesign/R/design_helper_functions.R | 2 DeclareDesign-1.0.0/DeclareDesign/R/design_print_summary.R | 22 DeclareDesign-1.0.0/DeclareDesign/R/diagnose_design.R | 6 DeclareDesign-1.0.0/DeclareDesign/R/set_diagnosands.R | 2 DeclareDesign-1.0.0/DeclareDesign/R/tidy_try.R | 4 DeclareDesign-1.0.0/DeclareDesign/man/DeclareDesign-deprecated.Rd |only DeclareDesign-1.0.0/DeclareDesign/man/compare_functions.Rd | 2 DeclareDesign-1.0.0/DeclareDesign/man/declare_assignment.Rd | 108 +++- DeclareDesign-1.0.0/DeclareDesign/man/declare_estimator.Rd | 159 ++++--- DeclareDesign-1.0.0/DeclareDesign/man/declare_inquiry.Rd | 79 ++- DeclareDesign-1.0.0/DeclareDesign/man/declare_measurement.Rd | 53 +- DeclareDesign-1.0.0/DeclareDesign/man/declare_model.Rd | 137 ++++-- DeclareDesign-1.0.0/DeclareDesign/man/declare_population.Rd | 47 -- DeclareDesign-1.0.0/DeclareDesign/man/declare_potential_outcomes.Rd | 43 - DeclareDesign-1.0.0/DeclareDesign/man/declare_reveal.Rd | 7 DeclareDesign-1.0.0/DeclareDesign/man/declare_sampling.Rd | 72 ++- DeclareDesign-1.0.0/DeclareDesign/man/declare_test.Rd | 8 DeclareDesign-1.0.0/DeclareDesign/man/diagnose_design.Rd | 2 DeclareDesign-1.0.0/DeclareDesign/man/post_design.Rd | 2 DeclareDesign-1.0.0/DeclareDesign/man/set_diagnosands.Rd | 2 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-bootstrap-diagnosands.R | 4 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-compare-diagnoses.R | 2 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-continuous-pos.R | 2 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-demo.R | 2 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-deprecated.R | 34 + DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-describe_variable.R | 4 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-design-summary.R | 10 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-diagnosands.R | 19 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-diagnose-design.R | 64 +- DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-estimators.R | 36 - DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-factorial.R | 4 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-fanout.R | 4 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-get-estimates.R | 2 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-labels.R | 2 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-model-summary.R | 78 +-- DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-model.R | 54 +- DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-modify-design.R | 4 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-multiple-coefficients.R | 2 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-multiple-estimands-one-estimator.R | 2 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-multiple-estimators.R | 8 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-quick-design.R | 2 DeclareDesign-1.0.0/DeclareDesign/tests/testthat/test-reshape-diagnosis.R | 2 60 files changed, 1243 insertions(+), 784 deletions(-)
Title: Functions to Declare Missing Values
Description: A set of functions to declare labels and missing values, coupled
with associated functions to create (weighted) tables of frequencies and
various other summary measures.
Some of the base functions have been rewritten to make use of the specific
information about the missing values, most importantly to distinguish
between empty and declared missing values.
Many functions have a similar functionality with the corresponding ones from
packages "haven" and "labelled". The aim is to ensure as much compatibility
as possible with these packages, while offering an alternative in the
objects of class "declared".
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between declared versions 0.16 dated 2022-05-12 and 0.17 dated 2022-06-20
DESCRIPTION | 28 +- MD5 | 58 ++--- NAMESPACE | 6 R/declared.R | 360 ++++++---------------------------- R/haven.R | 77 ++----- R/internals.R | 286 ++++++++++++++------------- R/is_empty.R | 29 ++ R/labelled.R | 81 ++----- R/labels.R | 46 ++-- R/measurement.R |only R/missing.R | 69 ++++-- R/onLoad.R | 114 +++------- R/pillar.R | 66 ++---- R/print.R | 118 +++-------- R/vroom.R | 25 ++ R/w_mean.R | 44 ++-- R/w_median.R | 33 ++- R/w_mode.R | 35 ++- R/w_quantile.R | 46 ++-- R/w_sd.R | 25 ++ R/w_standardize.R | 33 ++- R/w_summary.R | 31 ++ R/w_table.R | 72 ++---- R/w_var.R | 43 ++-- inst/ChangeLog | 158 +++++++------- inst/doc/declared.pdf |binary inst/doc/why_the_package_declared.pdf |binary man/declared.Rd | 14 + man/declared_package.Rd | 14 - man/measurement.Rd |only man/weighted.Rd | 6 31 files changed, 875 insertions(+), 1042 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-18 0.3.5
2013-08-23 0.3.4
2013-06-25 0.3.3
2013-06-20 0.3.2
2013-06-12 0.3.1
2013-06-09 0.3
2013-04-17 0.2
2013-01-24 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-02 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-28 1.2.1
2015-01-11 1.2.0
2015-01-05 1.1.0
2014-12-22 1.0.0
2014-12-09 0.99.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-16 0.1.1
2013-09-11 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-20 0.1-5
2015-04-03 0.1-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-01 0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-24 0.1-3
2009-07-22 0.1-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-14 1.0.4
2014-06-09 1.0.3
2014-06-02 1.0.2
2014-05-26 1.0.1
2014-05-19 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-19 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-05 0.1-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-09 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-02 1.2
2015-01-16 1.1
2013-01-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-07-22 1.6.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-12 1.0-5
2013-10-20 1.0-4
2012-07-06 1.0-03
2012-06-18 1.0-02
2012-05-11 1.0-01
2012-03-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-14 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-01 0.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-08 0.8.5.1
2013-08-12 0.8.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-06-28 1.0.4
2011-04-26 1.0.3
2010-11-08 1.0.2
2010-04-21 1.0.1
2009-12-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-01 1.0.1
2014-04-14 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-15 1.0
Title: Robust and Sparse Correlation Matrix
Description: Performs robust and sparse correlation matrix estimation. Robustness is achieved based on a simple robust pairwise correlation estimator, while sparsity is obtained based on thresholding. The optimal thresholding is tuned via cross-validation. See Serra, Coretto, Fratello and Tagliaferri (2018) <doi:10.1093/bioinformatics/btx642>.
Author: Luca Coraggio [cre, aut],
Pietro Coretto [aut],
Angela Serra [aut],
Roberto Tagliaferri [ctb]
Maintainer: Luca Coraggio <luca.coraggio@unina.it>
Diff between RSC versions 2.0.1 dated 2021-10-21 and 2.0.2 dated 2022-06-20
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 1 + NEWS | 5 +++++ R/rsc.R | 2 +- man/rmad.Rd | 11 ++++------- 6 files changed, 20 insertions(+), 17 deletions(-)
Title: Calculate the Probability of Correct Selection (PCS)
Description: Given k populations (can be in thousands), what is the probability that a given subset of size t contains the true top t populations? This package finds this probability and offers three tuning parameters (G, d, L) to relax the definition.
Author: Jason Wilson
Maintainer: Jason Wilson <jason.wilson@biola.edu>
Diff between PCS versions 1.2 dated 2013-08-16 and 1.3 dated 2022-06-20
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NAMESPACE | 22 +++++++++++----------- man/G.H.Quad.Rd | 2 +- man/PCS-package.Rd | 11 ++++++----- man/PCS.boot.par.Rd | 13 +++++++------ man/PdCSGt.bootstrap.NP2.Rd | 6 +++--- man/PdofCSGt.bootstrap5.Rd | 6 +++--- man/PdofCSt.T1or2.Rd | 6 +++--- man/PofCSLt.bootstrap5.Rd | 7 ++++--- man/PofCSt.Rd | 6 +++--- man/tindep.Rd | 2 +- 12 files changed, 58 insertions(+), 55 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-18 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-21 1.1-7
2013-09-15 1.1-6
2012-09-12 1.1-5
2012-05-25 1.1-4
2012-03-19 1.1-3
2012-02-06 1.1-1
2012-01-11 1.1-0
2011-09-30 1.0-01
2011-09-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-09-08 0.941
2008-06-09 0.92
2007-05-18 0.91
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-05 0.1.5
2012-09-14 0.1.4
2012-05-21 0.1.3
2012-05-02 0.1.2
2012-04-24 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-15 0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-28 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-01 1.6
2015-01-08 1.5
2014-10-30 1.3
2014-04-19 1.2
2014-01-13 1.1
2013-12-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-10 1.0
2007-08-07 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-03 0.2.1-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-18 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-12 1.0.1
2013-07-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-24 1.1
2013-03-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-22 0.6.0
2013-11-12 0.5.4
2013-10-10 0.5.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-03 3.1
2013-03-16 3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-25 0.1.1
2015-05-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-25 1.2
2014-03-21 1.1
2014-01-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-22 2.4
2015-02-19 2.3
2014-04-14 1.17
2014-02-28 1.14
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-28 0.6
2014-05-09 0.5
2014-01-17 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-04 1.0
Title: Dose Response Curve Fitting and Mixture Toxicity Assessment
Description: Curve Fitting of monotonic(sigmoidal) & non-monotonic(J-shaped)
dose-response data. Predicting mixture toxicity based on reference
models such as 'concentration addition', 'independent action', and 'generalized
concentration addition'.
Author: Xiangwei Zhu
Maintainer: Xiangwei Zhu <xwzhunc@gmail.com>
Diff between mixtox versions 1.3.2 dated 2017-02-18 and 1.4.0 dated 2022-06-20
DESCRIPTION | 20 ++++++++------- MD5 | 72 +++++++++++++++++++++++++++++-------------------------- NAMESPACE | 3 +- R/BMD.R | 12 ++++++++- R/CEx.R | 11 +++++++- R/ECx.R | 26 ++++++++++++++++--- R/NOEC.R | 15 +++++++++-- R/caPred.R | 14 +++++++++- R/curveFit.R | 19 +++++++++++--- R/ecaPred.R | 11 +++++++- R/eiaPred.R | 10 ++++++- R/gcaHill.R | 16 ++++++++++-- R/gcaPred.R | 15 +++++++++-- R/getCI.R | 15 +++++++++-- R/iaPred.R | 15 +++++++++-- R/nmECx.R | 12 ++++++++- R/readModel.R |only R/readTox.R |only R/tuneFit.R | 10 +++++-- R/unidTab.R | 21 ++++++++++++---- man/BMD.Rd | 4 ++- man/CEx.Rd | 4 ++- man/DTcv.Rd | 4 +-- man/ECx.Rd | 4 ++- man/NOEC.Rd | 9 +++++- man/caPred.Rd | 25 +++++++++---------- man/curveFit.Rd | 6 +++- man/ecaPred.Rd | 4 ++- man/eiaPred.Rd | 4 ++- man/gcaHill.Rd | 4 ++- man/gcaPred.Rd | 4 ++- man/getCI.Rd | 6 +++- man/iaPred.Rd | 22 ++++++++++------ man/mixtox.Rd | 20 ++++++++++----- man/nmECx.Rd | 6 +++- man/readModel.Rd |only man/readTox.Rd |only man/tuneFit.Rd | 3 +- man/unidTab.Rd | 10 +++++-- 39 files changed, 333 insertions(+), 123 deletions(-)
More information about MainExistingDatasets at CRAN
Permanent link
Title: Data-Limited Methods Toolkit
Description: A collection of data-limited management procedures that can be evaluated
with management strategy evaluation with the 'MSEtool' package, or applied to
fishery data to provide management recommendations.
Author: Tom Carruthers [aut],
Quang Huynh [aut],
Adrian Hordyk [aut, cre],
M. Bryan [ctb],
HF. Geremont [ctb],
C. Grandin [ctb],
W. Harford [ctb],
Q. Huynh [ctb],
C. Walters [ctb]
Maintainer: Adrian Hordyk <adrian@bluematterscience.com>
Diff between DLMtool versions 6.0.5 dated 2022-06-08 and 6.0.6 dated 2022-06-20
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS.md | 3 +++ R/MPs_Input.R | 2 +- R/MPs_Output.R | 14 +++++++------- man/DLMtool-package.Rd | 2 +- man/Fadapt.Rd | 2 +- man/ICI.Rd | 2 +- man/LstepCC1.Rd | 2 +- man/LstepCE1.Rd | 2 +- man/MCD.Rd | 2 -- man/SBT1.Rd | 4 ++-- man/SPmod.Rd | 2 +- man/SPslope.Rd | 2 +- 14 files changed, 37 insertions(+), 36 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-23 0.2-5
2012-06-10 0.1-7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-08-14 0.4
2009-06-17 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-11 1.0.1
2014-07-26 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-04-02 1.1-3
2008-03-26 1.1-2
2008-03-24 1.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-03-16 1.9
2015-03-04 1.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-10 2.1
2013-07-03 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-03 1.1
2014-04-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-25 0.8.1
2013-10-27 0.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-05 1.4.2
2012-12-04 1.4.1
2011-06-30 1.3.7
2006-10-09 1.3.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-05 0.1-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-26 1.2
2013-02-24 1.1
2010-02-28 1.0.1-1
2009-12-14 1.0-1
2009-12-09 0.9-1
2009-11-15 0.8-1
2009-11-11 0.7-1
2009-08-08 0.6-1
2009-07-31 0.5-1
2009-05-28 0.4-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-08-01 0.6-1
2006-02-08 0.6-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-20 1.15
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-07-12 1.0.7
2012-07-24 1.0.6
2009-09-22 1.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-11-02 0.1-5
2012-10-25 0.1-4
2012-07-29 0.1-3
2012-04-26 0.1-1
2012-04-17 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-12 1.0.59
2013-03-15 1.0.38
2013-02-27 1.0.32
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-02 1.0
2014-05-23 0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-12 1.0.2
2014-01-16 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-03 0.1-9
Title: Basic Wavelet Routines for One-, Two-, and Three-Dimensional
Signal Processing
Description: Basic wavelet routines for time series (1D), image (2D)
and array (3D) analysis. The code provided here is based on
wavelet methodology developed in Percival and Walden (2000);
Gencay, Selcuk and Whitcher (2001); the dual-tree complex wavelet
transform (DTCWT) from Kingsbury (1999, 2001) as implemented by
Selesnick; and Hilbert wavelet pairs (Selesnick 2001, 2002). All
figures in chapters 4-7 of GSW (2001) are reproducible using this
package and R code available at the book website(s) below.
Author: Brandon Whitcher
Maintainer: Brandon Whitcher <bwhitcher@gmail.com>
Diff between waveslim versions 1.8.2 dated 2020-03-13 and 1.8.3 dated 2022-06-20
DESCRIPTION | 13 ++++++------- MD5 | 45 +++++++++++++++++++++++---------------------- R/cov.R | 6 +++--- R/var_2D.R |only R/zzz.R | 14 ++++++++------ README.md | 15 +++++++++------ man/Dualtree.Rd | 8 ++------ man/Farras.Rd | 7 ++----- man/Selesnick.Rd | 14 +++++--------- man/Thresholding.Rd | 2 +- man/brick.wall.Rd | 4 +++- man/convolve2D.Rd | 6 +++--- man/cplxdual.Rd | 10 +++------- man/denoise.dwt.2d.Rd | 6 +++--- man/dualfilt1.Rd | 7 ++----- man/dwpt.Rd | 4 ++-- man/dwt.2d.Rd | 2 +- man/dwt.3d.Rd | 2 +- man/dwt.Rd | 5 ++--- man/fb.Rd | 4 ---- man/modwt.Rd | 5 ++--- man/mra.2d.Rd | 12 ++++++------ man/mra.Rd | 5 ++--- man/wave.variance.Rd | 2 ++ 24 files changed, 91 insertions(+), 107 deletions(-)
Title: Multiple Imputation with Denoising Autoencoders
Description: A tool for multiply imputing missing data using 'MIDAS', a deep learning method based on denoising autoencoder neural networks. This algorithm offers significant accuracy and efficiency advantages over other multiple imputation strategies, particularly when applied to large datasets with complex features. Alongside interfacing with 'Python' to run the core algorithm, this package contains functions for processing data before and after model training, running imputation model diagnostics, generating multiple completed datasets, and estimating regression models on these datasets.
Author: Thomas Robinson [aut, cre, cph]
,
Ranjit Lall [aut, cph] ,
Alex Stenlake [ctb, cph]
Maintainer: Thomas Robinson <ts.robinson1994@gmail.com>
Diff between rMIDAS versions 0.4.0 dated 2022-02-10 and 0.4.1 dated 2022-06-20
DESCRIPTION | 8 +-- MD5 | 12 ++-- NEWS.md | 7 ++ README.md | 4 - inst/doc/custom_python_versions.html | 86 ++++++++++++++++++++++++++++------- inst/doc/imputation_demo.html | 62 +++++++++++++++++++++---- inst/python/midas_base.py | 5 ++ 7 files changed, 146 insertions(+), 38 deletions(-)
Title: Multi-Block Partial Least Squares Discriminant Analysis
Description: Several functions are provided to implement a MBPLSDA : components search, optimal model components number search, optimal model validity test by permutation tests, observed values evaluation of optimal model parameters and predicted categories, bootstrap values evaluation of optimal model parameters and predicted cross-validated categories. The use of this package is described in Brandolini-Bunlon et al (2019. Multi-block PLS discriminant analysis for the joint analysis of metabolomic and epidemiological data. Metabolomics, 15(10):134).
Author: Marion Brandolini-Bunlon, Stephanie Bougeard, Melanie Petera, Estelle Pujos-Guillot
Maintainer: Marion Brandolini-Bunlon <marion.brandolini-bunlon@inra.fr>
Diff between packMBPLSDA versions 0.8.0 dated 2020-03-15 and 0.9.0 dated 2022-06-20
packMBPLSDA-0.8.0/packMBPLSDA/data/medical.txt.gz |only packMBPLSDA-0.8.0/packMBPLSDA/data/nutrition.txt.gz |only packMBPLSDA-0.8.0/packMBPLSDA/data/omics.txt.gz |only packMBPLSDA-0.8.0/packMBPLSDA/data/status.txt.gz |only packMBPLSDA-0.9.0/packMBPLSDA/DESCRIPTION | 12 +-- packMBPLSDA-0.9.0/packMBPLSDA/MD5 | 30 ++++---- packMBPLSDA-0.9.0/packMBPLSDA/NAMESPACE | 1 packMBPLSDA-0.9.0/packMBPLSDA/R/boot_mbplsda.R | 4 - packMBPLSDA-0.9.0/packMBPLSDA/R/cvpred_mbplsda.R | 4 - packMBPLSDA-0.9.0/packMBPLSDA/R/disjunctive.R | 51 ++++++++++++++- packMBPLSDA-0.9.0/packMBPLSDA/R/permut_mbplsda.R | 4 - packMBPLSDA-0.9.0/packMBPLSDA/R/pred_mbplsda.R | 4 - packMBPLSDA-0.9.0/packMBPLSDA/R/testdim_mbplsda.R | 4 - packMBPLSDA-0.9.0/packMBPLSDA/build/partial.rdb |binary packMBPLSDA-0.9.0/packMBPLSDA/data/medical.txt |only packMBPLSDA-0.9.0/packMBPLSDA/data/nutrition.txt |only packMBPLSDA-0.9.0/packMBPLSDA/data/omics.txt |only packMBPLSDA-0.9.0/packMBPLSDA/data/status.txt |only packMBPLSDA-0.9.0/packMBPLSDA/man/permut_mbplsda.Rd | 16 ---- packMBPLSDA-0.9.0/packMBPLSDA/man/plot_permut_mbplsda.Rd | 16 ---- 20 files changed, 81 insertions(+), 65 deletions(-)
Title: Miscellaneous Esoteric Statistical Scripts
Description: A mixed collection of useful and semi-useful diverse
statistical functions, some of which may even be referenced in
The R Primer book.
Author: Claus Thorn Ekstroem [aut, cre]
Maintainer: Claus Thorn Ekstroem <claus@rprimer.dk>
Diff between MESS versions 0.5.7 dated 2020-07-21 and 0.5.9 dated 2022-06-20
DESCRIPTION | 10 +++++----- MD5 | 40 +++++++++++++++++++++------------------- NAMESPACE | 2 ++ R/MESS-package.R | 14 +++++++------- R/age.R | 9 ++------- R/drop1.geeglm.R | 7 ++++++- R/feature.test.R | 2 +- R/gkgamma.R | 9 +++++++-- R/loadRData.R |only R/power.t.test.R | 6 +++--- R/qic.R | 2 +- R/residualplot.R | 2 +- R/scorefct.R | 2 ++ man/age.Rd | 9 ++------- man/earthquakes.Rd | 2 +- man/feature.test.Rd | 2 +- man/happiness.Rd | 8 ++++---- man/lifeexpect.Rd | 2 +- man/loadRData.Rd |only man/power_t_test.Rd | 4 ++-- man/soccer.Rd | 2 +- src/RcppExports.cpp | 5 +++++ 22 files changed, 75 insertions(+), 64 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-02 1.2
2015-04-27 1.1
2014-07-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-03-11 2.1-1
2012-12-17 2.1-0
2012-05-26 2.0-2
2012-05-04 2.0-1
2010-12-13 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-23 2015-2.1
2014-07-17 2014-07.16
2014-01-08 2014-01.08
2013-02-13 2013-02.12
2013-01-27 2013-01.21
2012-10-17 2012-10.13
2012-08-14 2012-8.13
2012-05-04 2012-5.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-12 2.4
2013-03-19 2.1
2013-03-14 2.0
2013-02-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-12 2.2-2
2014-08-15 2.2-1
2013-01-29 2.1-3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-09-14 0.2
2012-07-29 0.1-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-31 1.3-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-27 0.1-2
2014-05-16 0.1-1
2014-05-09 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-19 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-10 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-13 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-10-19 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-22 1.0-1
2012-10-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-10-17 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-06-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-08 1.3
2014-01-16 1.2
2013-08-29 1.1
2013-07-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-15 1.1
2010-09-01 1.0
Title: Model Visualisation Toolbox for 'easystats' and 'ggplot2'
Description: Provides plotting utilities supporting easystats-packages
(<https://github.com/easystats/easystats>) and some extra themes,
geoms, and scales for 'ggplot2'. Color scales are based on
<https://materialui.co/colors>.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, inv] ,
Indrajeet Patil [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Brenton M. Wiernik [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Jeffrey R. Stevens [ctb] ,
Matthew Smith [rev] ,
Jakob Bossek [re [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between see versions 0.7.0 dated 2022-03-31 and 0.7.1 dated 2022-06-20
see-0.7.0/see/inst/WORDLIST |only see-0.7.0/see/tests/spelling.R |only see-0.7.1/see/DESCRIPTION | 23 +- see-0.7.1/see/MD5 | 36 +-- see-0.7.1/see/NEWS.md | 14 + see-0.7.1/see/R/plot.check_collinearity.R | 29 +- see-0.7.1/see/R/plot.check_model.R | 126 ++++++++---- see-0.7.1/see/R/plot.check_normality.R | 4 see-0.7.1/see/R/plot.parameters_model.R | 6 see-0.7.1/see/R/plot.parameters_pca.R | 2 see-0.7.1/see/R/print.check_model.R | 2 see-0.7.1/see/man/plot.see_check_collinearity.Rd | 13 + see-0.7.1/see/man/plot.see_check_normality.Rd | 5 see-0.7.1/see/man/plot.see_check_outliers.Rd | 3 see-0.7.1/see/tests/testthat/test-plot.check_normality.R | 2 see-0.7.1/see/tests/testthat/test-plot.n_factors.R | 2 see-0.7.1/see/tests/testthat/test-vdiffr_bayestestr_plots.R | 2 see-0.7.1/see/tests/testthat/test-vdiffr_geoms_coords.R | 2 see-0.7.1/see/tests/testthat/test-vdiffr_scale_color.R | 2 see-0.7.1/see/tests/testthat/test-vdiffr_themes.R | 2 20 files changed, 178 insertions(+), 97 deletions(-)
Title: Classification with Parallel Factor Analysis
Description: Classification using Richard A. Harshman's Parallel Factor Analysis (Parafac) model-1 fit to a three-way or four-way data tensor/array. See Harshman and Lundy (1994): <doi:10.1016/0167-9473(94)90132-5>. Uses Parafac factor weights from one mode of this model as predictors to tune parameters for one or more classification methods via a k-fold cross-validation procedure. Supports penalized logistic regression, support vector machine, random forest, and feed-forward neural network. Supports binary and multiclass classification. Predicts class labels or class probabilities and calculates multiple classification performance measures. Parallel computing is implemented via the 'parallel' and 'doParallel' packages.
Author: Matthew A. Snodgress <snodg031@umn.edu>
Maintainer: Matthew A. Snodgress <snodg031@umn.edu>
Diff between cpfa versions 1.0-3 dated 2022-06-15 and 1.0-4 dated 2022-06-20
cpfa-1.0-3/cpfa/build |only cpfa-1.0-3/cpfa/inst |only cpfa-1.0-3/cpfa/vignettes |only cpfa-1.0-4/cpfa/DESCRIPTION | 12 +++++------- cpfa-1.0-4/cpfa/MD5 | 7 +------ 5 files changed, 6 insertions(+), 13 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-23 1.0.2
2010-07-03 1.0.1
2010-05-05 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-29 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-10-01 0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-20 1.1
2015-04-22 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-11-27 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-28 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-03 0.1-3
2013-03-23 0.1-2.1
2013-02-20 0.1-2
2012-11-05 0.1-1
2012-05-09 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-19 1.1.1
2015-05-06 1.0
2015-05-03 0.11
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2015-01-13 0.0.4
2014-08-26 0.0.3
2014-07-21 0.0.2
2014-06-30 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-10-04 0.4
2013-03-06 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-20 0.1.1
2014-03-07 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-08 1.1
2015-02-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-10-29 0.1-4
2011-12-05 0.1-3
2011-11-20 0.1-2
2008-07-05 0.1-1
2008-06-26 0.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-01 1.1
2013-06-26 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-09-03 1.0.1
2012-02-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-23 1.1.1
2014-03-23 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-10-17 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-29 1.0-3
2013-05-13 1.0-2
2013-04-28 1.0-1
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources ('rpart', 'RWeka', 'PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the 'party' package are provided based
on the new infrastructure. A description of this package was published
by Hothorn and Zeileis (2015) <https://jmlr.org/papers/v16/hothorn15a.html>.
Author: Torsten Hothorn [aut, cre] ,
Heidi Seibold [ctb] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.2-15 dated 2021-08-23 and 1.2-16 dated 2022-06-20
DESCRIPTION | 8 +++--- MD5 | 26 ++++++++++----------- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 9 +++++++ inst/ULGcourse-2020/exercises/exercise_titanic.Rmd | 2 - inst/doc/constparty.pdf |binary inst/doc/ctree.pdf |binary inst/doc/mob.pdf |binary inst/doc/partykit.pdf |binary man/panelfunctions.Rd | 2 - man/party-plot.Rd | 2 - tests/regtest-honesty.R | 5 ++-- vignettes/party.bib | 12 ++++----- 14 files changed, 38 insertions(+), 28 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-08 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-02 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-16 0.1-1
2013-12-16 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-01-03 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-20 0.2.0
2012-03-16 0.1.3
2012-02-20 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-06 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-05-11 1.0-5
2009-05-29 1.0-4
2008-09-28 1.0-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-03 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-15 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-21 0.1.19
2014-11-04 0.1.18
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-07 1.1
2012-08-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-17 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-15 1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-02 1.0.3
2013-01-31 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-23 1.1
2014-04-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-22 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-06 0.3
2013-09-09 0.2
Title: Creates Statistical Reports
Description: Contains functions to create regulatory-style statistical reports.
Originally designed to create tables, listings, and figures for the
pharmaceutical, biotechnology, and medical device industries, these
reports are generalized enough that they could be used in any industry.
Generates text, rich-text, PDF, HTML, and Microsoft Word file formats.
The package specializes
in printing wide and long tables with automatic page wrapping and splitting.
Reports can be produced with a minimum of function calls, and without
relying on other table packages. The package supports titles, footnotes,
page header, page footers, spanning headers, page by variables,
and automatic page numbering.
Author: David Bosak [aut, cre],
Kevin Kramer [ctb],
Archytas Clinical Solutions [cph]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between reporter versions 1.3.1 dated 2022-03-10 and 1.3.3 dated 2022-06-20
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Title: A 'Shiny' App for Exploration of Text Collections
Description: Facilitates dynamic exploration of text collections through an
intuitive graphical user interface and the power of regular expressions.
The package contains 1) a helper function to convert a data frame to a
'corporaexplorerobject', 2) a 'Shiny' app for fast and flexible exploration
of a 'corporaexplorerobject', and 3) a 'Shiny' app for simple
retrieval/extraction of documents from a 'corporaexplorerobject' in a
reading-friendly format. The package also includes demo apps with which
one can explore Jane Austen's novels and the State of the Union Addresses
(data from the 'janeaustenr' and 'sotu' packages respectively).
Author: Kristian Lundby Gjerde [aut, cre]
Maintainer: Kristian Lundby Gjerde <kristian.gjerde@gmail.com>
Diff between corporaexplorer versions 0.8.5 dated 2022-04-08 and 0.8.6 dated 2022-06-20
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/explore.R | 2 +- R/run_document_extractor.R | 2 +- data/test_data.rda |binary inst/explorer/global/function_display_document.R | 4 ++-- inst/explorer/global/functions_main_search_engine.R | 2 +- inst/explorer/tests/shinytest/corpus_info_test.R | 14 ++++++++++++++ 9 files changed, 36 insertions(+), 17 deletions(-)
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2014-04-18 0.1.3
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2013-07-11 0.8-0
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2014-11-03 1.2.2
2014-06-11 1.2
2014-05-11 1.1
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2015-01-07 1.0-3
2015-01-04 1.0-2
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2014-02-19 1.0
2009-03-19 0.1
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2014-09-04 1.0
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2015-06-12 0.7-3
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2013-11-28 0.6
2010-03-25 0.5
2009-11-01 0.2
2009-10-12 0.1
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2013-07-24 0.1-1
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2013-10-04 0.8-3
Title: Marginal Effects, Marginal Means, Predictions, and Contrasts
Description: Compute, summarize, and plot marginal effects, adjusted predictions, contrasts, and marginal means for a wide variety of models.
Author: Vincent Arel-Bundock [aut, cre, cph]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between marginaleffects versions 0.5.0 dated 2022-05-17 and 0.6.0 dated 2022-06-20
marginaleffects-0.5.0/marginaleffects/R/sanity_type.R |only marginaleffects-0.5.0/marginaleffects/R/standard_errors_delta.R |only marginaleffects-0.5.0/marginaleffects/R/utils.R |only marginaleffects-0.5.0/marginaleffects/inst/doc/mfx01_predictions.R |only marginaleffects-0.5.0/marginaleffects/inst/doc/mfx01_predictions.Rmd |only marginaleffects-0.5.0/marginaleffects/inst/doc/mfx01_predictions.html |only marginaleffects-0.5.0/marginaleffects/inst/doc/mfx02_mfx.R |only marginaleffects-0.5.0/marginaleffects/inst/doc/mfx02_mfx.Rmd |only marginaleffects-0.5.0/marginaleffects/inst/doc/mfx02_mfx.html |only marginaleffects-0.5.0/marginaleffects/inst/doc/mfx03_contrasts.R |only marginaleffects-0.5.0/marginaleffects/inst/doc/mfx03_contrasts.Rmd |only marginaleffects-0.5.0/marginaleffects/inst/doc/mfx03_contrasts.html |only marginaleffects-0.5.0/marginaleffects/inst/doc/mfx04_marginalmeans.R |only marginaleffects-0.5.0/marginaleffects/inst/doc/mfx04_marginalmeans.Rmd |only 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marginaleffects-0.6.0/marginaleffects/R/methods_fixest.R | 8 marginaleffects-0.6.0/marginaleffects/R/methods_glmmTMB.R | 2 marginaleffects-0.6.0/marginaleffects/R/methods_lme4.R | 4 marginaleffects-0.6.0/marginaleffects/R/methods_nnet.R | 30 marginaleffects-0.6.0/marginaleffects/R/package.R | 4 marginaleffects-0.6.0/marginaleffects/R/plot_cap.R | 71 +- marginaleffects-0.6.0/marginaleffects/R/plot_cco.R |only marginaleffects-0.6.0/marginaleffects/R/plot_cme.R | 127 --- marginaleffects-0.6.0/marginaleffects/R/posteriordraws.R | 2 marginaleffects-0.6.0/marginaleffects/R/predictions.R | 258 +++++-- marginaleffects-0.6.0/marginaleffects/R/sanitize_eps.R |only marginaleffects-0.6.0/marginaleffects/R/sanitize_hypothesis.R |only marginaleffects-0.6.0/marginaleffects/R/sanitize_interaction.R |only marginaleffects-0.6.0/marginaleffects/R/sanitize_newdata.R | 17 marginaleffects-0.6.0/marginaleffects/R/sanitize_transform_pre.R | 18 marginaleffects-0.6.0/marginaleffects/R/sanitize_type.R |only marginaleffects-0.6.0/marginaleffects/R/sanitize_variables.R | 32 marginaleffects-0.6.0/marginaleffects/R/sanity.R | 38 - marginaleffects-0.6.0/marginaleffects/R/sanity_model.R | 114 +-- marginaleffects-0.6.0/marginaleffects/R/set_coef.R | 2 marginaleffects-0.6.0/marginaleffects/R/summary.R | 25 marginaleffects-0.6.0/marginaleffects/R/tidy.R | 234 ++++-- marginaleffects-0.6.0/marginaleffects/R/type_dictionary.R | 2 marginaleffects-0.6.0/marginaleffects/R/unpack_matrix_cols.R |only marginaleffects-0.6.0/marginaleffects/README.md | 244 ++++--- marginaleffects-0.6.0/marginaleffects/build/vignette.rds |binary marginaleffects-0.6.0/marginaleffects/inst/WORDLIST | 12 marginaleffects-0.6.0/marginaleffects/inst/doc/documentation.R |only marginaleffects-0.6.0/marginaleffects/inst/doc/documentation.Rmd |only marginaleffects-0.6.0/marginaleffects/inst/doc/documentation.html |only marginaleffects-0.6.0/marginaleffects/man/comparisons.Rd | 217 ++++-- 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10 marginaleffects-0.6.0/marginaleffects/man/glance.marginaleffects.Rd |only marginaleffects-0.6.0/marginaleffects/man/marginaleffects.Rd | 145 +++- marginaleffects-0.6.0/marginaleffects/man/marginalmeans.Rd | 109 ++- marginaleffects-0.6.0/marginaleffects/man/meffects.Rd | 145 +++- marginaleffects-0.6.0/marginaleffects/man/plot_cap.Rd | 5 marginaleffects-0.6.0/marginaleffects/man/plot_cco.Rd |only marginaleffects-0.6.0/marginaleffects/man/plot_cme.Rd | 4 marginaleffects-0.6.0/marginaleffects/man/posteriordraws.Rd | 4 marginaleffects-0.6.0/marginaleffects/man/predictions.Rd | 148 +++- marginaleffects-0.6.0/marginaleffects/man/reexports.Rd | 4 marginaleffects-0.6.0/marginaleffects/man/sanity_model_specific.Rd | 9 marginaleffects-0.6.0/marginaleffects/man/set_coef.Rd | 14 marginaleffects-0.6.0/marginaleffects/man/summary.comparisons.Rd | 4 marginaleffects-0.6.0/marginaleffects/man/tidy.comparisons.Rd | 6 marginaleffects-0.6.0/marginaleffects/man/tidy.deltamethod.Rd |only marginaleffects-0.6.0/marginaleffects/man/tidy.predictions.Rd | 6 marginaleffects-0.6.0/marginaleffects/tests/tinytest.R |only marginaleffects-0.6.0/marginaleffects/vignettes/documentation.Rmd |only 120 files changed, 2234 insertions(+), 1283 deletions(-)
More information about marginaleffects at CRAN
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Title: High Level Encryption Wrappers
Description: Encryption wrappers, using low-level support from
'sodium' and 'openssl'. 'cyphr' tries to smooth over some pain
points when using encryption within applications and data analysis
by wrapping around differences in function names and arguments in
different encryption providing packages. It also provides
high-level wrappers for input/output functions for seamlessly
adding encryption to existing analyses.
Author: Rich FitzJohn [aut, cre],
Jai Ranganathan [ctb]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between cyphr versions 1.1.2 dated 2021-05-17 and 1.1.4 dated 2022-06-20
DESCRIPTION | 8 +- MD5 | 12 +-- NEWS.md | 8 +- README.md | 6 - build/vignette.rds |binary inst/doc/cyphr.html | 164 ++++++++++++++++++++++++++-------------------------- inst/doc/data.html | 112 +++++++++++++++++------------------ 7 files changed, 155 insertions(+), 155 deletions(-)
Title: Composite Indicators Functions
Description: A collection of functions to calculate Composite Indicators methods, focusing, in particular, on the normalisation and weighting-aggregation steps, as described in OECD Handbook on constructing composite indicators: methodology and user guide <https://www.oecd.org/els/soc/handbookonconstructingcompositeindicatorsmethodologyanduserguide.htm>, 'Vidoli' and 'Fusco' and 'Mazziotta' <doi:10.1007/s11205-014-0710-y>, 'Mazziotta' and 'Pareto' (2016) <doi:10.1007/s11205-015-0998-2>, 'Van Puyenbroeck and 'Rogge' <doi:10.1016/j.ejor.2016.07.038> and other authors.
Author: Francesco Vidoli, Elisa Fusco
Maintainer: Francesco Vidoli <fvidoli@gmail.com>
Diff between Compind versions 2.4 dated 2022-06-09 and 2.5 dated 2022-06-20
Compind-2.4/Compind/R/ci_bod_var_w.R |only Compind-2.4/Compind/man/ci_bod_var_w.Rd |only Compind-2.5/Compind/DESCRIPTION | 6 +++--- Compind-2.5/Compind/MD5 | 10 ++++------ Compind-2.5/Compind/NAMESPACE | 1 - Compind-2.5/Compind/NEWS | 6 ++++++ Compind-2.5/Compind/inst/doc/Compind_vignette.pdf |binary 7 files changed, 13 insertions(+), 10 deletions(-)
Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'DDIwR', 'QCA' and 'venn'.
Interprets and translates, factorizes and negates SOP - Sum of Products
expressions, for both binary and multi-value crisp sets, and extracts
information (set names, set values) from those expressions. Other functions
perform various other checks if possibly numeric (even if all numbers reside
in a character vector) and coerce to numeric, or check if the numbers are
whole. It also offers, among many others, a highly versatile recoding
routine and a more flexible alternative to the base function 'with()'.
Some of the functions in this package use related functions from package
'QCA'. Users are encouraged to install that package despite not being listed
in the Imports field, due to circular dependency issues.
Author: Adrian Dusa [aut, cre, cph]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between admisc versions 0.28 dated 2022-06-06 and 0.29 dated 2022-06-20
DESCRIPTION | 8 +-- MD5 | 34 ++++++------- NAMESPACE | 3 + R/asNumeric.R | 30 +++++++---- R/dashes.R | 5 - R/export.R | 6 +- R/getInfo.R | 14 +++-- R/getName.R | 126 ++++++++++++++++++++++++++++---------------------- R/mvSOP.R | 2 R/recode.R | 41 +++++++--------- R/tildae.R | 27 ++++++++-- inst/ChangeLog | 9 +++ man/admisc_package.Rd | 4 - man/factorize.Rd | 7 +- man/getName.Rd | 13 +++-- man/numerics.Rd | 52 ++++++++++++++------ man/recode.Rd | 4 - man/using.Rd | 20 +++---- 18 files changed, 240 insertions(+), 165 deletions(-)
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2012-08-16 1.1.4
2012-06-22 1.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-05 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-31 0.2.3
2014-01-07 0.2.2
2013-12-11 0.2.1
2012-03-16 0.2.0
2011-12-05 0.1.2
2011-06-17 0.1.1
2011-06-15 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-19 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-04-10 0.1.1
2011-07-25 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-16 0.3-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-22 1.1.2
2014-01-17 1.1-1
2013-01-30 1.1-0
2012-03-05 1.0-5
2011-12-19 1.0-4
2011-11-09 1.0-3
2011-08-04 1.0-2
2011-03-24 1.0-1
2011-03-04 1.0-0
2010-12-09 0.6-0
2010-11-11 0.5-1
2010-10-14 0.5-0
Title: Stepwise Procedure for Beta Regression Models
Description: Starting from a Beta Regression Model, it provides a stepwise
procedure to select the linear predictor.
Author: Sergio Garofalo
Maintainer: Sergio Garofalo <sergio.garofalo96@gmail.com>
Diff between StepBeta versions 1.0.0 dated 2022-04-28 and 1.0.1 dated 2022-06-20
DESCRIPTION | 8 MD5 | 4 R/Step_Aic_beta_regression.R | 352 ++++++++++++++++++++++--------------------- 3 files changed, 193 insertions(+), 171 deletions(-)
Title: Testing Randomness in R
Description: Provides several non parametric randomness tests for numeric sequences.
Author: Frederico Caeiro [aut, cre] ,
Ayana Mateus [aut]
Maintainer: Frederico Caeiro <fac@fct.unl.pt>
Diff between randtests versions 1.0 dated 2014-11-16 and 1.0.1 dated 2022-06-20
DESCRIPTION | 27 ++++-- MD5 | 10 +- NAMESPACE | 11 +- NEWS | 33 ++++--- man/bartels.rank.test.Rd | 200 +++++++++++++++++++++++------------------------ man/runs.test.Rd | 136 +++++++++++++++---------------- 6 files changed, 216 insertions(+), 201 deletions(-)
Title: Quantification of Multivariate Dependence
Description: A multivariate copula-based dependence measure. For more information, see Griessenberger, Junker, Trutschnig (2022), On a multivariate copula-based dependence measure and its estimation, Electronic Journal of Statistics, 16, 2206-2251.
Author: Florian Griessenberger [aut, cre],
Robert R. Junker [aut],
Valentin Petztel [aut],
Wolfgang Trutschnig [aut]
Maintainer: Florian Griessenberger <florian.griessenberger@sbg.ac.at>
Diff between qmd versions 1.0.0 dated 2021-09-28 and 1.1.0 dated 2022-06-20
qmd-1.0.0/qmd/R/Functions.R |only qmd-1.0.0/qmd/man/pure_r_ECBC.Rd |only qmd-1.1.0/qmd/DESCRIPTION | 19 +-- qmd-1.1.0/qmd/MD5 | 31 +++-- qmd-1.1.0/qmd/NAMESPACE | 9 + qmd-1.1.0/qmd/R/ECBC.R | 55 +-------- qmd-1.1.0/qmd/R/RcppExports.R |only qmd-1.1.0/qmd/R/feature_selection.R |only qmd-1.1.0/qmd/R/qmd.R |only qmd-1.1.0/qmd/R/zeta1.R | 56 +++------ qmd-1.1.0/qmd/R/zeta1_functions.R | 152 ++++++++++++------------- qmd-1.1.0/qmd/man/ECBC.Rd |only qmd-1.1.0/qmd/man/dot-CB_make_cumulative_df.Rd |only qmd-1.1.0/qmd/man/dot-EACBC.Rd |only qmd-1.1.0/qmd/man/dot-EACBC_nonzero.Rd |only qmd-1.1.0/qmd/man/dot-ECBC.Rd |only qmd-1.1.0/qmd/man/dot-adaptive_masses.Rd |only qmd-1.1.0/qmd/man/dot-local_kernel_integral.Rd |only qmd-1.1.0/qmd/man/dot-random_CB.Rd |only qmd-1.1.0/qmd/man/dot-sample_CB.Rd |only qmd-1.1.0/qmd/man/feature_selection.Rd |only qmd-1.1.0/qmd/man/qmd.Rd |only qmd-1.1.0/qmd/man/qmdrank.Rd |only qmd-1.1.0/qmd/man/zeta1.Rd | 44 ++----- qmd-1.1.0/qmd/src |only 25 files changed, 169 insertions(+), 197 deletions(-)
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages.
These include e.g. measures like r-squared, intraclass correlation
coefficient (Nakagawa, Johnson & Schielzeth (2017)
<doi:10.1098/rsif.2017.0213>), root mean squared error or functions to
check models for overdispersion, singularity or zero-inflation and
more. Functions apply to a large variety of regression models,
including generalized linear models, mixed effects models and Bayesian
models.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [ctb] ,
Martin Jullum [rev],
gjo11 [rev]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between performance versions 0.9.0 dated 2022-03-30 and 0.9.1 dated 2022-06-20
performance-0.9.0/performance/inst/WORDLIST |only performance-0.9.0/performance/tests/spelling.R |only performance-0.9.1/performance/DESCRIPTION | 15 performance-0.9.1/performance/MD5 | 144 ++++---- performance-0.9.1/performance/NAMESPACE | 7 performance-0.9.1/performance/NEWS.md | 45 ++ performance-0.9.1/performance/R/backports.R | 12 performance-0.9.1/performance/R/binned_residuals.R | 2 performance-0.9.1/performance/R/check_collinearity.R | 177 ++++++---- performance-0.9.1/performance/R/check_distribution.R | 3 performance-0.9.1/performance/R/check_heteroscedasticity.R | 1 performance-0.9.1/performance/R/check_homogeneity.R | 1 performance-0.9.1/performance/R/check_model_diagnostics.R | 22 - performance-0.9.1/performance/R/check_multimodal.R | 2 performance-0.9.1/performance/R/check_normality.R | 27 + performance-0.9.1/performance/R/check_outliers.R | 50 +- performance-0.9.1/performance/R/check_overdispersion.R | 27 + performance-0.9.1/performance/R/check_sphericity.R | 1 performance-0.9.1/performance/R/compare_performance.R | 4 performance-0.9.1/performance/R/cronbachs_alpha.R | 2 performance-0.9.1/performance/R/helpers.R | 49 -- performance-0.9.1/performance/R/icc.R | 32 - performance-0.9.1/performance/R/item_split_half.R | 9 performance-0.9.1/performance/R/model_performance.R | 5 performance-0.9.1/performance/R/model_performance.bayesian.R | 2 performance-0.9.1/performance/R/model_performance.ivreg.R | 6 performance-0.9.1/performance/R/model_performance.lavaan.R | 10 performance-0.9.1/performance/R/model_performance.lm.R | 19 + performance-0.9.1/performance/R/performance_aicc.R | 40 ++ performance-0.9.1/performance/R/performance_cv.R |only performance-0.9.1/performance/R/performance_hosmer.R | 4 performance-0.9.1/performance/R/performance_pcp.R | 2 performance-0.9.1/performance/R/performance_rmse.R | 2 performance-0.9.1/performance/R/performance_score.R | 2 performance-0.9.1/performance/R/pp_check.R | 109 ++++-- performance-0.9.1/performance/R/r2.R | 2 performance-0.9.1/performance/R/r2_bayes.R | 2 performance-0.9.1/performance/R/r2_coxsnell.R | 2 performance-0.9.1/performance/R/r2_efron.R | 2 performance-0.9.1/performance/R/r2_mckelvey.R | 4 performance-0.9.1/performance/R/r2_nakagawa.R | 6 performance-0.9.1/performance/R/residuals.R | 2 performance-0.9.1/performance/R/test_performance.R | 11 performance-0.9.1/performance/build/partial.rdb |binary performance-0.9.1/performance/man/binned_residuals.Rd | 2 performance-0.9.1/performance/man/check_autocorrelation.Rd | 72 ++-- performance-0.9.1/performance/man/check_collinearity.Rd | 33 + performance-0.9.1/performance/man/check_multimodal.Rd | 2 performance-0.9.1/performance/man/check_outliers.Rd | 28 - performance-0.9.1/performance/man/check_overdispersion.Rd | 2 performance-0.9.1/performance/man/check_predictions.Rd | 8 performance-0.9.1/performance/man/compare_performance.Rd | 4 performance-0.9.1/performance/man/cronbachs_alpha.Rd | 2 performance-0.9.1/performance/man/icc.Rd | 21 - performance-0.9.1/performance/man/item_split_half.Rd | 6 performance-0.9.1/performance/man/model_performance.Rd | 6 performance-0.9.1/performance/man/model_performance.ivreg.Rd | 6 performance-0.9.1/performance/man/model_performance.lavaan.Rd | 10 performance-0.9.1/performance/man/model_performance.lm.Rd | 5 performance-0.9.1/performance/man/model_performance.stanreg.Rd | 2 performance-0.9.1/performance/man/performance_aicc.Rd | 4 performance-0.9.1/performance/man/performance_cv.Rd |only performance-0.9.1/performance/man/performance_hosmer.Rd | 4 performance-0.9.1/performance/man/performance_pcp.Rd | 2 performance-0.9.1/performance/man/r2_bayes.Rd | 2 performance-0.9.1/performance/man/r2_coxsnell.Rd | 2 performance-0.9.1/performance/man/r2_mckelvey.Rd | 4 performance-0.9.1/performance/man/r2_nakagawa.Rd | 6 performance-0.9.1/performance/man/reexports.Rd | 36 +- performance-0.9.1/performance/man/test_performance.Rd | 11 performance-0.9.1/performance/tests/testthat/test-check_collinearity.R | 28 + performance-0.9.1/performance/tests/testthat/test-check_normality.R | 20 + performance-0.9.1/performance/tests/testthat/test-icc.R | 13 performance-0.9.1/performance/tests/testthat/test-item_splithalf.R | 7 performance-0.9.1/performance/tests/testthat/test-model_performance.fixest.R |only performance-0.9.1/performance/tests/testthat/test-performance_cv.R |only 76 files changed, 782 insertions(+), 430 deletions(-)
Title: Bayesian Inference for Directed Acyclic Graphs
Description: Implementation of a collection of MCMC methods for Bayesian structure learning
of directed acyclic graphs (DAGs), both from continuous and discrete data. For efficient
inference on larger DAGs, the space of DAGs is pruned according to the data. To filter
the search space, the algorithm employs a hybrid approach, combining constraint-based
learning with search and score. A reduced search space is initially defined on the basis
of a skeleton obtained by means of the PC-algorithm, and then iteratively improved with
search and score. Search and score is then performed following two approaches:
Order MCMC, or Partition MCMC.
The BGe score is implemented for continuous data and the BDe score is implemented
for binary data or categorical data. The algorithms may provide the maximum a posteriori
(MAP) graph or a sample (a collection of DAGs) from the posterior distribution given the data.
All algorithms are also applicable for structure learning and sampling for dynamic Bayesian networks.
References:
J. Kuipers, P. Suter, G. Moffa (2022) <doi:10.1080/10618600.2021.2020127>,
N. Friedman and D. Koller (2003) <doi:10.1023/A:1020249912095>,
J. Kuipers and G. Moffa (2017) <doi:10.1080/01621459.2015.1133426>,
M. Kalisch et al. (2012) <doi:10.18637/jss.v047.i11>,
D. Geiger and D. Heckerman (2002) <doi:10.1214/aos/1035844981>.
Author: Polina Suter [aut, cre], Jack Kuipers [aut]
Maintainer: Polina Suter <polina.suter@bsse.ethz.ch>
Diff between BiDAG versions 2.0.7 dated 2022-05-16 and 2.0.9 dated 2022-06-20
DESCRIPTION | 9 ++++----- MD5 | 12 ++++++------ R/DBNfns.R | 11 ++++++++--- R/initpar.R | 4 ++-- R/main.R | 2 +- R/performanceassess.R | 4 ++-- R/spacefns.R | 2 ++ 7 files changed, 25 insertions(+), 19 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-04 0.2.1
2013-11-28 0.2
2009-11-03 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-18 1.5
2011-10-10 1.4
2011-02-09 1.3
2010-10-17 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-10 1.0.1
2015-02-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-04 0.3-3
2014-07-25 0.3-2
2014-04-10 0.3-1
2014-03-26 0.3-0
2013-10-24 0.2-0
2013-06-23 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-16 1.3
2013-04-12 1.2
2013-02-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-17 0.6.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-21 1.1.2
2015-01-03 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-15 0.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-19 1.1
2014-01-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-10-16 1.1
2011-12-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-15 1.1
2013-02-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-08 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-23 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-08 2.0
2014-01-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-06 0.7-4
2014-08-15 0.7-3
2014-01-25 0.7-2
2012-07-03 0.7-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-12 1.1
2014-06-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-26 0.1
Title: Simple Methods for Calculating and Backtesting Value at Risk and
Expected Shortfall
Description: Enables the user to calculate Value at Risk (VaR)
and Expected Shortfall (ES) by means of various types of historical
simulation. Currently plain-, age-, volatility-weighted- and filtered
historical simulation are implemented in this package. Volatility weighting
can be carried out via an exponentially weighted moving average model
(EWMA) or other GARCH-type models. The performance can be assessed via
Traffic Light Test, Coverage Tests and Loss Functions. The methods of the
package are described in Gurrola-Perez, P. and Murphy, D. (2015)
<https://EconPapers.repec.org/RePEc:boe:boeewp:0525> as well as McNeil, J.,
Frey, R., and Embrechts, P. (2015) <https://ideas.repec.org/b/pup/pbooks/10496.html>.
Author: Sebastian Letmathe [aut, cre]
Maintainer: Sebastian Letmathe <sebastian.letmathe@uni-paderborn.de>
Diff between quarks versions 1.1.1 dated 2022-06-13 and 1.1.2 dated 2022-06-20
DESCRIPTION | 8 - MD5 | 22 ++--- NEWS.md | 5 + R/cvgtest.R | 121 +++++++++++++++++++++++------- R/print.quarks.R | 16 +-- R/rollcast.R | 6 - README.md | 4 man/cvgtest.Rd | 83 ++++++++++++++++++-- man/figures/README-unnamed-chunk-10-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary 12 files changed, 199 insertions(+), 66 deletions(-)
Title: Tests and Confidence Intervals on Directly Standardized Rates
for Several Methods
Description: Perform a test of a simple null hypothesis about a
directly standardized rate and obtain the matching confidence
interval using a choice of methods.
Author: Michael Nelson
Maintainer: Michael Nelson <michael.nelson.r.pkg@gmail.com>
Diff between dsrTest versions 0.2.1 dated 2017-05-02 and 1.0.0 dated 2022-06-20
DESCRIPTION | 14 MD5 | 44 - NAMESPACE | 38 - NEWS.md | 33 - R/controlFunctions.R | 202 +++---- R/data-downs.mi.R | 60 +- R/dsrTest.R | 698 ++++++++++++------------ README.md | 48 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/dsrTest-example.R | 146 ++--- inst/doc/dsrTest-example.Rmd | 220 +++---- inst/doc/dsrTest-example.html | 1038 +++++++++++++++++++++++-------------- man/asymptoticControl.Rd | 42 - man/betaControl.Rd | 72 +- man/dobsonControl.Rd | 57 -- man/downs.mi.Rd | 78 +- man/dsrTest-package.Rd | 128 ++-- man/dsrTest.Rd | 233 ++++---- man/gammaControl.Rd | 85 +-- tests/testthat.R | 8 tests/testthat/test-alternatives.R | 186 +++--- vignettes/dsrTest-example.Rmd | 220 +++---- 23 files changed, 1974 insertions(+), 1676 deletions(-)
Title: Download and Explore Datasets from UCSC Xena Data Hubs
Description: Download and explore datasets from UCSC Xena data hubs, which
are a collection of UCSC-hosted public databases such as TCGA, ICGC,
TARGET, GTEx, CCLE, and others. Databases are normalized so they can
be combined, linked, filtered, explored and downloaded.
Author: Shixiang Wang [aut, cre] ,
Xue-Song Liu [aut] ,
Martin Morgan [ctb],
Christine Stawitz [rev] ,
Carl Ganz [rev]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaTools versions 1.4.7 dated 2021-09-15 and 1.4.8 dated 2022-06-20
DESCRIPTION | 8 +- MD5 | 14 ++-- NEWS.md | 4 + R/XenaHub-class.R | 40 ++++++------ README.md | 14 ++-- build/vignette.rds |binary data/XenaData.rda |binary inst/doc/USCSXenaTools.html | 144 +++++++++++++++++++++++++++++++++----------- 8 files changed, 155 insertions(+), 69 deletions(-)
Title: Generate Simulated Sawn Timber Strength Grading Data
Description: Tools for generating simulated sawn timber
strength grading data with a main focus on statistical simulation based on
covariance matrices. Simulation data
for Norway spruce sawn timber from Austria and reference values of means and
standard deviations of grade determining properties from literature
for a number of European countries are provided, as well.
Author: Andreas Weidenhiller [cre, aut]
,
Anton Wegscheider [aut]
Maintainer: Andreas Weidenhiller <a.weidenhiller@holzforschung.at>
Diff between WoodSimulatR versions 0.5.0 dated 2020-11-10 and 0.6.0 dated 2022-06-20
DESCRIPTION | 17 MD5 | 40 NAMESPACE | 4 NEWS.md | 36 R/data.r | 239 ++--- R/stat_sim_dataset.r | 247 ++++- R/statistical_simulation.r | 20 R/subsample_data.r | 2 README.md | 2 build/vignette.rds |binary inst/doc/woodsimulatr_basics.R | 22 inst/doc/woodsimulatr_basics.Rmd | 1018 ++++++++++++------------ inst/doc/woodsimulatr_basics.html | 1132 +++++++++++++++------------ man/get_transform_names.Rd | 2 man/simbase.Rd | 5 man/simbase_covar.Rd | 4 man/simbase_labeler.Rd | 3 man/simulate_dataset.Rd | 75 + tests/testthat/test-stat_sim_dataset.r |only tests/testthat/test_statistical_simulation.r | 45 + vignettes/Inno.bib |only vignettes/woodsimulatr_basics.Rmd | 1018 ++++++++++++------------ 22 files changed, 2246 insertions(+), 1685 deletions(-)
Title: Quick and Dirty Estimates for Wildlife Populations
Description: Provides simple, fast functions for maximum likelihood and Bayesian estimates of wildlife population parameters, suitable for use with simulated data or bootstraps. Early versions were indeed quick and dirty, but optional error-checking routines and meaningful error messages have been added. Includes single and multi-season occupancy, closed capture population estimation, survival, species richness and distance measures.
Author: Mike Meredith [aut, cre],
Jason Bryer [ctb] ,
John Kruschke [ctb],
Brian Neelon [ctb] ,
Michael Schaub [ctb] ,
R Core Team [ctb]
Maintainer: Mike Meredith <mike@mmeredith.net>
Diff between wiqid versions 0.3.0 dated 2020-06-10 and 0.3.1 dated 2022-06-20
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++++--------------- NAMESPACE | 2 +- NEWS | 16 ++++++++++++++++ R/Bnormal.R | 1 + R/Bnormal_2.R | 2 +- R/Bwiqid_methods.R | 3 ++- R/occ2sps.R | 8 ++++---- R/plotComb.R | 11 ++++++----- R/predictAvg.R |only data/railSims.rda |binary data/toves.rda |only inst/tests/testthat/test-Bnormal.R | 2 +- inst/tests/testthat/test-occSSrn.R | 2 +- man/BoccSS.Rd | 5 +++-- man/data_toves.Rd |only man/predictAvg.Rd |only man/richEstimators.Rd | 6 +++--- man/showShinyApp.Rd | 2 +- man/stdPriors.Rd | 4 ++-- 20 files changed, 65 insertions(+), 41 deletions(-)