Title: WHOIS Server Querying
Description: Queries data from WHOIS servers.
Author: Brad Cable
Maintainer: Brad Cable <brad@bcable.net>
Diff between Rwhois versions 1.0.9 dated 2022-01-22 and 1.0.10 dated 2022-06-22
DESCRIPTION | 8 +- MD5 | 8 +- R/functions.R | 168 ++++++++++++++++++++++++++++++++++++++++++++++------------ README.md | 7 +- man/Rwhois.Rd | 6 +- 5 files changed, 151 insertions(+), 46 deletions(-)
Title: RDAP Server Querying
Description: Queries data from RDAP servers.
Author: Brad Cable
Maintainer: Brad Cable <brad@bcable.net>
Diff between Rrdap versions 1.0.2 dated 2022-02-08 and 1.0.3 dated 2022-06-22
DESCRIPTION | 8 ++-- MD5 | 8 ++-- R/functions.R | 109 +++++++++++++++++++++++++++++++++++++++++----------------- README.md | 2 - man/Rrdap.Rd | 3 + 5 files changed, 89 insertions(+), 41 deletions(-)
Title: Visualize R Data Structures with Trees
Description: A set of tools for inspecting and understanding R data
structures inspired by str(). Includes ast() for visualizing abstract
syntax trees, ref() for showing shared references, cst() for showing
call stack trees, and obj_size() for computing object sizes.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between lobstr versions 1.1.1 dated 2019-07-02 and 1.1.2 dated 2022-06-22
lobstr-1.1.1/lobstr/R/RcppExports.R |only lobstr-1.1.1/lobstr/src/RcppExports.cpp |only lobstr-1.1.1/lobstr/tests/testthat/size-aligned.txt |only lobstr-1.1.1/lobstr/tests/testthat/test-ast-fancy.txt |only lobstr-1.1.1/lobstr/tests/testthat/test-ast-scalar.txt |only lobstr-1.1.1/lobstr/tests/testthat/test-ast-simple.txt |only lobstr-1.1.1/lobstr/tests/testthat/test-ref-character.txt |only lobstr-1.1.1/lobstr/tests/testthat/test-ref-env.txt |only lobstr-1.1.1/lobstr/tests/testthat/test-ref-list.txt |only lobstr-1.1.1/lobstr/tests/testthat/test-sxp-altrep.txt |only lobstr-1.1.1/lobstr/tests/testthat/test-sxp-atomic.txt |only lobstr-1.1.1/lobstr/tests/testthat/test-sxp-environment.txt |only lobstr-1.1.1/lobstr/tests/testthat/test-sxp-function.txt |only lobstr-1.1.2/lobstr/DESCRIPTION | 26 ++-- lobstr-1.1.2/lobstr/LICENSE |only lobstr-1.1.2/lobstr/MD5 | 64 ++++++------ lobstr-1.1.2/lobstr/NAMESPACE | 9 + lobstr-1.1.2/lobstr/NEWS.md | 21 +++ lobstr-1.1.2/lobstr/R/cpp11.R |only lobstr-1.1.2/lobstr/R/lobstr.R | 1 lobstr-1.1.2/lobstr/R/ref.R | 2 lobstr-1.1.2/lobstr/R/size.R | 17 ++- lobstr-1.1.2/lobstr/R/tree.R |only lobstr-1.1.2/lobstr/R/utils.R | 24 ++-- lobstr-1.1.2/lobstr/README.md | 30 +++-- lobstr-1.1.2/lobstr/man/ast.Rd | 7 - lobstr-1.1.2/lobstr/man/ref.Rd | 5 lobstr-1.1.2/lobstr/man/sxp.Rd | 5 lobstr-1.1.2/lobstr/man/tree.Rd |only lobstr-1.1.2/lobstr/man/tree_label.Rd |only lobstr-1.1.2/lobstr/src/address.cpp | 17 +-- lobstr-1.1.2/lobstr/src/cpp11.cpp |only lobstr-1.1.2/lobstr/src/inspect.cpp | 61 ++++++----- lobstr-1.1.2/lobstr/src/size.cpp | 56 +++++----- lobstr-1.1.2/lobstr/src/utils.h |only lobstr-1.1.2/lobstr/tests/testthat/_snaps |only lobstr-1.1.2/lobstr/tests/testthat/test-address.R | 2 lobstr-1.1.2/lobstr/tests/testthat/test-ast.R | 27 +---- lobstr-1.1.2/lobstr/tests/testthat/test-ref.R | 51 ++++----- lobstr-1.1.2/lobstr/tests/testthat/test-size.R | 27 ++++- lobstr-1.1.2/lobstr/tests/testthat/test-sxp.R | 46 +++----- lobstr-1.1.2/lobstr/tests/testthat/test-tree.R |only 42 files changed, 275 insertions(+), 223 deletions(-)
Title: A Lightweight Wrapper for 'Slurm'
Description: 'Slurm', Simple Linux Utility for Resource Management
<https://slurm.schedmd.com/>, is a popular 'Linux' based software used to
schedule jobs in 'HPC' (High Performance Computing) clusters. This R package
provides a specialized lightweight wrapper of 'Slurm' with a syntax similar to
that found in the 'parallel' R package. The package also includes a method for
creating socket cluster objects spanning multiple nodes that can be used with
the 'parallel' package.
Author: George Vega Yon [aut, cre] ,
Paul Marjoram [ctb, ths] ,
National Cancer Institute [fnd] ,
Michael Schubert [rev] ,
Michel Lang [rev]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Diff between slurmR versions 0.5-1 dated 2021-09-03 and 0.5-2 dated 2022-06-22
slurmR-0.5-1/slurmR/man/figures/README-pressure-1.png |only slurmR-0.5-1/slurmR/man/figures/logo-v2.svg |only slurmR-0.5-2/slurmR/DESCRIPTION | 8 slurmR-0.5-2/slurmR/MD5 | 30 slurmR-0.5-2/slurmR/NEWS.md | 6 slurmR-0.5-2/slurmR/R/slurm_job.R | 67 + slurmR-0.5-2/slurmR/README.md | 546 +++++++------- slurmR-0.5-2/slurmR/build/partial.rdb |binary slurmR-0.5-2/slurmR/build/vignette.rds |binary slurmR-0.5-2/slurmR/inst/NEWS | 47 + slurmR-0.5-2/slurmR/inst/doc/debugging-re-submission.html | 127 +-- slurmR-0.5-2/slurmR/inst/doc/getting-started.html | 113 +- slurmR-0.5-2/slurmR/inst/doc/working-with-slurm.html | 73 - slurmR-0.5-2/slurmR/man/makeSlurmCluster.Rd | 12 slurmR-0.5-2/slurmR/man/new_rscript.Rd | 6 slurmR-0.5-2/slurmR/man/slurmR.Rd | 6 slurmR-0.5-2/slurmR/man/sourceSlurm.Rd | 18 17 files changed, 565 insertions(+), 494 deletions(-)
Title: Metabolomics Data Analysis Functions
Description: A collection of functions for processing and analyzing metabolite data.
The namesake function "mrbin" converts 1D
or 2D Nuclear Magnetic Resonance data into a matrix of values suitable for further data analysis and
performs basic processing steps in a reproducible way. Negative values, a
common issue in such data, are replaced by positive values (<doi:10.1021/acs.jproteome.0c00684>). All used
parameters are stored in a readable text file and can be restored from that
file to enable exact reproduction of the data at a later time. The function "fia" ranks features according
to their impact on classifier models, especially artificial neural network models.
Author: Matthias Klein [aut, cre]
Maintainer: Matthias Klein <matthias.s.klein@gmx.net>
Diff between mrbin versions 1.6.4 dated 2022-04-28 and 1.6.5 dated 2022-06-22
DESCRIPTION | 24 +++++----- MD5 | 16 +++--- NEWS.md | 7 +++ R/mrbin.R | 120 +++++++++++++++++++++++++++++----------------------- README.md | 4 - inst/doc/mrbin.Rnw | 2 inst/doc/mrbin.pdf |binary man/fia.Rd | 11 ++-- vignettes/mrbin.Rnw | 2 9 files changed, 106 insertions(+), 80 deletions(-)
Title: Tree-Based Models for the Analysis of Log Files from
Computer-Based Assessments
Description: Enables researchers to model log-file data from computer-based assessments using machine-learning techniques. It allows researchers to generate new knowledge by comparing the performance of three tree-based classification models (i.e., decision trees, random forest, and gradient boosting) to predict student's outcome. It also contains a set of handful functions for the analysis of the features' influence on the modeling. Data from the Climate control item from the 2012 Programme for International Student Assessment (PISA, <https://www.oecd.org/pisa/>) is available for an illustration of the package's capability. He, Q., & von Davier, M. (2015) <doi:10.1007/978-3-319-19977-1_13> Boehmke, B., & Greenwell, B. M. (2019) <doi:10.1201/9780367816377> .
Author: Denise Reis Costa [aut, ths],
Qi Qin [aut, cre]
Maintainer: Qi Qin <logantreeqq@gmail.com>
Diff between LOGANTree versions 0.1.0 dated 2022-03-29 and 0.1.1 dated 2022-06-22
DESCRIPTION | 11 +++++------ MD5 | 8 +++++--- R/LOGANTree.R |only R/RocPlot.R | 13 ++++++++----- man/LOGANTree.Rd |only man/RocPlot.Rd | 8 ++++++-- 6 files changed, 24 insertions(+), 16 deletions(-)
Title: Linear Regression Interface
Description: An interface to accelerate linear regression (Ordinary least squares) modelling, which
allows users to build models quickly, while automatically generating interactive visualizations of the results.
Non-linear models specification (e.g. y = b1*x1 + b2*log(x2)) can be easily constructed using user-defined transformations.
Functions for testing wide ranges of model specifications (e.g. y = b*log(x,10) , y = b*log(x,20) , ...), all at once, are also available.
Finally, models can be imported and exported as Excel files where all the information necessary for re-running the models is stored in separate sheets.
Author: Claudio Paladini [aut, cre]
Maintainer: Claudio Paladini <claudio.paladini@bath.edu>
Diff between linea versions 0.0.1 dated 2022-05-13 and 0.0.2 dated 2022-06-22
DESCRIPTION | 20 - MD5 | 61 ++--- NAMESPACE | 15 + NEWS.md | 28 ++ R/charting.R | 428 +++++++++++++++++++++---------------- R/global.R | 3 R/model_file.R | 70 +++--- R/model_next_step.R | 319 ++++++++++++++++++++------- R/model_run.R | 539 +++++++++++++++++++++++++++-------------------- R/model_spec.R | 166 ++++++++++---- R/seasonality.R | 48 +--- R/transformations.R | 26 +- R/useful.R | 13 - README.md | 9 man/TRY.Rd | 4 man/build_model_table.Rd | 4 man/check_trans_df.Rd |only man/decay.Rd | 2 man/decomping.Rd | 2 man/default_trans_df.Rd | 23 +- man/diminish.Rd | 2 man/get_seasonality.Rd | 3 man/get_variable_t.Rd | 11 man/hill_function.Rd | 16 - man/lag.Rd | 2 man/ma.Rd | 2 man/re_run_model.Rd |only man/response_curves.Rd | 34 ++ man/run_combo_model.Rd |only man/run_model.Rd | 25 +- man/what_combo.Rd | 12 - man/what_trans.Rd | 32 +- tests/testthat.R | 43 +-- 33 files changed, 1247 insertions(+), 715 deletions(-)
Title: Data from Access to Information Law
Description: Downloads the public data available from the Brazilian Access to Information Law and and performs a search on information requests and appeals made since 2015.
Author: Igor Laltuf [aut, cre]
Maintainer: Igor Laltuf <igorlaltuf@gmail.com>
Diff between dail versions 1.3.1 dated 2022-06-15 and 1.3.2 dated 2022-06-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/appeals.R | 12 ++++++++---- R/requests.R | 2 +- 4 files changed, 15 insertions(+), 11 deletions(-)
Title: Matching on Generalized Propensity Scores with Continuous
Exposures
Description: Provides a framework for estimating causal effects of a continuous
exposure using observational data, and implementing matching and weighting
on the generalized propensity score.
Wu, X., Mealli, F., Kioumourtzoglou, M.A., Dominici, F. and Braun, D.,
2018. Matching on generalized propensity scores with continuous exposures.
arXiv preprint <arXiv:1812.06575>.
Author: Naeem Khoshnevis [aut, cre] ,
Xiao Wu [aut] ,
Danielle Braun [aut]
Maintainer: Naeem Khoshnevis <nkhoshnevis@g.harvard.edu>
Diff between CausalGPS versions 0.2.7 dated 2022-02-07 and 0.2.8 dated 2022-06-22
CausalGPS-0.2.7/CausalGPS/inst/doc/Notes-on-SL_Wrapper.R |only CausalGPS-0.2.7/CausalGPS/inst/doc/Notes-on-SL_Wrapper.Rmd |only CausalGPS-0.2.7/CausalGPS/inst/doc/Notes-on-SL_Wrapper.html |only CausalGPS-0.2.7/CausalGPS/vignettes/Notes-on-SL_Wrapper.Rmd |only CausalGPS-0.2.8/CausalGPS/DESCRIPTION | 8 CausalGPS-0.2.8/CausalGPS/MD5 | 112 +-- CausalGPS-0.2.8/CausalGPS/NEWS.md | 23 CausalGPS-0.2.8/CausalGPS/R/absolute_corr_fun.R | 2 CausalGPS-0.2.8/CausalGPS/R/check_arguments.R | 9 CausalGPS-0.2.8/CausalGPS/R/compile_pseudo_pop.R | 28 CausalGPS-0.2.8/CausalGPS/R/create_matching.R | 102 +- CausalGPS-0.2.8/CausalGPS/R/data.R | 6 CausalGPS-0.2.8/CausalGPS/R/estimate_gps.R | 59 + CausalGPS-0.2.8/CausalGPS/R/estimate_npmetric_erf.R | 41 - CausalGPS-0.2.8/CausalGPS/R/generate_pseudo_pop.R | 23 CausalGPS-0.2.8/CausalGPS/R/generate_wrap_sl_lib.R | 35 CausalGPS-0.2.8/CausalGPS/R/matching_l1.R | 11 CausalGPS-0.2.8/CausalGPS/R/set_logger.R | 2 CausalGPS-0.2.8/CausalGPS/R/smooth_erf.R | 2 CausalGPS-0.2.8/CausalGPS/README.md | 116 ++- CausalGPS-0.2.8/CausalGPS/build/partial.rdb |binary CausalGPS-0.2.8/CausalGPS/build/vignette.rds |binary CausalGPS-0.2.8/CausalGPS/inst/doc/CausalGPS.Rmd | 80 +- CausalGPS-0.2.8/CausalGPS/inst/doc/CausalGPS.html | 360 +++++++++- CausalGPS-0.2.8/CausalGPS/inst/doc/Developers-Guide.Rmd | 10 CausalGPS-0.2.8/CausalGPS/inst/doc/Developers-Guide.html | 320 +++++++- CausalGPS-0.2.8/CausalGPS/inst/doc/Estimating-GPS.Rmd | 2 CausalGPS-0.2.8/CausalGPS/inst/doc/Estimating-GPS.html | 269 +++++++ CausalGPS-0.2.8/CausalGPS/inst/doc/FAQ.Rmd | 8 CausalGPS-0.2.8/CausalGPS/inst/doc/FAQ.html | 250 ++++++ CausalGPS-0.2.8/CausalGPS/inst/doc/Generating-Pseudo-Population.html | 323 ++++++++ CausalGPS-0.2.8/CausalGPS/inst/doc/Generating-Synthetic-Data.html | 258 ++++++- CausalGPS-0.2.8/CausalGPS/inst/doc/Notes-on-SL-Wrapper.R |only CausalGPS-0.2.8/CausalGPS/inst/doc/Notes-on-SL-Wrapper.Rmd |only CausalGPS-0.2.8/CausalGPS/inst/doc/Notes-on-SL-Wrapper.html |only CausalGPS-0.2.8/CausalGPS/inst/doc/Outcome-Models.html | 219 +++++- CausalGPS-0.2.8/CausalGPS/inst/doc/Singularity-Image.Rmd | 6 CausalGPS-0.2.8/CausalGPS/inst/doc/Singularity-Image.html | 235 ++++++ CausalGPS-0.2.8/CausalGPS/inst/doc/Synthetic-Medicare.html | 246 ++++++ CausalGPS-0.2.8/CausalGPS/inst/doc/Testing-the-Package.Rmd | 7 CausalGPS-0.2.8/CausalGPS/inst/doc/Testing-the-Package.html | 354 +++++++++ CausalGPS-0.2.8/CausalGPS/man/absolute_corr_fun.Rd | 2 CausalGPS-0.2.8/CausalGPS/man/check_args_compile_pseudo_pop.Rd | 11 CausalGPS-0.2.8/CausalGPS/man/compile_pseudo_pop.Rd | 13 CausalGPS-0.2.8/CausalGPS/man/estimate_gps.Rd | 24 CausalGPS-0.2.8/CausalGPS/man/estimate_npmetric_erf.Rd | 17 CausalGPS-0.2.8/CausalGPS/man/gen_wrap_sl_lib.Rd | 6 CausalGPS-0.2.8/CausalGPS/man/generate_pseudo_pop.Rd | 4 CausalGPS-0.2.8/CausalGPS/man/set_logger.Rd | 2 CausalGPS-0.2.8/CausalGPS/man/synthetic_us_2010.Rd | 6 CausalGPS-0.2.8/CausalGPS/tests/testthat/test-compile_pseudo_pop.R | 25 CausalGPS-0.2.8/CausalGPS/tests/testthat/test-estimate_gps.R | 45 + CausalGPS-0.2.8/CausalGPS/tests/testthat/test-estimate_npmetric_erf.R | 5 CausalGPS-0.2.8/CausalGPS/tests/testthat/test-generate_wrap_sl_lib.R | 15 CausalGPS-0.2.8/CausalGPS/vignettes/CausalGPS.Rmd | 80 +- CausalGPS-0.2.8/CausalGPS/vignettes/Developers-Guide.Rmd | 10 CausalGPS-0.2.8/CausalGPS/vignettes/Estimating-GPS.Rmd | 2 CausalGPS-0.2.8/CausalGPS/vignettes/FAQ.Rmd | 8 CausalGPS-0.2.8/CausalGPS/vignettes/Notes-on-SL-Wrapper.Rmd |only CausalGPS-0.2.8/CausalGPS/vignettes/Singularity-Image.Rmd | 6 CausalGPS-0.2.8/CausalGPS/vignettes/Testing-the-Package.Rmd | 7 61 files changed, 3264 insertions(+), 550 deletions(-)
Title: Develop R Packages using Rust
Description: A framework is provided to develop R packages using 'Rust' <https://www.rust-lang.org/> with
minimal overhead, and more wrappers are easily added. Help is provided to run 'Cargo' <https://doc.rust-lang.org/cargo/> in a manner
consistent with CRAN policies. Rust code can also be embedded directly in an R script. The package is not official, affiliated with,
nor endorsed by the Rust project.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between cargo versions 0.2.5 dated 2022-06-18 and 0.2.6 dated 2022-06-22
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS | 3 +++ R/new_package.R | 1 + inst/doc/Writing_R_Extensions_in_Rust.pdf |binary inst/template/HASHSRCHASH |only 6 files changed, 12 insertions(+), 7 deletions(-)
Title: R Client for the Daisi Microservice Platform
Description: Connect, execute, and parse results from the Daisi Microservice Platform <https://www.daisi.io/>. The rdaisi client
includes a set of functionality that allows remote execution of microservices directly from R.
Daisis allow R users to access a wide variety of Python functionality and interact with them natively.
Author: Daisi Technology, Inc. [aut],
Jean-Marie Laigle [aut],
Eric Hare [aut, cre]
Maintainer: Eric Hare <eric.hare@daisi.io>
Diff between rdaisi versions 0.1 dated 2022-06-09 and 0.1.1 dated 2022-06-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/rdaisi.R | 46 ++++++++++++++++++++++++++++------------------ man/Daisi.Rd | 2 +- man/DaisiExecution.Rd | 7 +++++-- 5 files changed, 41 insertions(+), 28 deletions(-)
Title: Spatiotemporal Resampling Methods for 'mlr3'
Description: Extends the mlr3 ML framework with spatio-temporal resampling
methods to account for the presence of spatiotemporal autocorrelation
(STAC) in predictor variables. STAC may cause highly biased
performance estimates in cross-validation if ignored.
Author: Patrick Schratz [aut, cre] ,
Marc Becker [aut] ,
Jannes Muenchow [ctb] ,
Michel Lang [ctb]
Maintainer: Patrick Schratz <patrick.schratz@gmail.com>
Diff between mlr3spatiotempcv versions 2.0.0 dated 2022-06-14 and 2.0.1 dated 2022-06-22
DESCRIPTION | 6 +- MD5 | 22 ++++----- NEWS.md | 8 +++ R/autoplot_spcv_cstf.R | 42 +++++++++++++----- README.md | 2 tests/testthat/setup-cluto.R | 24 +++++----- tests/testthat/test-2-autoplot.R | 2 tests/testthat/test-ResamplingRepeatedSptCVCluto.R | 4 + tests/testthat/test-ResamplingSptCVCluto.R | 4 + tests/testthat/test-autoplot_cluto.R | 2 tests/testthat/test-mlr3pipelines-graph-integration.R | 2 tests/testthat/test-mlr_sptcv_generic.R | 6 +- 12 files changed, 82 insertions(+), 42 deletions(-)
More information about mlr3spatiotempcv at CRAN
Permanent link
Title: Functions for Web Development
Description: Organizational framework for web development in R including functions to
serve static and dynamic content via HTTP methods, includes the html5 package to
create HTML pages, and offers other utility functions for common tasks related
to web development.
Author: Timothy Conwell
Maintainer: Timothy Conwell <timconwell@gmail.com>
Diff between webdeveloper versions 0.1.0 dated 2021-02-05 and 1.0.0 dated 2022-06-22
webdeveloper-0.1.0/webdeveloper/man/castDateString.Rd |only webdeveloper-0.1.0/webdeveloper/man/castNumeric.Rd |only webdeveloper-0.1.0/webdeveloper/man/doubleQuoteText.Rd |only webdeveloper-0.1.0/webdeveloper/man/fromInput.Rd |only webdeveloper-0.1.0/webdeveloper/man/jsonStr.Rd |only webdeveloper-0.1.0/webdeveloper/man/paramList.Rd |only webdeveloper-0.1.0/webdeveloper/man/quoteText.Rd |only webdeveloper-0.1.0/webdeveloper/man/sampleStr.Rd |only webdeveloper-0.1.0/webdeveloper/man/smart_options.Rd |only webdeveloper-0.1.0/webdeveloper/man/toInput.Rd |only webdeveloper-1.0.0/webdeveloper/DESCRIPTION | 13 webdeveloper-1.0.0/webdeveloper/MD5 | 30 webdeveloper-1.0.0/webdeveloper/NAMESPACE | 1 webdeveloper-1.0.0/webdeveloper/R/webdeveloper.R | 545 +++++----- webdeveloper-1.0.0/webdeveloper/man/create_options.Rd |only webdeveloper-1.0.0/webdeveloper/man/idAddAffixes.Rd |only webdeveloper-1.0.0/webdeveloper/man/idAddPrefix.Rd |only webdeveloper-1.0.0/webdeveloper/man/idAddSuffix.Rd |only webdeveloper-1.0.0/webdeveloper/man/idParseAffixes.Rd |only webdeveloper-1.0.0/webdeveloper/man/idParsePrefix.Rd |only webdeveloper-1.0.0/webdeveloper/man/idParseSuffix.Rd |only webdeveloper-1.0.0/webdeveloper/man/parseContentTypeHeader.Rd |only webdeveloper-1.0.0/webdeveloper/man/parseHTTP.Rd |only webdeveloper-1.0.0/webdeveloper/man/parseMultiPartFormData.Rd |only webdeveloper-1.0.0/webdeveloper/man/parseMultiPartFormParams.Rd |only webdeveloper-1.0.0/webdeveloper/man/parseQueryString.Rd |only webdeveloper-1.0.0/webdeveloper/man/serveHTTP.Rd | 15 27 files changed, 331 insertions(+), 273 deletions(-)
Title: Create HTML Content with Bootstrap 5 Classes and Layouts
Description: Functions are pre-configured to utilize Bootstrap 5 classes and
HTML structures to create Bootstrap-styled HTML quickly and easily. Includes
functions for creating common Bootstrap elements such as containers, rows, cols,
navbars, etc. Intended to be used with the html5 package. Learn more at
<https://getbootstrap.com/>.
Author: Timothy Conwell
Maintainer: Timothy Conwell <timconwell@gmail.com>
Diff between bsTools versions 0.1.0 dated 2021-02-09 and 1.0.0 dated 2022-06-22
bsTools-0.1.0/bsTools/R/bootstrap.R |only bsTools-0.1.0/bsTools/man/listExtract.Rd |only bsTools-1.0.0/bsTools/DESCRIPTION | 14 ++-- bsTools-1.0.0/bsTools/MD5 | 84 ++++++++++++++++-------- bsTools-1.0.0/bsTools/R/bsTools2.R |only bsTools-1.0.0/bsTools/R/sysdata.rda |only bsTools-1.0.0/bsTools/man/bs_accordion.Rd | 37 ++++++---- bsTools-1.0.0/bsTools/man/bs_alert.Rd |only bsTools-1.0.0/bsTools/man/bs_badge.Rd |only bsTools-1.0.0/bsTools/man/bs_black.Rd |only bsTools-1.0.0/bsTools/man/bs_blue.Rd |only bsTools-1.0.0/bsTools/man/bs_breadcrumb.Rd |only bsTools-1.0.0/bsTools/man/bs_card.Rd | 38 ++++++++-- bsTools-1.0.0/bsTools/man/bs_carousel.Rd | 16 ++-- bsTools-1.0.0/bsTools/man/bs_clearfix.Rd | 8 +- bsTools-1.0.0/bsTools/man/bs_col.Rd | 26 +------ bsTools-1.0.0/bsTools/man/bs_col_break.Rd | 9 +- bsTools-1.0.0/bsTools/man/bs_collapse.Rd | 18 ++--- bsTools-1.0.0/bsTools/man/bs_container.Rd | 27 ++----- bsTools-1.0.0/bsTools/man/bs_cyan.Rd |only bsTools-1.0.0/bsTools/man/bs_danger.Rd |only bsTools-1.0.0/bsTools/man/bs_dark.Rd |only bsTools-1.0.0/bsTools/man/bs_doc.Rd | 25 +++++-- bsTools-1.0.0/bsTools/man/bs_dropdown.Rd | 24 +++--- bsTools-1.0.0/bsTools/man/bs_figure.Rd | 33 ++++----- bsTools-1.0.0/bsTools/man/bs_flexbox.Rd |only bsTools-1.0.0/bsTools/man/bs_green.Rd |only bsTools-1.0.0/bsTools/man/bs_img.Rd | 38 ++-------- bsTools-1.0.0/bsTools/man/bs_indigo.Rd |only bsTools-1.0.0/bsTools/man/bs_info.Rd |only bsTools-1.0.0/bsTools/man/bs_input.Rd | 45 ++++++------ bsTools-1.0.0/bsTools/man/bs_light.Rd |only bsTools-1.0.0/bsTools/man/bs_modal.Rd | 52 ++++++++------ bsTools-1.0.0/bsTools/man/bs_nav.Rd | 48 +++---------- bsTools-1.0.0/bsTools/man/bs_navbar.Rd | 55 ++++++--------- bsTools-1.0.0/bsTools/man/bs_offcanvas.Rd |only bsTools-1.0.0/bsTools/man/bs_orange.Rd |only bsTools-1.0.0/bsTools/man/bs_pagination.Rd | 20 ++--- bsTools-1.0.0/bsTools/man/bs_pink.Rd |only bsTools-1.0.0/bsTools/man/bs_primary.Rd |only bsTools-1.0.0/bsTools/man/bs_purple.Rd |only bsTools-1.0.0/bsTools/man/bs_red.Rd |only bsTools-1.0.0/bsTools/man/bs_row.Rd | 29 +------- bsTools-1.0.0/bsTools/man/bs_secondary.Rd |only bsTools-1.0.0/bsTools/man/bs_select.Rd | 34 ++++----- bsTools-1.0.0/bsTools/man/bs_spinner.Rd |only bsTools-1.0.0/bsTools/man/bs_success.Rd |only bsTools-1.0.0/bsTools/man/bs_table.Rd | 62 ++++++----------- bsTools-1.0.0/bsTools/man/bs_teal.Rd |only bsTools-1.0.0/bsTools/man/bs_textarea.Rd | 44 +++++------- bsTools-1.0.0/bsTools/man/bs_toast.Rd |only bsTools-1.0.0/bsTools/man/bs_toast_container.Rd |only bsTools-1.0.0/bsTools/man/bs_toast_js.Rd |only bsTools-1.0.0/bsTools/man/bs_warning.Rd |only bsTools-1.0.0/bsTools/man/bs_white.Rd |only bsTools-1.0.0/bsTools/man/bs_yellow.Rd |only bsTools-1.0.0/bsTools/man/css_href_var.Rd |only bsTools-1.0.0/bsTools/man/css_integrity_var.Rd |only bsTools-1.0.0/bsTools/man/js_integrity_var.Rd |only bsTools-1.0.0/bsTools/man/js_src_var.Rd |only bsTools-1.0.0/bsTools/man/pasteCols.Rd |only bsTools-1.0.0/bsTools/man/sampleStr.Rd | 8 +- 62 files changed, 376 insertions(+), 418 deletions(-)
Title: Single-Cell Integrator and Batch Effect Remover
Description: Remove batch effects by projecting query batches into the reference batch space.
Author: Dailin Gan [aut, cre] ,
Jun Li [aut]
Maintainer: Dailin Gan <dgan@nd.edu>
Diff between SCIBER versions 0.1.1 dated 2022-04-28 and 0.1.2 dated 2022-06-22
SCIBER-0.1.1/SCIBER/man/SCIBER_int.Rd |only SCIBER-0.1.1/SCIBER/tests/testthat/test-SCIBER_int.R |only SCIBER-0.1.2/SCIBER/DESCRIPTION | 8 +++--- SCIBER-0.1.2/SCIBER/MD5 | 12 ++++----- SCIBER-0.1.2/SCIBER/NAMESPACE | 2 - SCIBER-0.1.2/SCIBER/R/main.R | 23 ++++++++++++++----- SCIBER-0.1.2/SCIBER/README.md | 2 - SCIBER-0.1.2/SCIBER/man/SCIBER.Rd |only SCIBER-0.1.2/SCIBER/tests/testthat/test-SCIBER.R |only 9 files changed, 29 insertions(+), 18 deletions(-)
Title: Manage R Configuration at the Command Line
Description: Configuration management using files (JSON, YAML, separated text),
JSON strings, and command line arguments. Command line arguments
can be used to override configuration. Period-separated command line
flags are parsed as hierarchical lists.
Author: Peter Solymos [aut, cre] ,
Analythium Solutions Inc. [cph, fnd]
Maintainer: Peter Solymos <peter@analythium.io>
Diff between rconfig versions 0.1.2 dated 2022-04-15 and 0.1.3 dated 2022-06-22
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NAMESPACE | 2 ++ NEWS.md | 5 +++++ R/config.R | 32 ++++++++++++++++++++++++++++---- R/parsers.R | 22 +++++++++++++++++++++- inst/examples/commands.R |only inst/examples/rconfig.yml | 3 +++ man/rconfig.Rd | 23 +++++++++++++++++++---- 9 files changed, 90 insertions(+), 20 deletions(-)
Title: Statistical Analysis of Textual Data
Description: Provides a set of functions devoted to multivariate exploratory statistics on textual data. Classical methods such as correspondence analysis and agglomerative hierarchical clustering are available. Chronologically constrained agglomerative hierarchical clustering enriched with labelled-by-words trees is offered. Given a division of the corpus into parts, their characteristic words and documents are identified. Further, accessing to 'FactoMineR' functions is very easy. Two of them are relevant in textual domain. MFA() addresses multiple lexical table allowing applications such as dealing with multilingual corpora as well as simultaneously analyzing both open-ended and closed questions in surveys. See <http://xplortext.unileon.es> for examples.
Author: Monica Becue-Bertaut, Ramon Alvarez-Esteban, Josep-Anton Sanchez-Espigares, Belchin Kostov
Maintainer: Ramon Alvarez-Esteban <ramon.alvarez@unileon.es>
Diff between Xplortext versions 1.4.1 dated 2021-01-14 and 1.5.1 dated 2022-06-22
DESCRIPTION | 22 MD5 | 72 - NAMESPACE | 41 - R/LabelTree.R | 35 R/LexCA.R | 26 R/LexCHCca.R | 902 +++++++++++++++--------- R/LexChar.R | 828 +++++++++++++--------- R/LexGalt.R | 50 - R/LexHCca.R | 56 + R/TextData.R | 1696 ++++++++++++++++++++++++----------------------- R/plot.LexCA.R | 6 R/plot.LexCHCca.R | 34 R/plot.LexChar.R | 46 - R/plot.LexGalt.R | 255 +++---- R/plot.LexHCca.R | 668 +++++++++--------- R/plot.TextData.R | 53 - R/print.LexCA.R | 1 R/print.LexChar.R | 389 ++++++---- R/print.TextData.R | 2 R/summary.LexCA.R | 2 R/summary.LexChar.R | 151 ++-- R/summary.TextData.R | 206 +++-- build/partial.rdb |binary inst/Xplortext.pdf |binary man/LabelTree.Rd | 8 man/LexCHCca.Rd | 70 + man/LexChar.Rd | 47 - man/LexGalt.Rd | 64 - man/LexHCca.Rd | 67 - man/TextData.Rd | 18 man/Xplortext-package.Rd | 4 man/plot.LexCHCca.Rd | 4 man/plot.LexChar.Rd | 3 man/plot.LexGalt.Rd | 10 man/plot.LexHCca.Rd | 8 man/summary.LexChar.Rd | 2 man/summary.TextData.Rd | 5 37 files changed, 3321 insertions(+), 2530 deletions(-)
Title: Fit, Simulate and Diagnose Models for Network Evolution Based on
Exponential-Family Random Graph Models
Description: An integrated set of extensions to the 'ergm' package to analyze and simulate network evolution based on exponential-family random graph models (ERGM). 'tergm' is a part of the 'statnet' suite of packages for network analysis. See Krivitsky and Handcock (2014) <doi:10.1111/rssb.12014> and Carnegie, Krivitsky, Hunter, and Goodreau (2015) <doi:10.1080/10618600.2014.903087>.
Author: Pavel N. Krivitsky [aut, cre] ,
Mark S. Handcock [aut, ths],
David R. Hunter [ctb],
Steven M. Goodreau [ctb, ths],
Martina Morris [ctb, ths],
Nicole Bohme Carnegie [ctb],
Carter T. Butts [ctb],
Ayn Leslie-Cook [ctb],
Skye Bender-deMoll [ctb],
Li Wang [...truncated...]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between tergm versions 4.0.2 dated 2021-07-28 and 4.1.0 dated 2022-06-22
tergm-4.0.2/tergm/build/partial.rdb |only tergm-4.0.2/tergm/man/ergm-hints.Rd |only tergm-4.0.2/tergm/man/ergm-proposals.Rd |only tergm-4.0.2/tergm/man/ergm-terms.Rd |only tergm-4.0.2/tergm/man/tergm-internal.Rd |only tergm-4.0.2/tergm/tests/basic_tests.R |only tergm-4.0.2/tergm/tests/burnin.R |only tergm-4.0.2/tergm/tests/dynamic_EGMME.simple.R |only tergm-4.0.2/tergm/tests/dynamic_MLE.R |only tergm-4.0.2/tergm/tests/dynamic_MLE_2.R |only tergm-4.0.2/tergm/tests/testthat/test-stergm-init.R |only tergm-4.1.0/tergm/DESCRIPTION | 18 tergm-4.1.0/tergm/LICENSE | 2 tergm-4.1.0/tergm/MD5 | 228 +++++---- tergm-4.1.0/tergm/R/AAA.R | 2 tergm-4.1.0/tergm/R/InitErgmConstraint.hints.R | 14 tergm-4.1.0/tergm/R/InitErgmProposal.DynMLE.R | 12 tergm-4.1.0/tergm/R/InitErgmProposal.DynMoME.R | 42 + tergm-4.1.0/tergm/R/InitErgmTerm.EGMME.R | 77 +++ tergm-4.1.0/tergm/R/InitErgmTerm.duration.R | 233 +++++++++- tergm-4.1.0/tergm/R/InitErgmTerm.netseries.R | 19 tergm-4.1.0/tergm/R/combine.networks.R | 4 tergm-4.1.0/tergm/R/control.simulate.stergm.R | 12 tergm-4.1.0/tergm/R/control.simulate.tergm.R | 13 tergm-4.1.0/tergm/R/control.stergm.R | 34 - tergm-4.1.0/tergm/R/control.tergm.R | 27 - tergm-4.1.0/tergm/R/ergmlhs.R | 2 tergm-4.1.0/tergm/R/impute.network.list.R | 2 tergm-4.1.0/tergm/R/is.durational.R | 2 tergm-4.1.0/tergm/R/is.lasttoggle.R | 2 tergm-4.1.0/tergm/R/print.combined_networks.R | 2 tergm-4.1.0/tergm/R/simulate.stergm.R | 24 - tergm-4.1.0/tergm/R/simulate.tergm.R | 23 tergm-4.1.0/tergm/R/stergm.R | 82 --- tergm-4.1.0/tergm/R/stergm.utils.R | 8 tergm-4.1.0/tergm/R/summary.statistics.networkDynamic.R | 2 tergm-4.1.0/tergm/R/tergm-deprecated.R | 2 tergm-4.1.0/tergm/R/tergm-package.R | 42 + tergm-4.1.0/tergm/R/tergm.CMLE.R | 2 tergm-4.1.0/tergm/R/tergm.EGMME.GD.R | 2 tergm-4.1.0/tergm/R/tergm.EGMME.R | 2 tergm-4.1.0/tergm/R/tergm.EGMME.SA.R | 2 tergm-4.1.0/tergm/R/tergm.EGMME.initialfit.R | 4 tergm-4.1.0/tergm/R/tergm.R | 22 tergm-4.1.0/tergm/R/tergm.getMCMCsample.R | 4 tergm-4.1.0/tergm/R/tergm.godfather.R | 15 tergm-4.1.0/tergm/R/zzz.R | 7 tergm-4.1.0/tergm/build/tergm.pdf |binary tergm-4.1.0/tergm/build/vignette.rds |binary tergm-4.1.0/tergm/inst/CITATION | 6 tergm-4.1.0/tergm/inst/NEWS.Rd | 39 + tergm-4.1.0/tergm/inst/doc/tergm4_conversion.html | 1 tergm-4.1.0/tergm/man/Change-ergmTerm.Rd |only tergm-4.1.0/tergm/man/Cross-ergmTerm.Rd |only tergm-4.1.0/tergm/man/Diss-ergmTerm.Rd |only tergm-4.1.0/tergm/man/EdgeAges-ergmTerm.Rd |only tergm-4.1.0/tergm/man/Form-ergmTerm.Rd |only tergm-4.1.0/tergm/man/Persist-ergmTerm.Rd |only tergm-4.1.0/tergm/man/combine_networks.Rd | 2 tergm-4.1.0/tergm/man/control.simulate.stergm.Rd | 12 tergm-4.1.0/tergm/man/control.simulate.tergm.Rd | 13 tergm-4.1.0/tergm/man/control.stergm.Rd | 49 +- tergm-4.1.0/tergm/man/control.tergm.Rd | 38 - tergm-4.1.0/tergm/man/control.tergm.godfather.Rd | 3 tergm-4.1.0/tergm/man/degrange.mean.age-ergmTerm.Rd |only tergm-4.1.0/tergm/man/degree.mean.age-ergmTerm.Rd |only tergm-4.1.0/tergm/man/discord-ergmHint.Rd |only tergm-4.1.0/tergm/man/discordBDStratTNT-ergmProposal.Rd |only tergm-4.1.0/tergm/man/discordTNT-ergmProposal.Rd |only tergm-4.1.0/tergm/man/edge.ages-ergmTerm.Rd |only tergm-4.1.0/tergm/man/edgecov.ages-ergmTerm.Rd |only tergm-4.1.0/tergm/man/edgecov.mean.age-ergmTerm.Rd |only tergm-4.1.0/tergm/man/edges.ageinterval-ergmTerm.Rd |only tergm-4.1.0/tergm/man/mean.age-ergmTerm.Rd |only tergm-4.1.0/tergm/man/nodefactor.mean.age-ergmTerm.Rd |only tergm-4.1.0/tergm/man/nodemix.mean.age-ergmTerm.Rd |only tergm-4.1.0/tergm/man/simulate.stergm.Rd | 48 +- tergm-4.1.0/tergm/man/simulate.tergm.Rd | 47 +- tergm-4.1.0/tergm/man/staticDiscordTNT-ergmProposal.Rd |only tergm-4.1.0/tergm/man/stergm.Rd | 103 +--- tergm-4.1.0/tergm/man/tergm-package.Rd | 43 + tergm-4.1.0/tergm/man/tergm.Rd | 45 + tergm-4.1.0/tergm/man/tergm.godfather.Rd | 6 tergm-4.1.0/tergm/man/tergm_MCMC_sample.Rd | 6 tergm-4.1.0/tergm/src/DynSA.c | 2 tergm-4.1.0/tergm/src/DynSA.h | 2 tergm-4.1.0/tergm/src/MCMCDyn.c | 2 tergm-4.1.0/tergm/src/MCMCDyn.h | 2 tergm-4.1.0/tergm/src/MHproposals_DynMLE.c | 2 tergm-4.1.0/tergm/src/changestat_netseries.h | 2 tergm-4.1.0/tergm/src/changestats_auxnet.c | 2 tergm-4.1.0/tergm/src/changestats_duration.c | 2 tergm-4.1.0/tergm/src/changestats_duration.h | 2 tergm-4.1.0/tergm/src/changestats_lasttoggle.c | 2 tergm-4.1.0/tergm/src/changestats_lasttoggle.h | 2 tergm-4.1.0/tergm/src/changestats_netseries.c | 2 tergm-4.1.0/tergm/src/changestats_operator.c | 82 +++ tergm-4.1.0/tergm/src/discordTNT.c | 2 tergm-4.1.0/tergm/src/godfather.c | 2 tergm-4.1.0/tergm/src/godfather.h | 2 tergm-4.1.0/tergm/src/include_stubs.c | 2 tergm-4.1.0/tergm/src/init.c | 2 tergm-4.1.0/tergm/src/tergm_changestats_auxnet.h | 2 tergm-4.1.0/tergm/src/tergm_model.h | 2 tergm-4.1.0/tergm/tests/degree.mean.age.R | 2 tergm-4.1.0/tergm/tests/dynamic_EGMME.R | 2 tergm-4.1.0/tergm/tests/dynamic_MLE_blockdiag.R | 6 tergm-4.1.0/tergm/tests/dynamic_MLE_blockdiag.bipartite.R | 6 tergm-4.1.0/tergm/tests/sim_gf_sum.R | 2 tergm-4.1.0/tergm/tests/simulate_networkDynamic.R | 2 tergm-4.1.0/tergm/tests/tergm_offset_tests.R | 2 tergm-4.1.0/tergm/tests/tergm_parallel.R | 2 tergm-4.1.0/tergm/tests/testthat.R | 2 tergm-4.1.0/tergm/tests/testthat/helper-CMLE.R |only tergm-4.1.0/tergm/tests/testthat/test-CMLE-2-bip.R |only tergm-4.1.0/tergm/tests/testthat/test-CMLE-2-dir.R |only tergm-4.1.0/tergm/tests/testthat/test-CMLE-2-und.R |only tergm-4.1.0/tergm/tests/testthat/test-CMLE-bip.R |only tergm-4.1.0/tergm/tests/testthat/test-CMLE-dir.R |only tergm-4.1.0/tergm/tests/testthat/test-CMLE-und.R |only tergm-4.1.0/tergm/tests/testthat/test-EGMME-errors.R | 2 tergm-4.1.0/tergm/tests/testthat/test-EGMME-initialfit.R | 10 tergm-4.1.0/tergm/tests/testthat/test-EGMME-simple.R |only tergm-4.1.0/tergm/tests/testthat/test-discord-proposals.R | 2 tergm-4.1.0/tergm/tests/testthat/test-durational-terms.R | 2 tergm-4.1.0/tergm/tests/testthat/test-edgelist_with_lasttoggle.R | 2 tergm-4.1.0/tergm/tests/testthat/test-extract-formulae.R | 8 tergm-4.1.0/tergm/tests/testthat/test-lasttoggle.R |only tergm-4.1.0/tergm/tests/testthat/test-nwelt.R | 2 tergm-4.1.0/tergm/tests/testthat/test-simulate.R | 14 tergm-4.1.0/tergm/tests/testthat/test-term-.SubsetStatistics.R | 2 tergm-4.1.0/tergm/tests/testthat/test-term-Change.R | 2 tergm-4.1.0/tergm/tests/testthat/test-term-Cross.R | 2 tergm-4.1.0/tergm/tests/testthat/test-term-EdgeAges.R |only tergm-4.1.0/tergm/tests/testthat/test-terms-Form-Persist-Diss.R | 2 135 files changed, 1050 insertions(+), 597 deletions(-)
Title: A Tool for Sensitivity Analysis in Structural Equation Modeling
Description: Perform sensitivity analysis in structural equation modeling using
meta-heuristic optimization methods (e.g., ant colony optimization and others).
The references for the proposed methods are:
(1) Leite, W., & Shen, Z., Marcoulides, K., Fish, C., & Harring, J. (2022).
<doi:10.1080/10705511.2021.1881786>
(2) Harring, J. R., McNeish, D. M., & Hancock, G. R. (2017)
<doi:10.1080/10705511.2018.1506925>;
(3) Fisk, C., Harring, J., Shen, Z., Leite, W., Suen, K., & Marcoulides, K.
(2022). <doi:10.1177/00131644211073121>;
(4) Socha, K., & Dorigo, M. (2008) <doi:10.1016/j.ejor.2006.06.046>.
We also thank Dr. Krzysztof Socha for sharing his research on ant colony optimization
algorithm with continuous domains and associated R code,
which provided the base for the development of this package.
Author: Walter Leite [aut, cre],
Zuchao Shen [aut],
Charles Fisk [aut],
Gail Fish [ctb],
YongSeok Lee [ctb],
Sanaz Nazari [ctb],
Jia Quan [ctb],
Eric Wright [ctb],
Huibin Zhang [ctb]
Maintainer: Walter Leite <walter.leite@coe.ufl.edu>
Diff between SEMsens versions 1.0.3 dated 2022-04-29 and 1.0.5 dated 2022-06-22
SEMsens-1.0.3/SEMsens/inst/doc/Hom-vignette.pdf |only SEMsens-1.0.3/SEMsens/inst/doc/SEMsens.pdf |only SEMsens-1.0.3/SEMsens/inst/doc/Smith12vignette.pdf |only SEMsens-1.0.3/SEMsens/inst/doc/Smith19_6phantom3.pdf |only SEMsens-1.0.5/SEMsens/DESCRIPTION | 8 ++-- SEMsens-1.0.5/SEMsens/MD5 | 30 +++++++++--------- SEMsens-1.0.5/SEMsens/NEWS.md | 7 +++- SEMsens-1.0.5/SEMsens/build/vignette.rds |binary SEMsens-1.0.5/SEMsens/inst/doc/Hom-vignette.Rmd | 15 ++------- SEMsens-1.0.5/SEMsens/inst/doc/Hom-vignette.html |only SEMsens-1.0.5/SEMsens/inst/doc/SEMsens.Rmd | 4 +- SEMsens-1.0.5/SEMsens/inst/doc/SEMsens.html |only SEMsens-1.0.5/SEMsens/inst/doc/Smith12vignette.Rmd | 18 +++------- SEMsens-1.0.5/SEMsens/inst/doc/Smith12vignette.html |only SEMsens-1.0.5/SEMsens/inst/doc/Smith19_6phantom3.Rmd | 10 ++---- SEMsens-1.0.5/SEMsens/inst/doc/Smith19_6phantom3.html |only SEMsens-1.0.5/SEMsens/vignettes/Hom-vignette.Rmd | 15 ++------- SEMsens-1.0.5/SEMsens/vignettes/SEMsens.Rmd | 4 +- SEMsens-1.0.5/SEMsens/vignettes/Smith12vignette.Rmd | 18 +++------- SEMsens-1.0.5/SEMsens/vignettes/Smith19_6phantom3.Rmd | 10 ++---- 20 files changed, 57 insertions(+), 82 deletions(-)
Title: Checks for Exclusion Criteria in Online Data
Description: Data that are collected through online sources such as Mechanical
Turk may require excluding rows because of IP address duplication,
geolocation, or completion duration. This package facilitates
exclusion of these data for Qualtrics datasets.
Author: Jeffrey R. Stevens [aut, cre, cph]
,
Joseph O'Brien [rev] ,
Julia Silge [rev]
Maintainer: Jeffrey R. Stevens <jeffrey.r.stevens@protonmail.com>
Diff between excluder versions 0.3.3 dated 2021-12-03 and 0.4.0 dated 2022-06-22
DESCRIPTION | 12 MD5 | 108 ++++---- NAMESPACE | 2 NEWS.md | 26 +- R/duplicates.R | 17 + R/duration.R | 11 R/ip.R | 17 + R/location.R | 17 + R/preview.R | 11 R/progress.R | 11 R/qualtrics_data.R | 42 +++ R/rename_columns.R |only R/resolution.R | 35 ++ R/use_labels.R |only README.md | 14 - build/vignette.rds |binary data/qualtrics_fetch.rda |only inst/doc/getting_started.html | 410 +++++++++++++++++++++++++++----- man/check_duplicates.Rd | 6 man/check_duration.Rd | 3 man/check_ip.Rd | 6 man/check_location.Rd | 6 man/check_preview.Rd | 3 man/check_progress.Rd | 3 man/check_resolution.Rd | 11 man/exclude_duplicates.Rd | 6 man/exclude_duration.Rd | 3 man/exclude_ip.Rd | 6 man/exclude_location.Rd | 6 man/exclude_preview.Rd | 3 man/exclude_progress.Rd | 3 man/exclude_resolution.Rd | 11 man/excluder-package.Rd | 4 man/figures/logo.png |only man/mark_duplicates.Rd | 6 man/mark_duration.Rd | 3 man/mark_ip.Rd | 6 man/mark_location.Rd | 6 man/mark_preview.Rd | 3 man/mark_progress.Rd | 3 man/mark_resolution.Rd | 11 man/qualtrics_fetch.Rd |only man/qualtrics_numeric.Rd | 1 man/qualtrics_raw.Rd | 1 man/qualtrics_text.Rd | 1 man/rename_columns.Rd |only man/use_labels.Rd |only tests/testthat/deprecated |only tests/testthat/test-duplicates.R | 42 +++ tests/testthat/test-duration.R | 42 +++ tests/testthat/test-ip.R | 42 +++ tests/testthat/test-location.R | 42 +++ tests/testthat/test-preview.R | 42 +++ tests/testthat/test-progress.R | 42 +++ tests/testthat/test-qualtrics_data.R | 62 ++++ tests/testthat/test-remove_label_rows.R | 7 tests/testthat/test-rename_columns.R |only tests/testthat/test-resolution.R | 57 ++++ tests/testthat/test-use_labels.R |only 59 files changed, 1100 insertions(+), 132 deletions(-)
Title: EcoPhyloMapper
Description: Facilitates the aggregation of species' geographic ranges from vector or raster spatial data, and that enables the calculation of various morphological and phylogenetic community metrics across geography. Citation: Title, PO, DL Swiderski and ML Zelditch (2022) <doi:10.1111/2041-210X.13914>.
Author: Pascal Title [aut, cre] ,
Donald Swiderski [aut],
Miriam Zelditch [aut]
Maintainer: Pascal Title <pascal.title@stonybrook.edu>
Diff between epm versions 1.0.1 dated 2022-05-19 and 1.0.2 dated 2022-06-22
DESCRIPTION | 10 ++++---- MD5 | 12 ++++++---- R/epm-package.R | 5 ++++ R/gridMetrics.R | 2 - R/plot.epmGrid.R | 62 +++++++++++++++++++++++++++++-------------------------- build |only inst |only man/epm.Rd | 5 ++++ 8 files changed, 56 insertions(+), 40 deletions(-)
Title: Monte Carlo Data Simulation Package
Description: Monte Carlo simulation allows to test different conditions given to the correct structural equation models. This package runs Monte Carlo simulations under different conditions (such as sample size or normality of data). Within the package data sets can be simulated and run based on the given model.
First, continuous and normal data sets are generated based on the given model. Later Fleishman's power method (1978) <DOI:10.1007/BF02293811> is used to add non-normality if exists.
When data generation is completed (or when generated data sets are given) model test can also be run.
Please cite as "Orçan, F. (2021). MonteCarloSEM: An R Package to Simulate Data for SEM. International Journal of Assessment Tools in Education, 8 (3), 704-713."
Author: Fatih Orcan [aut, cre]
Maintainer: Fatih Orcan <fatihorcan84@gmail.com>
Diff between MonteCarloSEM versions 0.0.4 dated 2022-05-26 and 0.0.5 dated 2022-06-22
MonteCarloSEM-0.0.4/MonteCarloSEM/R/sim_MCAR.R |only MonteCarloSEM-0.0.4/MonteCarloSEM/man/sim.MCAR.Rd |only MonteCarloSEM-0.0.5/MonteCarloSEM/DESCRIPTION | 6 ++--- MonteCarloSEM-0.0.5/MonteCarloSEM/MD5 | 18 ++++++++-------- MonteCarloSEM-0.0.5/MonteCarloSEM/NAMESPACE | 3 +- MonteCarloSEM-0.0.5/MonteCarloSEM/R/MCAR.R |only MonteCarloSEM-0.0.5/MonteCarloSEM/R/MNAR.R |only MonteCarloSEM-0.0.5/MonteCarloSEM/R/run.sem.sim.R | 2 - MonteCarloSEM-0.0.5/MonteCarloSEM/R/sim_Normal.R | 2 - MonteCarloSEM-0.0.5/MonteCarloSEM/man/MCAR.data.Rd |only MonteCarloSEM-0.0.5/MonteCarloSEM/man/MNAR.data.Rd |only MonteCarloSEM-0.0.5/MonteCarloSEM/man/fit.simulation.Rd | 2 - MonteCarloSEM-0.0.5/MonteCarloSEM/man/sim.normal.Rd | 2 - 13 files changed, 19 insertions(+), 16 deletions(-)
Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data are some of the functions included.
The standard textbook for such data is John Aitchison's (1986) "The statistical analysis of compositional data". Relevant papers include:
a) Tsagris M.T., Preston S. and Wood A.T.A. (2011). A data-based power transformation for compositional data. Fourth International International Workshop on Compositional Data Analysis.
b) Tsagris M. (2014). The k-NN algorithm for compositional data: a revised approach with and without zero values present. Journal of Data Science, 12(3):519--534.
c) Tsagris M. (2015). A novel, divergence based, regression for compositional data. Proceedings of the 28th Panhellenic Statistics Conference, 15-18 April 2015, Athens, Greece, 430--444.
d) Tsagris M. (2015). Regression analysis with compositional data containing zero values. Chilean Journal of Statistics, 6(2):47--57.
e) Tsagris M., Preston S. and Wood A.T.A. (2016). Improved supervised classification for compositional data using the alpha-transformation. Journal of Classification, 33(2):243--261. <doi:10.1007/s00357-016-9207-5>.
f) Tsagris M., Preston S. and Wood A.T.A. (2017). Nonparametric hypothesis testing for equality of means on the simplex. Journal of Statistical Computation and Simulation, 87(2): 406--422. <doi:10.1080/00949655.2016.1216554>.
g) Tsagris M. and Stewart C. (2018). A Dirichlet regression model for compositional data with zeros. Lobachevskii Journal of Mathematics, 39(3): 398--412. <doi:10.1134/S1995080218030198>.
h) Alenazi A. (2019). Regression for compositional data with compositional data as predictor variables with or without zero values. Journal of Data Science, 17(1): 219--238. <doi:10.6339/JDS.201901_17(1).0010>.
i) Tsagris M. and Stewart C. (2020). A folded model for compositional data analysis. Australian and New Zealand Journal of Statistics, 62(2):249--277. <doi:10.1111/anzs.12289>.
j) Tsagris M., Alenazi A. and Stewart C. (2021). Non-parametric regression models for compositional data. <arXiv:2002.05137>.
k) Alenazi A. (2021). Alenazi, A. (2021). A review of compositional data analysis and recent advances. Communications in Statistics-Theory and Methods (Accepted for publication). <doi:10.1080/03610926.2021.2014890>.
We further include functions for percentages (or proportions).
Author: Michail Tsagris [aut, cre],
Giorgos Athineou [aut],
Abdulaziz Alenazi [ctb],
Christos Adam [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Compositional versions 5.6 dated 2022-05-11 and 5.7 dated 2022-06-22
DESCRIPTION | 8 +-- MD5 | 112 +++++++++++++++++++++---------------------- NAMESPACE | 6 +- R/alfa.contour.R | 3 - R/alfa.tune.R | 7 +- R/alfareg.tune.R | 4 - R/beta.reg.R | 3 - R/bivt.contour.R | 3 - R/compnorm.contour.R | 3 - R/diri.contour.R | 3 - R/diri.est.R | 6 -- R/diri.reg.R | 3 - R/eel.test1.R | 2 R/eel.test2.R | 4 - R/el.test1.R | 8 +-- R/el.test2.R | 15 +++-- R/fd.contour.R | 3 - R/folded.contour.R | 3 - R/glmpcr.tune.R | 2 R/hd.meantest2.R | 4 - R/hotel1T2.R | 2 R/hotel2T2.R | 4 - R/ice.kernreg.R | 2 R/ice.pprcomp.R | 2 R/james.R | 12 ++-- R/js.compreg.R | 25 ++++----- R/kent.contour.R | 3 - R/kl.compreg.R | 22 ++++---- R/kl.compreg2.R | 6 +- R/makefolds.R | 9 +-- R/mix.compnorm.contour.R | 3 - R/mixdiri.contour.R | 3 - R/multinompcr.tune.R | 3 - R/ols.compreg.R | 27 +++++----- R/rda.tune.R | 3 - R/ridge.reg.R | 2 R/rmixcomp.R | 2 R/rmixdiri.R | 2 R/skewnorm.contour.R | 3 - R/symkl.compreg.R | 19 +++---- R/tv.compreg.R | 23 ++++---- R/zad.est.R | 3 - R/zadr.R | 25 ++++----- man/Compositional-package.Rd | 4 - man/acor.Rd | 3 - man/alfa.mix.norm.Rd | 2 man/bic.alfamixnorm.Rd | 2 man/bic.mixcompnorm.Rd | 2 man/colbeta.mle.Rd | 4 - man/fd.est.Rd | 2 man/frechet2.Rd | 2 man/kl.compreg.Rd | 13 +++- man/kl.compreg2.Rd | 7 +- man/mix.compnorm.Rd | 2 man/ols.compreg.Rd | 15 +++-- man/probout.Rd | 2 man/zadr.Rd | 5 + 57 files changed, 239 insertions(+), 233 deletions(-)
Title: Penalized Regression Calibration (PRC)
Description: Computes penalized regression calibration (PRC), a
statistical method that allows to predict survival from
high-dimensional longitudinal predictors. PRC is described in
Signorelli et al. (2021, <doi:10.1002/sim.9178>)).
Author: Mirko Signorelli [aut, cre, cph]
,
Pietro Spitali [ctb],
Roula Tsonaka [ctb]
Maintainer: Mirko Signorelli <msignorelli.rpackages@gmail.com>
Diff between pencal versions 1.2.0 dated 2022-05-30 and 1.2.1 dated 2022-06-22
DESCRIPTION | 6 ++-- MD5 | 51 ++++++++++++++++++------------------- R/fit_lmms.R | 22 +++------------ R/fit_mlpmms.R | 21 +++------------ R/fit_prclmm.R | 21 ++------------- R/fit_prcmlpmm.R | 5 +-- R/messaging.R |only R/pencox_baseline.R | 21 ++------------- R/performance_pencox_baseline.R | 40 ++++++++++------------------- R/performance_prc.R | 36 +++++++++----------------- R/summarize_lmms.R | 27 +++++-------------- R/summarize_mlpmms.R | 22 ++------------- R/survpred_prclmm.R | 33 ++++++++++++++--------- R/survpred_prcmlpmm.R | 2 - inst/NEWS.md | 17 ++++++++++++ inst/doc/pencal-vignette.html | 18 ++++++------- man/fit_lmms.Rd | 4 +- man/fit_mlpmms.Rd | 4 +- man/fit_prclmm.Rd | 5 +-- man/fit_prcmlpmm.Rd | 5 +-- man/pencox_baseline.Rd | 5 +-- man/performance_pencox_baseline.Rd | 4 +- man/performance_prc.Rd | 4 +- man/summarize_lmms.Rd | 5 +-- man/summarize_mlpmms.Rd | 5 +-- man/survpred_prclmm.Rd | 2 - man/survpred_prcmlpmm.Rd | 2 - 27 files changed, 155 insertions(+), 232 deletions(-)
Title: Pedigree Models
Description: Provides functions to estimate mixed probit models using, for
instance, pedigree data like in <doi:10.1002/sim.1603>. The models are also
commonly called liability threshold models. The approximation is
based on direct log marginal likelihood approximations like the randomized
Quasi-Monte Carlo suggested by <doi:10.1198/106186002394> with a similar
procedure to approximate the derivatives. The minimax tilting method
suggested by <doi:10.1111/rssb.12162> is also supported. Graph-based methods
are also provided that can be used to simplify pedigrees.
Author: Benjamin Christoffersen [cre, aut]
,
Alan Genz [cph],
Frank Bretz [cph],
Bjoern Bornkamp [cph],
Torsten Hothorn [cph],
Christophe Dutang [cph],
Diethelm Wuertz [cph],
R-core [cph],
Leo Belzile [cph],
Zdravko Botev [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between pedmod versions 0.2.2 dated 2022-05-27 and 0.2.3 dated 2022-06-22
DESCRIPTION | 10 MD5 | 52 +- NAMESPACE | 1 NEWS.md | 11 R/RcppExports.R | 62 ++ R/opt.R | 20 build/partial.rdb |binary build/vignette.rds |binary inst/doc/pedigree_partitioning.html | 22 inst/doc/pedmod.html | 621 ++++++++++++++------------- man/eval_pedigree.Rd | 2 man/mvndst.Rd | 72 +++ man/pedmod_opt.Rd | 2 man/pedmod_profile.Rd | 2 man/pedmod_profile_nleq.Rd | 7 man/pedmod_profile_prop.Rd | 12 man/pedmod_sqn.Rd | 2 src/RcppExports.cpp | 24 + src/cdfaprx.cpp | 512 +++++++++++++++++++++- src/cdfaprx.h | 434 ------------------ src/norm-cdf-approx.cpp | 25 + src/norm-cdf-approx.h | 55 +- src/pedigree-ll.cpp | 16 src/qtnorm.cpp | 5 src/r-api.cpp | 117 ++++- tests/testthat/loadings-dat-v-0.2.2-fail.RDS |only tests/testthat/test-man-pages.R | 35 + tests/testthat/test-misc.R |only 28 files changed, 1283 insertions(+), 838 deletions(-)
Title: Fair Data Adaptation with Quantile Preservation
Description: An implementation of the fair data adaptation with quantile
preservation described in Plecko & Meinshausen (2019) <arXiv:1911.06685>.
The adaptation procedure uses the specified causal graph to pre-process the
given training and testing data in such a way to remove the bias caused by
the protected attribute. The procedure uses tree ensembles for quantile
regression.
Author: Drago Plecko [aut, cre],
Nicolas Bennett [aut]
Maintainer: Drago Plecko <drago.plecko@stat.math.ethz.ch>
Diff between fairadapt versions 0.2.2 dated 2022-04-28 and 0.2.3 dated 2022-06-22
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- build/vignette.rds |binary inst/doc/jss.R | 20 ++++++++++++++------ inst/doc/jss.Rmd | 22 +++++++++++++++------- inst/doc/jss.pdf |binary inst/extdata/bm_quant.rds |binary tests/testthat/_snaps/generics/graph_cts.png |binary tests/testthat/_snaps/generics/graph_lin.png |binary tests/testthat/_snaps/generics/graph_rf.png |binary vignettes/jss.Rmd | 22 +++++++++++++++------- vignettes/jss.bib | 10 ++++++---- 12 files changed, 64 insertions(+), 38 deletions(-)
Title: R Commander Plugin for Teaching Statistical Methods
Description: R Commander plugin for teaching statistical methods.
It adds a new menu for making easier the teaching of the main concepts about the main statistical methods.
Author: Tom<e1>s R. Cotos Ya<f1>ez [aut] ,
Manuel A. Mosquera Rodr<ed>guez [aut, cre]
,
Ana P<e9>rez Gonz<e1>lez [aut] ,
Benigno Reguengo Lareo [aut]
Maintainer: Manuel A. Mosquera Rodr<ed>guez <mamrguez@uvigo.es>
Diff between RcmdrPlugin.TeachStat versions 1.1.0 dated 2020-12-04 and 1.1.1 dated 2022-06-22
DESCRIPTION | 11 +++-- MD5 | 13 +++---- NAMESPACE | 7 ++- NEWS | 9 ++++ R/utilities.R | 101 +++++++++++++++++++++++++++++++++++++++++++++++++++++++ build |only man/Depositos.Rd | 4 +- man/cars93.Rd | 8 ++-- 8 files changed, 133 insertions(+), 20 deletions(-)
More information about RcmdrPlugin.TeachStat at CRAN
Permanent link
Title: Download and Parse Public Data Released by B3 Exchange
Description: Download and parse public files released by B3 and convert them
into useful formats and data structures common to data analysis
practitioners.
Author: Wilson Freitas [aut, cre],
Marcelo Perlin [aut]
Maintainer: Wilson Freitas <wilson.freitas@gmail.com>
Diff between rb3 versions 0.0.3 dated 2022-05-29 and 0.0.4 dated 2022-06-22
DESCRIPTION | 6 - MD5 | 57 +++++++++-------- NAMESPACE | 53 +++++++++++++-- NEWS.md | 11 +++ R/convert_to.R | 2 R/download-data.R | 35 ++++++---- R/downloaders.R | 22 ++++-- R/fields.R | 10 +- R/marketdata.R | 16 ++-- R/rb3-package.R | 34 ++++++---- R/readers.R | 46 +++++++------ R/scraper-futures.R | 22 +++--- R/scraper-indexes.R | 12 +-- R/scraper-yc.R | 57 ++++++++--------- R/transmute.R | 10 +- R/util.R | 9 ++ R/zzz.R | 37 +++++++++-- inst/doc/Fetching-historical-future-rates.html | 4 - inst/doc/Fetching-historical-yield-curve.html | 6 - inst/extdata/GetDetailsCompany.json |only inst/extdata/GetListedCashDividends.json |only inst/extdata/GetListedSupplementCompany.json |only inst/extdata/NegociosBalcao.csv |only inst/extdata/templates/COTAHIST_DAILY.yaml | 1 inst/extdata/templates/COTAHIST_MONTHLY.yaml | 1 inst/extdata/templates/COTAHIST_YEARLY.yaml | 1 inst/extdata/templates/GetListedSupplementCompany.yaml | 2 inst/extdata/templates/NegociosBTB.yml |only inst/extdata/templates/NegociosBalcao.yml |only inst/extdata/templates/NegociosIntraday.yml |only tests/testthat/test-cotahist.R | 5 - tests/testthat/test-downloaders.R | 42 ++++++++++++ tests/testthat/test-readers.R | 24 +++++++ 33 files changed, 354 insertions(+), 171 deletions(-)
Title: Business Days Calculations and Utilities
Description: Business days calculations based on a list of holidays and
nonworking weekdays. Quite useful for fixed income and derivatives pricing.
Author: Wilson Freitas <wilson.freitas@gmail.com>
Maintainer: Wilson Freitas <wilson.freitas@gmail.com>
Diff between bizdays versions 1.0.10 dated 2022-05-10 and 1.0.11 dated 2022-06-22
DESCRIPTION | 6 MD5 | 68 - NEWS.md | 8 R/adjust.date.R | 368 ++--- R/bizdays.options.R | 148 +- R/bizdiff.R | 82 - R/bizseq.R | 96 - R/calendar-export.R | 202 +-- R/getbizdays.R | 26 R/getdate.R | 287 +++- R/offset.R | 148 +- inst/doc/Creating_Calendars.html | 4 inst/doc/Financial_and_non_financial.html | 4 inst/doc/bizdays.html | 4 inst/extdata/Brazil_ANBIMA.json | 1896 +++++++++++++++--------------- inst/extdata/Brazil_B3.json | 782 ++++++------ inst/extdata/actual.json | 6 inst/extdata/weekends.json | 18 man/adjust.date.Rd | 142 +- man/bizdays-package.Rd | 62 man/bizdays.Rd | 120 - man/bizdays.options.Rd | 80 - man/bizdayse.Rd | 114 - man/bizdiff.Rd | 66 - man/bizseq.Rd | 68 - man/calendar-holidays-weekdays.Rd | 90 - man/create.calendar.Rd | 250 +-- man/getbizdays.Rd | 71 - man/getdate.Rd | 123 + man/load_builtin_calendars.Rd | 66 - man/offset.Rd | 114 - tests/testthat/test-getbizdays.R | 6 tests/testthat/test-getdate.R | 22 tests/testthat/test-parsedate.R | 157 +- tests/testthat/test-register.R | 132 +- 35 files changed, 2997 insertions(+), 2839 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. The package includes methods for spectral fitting: Wilson
(2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018)
<DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] ,
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 1.22.0 dated 2022-05-27 and 2.0.0 dated 2022-06-22
DESCRIPTION | 12 MD5 | 587 +- NAMESPACE | 603 +- NEWS.md | 745 +- R/abfit.R | 2788 +++++----- R/amp_scaling.R | 522 +- R/basis_set.R | 810 +-- R/benchmark.R | 122 R/data.R | 4 R/dicom_reader.R | 300 - R/fit_display.R | 942 +-- R/fitting.R | 1704 +++--- R/gsl_functions.R | 454 - R/image_reg.R | 1072 ++-- R/interactive_plotting.R | 1002 +-- R/mol_parameters.R | 2644 +++++----- R/mrs_data_display.R | 1528 ++--- R/mrs_data_io.R | 792 +-- R/mrs_data_proc.R | 7778 +++++++++++++++--------------- R/mrs_read_dicom.R | 470 - R/mrs_read_ima.R | 140 R/mrs_read_lcm_raw.R | 92 R/mrs_read_list_data.R | 198 R/mrs_read_nifti.R | 190 R/mrs_read_paravis.R | 136 R/mrs_read_pfile.R | 412 - R/mrs_read_rda.R | 192 R/mrs_read_spar_sdat.R | 362 - R/mrs_read_twix.R | 1080 ++-- R/mrs_read_varian.R | 146 R/mrs_write_nifti.R | 122 R/pnnls.R | 134 R/precomp.R | 152 R/pulse_sequences.R | 1070 ++-- R/pulse_shapes.R | 24 R/qm_simulation.R | 998 +-- R/rats.R | 398 - R/spant.R | 386 - R/svs_batch_fit.R | 508 - R/tdsr.R | 144 R/utils.R | 1228 ++-- R/varpro.R | 502 - R/varpro_3_para.R | 460 - R/varpro_basic.R | 416 - build/vignette.rds |binary inst/CITATION | 84 inst/WORDLIST | 380 - inst/doc/abfit-baseline-opts.R | 106 inst/doc/abfit-baseline-opts.Rmd | 184 inst/doc/abfit-baseline-opts.html | 664 -- inst/doc/spant-basis-simulation.R | 85 inst/doc/spant-basis-simulation.Rmd | 147 inst/doc/spant-basis-simulation.html | 603 -- inst/doc/spant-intro.R | 108 inst/doc/spant-intro.Rmd | 186 inst/doc/spant-intro.html | 819 +-- inst/doc/spant-metabolite-simulation.R | 150 inst/doc/spant-metabolite-simulation.Rmd | 248 inst/doc/spant-metabolite-simulation.html | 816 +-- inst/doc/spant-preprocessing.R | 92 inst/doc/spant-preprocessing.Rmd | 152 inst/doc/spant-preprocessing.html | 593 -- inst/reports/mpress_gaba.Rmd | 86 man/Arg.mrs_data.Rd | 34 man/Conj.mrs_data.Rd | 34 man/Im.mrs_data.Rd | 34 man/Mod.mrs_data.Rd | 34 man/Ncoils.Rd | 28 man/Ndyns.Rd | 28 man/Npts.Rd | 34 man/Nspec.Rd | 28 man/Nx.Rd | 28 man/Ny.Rd | 28 man/Nz.Rd | 28 man/Re.mrs_data.Rd | 34 man/abfit_opts.Rd | 332 - man/abfit_opts_v1_9_0.Rd | 38 man/add_noise.Rd | 46 man/align.Rd | 78 man/apodise_xy.Rd | 42 man/append_basis.Rd | 38 man/apply_pvc.Rd | 52 man/array2mrs_data.Rd | 72 man/back_extrap_ar.Rd | 74 man/basis2mrs_data.Rd | 54 man/bc_als.Rd | 42 man/bc_constant.Rd | 40 man/beta2lw.Rd | 38 man/bin_spec.Rd |only man/calc_coil_noise_cor.Rd | 34 man/calc_coil_noise_sd.Rd | 34 man/calc_sd_poly.Rd | 42 man/check_lcm.Rd | 22 man/check_tqn.Rd | 22 man/circ_mask.Rd | 42 man/collapse_to_dyns.Rd | 52 man/comb_coils.Rd | 96 man/comb_fit_list_fit_tables.Rd | 76 man/comb_fit_list_result_tables.Rd | 48 man/comb_fit_tables.Rd | 46 man/comb_metab_ref.Rd | 38 man/conv_mrs.Rd | 38 man/crop_spec.Rd | 46 man/crop_xy.Rd | 42 man/crossprod_3d.Rd | 42 man/decimate_mrs_fd.Rd | 38 man/decimate_mrs_td.Rd | 46 man/def_N.Rd | 28 man/def_acq_paras.Rd | 80 man/def_fs.Rd | 28 man/def_ft.Rd | 28 man/def_nuc.Rd | 28 man/def_ref.Rd | 28 man/dicom_reader.Rd | 64 man/diff_mrs.Rd | 38 man/downsample_mrs_fd.Rd | 34 man/downsample_mrs_td.Rd | 42 man/elliptical_mask.Rd | 58 man/est_noise_sd.Rd | 54 man/fd2td.Rd | 34 man/fd_conv_filt.Rd | 36 man/fit_diags.Rd | 38 man/fit_mrs.Rd | 160 man/fit_res2csv.Rd | 36 man/fp_phase.Rd | 34 man/fp_scale.Rd | 38 man/fs.Rd | 34 man/ft_dyns.Rd | 48 man/ft_shift.Rd | 34 man/ft_shift_mat.Rd | 38 man/gausswin_2d.Rd | 62 man/gen_F.Rd | 42 man/gen_F_xy.Rd | 42 man/get_1h_brain_basis_paras_v3.Rd | 48 man/get_2d_psf.Rd | 64 man/get_acq_paras.Rd | 34 man/get_dyns.Rd | 40 man/get_even_dyns.Rd | 34 man/get_fh_dyns.Rd | 34 man/get_fit_map.Rd | 32 man/get_fp.Rd | 34 man/get_guassian_pulse.Rd | 36 man/get_head_dyns.Rd | 38 man/get_lcm_cmd.Rd | 22 man/get_metab.Rd | 34 man/get_mol_names.Rd | 32 man/get_mol_paras.Rd | 32 man/get_mrs_affine.Rd | 46 man/get_mrsi2d_seg.Rd | 50 man/get_mrsi_voi.Rd | 48 man/get_odd_dyns.Rd | 34 man/get_ref.Rd | 34 man/get_sh_dyns.Rd | 34 man/get_slice.Rd | 38 man/get_subset.Rd | 82 man/get_svs_voi.Rd | 38 man/get_tail_dyns.Rd | 38 man/get_td_amp.Rd | 50 man/get_tqn_cmd.Rd | 22 man/get_uncoupled_mol.Rd | 74 man/get_voi_cog.Rd | 34 man/gridplot.Rd | 32 man/gridplot.mrs_data.Rd | 76 man/hsvd.Rd | 52 man/hsvd_filt.Rd | 84 man/hsvd_vec.Rd | 58 man/hz.Rd | 42 man/ift_shift.Rd | 34 man/ift_shift_mat.Rd | 38 man/image.mrs_data.Rd | 124 man/img2kspace_xy.Rd | 34 man/int_spec.Rd | 46 man/interleave_dyns.Rd | 34 man/inv_even_dyns.Rd | 34 man/inv_odd_dyns.Rd | 34 man/is.def.Rd | 34 man/is_fd.Rd | 38 man/kspace2img_xy.Rd | 34 man/l2_reg.Rd | 90 man/lb.Rd | 60 man/lw2alpha.Rd | 38 man/lw2beta.Rd | 38 man/mask_dyns.Rd | 40 man/mask_fit_res.Rd | 46 man/mask_xy.Rd | 42 man/mask_xy_mat.Rd | 44 man/mat2mrs_data.Rd | 72 man/max_mrs.Rd | 34 man/max_mrs_interp.Rd | 38 man/mean.mrs_data.Rd | 38 man/mean_dyn_blocks.Rd | 38 man/mean_dyn_pairs.Rd | 34 man/mean_dyns.Rd | 34 man/mean_mrs_list.Rd | 34 man/median_dyns.Rd | 34 man/mrs_data2mat.Rd | 44 man/mvfftshift.Rd | 38 man/mvifftshift.Rd | 38 man/n2coord.Rd | 32 man/ortho3.Rd | 116 man/ortho3_inter.Rd | 68 man/pg_extrap_xy.Rd | 80 man/phase.Rd | 42 man/plot.fit_result.Rd | 154 man/plot.mrs_data.Rd | 210 man/plot_slice_fit.Rd | 66 man/plot_slice_fit_inter.Rd | 72 man/plot_slice_map_inter.Rd | 122 man/plot_voi_overlay.Rd | 44 man/plot_voi_overlay_seg.Rd | 40 man/ppm.Rd | 70 man/precomp.Rd | 40 man/print.fit_result.Rd | 32 man/print.mrs_data.Rd | 36 man/qn_states.Rd | 34 man/rats.Rd | 120 man/re_weighting.Rd | 42 man/read_basis.Rd | 42 man/read_basis_ac.Rd | 42 man/read_ima_coil_dir.Rd | 48 man/read_ima_dyn_dir.Rd | 48 man/read_mrs.Rd | 116 man/read_siemens_txt_hdr.Rd | 42 man/read_tqn_fit.Rd | 44 man/recon_twix_2d_mrsi.Rd | 34 man/rectangular_mask.Rd | 58 man/reexports.Rd | 38 man/rep_array_dim.Rd | 42 man/rep_dyn.Rd | 38 man/rep_mrs.Rd | 74 man/resample_voi.Rd | 42 man/reslice_to_mrs.Rd | 38 man/reson_table2mrs_data.Rd | 52 man/rm_dyns.Rd | 40 man/scale_amp_molal_pvc.Rd | 54 man/scale_amp_molar.Rd | 58 man/scale_amp_ratio.Rd | 40 man/scale_amp_water_ratio.Rd | 42 man/scale_mrs_amp.Rd | 40 man/scale_spec.Rd | 80 man/sd.Rd | 38 man/sd.mrs_data.Rd | 38 man/seconds.Rd | 34 man/set_def_acq_paras.Rd | 56 man/set_lcm_cmd.Rd | 28 man/set_mask_xy_mat.Rd | 44 man/set_precomp_mode.Rd | 28 man/set_precomp_verbose.Rd | 28 man/set_ref.Rd | 32 man/set_td_pts.Rd | 42 man/set_tqn_cmd.Rd | 28 man/shift.Rd | 42 man/shift_basis.Rd | 40 man/sim_noise.Rd | 74 man/sim_resonances.Rd | 104 man/sim_zero.Rd | 50 man/sort_basis.Rd | 34 man/spant-package.Rd | 94 man/spant_abfit_benchmark.Rd | 40 man/spant_mpress_drift.Rd | 32 man/spant_simulation_benchmark.Rd | 36 man/spec_decomp.Rd | 50 man/spec_op.Rd | 64 man/ssp.Rd | 48 man/stackplot.Rd | 32 man/stackplot.fit_result.Rd | 178 man/stackplot.mrs_data.Rd | 206 man/sub_mean_dyns.Rd | 34 man/sum_coils.Rd | 34 man/sum_dyns.Rd | 34 man/sum_mrs.Rd | 44 man/sum_mrs_list.Rd | 34 man/svs_1h_brain_analysis.Rd | 152 man/svs_1h_brain_batch_analysis.Rd | 86 man/td2fd.Rd | 34 man/tdsr.Rd | 52 man/varpro_basic_opts.Rd | 38 man/vec2mrs_data.Rd | 74 man/write_basis.Rd | 36 man/write_mrs.Rd | 44 man/write_mrs_nifti.Rd | 32 man/zero_fade_spec.Rd | 46 man/zero_nzoc.Rd | 38 man/zf.Rd | 58 man/zf_xy.Rd | 44 tests/testthat.R | 8 tests/testthat/test_fitting.R | 148 tests/testthat/test_nifti.R | 72 tests/testthat/test_preproc.R | 8 tests/testthat/test_qm_sim.R | 22 vignettes/abfit-baseline-opts.Rmd | 184 vignettes/spant-basis-simulation.Rmd | 147 vignettes/spant-intro.Rmd | 186 vignettes/spant-metabolite-simulation.Rmd | 248 vignettes/spant-preprocessing.Rmd | 152 295 files changed, 25596 insertions(+), 26603 deletions(-)
Title: Multiple Imputation of Covariates by Substantive Model
Compatible Fully Conditional Specification
Description: Implements multiple imputation of missing covariates by
Substantive Model Compatible Fully Conditional Specification.
This is a modification of the popular FCS/chained equations
multiple imputation approach, and allows imputation of missing
covariate values from models which are compatible with the user
specified substantive model.
Author: Jonathan Bartlett [aut, cre],
Ruth Keogh [aut],
Edouard F. Bonneville [aut],
Claus Thorn Ekstroem [ctb]
Maintainer: Jonathan Bartlett <j.w.bartlett@bath.ac.uk>
Diff between smcfcs versions 1.6.2 dated 2022-05-16 and 1.7.0 dated 2022-06-22
DESCRIPTION | 8 MD5 | 81 - NAMESPACE | 22 R/data.r | 286 +-- R/plot_convergence.R | 426 ++--- R/smcfcs.r | 2369 ++++++++++++++++----------------- R/smcfcs_parallel.r | 342 ++-- README.md | 22 build/partial.rdb |binary build/vignette.rds |binary inst/doc/smcfcs-vignette.R | 96 - inst/doc/smcfcs-vignette.Rmd | 278 +-- inst/doc/smcfcs-vignette.html | 1532 ++++++++++----------- inst/doc/smcfcs_coverror-vignette.R | 168 +- inst/doc/smcfcs_coverror-vignette.Rmd | 262 +-- inst/doc/smcfcs_coverror-vignette.html | 1188 ++++++++-------- man/ex_cc.Rd | 50 man/ex_compet.Rd | 48 man/ex_coxquad.Rd | 50 man/ex_dtsam.Rd | 44 man/ex_lininter.Rd | 44 man/ex_linquad.Rd | 48 man/ex_logisticquad.Rd | 48 man/ex_ncc.Rd | 52 man/ex_poisson.Rd | 46 man/plot.smcfcs.Rd | 118 - man/smcfcs.Rd | 449 +++--- man/smcfcs.casecohort.Rd | 203 +- man/smcfcs.dtsam.Rd | 231 +-- man/smcfcs.nestedcc.Rd | 217 +-- man/smcfcs.parallel.Rd | 164 +- tests/testthat/test_biasreduced.r |only tests/testthat/test_casecohort.r | 166 +- tests/testthat/test_coxph.r | 96 - tests/testthat/test_dtsam.r | 878 ++++++------ tests/testthat/test_errorchecks.R | 504 +++---- tests/testthat/test_measerror.r | 172 +- tests/testthat/test_nestedcc.R | 272 +-- tests/testthat/test_parallel.r | 418 ++--- tests/testthat/test_weibull.r | 126 - vignettes/smcfcs-vignette.Rmd | 278 +-- vignettes/smcfcs_coverror-vignette.Rmd | 262 +-- 42 files changed, 6050 insertions(+), 6014 deletions(-)
Title: Constrained L1-Minimization for Inverse (Covariance) Matrix
Estimation
Description: A robust constrained L1 minimization method for estimating a large sparse inverse covariance matrix (aka precision matrix), and recovering its support for building graphical models. The computation uses linear programming. The method was published in TT Cai, W Liu, X Luo (2011) <doi:10.1198/jasa.2011.tm10155>.
Author: T. Tony Cai, Weidong Liu and Xi Luo
Maintainer: Xi (Rossi) Luo <xi.rossi.luo@gmail.com>
Diff between clime versions 0.4.1 dated 2012-05-06 and 0.5.0 dated 2022-06-22
ChangeLog | 5 +++++ DESCRIPTION | 17 +++++++---------- MD5 | 7 ++++--- NAMESPACE | 1 + README.md |only 5 files changed, 17 insertions(+), 13 deletions(-)
Title: An Experiment Interface for 'DeepSqueak' Bioacoustics Research
Description: Data processing and visualizations for rodent vocalizations exported from
'DeepSqueak'. These functions are compatible with the 'SqueakR' Shiny Dashboard,
which can be used to visualize experimental results and analyses.
Author: Simon Ogundare [aut, cre]
Maintainer: Simon Ogundare <simon.ogundare@columbia.edu>
Diff between SqueakR versions 1.0.0 dated 2022-06-17 and 1.2.5 dated 2022-06-22
SqueakR-1.0.0/SqueakR/man/experiment_pipeline.Rd |only SqueakR-1.2.5/SqueakR/DESCRIPTION | 22 SqueakR-1.2.5/SqueakR/MD5 | 40 - SqueakR-1.2.5/SqueakR/NAMESPACE | 15 SqueakR-1.2.5/SqueakR/NEWS.md | 46 + SqueakR-1.2.5/SqueakR/R/analysis_functions.R | 51 + SqueakR-1.2.5/SqueakR/R/experiment_functions.R | 26 SqueakR-1.2.5/SqueakR/R/graphing_functions.R | 11 SqueakR-1.2.5/SqueakR/R/pipeline_functions.R | 133 ++++ SqueakR-1.2.5/SqueakR/R/shiny_dashboard.R |only SqueakR-1.2.5/SqueakR/README.md | 44 + SqueakR-1.2.5/SqueakR/inst/doc/SqueakR.R | 33 - SqueakR-1.2.5/SqueakR/inst/doc/SqueakR.Rmd | 151 +++-- SqueakR-1.2.5/SqueakR/inst/doc/SqueakR.html | 416 ++++++++------ SqueakR-1.2.5/SqueakR/man/SqueakR-package.Rd | 7 SqueakR-1.2.5/SqueakR/man/autosqueakRpipeline.Rd |only SqueakR-1.2.5/SqueakR/man/dashboard_images |only SqueakR-1.2.5/SqueakR/man/figures |only SqueakR-1.2.5/SqueakR/man/plotDensitySplitByDuration.Rd | 2 SqueakR-1.2.5/SqueakR/man/plotDensityStackedByDuration.Rd | 2 SqueakR-1.2.5/SqueakR/man/remove_experiment_data.Rd |only SqueakR-1.2.5/SqueakR/man/semisqueakRpipeline.Rd |only SqueakR-1.2.5/SqueakR/man/squeakRDashboard.Rd |only SqueakR-1.2.5/SqueakR/man/squeakrANOVA.Rd |only SqueakR-1.2.5/SqueakR/vignettes/SqueakR.Rmd | 151 +++-- 25 files changed, 850 insertions(+), 300 deletions(-)
Title: Small Area Estimation using Hierarchical Bayesian under Zero
Inflated Binomial Distribution
Description: Provides function for area level of small area estimation using hierarchical Bayesian (HB) method with Zero-Inflated Binomial distribution for variables of interest. Some dataset produced by a data generation are also provided. The 'rjags' package is employed to obtain parameter estimates. Model-based estimators involves the HB estimators which include the mean and the variation of mean.
Author: Rizqina Rahmati, Azka Ubaidillah
Maintainer: Rizqina Rahmati <221810583@stis.ac.id>
Diff between saeHB.ZIB versions 0.1.0 dated 2022-03-23 and 0.1.1 dated 2022-06-22
saeHB.ZIB-0.1.0/saeHB.ZIB/R/dataZIB.ns.R |only saeHB.ZIB-0.1.0/saeHB.ZIB/data/dataZIB.ns.rda |only saeHB.ZIB-0.1.0/saeHB.ZIB/inst/doc/Helpfile.R |only saeHB.ZIB-0.1.0/saeHB.ZIB/inst/doc/Helpfile.Rmd |only saeHB.ZIB-0.1.0/saeHB.ZIB/inst/doc/Helpfile.html |only saeHB.ZIB-0.1.0/saeHB.ZIB/man/dataZIB.ns.Rd |only saeHB.ZIB-0.1.0/saeHB.ZIB/vignettes/Helpfile.Rmd |only saeHB.ZIB-0.1.1/saeHB.ZIB/DESCRIPTION | 16 +- saeHB.ZIB-0.1.1/saeHB.ZIB/MD5 | 28 ++-- saeHB.ZIB-0.1.1/saeHB.ZIB/R/dataZIB.R | 8 - saeHB.ZIB-0.1.1/saeHB.ZIB/R/dataZIBns.R |only saeHB.ZIB-0.1.1/saeHB.ZIB/R/ziBinomial.R | 128 +++++++++------------- saeHB.ZIB-0.1.1/saeHB.ZIB/build/vignette.rds |binary saeHB.ZIB-0.1.1/saeHB.ZIB/data/dataZIB.rda |binary saeHB.ZIB-0.1.1/saeHB.ZIB/data/dataZIBns.rda |only saeHB.ZIB-0.1.1/saeHB.ZIB/inst/doc/saeHB_ZIB.R |only saeHB.ZIB-0.1.1/saeHB.ZIB/inst/doc/saeHB_ZIB.Rmd |only saeHB.ZIB-0.1.1/saeHB.ZIB/inst/doc/saeHB_ZIB.html |only saeHB.ZIB-0.1.1/saeHB.ZIB/man/dataZIB.Rd | 8 - saeHB.ZIB-0.1.1/saeHB.ZIB/man/dataZIBns.Rd |only saeHB.ZIB-0.1.1/saeHB.ZIB/man/ziBinomial.Rd | 25 +--- saeHB.ZIB-0.1.1/saeHB.ZIB/vignettes/saeHB_ZIB.Rmd |only 22 files changed, 93 insertions(+), 120 deletions(-)
Title: Empirical Dynamic Modeling ('EDM')
Description: An implementation of 'EDM' algorithms based on research software developed for internal use at the Sugihara Lab ('UCSD/SIO'). The package is implemented with 'Rcpp' wrappers around the 'cppEDM' library. It implements the 'simplex' projection method from Sugihara & May (1990) <doi:10.1038/344734a0>, the 'S-map' algorithm from Sugihara (1994) <doi:10.1098/rsta.1994.0106>, convergent cross mapping described in Sugihara et al. (2012) <doi:10.1126/science.1227079>, and, 'multiview embedding' described in Ye & Sugihara (2016) <doi:10.1126/science.aag0863>.
Author: Joseph Park [aut, cre] ,
Cameron Smith [aut] ,
George Sugihara [aut, ccp] ,
Ethan Deyle [aut] ,
Erik Saberski [ctb] ,
Hao Ye [ctb] ,
The Regents of the University of California [cph]
Maintainer: Joseph Park <JosephPark@IEEE.org>
Diff between rEDM versions 1.12.2 dated 2022-06-01 and 1.13.0 dated 2022-06-22
DESCRIPTION | 8 - MD5 | 56 +++++------ NEWS.md | 8 + R/EDM.R | 10 +- R/EDM_AuxFuncs.R | 22 +++- R/Examples.R | 60 ++++++------ R/LegacyInterface.R | 5 - man/CCM.Rd | 34 +++---- src/CCM.cpp | 15 +-- src/DataFrame.cpp | 21 ++-- src/RcppEDMCommon.cpp | 5 - src/RcppEDMCommon.h | 5 - src/cppEDM/src/API.cc | 52 +++++----- src/cppEDM/src/API.h | 42 ++++---- src/cppEDM/src/CCM.cc | 43 ++++++--- src/cppEDM/src/Common.h | 2 src/cppEDM/src/DateTime.cc | 186 +++++++++++++++++++-------------------- src/cppEDM/src/DateTime.h | 39 +++----- src/cppEDM/src/EDM.cc | 7 - src/cppEDM/src/EDM.h | 2 src/cppEDM/src/EDM_Formatting.cc | 32 +++--- src/cppEDM/src/EDM_Neighbors.cc | 26 ++--- src/cppEDM/src/Eval.cc | 84 ++++++++--------- src/cppEDM/src/Multiview.cc | 22 ++-- src/cppEDM/src/Parameter.cc | 65 +++++++------ src/cppEDM/src/Parameter.h | 4 src/cppEDM/src/SMap.cc | 31 +++--- src/cppEDM/src/Simplex.cc | 2 vignettes/rEDM-tutorial.html | 20 ++-- 29 files changed, 478 insertions(+), 430 deletions(-)
Title: Multivariate Probabilities of Scale Mixtures of Multivariate
Normal Distributions via the Genz and Bretz (2002) QRSVN Method
Description: Generates multivariate subgaussian stable probabilities using the QRSVN
algorithm as detailed in Genz and Bretz (2002) <DOI:10.1198/106186002394>
but by sampling positive stable variates not chi/sqrt(nu).
Author: Alan Genz [aut] ,
Bruce Swihart [aut, cre]
Maintainer: Bruce Swihart <bruce.swihart@gmail.com>
Diff between mvgb versions 0.0.2 dated 2022-03-30 and 0.0.3 dated 2022-06-22
DESCRIPTION | 8 +++++--- MD5 | 4 ++-- NEWS.md | 4 ++++ 3 files changed, 11 insertions(+), 5 deletions(-)
Title: Microbial Community Ecology Data Analysis
Description: A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.
Author: Chi Liu [aut, cre],
Felipe R. P. Mansoldo [ctb],
Umer Zeeshan Ijaz [ctb],
Chenhao Li [ctb],
Yang Cao [ctb],
Minjie Yao [ctb],
Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>
Diff between microeco versions 0.10.1 dated 2022-05-30 and 0.11.0 dated 2022-06-22
DESCRIPTION | 6 MD5 | 28 ++-- R/data.R | 4 R/microtable.R | 27 +-- R/trans_diff.R | 5 R/trans_env.R | 13 + R/trans_func.R | 10 - R/trans_network.R | 348 ++++++++++++++++++++++++++++++++++++++++++--------- R/trans_venn.R | 101 +++++++++++++- R/utility.R | 2 man/tidy_taxonomy.Rd | 2 man/trans_env.Rd | 18 ++ man/trans_func.Rd | 4 man/trans_network.Rd | 207 +++++++++++++++++++++++++----- man/trans_venn.Rd | 70 ++++++++++ 15 files changed, 696 insertions(+), 149 deletions(-)
Title: Creates Valid HTML5 Strings
Description: Generates valid HTML tag strings for HTML5 elements documented by Mozilla.
Attributes are passed as named lists, with names being the attribute name and values being the attribute value.
Attribute values are automatically double-quoted. To declare a DOCTYPE, wrap html() with function doctype().
Mozilla's documentation for HTML5 is available here: <https://developer.mozilla.org/en-US/docs/Web/HTML/Element>.
Elements marked as obsolete are not included.
Author: Timothy Conwell
Maintainer: Timothy Conwell <timconwell@gmail.com>
Diff between html5 versions 0.1.0 dated 2021-01-13 and 1.0.0 dated 2022-06-22
html5-0.1.0/html5/man/html_doc.Rd |only html5-0.1.0/html5/man/rb.Rd |only html5-0.1.0/html5/man/rtc.Rd |only html5-1.0.0/html5/DESCRIPTION | 19 html5-1.0.0/html5/MD5 | 236 html5-1.0.0/html5/R/html5.R |10266 +++++----------------------- html5-1.0.0/html5/R/sysdata.rda |only html5-1.0.0/html5/man/a.Rd | 108 html5-1.0.0/html5/man/abbr.Rd | 84 html5-1.0.0/html5/man/address.Rd | 84 html5-1.0.0/html5/man/area.Rd | 111 html5-1.0.0/html5/man/article.Rd | 84 html5-1.0.0/html5/man/aside.Rd | 84 html5-1.0.0/html5/man/attr_helper.Rd |only html5-1.0.0/html5/man/audio.Rd | 114 html5-1.0.0/html5/man/b.Rd | 84 html5-1.0.0/html5/man/base.Rd | 87 html5-1.0.0/html5/man/bdi.Rd | 84 html5-1.0.0/html5/man/bdo.Rd | 84 html5-1.0.0/html5/man/blockquote.Rd | 87 html5-1.0.0/html5/man/body.Rd | 138 html5-1.0.0/html5/man/boolean_attributes.Rd |only html5-1.0.0/html5/man/br.Rd | 84 html5-1.0.0/html5/man/button.Rd | 117 html5-1.0.0/html5/man/canvas.Rd | 90 html5-1.0.0/html5/man/caption.Rd | 84 html5-1.0.0/html5/man/cite.Rd | 84 html5-1.0.0/html5/man/code.Rd | 84 html5-1.0.0/html5/man/col.Rd | 84 html5-1.0.0/html5/man/colgroup.Rd | 84 html5-1.0.0/html5/man/data.Rd | 87 html5-1.0.0/html5/man/datalist.Rd | 84 html5-1.0.0/html5/man/dd.Rd | 84 html5-1.0.0/html5/man/del.Rd | 90 html5-1.0.0/html5/man/details.Rd | 87 html5-1.0.0/html5/man/dfn.Rd | 84 html5-1.0.0/html5/man/dialog.Rd | 87 html5-1.0.0/html5/man/div.Rd | 84 html5-1.0.0/html5/man/dl.Rd | 84 html5-1.0.0/html5/man/doctype.Rd |only html5-1.0.0/html5/man/dt.Rd | 84 html5-1.0.0/html5/man/em.Rd | 84 html5-1.0.0/html5/man/embed.Rd | 93 html5-1.0.0/html5/man/fieldset.Rd | 93 html5-1.0.0/html5/man/figcaption.Rd | 84 html5-1.0.0/html5/man/figure.Rd | 84 html5-1.0.0/html5/man/footer.Rd | 84 html5-1.0.0/html5/man/form.Rd | 111 html5-1.0.0/html5/man/h1.Rd | 84 html5-1.0.0/html5/man/h2.Rd | 84 html5-1.0.0/html5/man/h3.Rd | 84 html5-1.0.0/html5/man/h4.Rd | 84 html5-1.0.0/html5/man/h5.Rd | 84 html5-1.0.0/html5/man/h6.Rd | 84 html5-1.0.0/html5/man/head.Rd | 84 html5-1.0.0/html5/man/header.Rd | 84 html5-1.0.0/html5/man/hgroup.Rd | 84 html5-1.0.0/html5/man/hr.Rd | 81 html5-1.0.0/html5/man/html.Rd | 87 html5-1.0.0/html5/man/i.Rd | 84 html5-1.0.0/html5/man/iframe.Rd | 117 html5-1.0.0/html5/man/img.Rd | 117 html5-1.0.0/html5/man/input.Rd | 177 html5-1.0.0/html5/man/ins.Rd | 90 html5-1.0.0/html5/man/kbd.Rd | 84 html5-1.0.0/html5/man/label.Rd | 87 html5-1.0.0/html5/man/legend.Rd | 84 html5-1.0.0/html5/man/li.Rd | 87 html5-1.0.0/html5/man/link.Rd | 123 html5-1.0.0/html5/man/main.Rd | 84 html5-1.0.0/html5/man/map.Rd | 87 html5-1.0.0/html5/man/mark.Rd | 84 html5-1.0.0/html5/man/menu.Rd | 87 html5-1.0.0/html5/man/meta.Rd | 93 html5-1.0.0/html5/man/meter.Rd | 105 html5-1.0.0/html5/man/nav.Rd | 84 html5-1.0.0/html5/man/noscript.Rd | 84 html5-1.0.0/html5/man/object.Rd | 108 html5-1.0.0/html5/man/ol.Rd | 93 html5-1.0.0/html5/man/optgroup.Rd | 90 html5-1.0.0/html5/man/option.Rd | 96 html5-1.0.0/html5/man/output.Rd | 93 html5-1.0.0/html5/man/p.Rd | 84 html5-1.0.0/html5/man/param.Rd | 87 html5-1.0.0/html5/man/picture.Rd | 84 html5-1.0.0/html5/man/pre.Rd | 84 html5-1.0.0/html5/man/progress.Rd | 90 html5-1.0.0/html5/man/q.Rd | 87 html5-1.0.0/html5/man/rp.Rd | 84 html5-1.0.0/html5/man/rt.Rd | 84 html5-1.0.0/html5/man/ruby.Rd | 84 html5-1.0.0/html5/man/s.Rd | 84 html5-1.0.0/html5/man/samp.Rd | 84 html5-1.0.0/html5/man/script.Rd | 111 html5-1.0.0/html5/man/section.Rd | 84 html5-1.0.0/html5/man/select.Rd | 108 html5-1.0.0/html5/man/slot.Rd | 87 html5-1.0.0/html5/man/small.Rd | 84 html5-1.0.0/html5/man/source.Rd | 96 html5-1.0.0/html5/man/span.Rd | 84 html5-1.0.0/html5/man/strong.Rd | 84 html5-1.0.0/html5/man/style.Rd | 93 html5-1.0.0/html5/man/sub.Rd | 84 html5-1.0.0/html5/man/summary.Rd | 84 html5-1.0.0/html5/man/sup.Rd | 84 html5-1.0.0/html5/man/table.Rd | 84 html5-1.0.0/html5/man/tag_helper.Rd |only html5-1.0.0/html5/man/tbody.Rd | 84 html5-1.0.0/html5/man/td.Rd | 93 html5-1.0.0/html5/man/template.Rd | 84 html5-1.0.0/html5/man/textarea.Rd | 123 html5-1.0.0/html5/man/tfoot.Rd | 84 html5-1.0.0/html5/man/th.Rd | 99 html5-1.0.0/html5/man/thead.Rd | 84 html5-1.0.0/html5/man/time.Rd | 87 html5-1.0.0/html5/man/title.Rd | 84 html5-1.0.0/html5/man/tr.Rd | 84 html5-1.0.0/html5/man/track.Rd | 96 html5-1.0.0/html5/man/u.Rd | 84 html5-1.0.0/html5/man/ul.Rd | 84 html5-1.0.0/html5/man/var.Rd | 84 html5-1.0.0/html5/man/video.Rd | 141 html5-1.0.0/html5/man/wbr.Rd | 84 123 files changed, 3349 insertions(+), 17348 deletions(-)
Title: Tools for Clinical Research
Description: Every research team have their own script for data management, statistics and
most importantly hemodynamic indices. The purpose is to standardize scripts
utilized in clinical research. The hemodynamic indices can be used in a long-format dataframe,
and add both periods of interest (trigger-periods), and delete artifacts with deleter-files.
Transfer function analysis (Claassen et al. (2016) <doi:10.1177/0271678X15626425>) and
Mx (Czosnyka et al. (1996) <doi:10.1161/01.str.27.10.1829>) can be calculated using this package.
Author: Markus Harboe Olsen [cre, aut],
Christian Riberholt [ctb],
Ronan Berg [ctb],
Kirsten Moeller [ctb],
Janus Christian Jakobsen [ctb],
Aksel Karl Georg Jensen [ctb]
Maintainer: Markus Harboe Olsen <oel@oelfam.com>
Diff between clintools versions 0.9.3 dated 2022-02-12 and 0.9.4 dated 2022-06-22
DESCRIPTION | 9 +++--- MD5 | 10 ++++-- NAMESPACE | 81 +++++++++++++++++++++++++++++++------------------------ NEWS.md | 5 +++ R/dilations.R |only R/sRCT.R | 2 - man/dilations.Rd |only 7 files changed, 63 insertions(+), 44 deletions(-)
Title: Multidimensional Scaling of Asymmetric Proximities
Description: Multidimensional scaling models and methods for the visualization and analysis of asymmetric proximity data <doi:10.1111/j.2044-8317.1996.tb01078.x>. An asymmetric data matrix has the same number of rows and columns, and these rows and columns refer to the same set of objects. At least some elements in the upper-triangle are different from the corresponding elements in the lower triangle. An example of an asymmetric matrix is a student migration table, where the rows correspond to the countries of origin of the students and the columns to the destination countries. This package provides algorithms for three multidimensional scaling models. These are the slide-vector model <doi:10.1007/BF02294474>, a scaling model with unique dimensions and the asymscal model for asymmetric multidimensional scaling. Furthermore, a heat map for skew-symmetric data, and the decomposition of asymmetry are provided for the exploratory analysis of asymmetric tables.
Author: Berrie Zielman
Maintainer: Berrie Zielman <berrie.zielman@gmail.com>
Diff between asymmetry versions 2.0.3 dated 2021-01-22 and 2.0.4 dated 2022-06-22
asymmetry-2.0.3/asymmetry/R/plot.mdsunique.R |only asymmetry-2.0.3/asymmetry/R/print.mdsunique.R |only asymmetry-2.0.3/asymmetry/R/print.slidevector.R |only asymmetry-2.0.3/asymmetry/R/summary.mdsunique.R |only asymmetry-2.0.3/asymmetry/R/summary.slidevector.R |only asymmetry-2.0.3/asymmetry/data/Englishtowns.RData |only asymmetry-2.0.3/asymmetry/man/plot.mdsunique.Rd |only asymmetry-2.0.3/asymmetry/man/plot.slidevector.Rd |only asymmetry-2.0.3/asymmetry/man/print.mdsunique.Rd |only asymmetry-2.0.3/asymmetry/man/print.slidevector.Rd |only asymmetry-2.0.3/asymmetry/man/summary.mdsunique.Rd |only asymmetry-2.0.3/asymmetry/man/summary.slidevector.Rd |only asymmetry-2.0.4/asymmetry/DESCRIPTION | 12 asymmetry-2.0.4/asymmetry/MD5 | 42 - asymmetry-2.0.4/asymmetry/R/asymscal.R | 7 asymmetry-2.0.4/asymmetry/R/mdsunique.R | 49 + asymmetry-2.0.4/asymmetry/R/skewsymmetry.R | 2 asymmetry-2.0.4/asymmetry/R/slidevector.R | 52 + asymmetry-2.0.4/asymmetry/build/partial.rdb |binary asymmetry-2.0.4/asymmetry/build/vignette.rds |binary asymmetry-2.0.4/asymmetry/data/Englishtowns.rda |only asymmetry-2.0.4/asymmetry/inst/doc/asymmetry.html | 593 +++++++++++++++---- asymmetry-2.0.4/asymmetry/man/asymscal.Rd | 18 asymmetry-2.0.4/asymmetry/man/mdsunique.Rd | 21 asymmetry-2.0.4/asymmetry/man/plot.Rd |only asymmetry-2.0.4/asymmetry/man/plot.skewsymmetry.Rd | 2 asymmetry-2.0.4/asymmetry/man/skewsymmetry.Rd | 5 asymmetry-2.0.4/asymmetry/man/slidevector.Rd | 19 asymmetry-2.0.4/asymmetry/man/studentmigration.Rd | 2 29 files changed, 637 insertions(+), 187 deletions(-)
Title: Statistical Methods for Psychologists
Description: Implements confidence interval and sample size methods that are especially useful in psychological research. The methods can be applied in 1-group, 2-group, paired-samples, and multiple-group designs and to a variety of parameters including means, medians, proportions, slopes, standardized mean differences, standardized linear contrasts of means, plus several measures of correlation and association. The confidence intervals and sample size functions are applicable to single parameters as well as differences, ratios, and linear contrasts of parameters. The sample size functions can be used to approximate the sample size needed to estimate a parameter or function of parameters with desired confidence interval precision or to perform a variety of hypothesis tests (directional two-sided, equivalence, superiority, noninferiority) with desired power. For details see: Statistical Methods for Psychologists, Volumes 1 – 4, <https://dgbonett.sites.ucsc.edu/>.
Author: Douglas G. Bonett [aut, cre],
Robert J. Calin-Jageman [ctb]
Maintainer: Douglas G. Bonett <dgbonett@ucsc.edu>
Diff between statpsych versions 1.0.0 dated 2021-09-09 and 1.1.0 dated 2022-06-22
DESCRIPTION | 10 MD5 | 168 ++++---- NAMESPACE | 14 NEWS.md |only R/statpsych1.R | 812 +++++++++++++++++++++++++++++++++------ R/statpsych2.R | 297 +++++++++++--- R/statpsych3.R | 303 ++++++++++---- README.md |only build/partial.rdb |binary inst/REFERENCES.bib | 17 man/ci.agree2.Rd |only man/ci.biphi.Rd | 10 man/ci.cod2.Rd |only man/ci.condslope.Rd | 8 man/ci.condslope.log.Rd | 8 man/ci.cor.Rd | 4 man/ci.cor.dep.Rd | 6 man/ci.cor2.Rd | 8 man/ci.cor2.gen.Rd | 4 man/ci.cronbach.Rd | 4 man/ci.etasqr.Rd |only man/ci.fisher.Rd | 2 man/ci.indirect.Rd | 4 man/ci.lc.gen.bs.Rd |only man/ci.lc.glm.Rd |only man/ci.lc.mean.bs.Rd | 8 man/ci.lc.median.bs.Rd | 4 man/ci.lc.reg.Rd | 4 man/ci.lc.stdmean.bs.Rd | 4 man/ci.lc.stdmean.ws.Rd | 6 man/ci.mad1.Rd | 3 man/ci.mann.Rd | 2 man/ci.mape.Rd | 6 man/ci.mean.ps.Rd | 15 man/ci.mean1.Rd | 8 man/ci.mean2.Rd | 12 man/ci.median.ps.Rd | 4 man/ci.pairs.prop.bs.Rd | 2 man/ci.pairs.prop1.Rd | 4 man/ci.pbcor.Rd | 8 man/ci.phi.Rd | 6 man/ci.prop2.Rd | 4 man/ci.random.anova1.Rd | 4 man/ci.ratio.prop2.Rd | 6 man/ci.reliability.Rd |only man/ci.rsqr.Rd |only man/ci.sign1.Rd |only man/ci.slope.mean.bs.Rd |only man/ci.slope.prop.bs.Rd | 8 man/ci.spcor.Rd | 4 man/ci.spear2.Rd | 8 man/ci.stdmean.ps.Rd | 10 man/ci.stdmean.strat.Rd | 19 man/ci.stdmean1.Rd | 4 man/ci.stdmean2.Rd | 12 man/ci.tukey.Rd | 23 - man/ci.var.upper.Rd | 4 man/etasqr.gen.2way.Rd |only man/pi.score1.Rd | 4 man/pi.score2.Rd | 8 man/size.ci.cronbach.Rd | 4 man/size.ci.lc.ancova.Rd | 22 - man/size.ci.lc.mean.ws.Rd | 5 man/size.ci.lc.prop.bs.Rd | 8 man/size.ci.lc.stdmean.ws.Rd | 4 man/size.ci.mean.ps.Rd | 8 man/size.ci.prop.ps.Rd | 6 man/size.ci.prop2.Rd | 8 man/size.ci.ratio.prop.ps.Rd | 2 man/size.ci.ratio.prop2.Rd | 5 man/size.ci.rsqr.Rd | 2 man/size.ci.stdmean.ps.Rd | 4 man/size.equiv.prop.ps.Rd | 21 - man/size.equiv.prop2.Rd | 12 man/size.supinf.prop.ps.Rd | 8 man/size.supinf.prop2.Rd | 14 man/size.test.cor.Rd | 2 man/size.test.cronbach.Rd | 4 man/size.test.lc.ancova.Rd | 14 man/size.test.lc.mean.ws.Rd | 6 man/size.test.lc.prop.bs.Rd | 14 man/size.test.prop.ps.Rd | 8 man/size.test.slope.Rd | 2 man/test.anova1.bs.Rd | 6 man/test.kurtosis.Rd |only man/test.mono.mean.bs.Rd |only man/test.mono.prop.bs.Rd |only man/test.prop.bs.Rd | 2 man/test.prop2.Rd | 4 man/test.skew.Rd |only tests/testthat/test_statpsych1.R | 132 ++++++ tests/testthat/test_statpsych2.R | 51 ++ tests/testthat/test_statpsych3.R | 29 + 93 files changed, 1742 insertions(+), 558 deletions(-)
Title: Estimate (Generalized) Linear Mixed Models with Factor
Structures
Description: Utilizes the 'lme4' and 'optimx' packages (previously the optim()
function from 'stats') to estimate (generalized) linear mixed models (GLMM)
with factor structures using a profile likelihood approach, as outlined in
Jeon and Rabe-Hesketh (2012) <doi:10.3102/1076998611417628> and
Rockwood and Jeon (2019) <doi:10.1080/00273171.2018.1516541>.
Factor analysis and item response models can be extended to allow
for an arbitrary number of nested and crossed random effects,
making it useful for multilevel and cross-classified models.
Author: Minjeong Jeon [aut],
Nicholas Rockwood [aut, cre]
Maintainer: Nicholas Rockwood <njrockwood@gmail.com>
Diff between PLmixed versions 0.1.5 dated 2020-12-14 and 0.1.6 dated 2022-06-22
PLmixed-0.1.5/PLmixed/data/datalist |only PLmixed-0.1.6/PLmixed/DESCRIPTION | 10 PLmixed-0.1.6/PLmixed/MD5 | 15 PLmixed-0.1.6/PLmixed/R/PLmixed_main_function.R | 8 PLmixed-0.1.6/PLmixed/build/vignette.rds |binary PLmixed-0.1.6/PLmixed/inst/doc/PLmixed_intro.R | 28 - PLmixed-0.1.6/PLmixed/inst/doc/PLmixed_intro.Rmd | 2 PLmixed-0.1.6/PLmixed/inst/doc/PLmixed_intro.html | 345 ++++++---------------- PLmixed-0.1.6/PLmixed/vignettes/PLmixed_intro.Rmd | 2 9 files changed, 134 insertions(+), 276 deletions(-)
More information about OpenTreeChronograms at CRAN
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Title: Nonlinear Mixed Effects Models in Population PK/PD, Estimation
Routines
Description: Fit and compare nonlinear mixed-effects models in
differential equations with flexible dosing information commonly seen
in pharmacokinetics and pharmacodynamics (Almquist, Leander, and
Jirstrand 2015 <doi:10.1007/s10928-015-9409-1>). Differential equation
solving is by compiled C code provided in the 'rxode2' package (Wang,
Hallow, and James 2015 <doi:10.1002/psp4.12052>).
Author: Matthew Fidler [aut, cre] ,
Yuan Xiong [aut],
Rik Schoemaker [aut] ,
Justin Wilkins [aut] ,
Wenping Wang [aut],
Robert Leary [ctb],
Mason McComb [ctb] ,
Vipul Mann [aut],
Mirjam Trame [ctb],
Mahmoud Abdelwahab [ctb],
Teun Post [ctb],
Richard Hooijmai [...truncated...]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nlmixr2est versions 2.0.7 dated 2022-05-23 and 2.0.8 dated 2022-06-22
DESCRIPTION | 117 +++++++++++++--------------- MD5 | 50 ++++++------ NAMESPACE | 3 NEWS.md | 52 ++++++++++-- R/augPred.R | 4 R/broom.R | 1 R/focei.R | 12 ++ R/nlmixr2_md5.R | 2 R/nlmixr2output.R | 8 + R/nmObjGet.R | 9 ++ R/saemRxUiGet.R | 14 ++- R/splitModelRxUiGet.R |only R/vpc.R | 1 inst/tools/workaround.R | 10 ++ man/figures/README-example-1.png |binary man/nmObjGet.Rd | 3 man/reexports.Rd | 4 man/tableControl.Rd | 2 src/Makevars.in | 2 src/censEst.h |only src/inner.cpp | 152 +++---------------------------------- src/npde.cpp | 21 ++++- src/saem.cpp | 55 ++++++++----- tests/testthat/test-00-reload-ll.R |only tests/testthat/test-broom.R | 6 + tests/testthat/test-nmobj.R |only tests/testthat/test-np.R | 30 +++++++ tests/testthat/test-npde.R | 69 +++++++++++++++- 28 files changed, 353 insertions(+), 274 deletions(-)
More information about NasdaqDataLink at CRAN
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More information about multiActionButton at CRAN
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Title: Presentation-Ready Data Summary and Analytic Result Tables
Description: Creates presentation-ready tables summarizing data
sets, regression models, and more. The code to create the tables is
concise and highly customizable. Data frames can be summarized with
any function, e.g. mean(), median(), even user-written functions.
Regression models are summarized and include the reference rows for
categorical variables. Common regression models, such as logistic
regression and Cox proportional hazards regression, are automatically
identified and the tables are pre-filled with appropriate column
headers.
Author: Daniel D. Sjoberg [aut, cre] ,
Michael Curry [aut] ,
Joseph Larmarange [aut] ,
Jessica Lavery [aut] ,
Karissa Whiting [aut] ,
Emily C. Zabor [aut] ,
Xing Bai [ctb],
Esther Drill [ctb] ,
Jessica Flynn [ctb] ,
Margie Hannum [ctb] ,
Stephanie Lobaugh [c [...truncated...]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between gtsummary versions 1.6.0 dated 2022-04-25 and 1.6.1 dated 2022-06-22
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More information about GeneralizedWendland at CRAN
Permanent link
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cre, cph],
Paul Buerkner [ctb],
Maxime Herve [ctb],
Jonathon Love [ctb],
Fernando Miguez [ctb],
Hannes Riebl [ctb],
Henrik Singmann [ctb]
Maintainer: Russell V. Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.7.4-1 dated 2022-05-14 and 1.7.5 dated 2022-06-22
DESCRIPTION | 8 - MD5 | 98 ++++++++++----------- NAMESPACE | 4 NEWS.md | 25 +++++ R/MCMC-support.R | 18 +++- R/cld-emm.R | 2 R/emm-list.R | 127 +++++++++++++++++++++------- R/emmGrid-methods.R | 1 R/emmeans.R | 1 R/emmip.R | 1 R/emtrends.R | 3 R/factors.R | 10 +- R/glht-support.R | 2 R/multiv.R | 1 R/pwpp.R | 2 R/ref-grid.R | 10 ++ R/summary.R | 76 ++++++++++++++-- R/test.R | 166 +++++++++++++++++++++++++++---------- R/zzz.R | 2 inst/doc/FAQs.Rmd | 2 inst/doc/FAQs.html | 8 - inst/doc/basics.html | 4 inst/doc/comparisons.html | 8 - inst/doc/confidence-intervals.R | 11 ++ inst/doc/confidence-intervals.Rmd | 37 +++++++- inst/doc/confidence-intervals.html | 84 +++++++++++++++++- inst/doc/interactions.html | 16 +-- inst/doc/messy-data.html | 4 inst/doc/models.Rmd | 4 inst/doc/models.html | 10 +- inst/doc/predictions.html | 4 inst/doc/sophisticated.html | 4 inst/doc/transformations.html | 4 inst/doc/utilities.html | 4 inst/doc/vignette-topics.Rmd | 5 + inst/doc/vignette-topics.html | 12 ++ inst/doc/xplanations.html | 4 inst/doc/xtending.html | 8 - man/CLD.emmGrid.Rd | 2 man/emm_list-object.Rd | 71 +++++++++++---- man/joint_tests.Rd | 61 ++++++++++--- man/manip-factors.Rd | 9 +- man/mcmc-support.Rd | 8 + man/rbind.emmGrid.Rd | 28 +++--- man/ref_grid.Rd | 10 ++ man/summary.emmGrid.Rd | 46 +++++++++- vignettes/FAQs.Rmd | 2 vignettes/confidence-intervals.Rmd | 37 +++++++- vignettes/models.Rmd | 4 vignettes/vignette-topics.Rmd | 5 + 50 files changed, 818 insertions(+), 255 deletions(-)
Title: Taxonomic Name Resolution Service
Description: Provides access to the Taxonomic Name Resolution Service <https://github.com/ojalaquellueva/tnrsapi> through R. The user supplies plant taxonomic names and the package returns resolved taxonomic names along with information on decisions. Optionally, the package can also be used to parse taxonomic names.
Author: Brian Maitner [aut, cre] ,
Brad Boyle [aut],
Paul Efren [ctb]
Maintainer: Brian Maitner <bmaitner@gmail.com>
Diff between TNRS versions 0.3.0 dated 2022-02-22 and 0.3.1 dated 2022-06-22
DESCRIPTION | 8 +-- MD5 | 24 +++++------ NAMESPACE | 2 NEWS | 11 +++++ R/TNRS.R | 26 +++++++++--- R/TNRS_base.R | 7 +-- README.md | 7 +++ data/tnrs_testfile.rda |binary inst/doc/TNRS_vignette.html | 35 ++++++++-------- inst/doc/TNRS_vignette_spa.html | 35 ++++++++-------- man/TNRS.Rd | 2 man/TNRS_base.Rd | 86 ++++++++++++++++++++-------------------- man/TNRS_core.Rd | 80 ++++++++++++++++++------------------- 13 files changed, 182 insertions(+), 141 deletions(-)
Title: Analysis of RD Designs with Multiple Cutoffs or Scores
Description: The regression discontinuity (RD) design is a popular quasi-experimental design for causal inference and policy evaluation. The 'rdmulti' package provides tools to analyze RD designs with multiple cutoffs or scores: rdmc() estimates pooled and cutoff specific effects for multi-cutoff designs, rdmcplot() draws RD plots for multi-cutoff designs and rdms() estimates effects in cumulative cutoffs or multi-score designs. See Cattaneo, Titiunik and Vazquez-Bare (2020) <https://rdpackages.github.io/references/Cattaneo-Titiunik-VazquezBare_2020_Stata.pdf> for further methodological details.
Author: Matias D. Cattaneo, Rocio Titiunik, Gonzalo Vazquez-Bare
Maintainer: Gonzalo Vazquez-Bare <gvazquez@econ.ucsb.edu>
Diff between rdmulti versions 0.8 dated 2021-05-19 and 0.9 dated 2022-06-22
DESCRIPTION | 8 +- MD5 | 14 +-- R/rdmc.R | 205 ++++++++++++++++++++++++++++++++++++++-------------- R/rdmcplot.R | 4 - R/rdms.R | 131 +++++++++++++++++++++++++-------- R/rdmulti_package.R | 2 man/rdmc.Rd | 8 +- man/rdms.Rd | 6 + 8 files changed, 277 insertions(+), 101 deletions(-)
Title: Propensity Score Analysis Graphics
Description: A collection of functions that primarily produce graphics
to aid in a Propensity Score Analysis (PSA). Functions
include: cat.psa and box.psa to test balance within strata of
categorical and quantitative covariates, circ.psa for a
representation of the estimated effect size by stratum,
loess.psa that provides a graphic and loess based effect size
estimate, and various balance functions that provide measures
of the balance achieved via a PSA in a categorical covariate.
Author: James E. Helmreich <James.Helmreich@Marist.edu> and Robert M.
Pruzek <RMPruzek@yahoo.com>. We are grateful to KuangNan Xiong
for significant work on the functions new to version 2.0:
cstrata.psa, cv.bal.psa, and cv.trans.psa.
Maintainer: James E. Helmreich <James.Helmreich@Marist.edu>
Diff between PSAgraphics versions 2.1.1 dated 2012-03-18 and 2.1.1.1 dated 2022-06-22
DESCRIPTION | 7 ++++--- MD5 | 10 +++++----- NAMESPACE | 7 +++++++ data/lindner.rda |binary inst/CITATION | 4 ++-- man/cv.trans.psa.Rd | 2 -- 6 files changed, 18 insertions(+), 12 deletions(-)
Title: Julian Miscellaneous Function
Description: Some handy function in R.
Author: TszKin Julian Chan <ctszkin@gmail.com>
Maintainer: TszKin Julian Chan <ctszkin@gmail.com>
Diff between Jmisc versions 0.3.1 dated 2014-03-07 and 0.3.1.1 dated 2022-06-22
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NAMESPACE | 3 +++ man/label_both_parsed_recode.Rd | 2 +- 4 files changed, 12 insertions(+), 9 deletions(-)
Title: Semiparametric Regression Analysis of Interval-Censored Data
Description: Currently using the proportional hazards (PH) model. More methods under other semiparametric regression models will be included in later versions.
Author: Christopher S. McMahan and Lianming Wang
Maintainer: Lianming Wang <wangl@stat.sc.edu>
Diff between ICsurv versions 1.0 dated 2014-06-10 and 1.0.1 dated 2022-06-22
DESCRIPTION | 11 +++++------ MD5 | 6 +++--- NAMESPACE | 3 ++- data/Hemophilia.rda |binary 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Functions to Simulate Haplotypes
Description: Simulate haplotypes through meioses. Allows specification
of population parameters.
Author: Albart Coster [aut, cre],
John Bastiaansen [aut]
Maintainer: Albart Coster <albart@dairyconsult.nl>
Diff between HaploSim versions 1.8.4 dated 2010-06-21 and 1.8.4.1 dated 2022-06-22
DESCRIPTION | 20 +++++++++++++------- MD5 |only NAMESPACE | 1 + R/Classes.R | 2 +- inst/doc/HaploSim.pdf |binary 5 files changed, 15 insertions(+), 8 deletions(-)
Title: Grassmann Manifold Optimization
Description: Optimizing a function F(U), where U is a semi-orthogonal matrix and F is invariant under an orthogonal transformation of U.
Author: Kofi Placid Adragni and Seongho Wu
Maintainer: Kofi Placid Adragni <kofi@umbc.edu>
Diff between GrassmannOptim versions 2.0 dated 2013-12-02 and 2.0.1 dated 2022-06-22
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NAMESPACE | 3 +++ inst/CITATION | 4 ++-- 4 files changed, 13 insertions(+), 10 deletions(-)
More information about GrassmannOptim at CRAN
Permanent link
Title: Generalized Beta Distribution of the Second Kind: Properties,
Likelihood, Estimation
Description: Package GB2 explores the Generalized Beta distribution of the second kind. Density, cumulative distribution function, quantiles and moments of the distributions are given. Functions for the full log-likelihood, the profile log-likelihood and the scores are provided. Formulas for various indicators of inequality and poverty under the GB2 are implemented. The GB2 is fitted by the methods of maximum pseudo-likelihood estimation using the full and profile log-likelihood, and non-linear least squares estimation of the model parameters. Various plots for the visualization and analysis of the results are provided. Variance estimation of the parameters is provided for the method of maximum pseudo-likelihood estimation. A mixture distribution based on the compounding property of the GB2 is presented (denoted as "compound" in the documentation). This mixture distribution is based on the discretization of the distribution of the underlying random scale parameter. The discretization can be left or right tail. Density, cumulative distribution function, moments and quantiles for the mixture distribution are provided. The compound mixture distribution is fitted using the method of maximum pseudo-likelihood estimation. The fit can also incorporate the use of auxiliary information. In this new version of the package, the mixture case is complemented with new functions for variance estimation by linearization and comparative density plots.
Author: Monique Graf <monique.p.n.graf@bluewin.ch>, Desislava Nedyalkova <desislava.nedyalkova@gmail.com>.
Maintainer: Desislava Nedyalkova <desislava.nedyalkova@gmail.com>
Diff between GB2 versions 2.1 dated 2015-05-11 and 2.1.1 dated 2022-06-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NAMESPACE | 4 ++++ man/Indicators.Rd | 2 +- man/LogDensity.Rd | 2 +- 5 files changed, 13 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-06 1.2
2020-11-26 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-06-03 1.1
2011-03-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-14 0.1-29
2013-10-20 0.1-28
2013-09-25 0.1-27
2013-06-20 0.1-25
2012-09-14 0.1-22
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-16 1.3.2
2020-04-01 1.3.0
2019-12-10 1.2.0
2017-03-13 1.1.1
2016-03-26 1.1.0
2015-10-19 1.0.1
2015-06-09 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-07-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-09-16 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-16 0.4
2014-05-02 0.3
2013-11-26 0.2
2013-10-30 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-05 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-06-28 0.1.0
Title: Robust Kernel Unsupervised Methods
Description: Robust kernel center matrix, robust kernel cross-covariance operator for kernel unsupervised methods, kernel canonical correlation analysis,
influence function of identifying significant outliers or atypical objects from multimodal datasets. Alam, M. A, Fukumizu, K., Wang Y.-P. (2018) <doi:10.1016/j.neucom.2018.04.008>.
Alam, M. A, Calhoun, C. D., Wang Y.-P. (2018) <doi:10.1016/j.csda.2018.03.013>.
Author: Md Ashad Alam
Maintainer: Md Ashad Alam <malam@tulane.edu>
Diff between RKUM versions 0.1.1 dated 2019-03-04 and 0.1.1.1 dated 2022-06-22
DESCRIPTION | 7 +++---- MD5 | 6 +++--- man/hadr.Rd | 2 +- man/hulfun.Rd | 2 +- 4 files changed, 8 insertions(+), 9 deletions(-)