Title: Data & Functions for Working with US ZIP Codes
Description: Make working with ZIP codes in R painless with an integrated dataset of U.S. ZIP codes and functions for working with them.
Search ZIP codes by multiple geographies, including state, county, city & across time zones. Also included are functions for relating
ZIP codes to Census data, geocoding & distance calculations.
Author: Gavin Rozzi [aut, cre]
Maintainer: Gavin Rozzi <gr@gavinrozzi.com>
Diff between zipcodeR versions 0.3.3 dated 2021-09-22 and 0.3.4 dated 2022-06-24
DESCRIPTION | 8 +- MD5 | 14 ++--- NAMESPACE | 1 NEWS.md | 3 + R/zip_helper_functions.R | 46 ++++++---------- README.md | 78 ++++++++++++++-------------- build/vignette.rds |binary inst/doc/zipcodeR.html | 129 ++++++++++++++++++++++------------------------- 8 files changed, 133 insertions(+), 146 deletions(-)
Title: Sum of Single Effects Linear Regression
Description: Implements methods for variable selection in linear
regression based on the "Sum of Single Effects" (SuSiE) model, as
described in Wang et al (2020) <DOI:10.1101/501114> and Zou et al
(2021) <DOI:10.1101/2021.11.03.467167>. These methods provide
simple summaries, called "Credible Sets", for accurately
quantifying uncertainty in which variables should be selected.
The methods are motivated by genetic fine-mapping applications,
and are particularly well-suited to settings where variables are
highly correlated and detectable effects are sparse. The fitting
algorithm, a Bayesian analogue of stepwise selection methods
called "Iterative Bayesian Stepwise Selection" (IBSS), is simple
and fast, allowing the SuSiE model be fit to large data sets
(thousands of samples and hundreds of thousands of variables).
Author: Gao Wang [aut],
Yuxin Zou [aut],
Kaiqian Zhang [aut],
Peter Carbonetto [aut, cre],
Matthew Stephens [aut]
Maintainer: Peter Carbonetto <peter.carbonetto@gmail.com>
Diff between susieR versions 0.11.92 dated 2021-11-12 and 0.12.12 dated 2022-06-24
DESCRIPTION | 12 LICENSE | 5 MD5 | 91 ++--- NAMESPACE | 3 R/compute_ss.R | 5 R/set_R_attributes.R | 2 R/susie.R | 33 - R/susie_plots.R | 17 R/susie_rss.R | 272 ++++++++++----- R/susie_rss_lambda.R | 8 R/susie_ss.R | 119 +----- R/susie_trendfilter.R | 2 R/susie_utils.R | 142 +++++-- build/partial.rdb |binary build/vignette.rds |binary data/N2finemapping.RData |binary data/N3finemapping.RData |binary inst/doc/finemapping.html | 480 +++++++++++++++------------ inst/doc/finemapping_summary_statistics.R | 46 ++ inst/doc/finemapping_summary_statistics.Rmd | 177 ++++++++- inst/doc/finemapping_summary_statistics.html | 326 +++++++++++++----- inst/doc/l0_initialization.html | 165 +++++---- inst/doc/mwe.html | 159 +++++--- inst/doc/sparse_susie_eval.html | 118 ++++-- inst/doc/susie_refine.html | 218 +++++++----- inst/doc/susie_rss.R |only inst/doc/susie_rss.Rmd |only inst/doc/susie_rss.html |only inst/doc/susierss_diagnostic.R | 22 - inst/doc/susierss_diagnostic.Rmd | 30 - inst/doc/susierss_diagnostic.html | 277 +++++++++------ inst/doc/susierss_diagnostic2.R |only inst/doc/trend_filtering.html | 225 ++++++++---- inst/doc/trendfiltering_derivations.pdf |binary man/estimate_s_rss.Rd | 13 man/kriging_rss.Rd | 9 man/susie.Rd | 38 -- man/susie_plots.Rd | 5 man/susie_rss.Rd | 165 +++++---- tests/testthat/helper_testthat.R | 2 tests/testthat/test_get_samples.R | 4 tests/testthat/test_init.R | 2 tests/testthat/test_null_weight.R | 4 tests/testthat/test_prior_weights.R | 13 tests/testthat/test_susie_beta_se.R | 132 ++++--- tests/testthat/test_susie_trendfilter.R | 2 vignettes/finemapping_summary_statistics.Rmd | 177 ++++++++- vignettes/susie_rss.Rmd |only vignettes/susierss_diagnostic.Rmd | 30 - 49 files changed, 2231 insertions(+), 1319 deletions(-)
Title: Template Engine Inspired by 'Jinja'
Description: Template engine powered by the 'inja' C++ library. Users
write a template document, using syntax inspired by the 'Jinja' Python
package, and then render the final document by passing data from R.
The template syntax supports features such as variables, loops,
conditions and inheritance.
Author: David Hall [aut, cre, cph] ,
Lars Berscheid [cph] ,
Niels Lohmann [cph]
Maintainer: David Hall <david.hall.physics@gmail.com>
Diff between jinjar versions 0.1.1 dated 2022-05-01 and 0.2.0 dated 2022-06-24
jinjar-0.1.1/jinjar/inst/WORDLIST |only jinjar-0.1.1/jinjar/src/config.cpp |only jinjar-0.1.1/jinjar/src/config.h |only jinjar-0.1.1/jinjar/tests/spelling.R |only jinjar-0.2.0/jinjar/DESCRIPTION | 12 - jinjar-0.2.0/jinjar/MD5 | 44 +++--- jinjar-0.2.0/jinjar/NAMESPACE | 5 jinjar-0.2.0/jinjar/NEWS.md | 5 jinjar-0.2.0/jinjar/R/check.R |only jinjar-0.2.0/jinjar/R/config.R | 34 ++--- jinjar-0.2.0/jinjar/R/cpp11.R | 8 - jinjar-0.2.0/jinjar/R/loader.R | 9 - jinjar-0.2.0/jinjar/R/parse.R |only jinjar-0.2.0/jinjar/R/render.R | 31 +--- jinjar-0.2.0/jinjar/inst/doc/template-syntax.Rmd | 47 +++++-- jinjar-0.2.0/jinjar/inst/doc/template-syntax.html | 130 +++++++++++--------- jinjar-0.2.0/jinjar/man/loader.Rd | 2 jinjar-0.2.0/jinjar/man/parse.Rd |only jinjar-0.2.0/jinjar/man/render.Rd | 11 + jinjar-0.2.0/jinjar/src/cpp11.cpp | 18 ++ jinjar-0.2.0/jinjar/src/jinjar_types.h |only jinjar-0.2.0/jinjar/src/render.cpp | 43 ++---- jinjar-0.2.0/jinjar/src/template.cpp |only jinjar-0.2.0/jinjar/src/template.h |only jinjar-0.2.0/jinjar/tests/testthat/_snaps/config.md | 2 jinjar-0.2.0/jinjar/tests/testthat/_snaps/render.md | 7 + jinjar-0.2.0/jinjar/tests/testthat/test-render.R | 43 ++++++ jinjar-0.2.0/jinjar/vignettes/template-syntax.Rmd | 47 +++++-- 28 files changed, 304 insertions(+), 194 deletions(-)
Title: Write 'YAML' for 'R Markdown', 'bookdown', 'blogdown', and More
Description: Write 'YAML' front matter for R Markdown and related
documents. Work with 'YAML' objects more naturally and write the
resulting 'YAML' to your clipboard or to 'YAML' files related to your
project.
Author: Malcolm Barrett [aut, cre] ,
Richard Iannone [aut] ,
RStudio [cph, fnd]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between ymlthis versions 0.1.5 dated 2021-09-15 and 0.1.6 dated 2022-06-24
DESCRIPTION | 40 - MD5 | 71 +-- NEWS.md | 4 R/addins.R | 1 R/markdownr.R | 10 R/use_yml.R | 11 R/utils.R | 12 R/yml.R | 10 R/yml_citations.R | 2 R/yml_helpers.R | 8 R/yml_params.R | 28 - R/yml_top.R | 17 README.md | 4 build/vignette.rds |binary inst/doc/introduction-to-ymlthis.R | 2 inst/doc/introduction-to-ymlthis.Rmd | 2 inst/doc/introduction-to-ymlthis.html | 254 ++++++++++-- inst/doc/yaml-fieldguide.R | 2 inst/doc/yaml-fieldguide.Rmd | 2 inst/doc/yaml-fieldguide.html | 609 ++++++++++++++++++++++-------- inst/doc/yaml-overview.R | 2 inst/doc/yaml-overview.Rmd | 2 inst/doc/yaml-overview.html | 131 +++++- man/use_yml.Rd | 8 man/yml_citations.Rd | 2 man/yml_params.Rd | 17 tests/testthat/_snaps |only tests/testthat/helper-utils.R | 1 tests/testthat/test-basic_yaml_results.R | 17 tests/testthat/test-blogdown_yaml.R | 1 tests/testthat/test-bookdown_yaml.R | 1 tests/testthat/test-helpers_work.R | 1 tests/testthat/test-markdownr.R |only tests/testthat/test-rmarkdown_functions.R | 3 vignettes/introduction-to-ymlthis.Rmd | 2 vignettes/yaml-fieldguide.Rmd | 2 vignettes/yaml-overview.Rmd | 2 37 files changed, 936 insertions(+), 345 deletions(-)
Title: R Utilities for GFF Files
Description: R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.
Author: Juan Antonio Garcia-Martin [cre, aut]
,
Juan Carlos Oliveros [aut, ctb]
,
Rafael Torres-Perez [aut, ctb]
Maintainer: Juan Antonio Garcia-Martin <ja.garcia@cnb.csic.es>
Diff between Rgff versions 0.1.0 dated 2022-06-23 and 0.1.1 dated 2022-06-24
DESCRIPTION | 8 MD5 | 39 ++-- NEWS.md |only R/Rgff.R | 58 +++--- inst/doc/Using_Rgff.R | 37 +--- inst/doc/Using_Rgff.Rmd | 77 +++----- inst/doc/Using_Rgff.html | 135 +++++++------- inst/extdata/AthSmall.gff3.gene-exon.ncRNA_gene-exon.saf |only inst/extdata/AthSmall.gff3.gene-exon.saf |only inst/extdata/AthSmall.gff3.gene.saf |only inst/extdata/AthSmall.gff3.pairs |only inst/extdata/AthSmall.gff3.paths |only inst/extdata/AthSmall.gtf | 138 +++++++-------- inst/extdata/AthSmall.gtf.pairs |only inst/extdata/eden.gff3.pairs |only inst/extdata/eden.sorted.gff3 |only man/check_gff.Rd | 6 man/get_features.Rd | 4 man/get_pairs_from_gff.Rd | 6 man/gff_stats.Rd | 6 man/gff_stats_by_chr.Rd | 6 man/plot_features.Rd | 6 man/saf_from_gff.Rd | 2 man/sort_gff.Rd | 4 vignettes/Using_Rgff.Rmd | 77 +++----- 25 files changed, 304 insertions(+), 305 deletions(-)
Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Complete analytical environment for the construction and analysis
of matrix population models and integral projection models.
Includes the ability to construct historical matrices, which are
2d matrices comprising 3 consecutive times of demographic
information. Estimates both raw and function-based forms of
historical and standard ahistorical matrices. It also estimates
function-based age-by-stage matrices and raw and function-based
Leslie matrices.
Author: Richard P. Shefferson [aut, cre]
,
Johan Ehrlen [aut]
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>
Diff between lefko3 versions 5.2.0 dated 2022-05-18 and 5.3.0 dated 2022-06-24
DESCRIPTION | 8 MD5 | 144 - NAMESPACE | 2 NEWS | 30 R/RcppExports.R | 394 ++- R/errorchecks.R | 20 R/matrixcreation.R | 1120 +++++---- R/modelselection.R | 678 +++++ R/popchar.R | 1677 +++++++++++++- R/popdyn.R | 72 inst/doc/Chapter1.Rmd | 10 inst/doc/Chapter1.html | 53 inst/doc/Chapter2.Rmd | 3 inst/doc/Chapter2.html | 16 inst/doc/Chapter5.Rmd | 92 inst/doc/Chapter5.html | 153 - inst/doc/Chapter6.Rmd | 130 - inst/doc/Chapter6.html | 174 + inst/doc/Chapter8.Rmd | 131 - inst/doc/Chapter8.html | 167 + inst/doc/Chapter9.Rmd | 7 inst/doc/Chapter9.html | 612 ++--- man/actualstage3.Rd | 36 man/aflefko2.Rd | 30 man/create_pm.Rd | 9 man/elasticity3.Rd | 1 man/elasticity3.lefkoMat.Rd | 1 man/elasticity3.list.Rd | 1 man/elasticity3.matrix.Rd | 1 man/f_projection3.Rd | 12 man/flefko2.Rd | 30 man/flefko3.Rd | 30 man/fleslie.Rd | 32 man/hfv_qc.Rd |only man/image3.Rd | 2 man/lambda3.Rd | 1 man/lambda3.lefkoMat.Rd | 1 man/lambda3.matrix.Rd | 1 man/lmean.Rd | 1 man/ltre3.Rd | 1 man/ltre3.lefkoMat.Rd | 1 man/modelsearch.Rd | 5 man/repvalue3.Rd | 1 man/repvalue3.lefkoMat.Rd | 1 man/repvalue3.matrix.Rd | 1 man/sensitivity3.Rd | 1 man/sensitivity3.lefkoMat.Rd | 1 man/sensitivity3.list.Rd | 1 man/sensitivity3.matrix.Rd | 1 man/sf_create.Rd | 10 man/sf_distrib.Rd | 2 man/stablestage3.Rd | 1 man/stablestage3.lefkoMat.Rd | 1 man/stablestage3.matrix.Rd | 1 man/supplemental.Rd | 1 man/vrm_import.Rd |only src/DataManagement.cpp | 10 src/ErrorChecks.cpp | 8 src/ExtraFunctions.cpp | 65 src/ModelSelection.cpp | 66 src/RcppExports.cpp | 71 src/matsndyn.cpp | 5118 +++++++++++++++++++++++++++++++++---------- vignettes/Chapter1.Rmd | 10 vignettes/Chapter2.Rmd | 3 vignettes/Chapter2.Rmd.orig | 3 vignettes/Chapter5.Rmd | 92 vignettes/Chapter5.Rmd.orig | 12 vignettes/Chapter6.Rmd | 130 - vignettes/Chapter6.Rmd.orig | 16 vignettes/Chapter8.Rmd | 131 - vignettes/Chapter8.Rmd.orig | 17 vignettes/Chapter9.Rmd | 7 vignettes/Chapter9.Rmd.orig | 7 vignettes/Lefko3Tutorial.bib | 12 74 files changed, 9023 insertions(+), 2667 deletions(-)
Title: Hotelling T-Square and Confidence Ellipse
Description: Functions to compute the semi-axes lengths and coordinate points of Hotelling ellipse. Bro and Smilde (2014) <DOI:10.1039/c3ay41907j>. Brereton (2016) <DOI:10.1002/cem.2763>.
Author: Christian L. Goueguel [aut, cre]
Maintainer: Christian L. Goueguel <christian.goueguel@gmail.com>
Diff between HotellingEllipse versions 0.1.1 dated 2021-05-18 and 1.1.0 dated 2022-06-24
DESCRIPTION | 12 MD5 | 47 +-- NAMESPACE | 19 + NEWS.md | 33 ++ R/HotellingEllipse-package.R |only R/data.R | 11 R/ellipseCoord.R | 22 - R/ellipseParam.R | 29 - README.md | 158 ++++++---- build/partial.rdb |binary build/vignette.rds |binary data/specData.rda |binary inst/WORDLIST | 9 inst/doc/HotellingEllipse.Rmd | 11 inst/doc/HotellingEllipse.html | 448 +++++++++++++++++------------- inst/pkgdown.yml | 8 man/HotellingEllipse-package.Rd |only man/ellipseCoord.Rd | 14 man/ellipseParam.Rd | 20 - man/figures/README-unnamed-chunk-14-1.png |binary man/figures/README-unnamed-chunk-15-1.png |binary man/figures/README-unnamed-chunk-16-1.png |only man/figures/README-unnamed-chunk-18-1.png |only man/figures/README-unnamed-chunk-19-1.png |only man/specData.Rd | 8 tests/testthat/test-test_fun.R | 6 vignettes/HotellingEllipse.Rmd | 11 27 files changed, 513 insertions(+), 353 deletions(-)
More information about HotellingEllipse at CRAN
Permanent link
Title: Identify Global Objects in R Expressions
Description: Identifies global ("unknown" or "free") objects in R expressions
by code inspection using various strategies (ordered, liberal, or
conservative). The objective of this package is to make it as simple as
possible to identify global objects for the purpose of exporting them in
parallel, distributed compute environments.
Author: Henrik Bengtsson [aut, cre, cph],
Davis Vaughan [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between globals versions 0.15.0 dated 2022-05-09 and 0.15.1 dated 2022-06-24
globals-0.15.0/globals/NEWS |only globals-0.15.1/globals/DESCRIPTION | 8 ++++---- globals-0.15.1/globals/MD5 | 9 +++++---- globals-0.15.1/globals/NEWS.md |only globals-0.15.1/globals/R/utils,conditions.R |only globals-0.15.1/globals/R/utils.R | 14 ++++---------- globals-0.15.1/globals/tests/utils.R | 7 +++++++ 7 files changed, 20 insertions(+), 18 deletions(-)
Title: Mixed Computerized Adaptive Multistage Testing
Description: Provides functions to more easily analyze computerized adaptive tests. Currently, functions for computerized
adaptive tests (CAT), computer adaptive multistage tests (CMT), and mixed computer adaptive multistage tests (McaMST)
utilizing CAT item-level adaptation for the initial stage and traditional MST module-level adaptation for the subsequent
stages have been created, and a variation of Hybrid computer adaptive MST is planned as well. For an in-depth look at
CAT and MST, see Weiss & Kingsbury (1984) <doi:10.1111/j.1745-3984.1984.tb01040.x> and Luecht & Nungester
(2000) <doi:10.1007/0-306-47531-6_6> respectively.
Author: Anthony Raborn [aut, cre]
Maintainer: Anthony Raborn <anthony.w.raborn@gmail.com>
Diff between caMST versions 0.1.4 dated 2021-05-18 and 0.1.6 dated 2022-06-24
DESCRIPTION | 10 MD5 | 70 NAMESPACE | 26 NEWS.md | 4 R/all_class_generics.R | 344 ++-- R/caMST.R | 114 - R/computerized_adaptive_test_function.R | 388 ++-- R/data.R | 176 +- R/iterative_maximum_likelihood_theta_estimation.R | 74 R/mixed_adaptive_test_function.R | 317 +-- R/module_selection_function.R | 260 +-- R/mst_and_transition_matrices_for_caMST.R | 838 +++++----- R/multistage_test_function.R | 616 +++---- R/routing_item_selection.R | 48 R/transition_matrix_plot.R | 160 - man/MAT-class.Rd | 76 man/caMST.Rd | 24 man/caMSTStartup.Rd | 34 man/cat_items.Rd | 52 man/computerized_adaptive_test.Rd | 144 - man/dot-onAttach.Rd | 46 man/example_module_items.Rd | 38 man/example_responses.Rd | 38 man/example_thetas.Rd | 32 man/example_transition_matrix.Rd | 38 man/mixed_adaptive_test.Rd | 217 +- man/mst_items.Rd | 52 man/mst_only_items.Rd | 50 man/mst_only_matrix.Rd | 38 man/multistage_test.Rd | 218 +- man/transition_matrix_plot.Rd | 82 tests/testthat.R | 8 tests/testthat/computerized_adaptive_test_expected_results1.rds |binary tests/testthat/multistage_test_expected_results1.rds |binary tests/testthat/multistage_test_expected_results2.rds |binary tests/testthat/test_theta_estimates.R | 40 36 files changed, 2357 insertions(+), 2315 deletions(-)
Title: Working with Rotation Data
Description: Tools for working with rotational data, including
simulation from the most commonly used distributions on SO(3),
methods for different Bayes, mean and median type estimators for
the central orientation of a sample, confidence/credible
regions for the central orientation based on those estimators and
a novel visualization technique for rotation data. Most recently,
functions to identify potentially discordant (outlying) values
have been added. References: Bingham, Melissa A. and Nordman, Dan J. and Vardeman, Steve B. (2009),
Bingham, Melissa A and Vardeman, Stephen B and Nordman, Daniel J (2009),
Bingham, Melissa A and Nordman, Daniel J and Vardeman, Stephen B (2010),
Leon, C.A. and Masse, J.C. and Rivest, L.P. (2006),
Hartley, R and Aftab, K and Trumpf, J. (2011),
Stanfill, Bryan and Genschel, Ulrike and Hofmann, Heike (2013),
Maonton, Jonathan (2004),
Mardia, KV and Jupp, PE (2000, ISBN:9780471953333),
Rancourt, D. and Rivest, L.P. and Asselin, J. (2000),
Chang, Ted and Rivest, Louis-Paul (2001),
Fisher, Nicholas I. (1996, ISBN:0521568900).
Author: Bryan Stanfill [aut, cre],
Heike Hofmann [aut],
Ulrike Genschel [aut],
Aymeric Stamm [ctb] ,
Luciano Selzer [ctb]
Maintainer: Bryan Stanfill <bstanfill2003@gmail.com>
Diff between rotations versions 1.6.3 dated 2021-11-25 and 1.6.4 dated 2022-06-24
DESCRIPTION | 24 ++--- MD5 | 18 ++-- NEWS | 9 ++ R/distributions.R | 6 - R/estimators.R | 8 - R/plot.R | 174 ++++++++----------------------------------- R/preliminary.R | 4 README.md | 5 - inst/doc/rotations-intro.pdf |binary man/plot.Rd | 12 +- 10 files changed, 81 insertions(+), 179 deletions(-)
Title: Creating Demographic Table
Description: Functions for creating demographic table with simple
summary statistics, with optional comparison(s) over one or
more groups. Numeric variables are summarized in means,
standard deviations, medians, inter-quartile-ranges (IQR),
skewness, Shapiro-Wilk normality test and ranges, and compared
using two-sample t-test, Wilcoxon test, ANOVA and/or
Kruskal-Wallis test. Logical and factor variables are
summarized in counts and percentages and compared using
chi-squared test and/or Fisher's exact test.
Author: Tingting Zhan [aut, cre, cph]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between DemographicTable versions 0.1.4 dated 2022-06-13 and 0.1.5 dated 2022-06-24
DESCRIPTION | 35 +++++++++++++---------------- MD5 | 11 +++++---- NAMESPACE | 2 + NEWS.md | 2 + R/DemographicTable.R | 49 +++++++++++++++++++++++++++++++++++++++-- R/DemographicTable_info.R | 1 man/xtable.DemographicTable.Rd |only 7 files changed, 74 insertions(+), 26 deletions(-)
More information about DemographicTable at CRAN
Permanent link
Title: General Resampling Infrastructure
Description: Classes and functions to create and summarize different types
of resampling objects (e.g. bootstrap, cross-validation).
Author: Julia Silge [aut, cre] ,
Fanny Chow [aut],
Max Kuhn [aut],
Hadley Wickham [aut],
RStudio [cph, fnd]
Maintainer: Julia Silge <julia.silge@rstudio.com>
Diff between rsample versions 0.1.1 dated 2021-11-08 and 1.0.0 dated 2022-06-24
rsample-0.1.1/rsample/R/0_imports.R |only rsample-0.1.1/rsample/R/compat-dplyr-old.R |only rsample-0.1.1/rsample/R/data.R |only rsample-0.1.1/rsample/R/gather.R |only rsample-0.1.1/rsample/R/pkg.R |only rsample-0.1.1/rsample/man/attrition.Rd |only rsample-0.1.1/rsample/man/drinks.Rd |only rsample-0.1.1/rsample/man/gather.rset.Rd |only rsample-0.1.1/rsample/man/pretty.vfold_cv.Rd |only rsample-0.1.1/rsample/man/rsample.Rd |only rsample-0.1.1/rsample/man/two_class_dat.Rd |only rsample-0.1.1/rsample/tests/testthat/helper-s3.R |only rsample-0.1.1/rsample/tests/testthat/print_test_output |only rsample-0.1.1/rsample/tests/testthat/test-compat-dplyr-old.R |only rsample-0.1.1/rsample/tests/testthat/test-print-groups.txt |only rsample-0.1.1/rsample/tests/testthat/test_boot.R |only rsample-0.1.1/rsample/tests/testthat/test_bootci.R |only rsample-0.1.1/rsample/tests/testthat/test_caret.R |only rsample-0.1.1/rsample/tests/testthat/test_fingerprint.R |only rsample-0.1.1/rsample/tests/testthat/test_for_pred.R |only rsample-0.1.1/rsample/tests/testthat/test_group.R |only rsample-0.1.1/rsample/tests/testthat/test_initial.R |only rsample-0.1.1/rsample/tests/testthat/test_labels.R |only rsample-0.1.1/rsample/tests/testthat/test_loo.R |only rsample-0.1.1/rsample/tests/testthat/test_mc.R |only rsample-0.1.1/rsample/tests/testthat/test_names.R |only rsample-0.1.1/rsample/tests/testthat/test_nesting.R |only rsample-0.1.1/rsample/tests/testthat/test_permutations.R |only rsample-0.1.1/rsample/tests/testthat/test_rolling.R |only rsample-0.1.1/rsample/tests/testthat/test_rset.R |only rsample-0.1.1/rsample/tests/testthat/test_rsplit.R |only rsample-0.1.1/rsample/tests/testthat/test_strata.R |only rsample-0.1.1/rsample/tests/testthat/test_tidy.R |only rsample-0.1.1/rsample/tests/testthat/test_validation.R |only rsample-0.1.1/rsample/tests/testthat/test_vfold.R |only rsample-0.1.1/rsample/vignettes/Applications/Survival_Analysis.Rmd |only rsample-1.0.0/rsample/DESCRIPTION | 25 rsample-1.0.0/rsample/MD5 | 185 ++--- rsample-1.0.0/rsample/NAMESPACE | 23 rsample-1.0.0/rsample/NEWS.md | 18 rsample-1.0.0/rsample/R/apparent.R | 19 rsample-1.0.0/rsample/R/boot.R | 152 ++-- rsample-1.0.0/rsample/R/bootci.R | 107 +-- rsample-1.0.0/rsample/R/caret.R | 136 ++- rsample-1.0.0/rsample/R/compat-vctrs-helpers.R | 2 rsample-1.0.0/rsample/R/complement.R | 12 rsample-1.0.0/rsample/R/form_pred.R | 6 rsample-1.0.0/rsample/R/groups.R | 100 +- rsample-1.0.0/rsample/R/initial_split.R | 44 - rsample-1.0.0/rsample/R/labels.R | 212 ------ rsample-1.0.0/rsample/R/loo.R | 22 rsample-1.0.0/rsample/R/make_groups.R |only rsample-1.0.0/rsample/R/make_strata.R | 48 - rsample-1.0.0/rsample/R/manual.R | 9 rsample-1.0.0/rsample/R/mc.R | 119 +-- rsample-1.0.0/rsample/R/misc.R | 7 rsample-1.0.0/rsample/R/nest.R | 51 - rsample-1.0.0/rsample/R/permutations.R | 30 rsample-1.0.0/rsample/R/printing.R |only rsample-1.0.0/rsample/R/reg_intervals.R | 21 rsample-1.0.0/rsample/R/rolling_origin.R | 60 - rsample-1.0.0/rsample/R/rsample-package.R |only rsample-1.0.0/rsample/R/rset.R | 7 rsample-1.0.0/rsample/R/rsplit.R | 136 ++- rsample-1.0.0/rsample/R/slide.R | 21 rsample-1.0.0/rsample/R/tidy.R | 57 + rsample-1.0.0/rsample/R/validation_split.R | 83 -- rsample-1.0.0/rsample/R/vfold.R | 98 +- rsample-1.0.0/rsample/R/zzz.R | 11 rsample-1.0.0/rsample/build/vignette.rds |binary rsample-1.0.0/rsample/inst/doc/Working_with_rsets.Rmd | 14 rsample-1.0.0/rsample/inst/doc/Working_with_rsets.html | 336 ++++++++- rsample-1.0.0/rsample/inst/doc/rsample.html | 295 ++++++++ rsample-1.0.0/rsample/man/bootstraps.Rd | 36 - rsample-1.0.0/rsample/man/form_pred.Rd | 2 rsample-1.0.0/rsample/man/group_vfold_cv.Rd | 28 rsample-1.0.0/rsample/man/initial_split.Rd | 8 rsample-1.0.0/rsample/man/int_pctl.Rd | 6 rsample-1.0.0/rsample/man/make_groups.Rd |only rsample-1.0.0/rsample/man/make_strata.Rd | 2 rsample-1.0.0/rsample/man/manual_rset.Rd | 2 rsample-1.0.0/rsample/man/mc_cv.Rd | 36 - rsample-1.0.0/rsample/man/nested_cv.Rd | 7 rsample-1.0.0/rsample/man/permutations.Rd | 1 rsample-1.0.0/rsample/man/reg_intervals.Rd | 4 rsample-1.0.0/rsample/man/rolling_origin.Rd | 3 rsample-1.0.0/rsample/man/rsample-package.Rd |only rsample-1.0.0/rsample/man/rset_reconstruct.Rd | 2 rsample-1.0.0/rsample/man/tidy.rsplit.Rd | 22 rsample-1.0.0/rsample/man/vfold_cv.Rd | 38 - rsample-1.0.0/rsample/tests/testthat/_snaps |only rsample-1.0.0/rsample/tests/testthat/helpers-rsample.R |only rsample-1.0.0/rsample/tests/testthat/test-boot.R |only rsample-1.0.0/rsample/tests/testthat/test-bootci.R |only rsample-1.0.0/rsample/tests/testthat/test-caret.R |only rsample-1.0.0/rsample/tests/testthat/test-compat-dplyr.R | 140 +++- rsample-1.0.0/rsample/tests/testthat/test-compat-vctrs.R | 10 rsample-1.0.0/rsample/tests/testthat/test-fingerprint.R |only rsample-1.0.0/rsample/tests/testthat/test-for-pred.R |only rsample-1.0.0/rsample/tests/testthat/test-groups.R |only rsample-1.0.0/rsample/tests/testthat/test-initial.R |only rsample-1.0.0/rsample/tests/testthat/test-labels.R |only rsample-1.0.0/rsample/tests/testthat/test-loo.R |only rsample-1.0.0/rsample/tests/testthat/test-make-splits.R | 2 rsample-1.0.0/rsample/tests/testthat/test-mc.R |only rsample-1.0.0/rsample/tests/testthat/test-names.R |only rsample-1.0.0/rsample/tests/testthat/test-nesting.R |only rsample-1.0.0/rsample/tests/testthat/test-permutations.R |only rsample-1.0.0/rsample/tests/testthat/test-rolling.R |only rsample-1.0.0/rsample/tests/testthat/test-rset.R | 346 +--------- rsample-1.0.0/rsample/tests/testthat/test-rsplit.R |only rsample-1.0.0/rsample/tests/testthat/test-strata.R |only rsample-1.0.0/rsample/tests/testthat/test-tidy.R |only rsample-1.0.0/rsample/tests/testthat/test-validation.R |only rsample-1.0.0/rsample/tests/testthat/test-vfold.R |only rsample-1.0.0/rsample/vignettes/Applications/Intervals.Rmd | 4 rsample-1.0.0/rsample/vignettes/Working_with_rsets.Rmd | 14 117 files changed, 1733 insertions(+), 1446 deletions(-)
Title: Functions for Generating PostgreSQL Statements/Scripts
Description: Create PostgreSQL statements/scripts from R, optionally executing the SQL statements.
Common SQL operations are included, although not every configurable option is available at this time.
SQL output is intended to be compliant with PostgreSQL syntax specifications. PostgreSQL documentation is available here
<https://www.postgresql.org/docs/current/index.html>.
Author: Timothy Conwell
Maintainer: Timothy Conwell <timconwell@gmail.com>
Diff between pgTools versions 0.1.0 dated 2021-01-25 and 1.0.0 dated 2022-06-24
pgTools-0.1.0/pgTools/R/pgTools2.R |only pgTools-0.1.0/pgTools/man/doubleQuoteText.Rd |only pgTools-0.1.0/pgTools/man/quoteText.Rd |only pgTools-0.1.0/pgTools/man/sampleStr.Rd |only pgTools-0.1.0/pgTools/man/sql_script.Rd |only pgTools-1.0.0/pgTools/DESCRIPTION | 12 +-- pgTools-1.0.0/pgTools/MD5 | 78 ++++++++++++---------- pgTools-1.0.0/pgTools/NAMESPACE | 5 + pgTools-1.0.0/pgTools/R/pgTools.R |only pgTools-1.0.0/pgTools/R/sysdata.rda |only pgTools-1.0.0/pgTools/man/COPY.Rd |only pgTools-1.0.0/pgTools/man/DELETE.Rd | 8 +- pgTools-1.0.0/pgTools/man/INSERT.Rd | 48 ++++++++++--- pgTools-1.0.0/pgTools/man/TRUNCATE.Rd | 8 +- pgTools-1.0.0/pgTools/man/UPDATE.Rd | 14 +-- pgTools-1.0.0/pgTools/man/alterDATABASE.Rd | 22 +++--- pgTools-1.0.0/pgTools/man/alterSCHEMA.Rd | 14 +-- pgTools-1.0.0/pgTools/man/alterTABLE.Rd | 20 ++--- pgTools-1.0.0/pgTools/man/arrayStrToVec.Rd |only pgTools-1.0.0/pgTools/man/callFUNCTION.Rd | 8 +- pgTools-1.0.0/pgTools/man/callPROCEDURE.Rd | 8 +- pgTools-1.0.0/pgTools/man/connect.Rd |only pgTools-1.0.0/pgTools/man/createDATABASE.Rd | 30 ++++---- pgTools-1.0.0/pgTools/man/createEXTENSION.Rd | 18 ++--- pgTools-1.0.0/pgTools/man/createFUNCTION.Rd | 18 ++--- pgTools-1.0.0/pgTools/man/createPROCEDURE.Rd | 16 ++-- pgTools-1.0.0/pgTools/man/createSCHEMA.Rd | 14 +-- pgTools-1.0.0/pgTools/man/createTABLE.Rd | 20 +++-- pgTools-1.0.0/pgTools/man/createTRIGGER.Rd | 20 ++--- pgTools-1.0.0/pgTools/man/create_sql_script.Rd |only pgTools-1.0.0/pgTools/man/dropDATABASE.Rd | 14 +-- pgTools-1.0.0/pgTools/man/dropEXTENSION.Rd | 16 ++-- pgTools-1.0.0/pgTools/man/dropFUNCTION.Rd | 16 ++-- pgTools-1.0.0/pgTools/man/dropPROCEDURE.Rd | 16 ++-- pgTools-1.0.0/pgTools/man/dropSCHEMA.Rd | 16 ++-- pgTools-1.0.0/pgTools/man/dropTABLE.Rd | 16 ++-- pgTools-1.0.0/pgTools/man/dropTRIGGER.Rd | 18 ++--- pgTools-1.0.0/pgTools/man/insert_batch_chunker.Rd |only pgTools-1.0.0/pgTools/man/insert_table_chunker.Rd |only pgTools-1.0.0/pgTools/man/pg_addColumn.Rd |only pgTools-1.0.0/pgTools/man/pg_alterColumnType.Rd |only pgTools-1.0.0/pgTools/man/pg_data_types.Rd |only pgTools-1.0.0/pgTools/man/pg_dropColumn.Rd |only pgTools-1.0.0/pgTools/man/pg_renameColumn.Rd |only pgTools-1.0.0/pgTools/man/pg_renameTable.Rd |only pgTools-1.0.0/pgTools/man/querySELECT.Rd |only pgTools-1.0.0/pgTools/man/quoteText2.Rd |only pgTools-1.0.0/pgTools/man/sqlNameWalk.Rd |only pgTools-1.0.0/pgTools/man/sqlTypeWalk.Rd |only pgTools-1.0.0/pgTools/man/sql_80_char_comment.Rd | 2 pgTools-1.0.0/pgTools/man/sql_comment.Rd | 2 pgTools-1.0.0/pgTools/man/vecToArrayStr.Rd |only 52 files changed, 272 insertions(+), 225 deletions(-)
Title: Ordinary Kriging
Description: An implementation of a simple and highly optimized ordinary kriging algorithm to plot geographical data.
Author: Omar E. Olmedo
Maintainer: Omar E. Olmedo <omareolmedo@gmail.com>
Diff between kriging versions 1.1 dated 2014-12-01 and 1.2 dated 2022-06-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 3 +++ 3 files changed, 9 insertions(+), 6 deletions(-)
Title: Extended Mixed Models Using Latent Classes and Latent Processes
Description: Estimation of various extensions of the mixed models including latent class mixed models, joint latent latent class mixed models, mixed models for curvilinear outcomes, mixed models for multivariate longitudinal outcomes using a maximum likelihood estimation method (Proust-Lima, Philipps, Liquet (2017) <doi:10.18637/jss.v078.i02>).
Author: Cecile Proust-Lima, Viviane Philipps, Amadou Diakite and Benoit Liquet
Maintainer: Cecile Proust-Lima <cecile.proust-lima@inserm.fr>
Diff between lcmm versions 1.9.5 dated 2022-01-31 and 2.0.0 dated 2022-06-24
lcmm-1.9.5/lcmm/inst/doc/dynamicIRT_with_multlcmm.R |only lcmm-1.9.5/lcmm/inst/doc/dynamicIRT_with_multlcmm.Rmd |only lcmm-1.9.5/lcmm/inst/doc/dynamicIRT_with_multlcmm.html |only lcmm-1.9.5/lcmm/src/AOptim.f90 |only lcmm-1.9.5/lcmm/vignettes/dynamicIRT_with_multlcmm.Rmd |only lcmm-2.0.0/lcmm/DESCRIPTION | 12 lcmm-2.0.0/lcmm/MD5 | 157 lcmm-2.0.0/lcmm/NAMESPACE | 6 lcmm-2.0.0/lcmm/NEWS | 16 lcmm-2.0.0/lcmm/R/Brandom.R | 3 lcmm-2.0.0/lcmm/R/Contlcmm.R | 404 lcmm-2.0.0/lcmm/R/Diffepoce.R | 8 lcmm-2.0.0/lcmm/R/ItemInfo.R | 6 lcmm-2.0.0/lcmm/R/Jointlcmm.R | 536 - lcmm-2.0.0/lcmm/R/Ordlcmm.R | 303 lcmm-2.0.0/lcmm/R/WaldMult.R | 2 lcmm-2.0.0/lcmm/R/dynpred.R | 4 lcmm-2.0.0/lcmm/R/epoce.R | 4 lcmm-2.0.0/lcmm/R/hlme.R | 431 lcmm-2.0.0/lcmm/R/lcmm-package.R | 1 lcmm-2.0.0/lcmm/R/lcmm.R | 36 lcmm-2.0.0/lcmm/R/loglik.R |only lcmm-2.0.0/lcmm/R/mpjlcmm.R | 369 lcmm-2.0.0/lcmm/R/multlcmm.R | 380 lcmm-2.0.0/lcmm/R/permut.R | 22 lcmm-2.0.0/lcmm/R/predYmedian.R | 4 lcmm-2.0.0/lcmm/R/predictYcond.R | 12 lcmm-2.0.0/lcmm/R/simulate.R | 14 lcmm-2.0.0/lcmm/R/summary.Jointlcmm.R | 19 lcmm-2.0.0/lcmm/R/summary.hlme.R | 18 lcmm-2.0.0/lcmm/R/summary.lcmm.R | 18 lcmm-2.0.0/lcmm/R/summary.mpjlcmm.R | 121 lcmm-2.0.0/lcmm/R/summary.multlcmm.R | 18 lcmm-2.0.0/lcmm/R/summarytable.R | 8 lcmm-2.0.0/lcmm/R/update.mpjlcmm.R | 18 lcmm-2.0.0/lcmm/build/partial.rdb |binary lcmm-2.0.0/lcmm/build/vignette.rds |binary lcmm-2.0.0/lcmm/inst/doc/introduction.Rmd | 27 lcmm-2.0.0/lcmm/inst/doc/introduction.html | 136 lcmm-2.0.0/lcmm/inst/doc/latent_class_model_with_hlme.Rmd | 4 lcmm-2.0.0/lcmm/inst/doc/latent_class_model_with_hlme.html | 85 lcmm-2.0.0/lcmm/inst/doc/latent_process_model_with_lcmm.Rmd | 2 lcmm-2.0.0/lcmm/inst/doc/latent_process_model_with_lcmm.html | 44 lcmm-2.0.0/lcmm/inst/doc/latent_process_model_with_multlcmm.Rmd | 15 lcmm-2.0.0/lcmm/inst/doc/latent_process_model_with_multlcmm.html | 112 lcmm-2.0.0/lcmm/inst/doc/latent_process_model_with_multlcmm_IRT.R |only lcmm-2.0.0/lcmm/inst/doc/latent_process_model_with_multlcmm_IRT.Rmd |only lcmm-2.0.0/lcmm/inst/doc/latent_process_model_with_multlcmm_IRT.html |only lcmm-2.0.0/lcmm/inst/doc/pre_normalizing.Rmd | 2 lcmm-2.0.0/lcmm/inst/doc/pre_normalizing.html | 34 lcmm-2.0.0/lcmm/inst/doc/usual_problems.Rmd | 10 lcmm-2.0.0/lcmm/inst/doc/usual_problems.html | 102 lcmm-2.0.0/lcmm/man/Jointlcmm.Rd | 20 lcmm-2.0.0/lcmm/man/WaldMult.Rd | 2 lcmm-2.0.0/lcmm/man/hlme.Rd | 64 lcmm-2.0.0/lcmm/man/lcmm.Rd | 20 lcmm-2.0.0/lcmm/man/loglik.Rd |only lcmm-2.0.0/lcmm/man/mpjlcmm.Rd | 26 lcmm-2.0.0/lcmm/man/multlcmm.Rd | 24 lcmm-2.0.0/lcmm/man/update.mpjlcmm.Rd |only lcmm-2.0.0/lcmm/src/Jointhet.f90 | 1293 +- lcmm-2.0.0/lcmm/src/Makevars | 30 lcmm-2.0.0/lcmm/src/compute.f90 |only lcmm-2.0.0/lcmm/src/cvpl.f90 | 4 lcmm-2.0.0/lcmm/src/hetmixCont.f90 | 2387 ----- lcmm-2.0.0/lcmm/src/hetmixMult.f90 | 1049 +- lcmm-2.0.0/lcmm/src/hetmixOrd.f90 | 4561 ++-------- lcmm-2.0.0/lcmm/src/hetmixlin.f90 | 783 - lcmm-2.0.0/lcmm/src/init.c | 12 lcmm-2.0.0/lcmm/src/iteminfo.f90 | 2 lcmm-2.0.0/lcmm/src/lcmm.h | 595 - lcmm-2.0.0/lcmm/src/mpjhet.f90 | 1593 +-- lcmm-2.0.0/lcmm/src/postprob2.f90 | 2 lcmm-2.0.0/lcmm/src/predictCont.f90 | 751 - lcmm-2.0.0/lcmm/src/predictMult.f90 | 2 lcmm-2.0.0/lcmm/src/predictYcond.f90 | 2 lcmm-2.0.0/lcmm/vignettes/gridsearch_hlme.RData |binary lcmm-2.0.0/lcmm/vignettes/introduction.Rmd | 27 lcmm-2.0.0/lcmm/vignettes/latent_class_model_with_hlme.Rmd | 4 lcmm-2.0.0/lcmm/vignettes/latent_process_model_with_lcmm.Rmd | 2 lcmm-2.0.0/lcmm/vignettes/latent_process_model_with_multlcmm.Rmd | 15 lcmm-2.0.0/lcmm/vignettes/latent_process_model_with_multlcmm_IRT.Rmd |only lcmm-2.0.0/lcmm/vignettes/models_IRT.RData |binary lcmm-2.0.0/lcmm/vignettes/models_mult.RData |binary lcmm-2.0.0/lcmm/vignettes/pre_normalizing.Rmd | 2 lcmm-2.0.0/lcmm/vignettes/usual_problems.Rmd | 10 86 files changed, 6206 insertions(+), 10599 deletions(-)
Title: Data Management of Large Hierarchical Data
Description: Import 'SPSS' data, handle and change 'SPSS' meta data, store and access large hierarchical data in 'SQLite' data bases.
Author: Benjamin Becker [aut, cre],
Karoline Sachse [ctb],
Johanna Busse [ctb]
Maintainer: Benjamin Becker <b.becker@iqb.hu-berlin.de>
Diff between eatGADS versions 0.19.1 dated 2022-01-27 and 0.20.0 dated 2022-06-24
DESCRIPTION | 6 MD5 | 234 +++++++++-------- NAMESPACE | 10 NEWS.md | 16 + R/assimilateValLabels.R | 3 R/checkFormat.r | 73 ++++- R/checkUniqueness.R | 7 R/checkUniqueness2.R |only R/checkValLabels.R | 6 R/composeVar.R |only R/equalGADS.R | 8 R/extractData.R | 51 ++- R/extractDataOld.R | 3 R/fillImputations.R |only R/fixEncoding.R |only R/getTrendGADS.R | 29 +- R/getTrendGADSOld.R | 4 R/import_raw2.R | 13 R/import_spss.R | 5 R/inspectMetaDifferences.R |only R/reuseMeta.R | 8 R/subImputations.R | 23 + README.md | 4 build/partial.rdb |binary inst/doc/createGADS.html | 306 +++++++++++++++++++++- inst/doc/getGADS.html | 319 +++++++++++++++++++++-- inst/doc/import_raw.html | 331 ++++++++++++++++++++++-- inst/doc/import_spss.html | 253 ++++++++++++++++++ inst/doc/meta_data.html | 342 +++++++++++++++++++++++-- inst/doc/recoding_forcedChoice.html | 360 ++++++++++++++++++++++++--- inst/doc/recoding_multipleChoice.html | 360 ++++++++++++++++++++++++--- man/applyChangeMeta.Rd | 102 +++---- man/applyLookup.Rd | 112 ++++---- man/applyLookup_expandVar.Rd | 106 +++---- man/applyNumCheck.Rd | 52 +-- man/assimilateValLabels.Rd | 71 ++--- man/calculateScale.Rd | 82 +++--- man/cbind.GADSdat.Rd | 46 +-- man/changeMissings.Rd | 84 +++--- man/changeSPSSformat.Rd | 60 ++-- man/changeValLabels.Rd | 80 +++--- man/changeVarLabels.Rd | 62 ++-- man/changeVarNames.Rd | 62 ++-- man/check4SPSS.Rd | 70 ++--- man/checkEmptyValLabels.Rd | 110 ++++---- man/checkFormat.Rd | 64 ++-- man/checkMissings.Rd | 80 +++--- man/checkTrendStructure.Rd | 48 +-- man/checkUniqueness.Rd | 72 ++--- man/checkUniqueness2.Rd |only man/checkValue.Rd | 66 ++-- man/checkVarNames.Rd | 58 ++-- man/clean_cache.Rd | 42 +-- man/collapseColumns.Rd | 110 ++++---- man/collapseMC_Text.Rd | 118 ++++---- man/collapseMultiMC_Text.Rd | 186 ++++++------- man/compareGADS.Rd | 98 +++---- man/composeVar.Rd |only man/createGADS.Rd | 62 ++-- man/createLookup.Rd | 96 +++---- man/createNumCheck.Rd | 60 ++-- man/dummies2char.Rd | 86 +++--- man/eatGADS.Rd | 50 +-- man/equalGADS.Rd | 52 ++- man/export_tibble.Rd | 50 +-- man/extractData.Rd | 121 +++++---- man/extractDataOld.Rd | 70 ++--- man/extractGADSdat.Rd | 54 ++-- man/extractMeta.Rd | 66 ++-- man/extractVars.Rd | 82 +++--- man/fac2dummies.Rd | 66 ++-- man/fac2dummies_complex.Rd | 74 ++--- man/fillImputations.Rd |only man/fixEncoding.Rd |only man/getChangeMeta.Rd | 66 ++-- man/getGADS.Rd | 58 ++-- man/getGADS_fast.Rd | 56 ++-- man/getTrendGADS.Rd | 98 +++---- man/getTrendGADSOld.Rd | 92 +++--- man/import_DF.Rd | 66 ++-- man/import_RDS.Rd | 46 +-- man/import_convertLabel.Rd | 44 +-- man/import_raw.Rd | 100 +++---- man/import_raw2.Rd | 90 +++--- man/import_spss.Rd | 83 +++--- man/import_stata.Rd | 50 +-- man/inspectDifferences.Rd | 78 ++--- man/inspectMetaDifferences.Rd |only man/labelsGADS.Rd | 54 ++-- man/matchValues_varLabels.Rd | 102 +++---- man/merge.GADSdat.Rd | 66 ++-- man/mergeLabels.Rd | 52 +-- man/miss2NA.Rd | 42 +-- man/multiChar2fac.Rd | 96 +++---- man/namesGADS.Rd | 62 ++-- man/orderLike.Rd | 44 +-- man/pisa.Rd | 50 +-- man/recode2NA.Rd | 88 +++--- man/recodeGADS.Rd | 128 ++++----- man/recodeString2NA.Rd | 42 +-- man/remove2NAchar.Rd | 94 +++---- man/removeValLabels.Rd | 90 +++--- man/reuseMeta.Rd | 86 +++--- man/splitGADS.Rd | 58 ++-- man/stringAsNumeric.Rd | 46 +-- man/subImputations.Rd | 64 ++-- man/updateMeta.Rd | 60 ++-- man/write_spss.Rd | 94 +++---- man/write_spss2.Rd | 100 +++---- tests/testthat.R | 8 tests/testthat/test_checkFormat.R | 24 + tests/testthat/test_checkUniqueness.R | 54 ++++ tests/testthat/test_collapseMC_Text.R | 12 tests/testthat/test_composeVar.R |only tests/testthat/test_equalGADS.R | 12 tests/testthat/test_extractData.R | 29 +- tests/testthat/test_extractDataOld.R | 1 tests/testthat/test_fillImputations.R |only tests/testthat/test_fixEncoding.R |only tests/testthat/test_getTrendGADS.R | 31 ++ tests/testthat/test_getTrendGADSOld.R | 13 tests/testthat/test_import_raw2.R | 21 + tests/testthat/test_inspectMetaDifferences.R |only tests/testthat/test_reuseMeta.R | 9 tests/testthat/test_subImputations.R | 28 +- 125 files changed, 5392 insertions(+), 3099 deletions(-)
Title: Covariance Based Single-Cell Decomposition of Bulk Expression
Data
Description: Provides accurate cell type proportion estimation by incorporating covariance structure in both single-cell and bulk RNA-seq datasets into the analysis. For more detail, see Karimnezhad, A. (2022) <doi:10.1101/2022.05.13.491858>.
Author: Ali Karimnezhad [aut, cre, ctb]
Maintainer: Ali Karimnezhad <ali.karimnezhad@gmail.com>
Diff between CSCDRNA versions 1.0.2 dated 2022-05-20 and 1.0.3 dated 2022-06-24
DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- R/CSCD.R | 4 ++-- README.md | 7 ++++++- man/CSCD.Rd | 4 ++-- 5 files changed, 19 insertions(+), 13 deletions(-)
Title: Efficient Simulation-Based Power and Sample Size Calculations
for a Broad Class of Late-Stage Clinical Trials
Description: The following modules are included in the package:
Adaptive designs with data-driven sample size or event count re-estimation,
Adaptive designs with data-driven treatment selection,
Adaptive designs with data-driven population selection,
Optimal selection of a futility stopping rule,
Event prediction in event-driven trials,
Adaptive trials with response-adaptive randomization (experimental module),
Traditional trials with multiple objectives (experimental module).
Traditional trials with cluster-randomized designs (experimental module).
Author: Alex Dmitrienko [aut, cre]
Maintainer: Alex Dmitrienko <admitrienko@mediana.us>
Diff between MedianaDesigner versions 0.7 dated 2021-12-19 and 0.8 dated 2022-06-24
CHANGELOG | 4 DESCRIPTION | 16 MD5 | 61 + NAMESPACE | 17 R/ADPopSel.r | 12 R/ADRand.r | 12 R/ADSSMod.r | 12 R/ADTreatSel.r | 4 R/ClustRand.r |only R/EventPred.r | 12 R/FutRule.r | 16 R/MultAdj.r | 37 - R/RcppExports.R | 12 R/ShinyApps.r | 7 R/common.r | 31 data/EventPredData.RData |binary inst/ClustRandApp |only man/ADRandExample.Rd | 9 man/ClustRand.Rd |only man/ClustRandApp.Rd |only man/ClustRandExample1.Rd |only man/ClustRandExample2.Rd |only man/GenerateReport.Rd | 3 man/MedianaDesigner-package.Rd | 13 man/MultAdj.Rd | 1 src/RcppExports.cpp | 45 + src/md.cpp | 1068 ++++++++++++++++++++++++++++++++- src/meddist.h | 9 src/medsupport.h | 72 ++ tests/testthat/helper-Checker.R |only tests/testthat/helper-ClustRandCases.R |only tests/testthat/test-ADTreatSel.r | 5 tests/testthat/test-ClustRand.r |only tests/testthat/test-MultAdj.r | 46 - 34 files changed, 1387 insertions(+), 137 deletions(-)
More information about MedianaDesigner at CRAN
Permanent link
Title: Targets for JAGS Workflows
Description: Bayesian data analysis usually incurs long runtimes
and cumbersome custom code.
A pipeline toolkit tailored to Bayesian statisticians,
the 'jagstargets' R package is leverages
'targets' and 'R2jags' to ease this burden.
'jagstargets' makes it super easy to set up scalable
JAGS pipelines that automatically parallelize the computation
and skip expensive steps when the results are already up to date.
Minimal custom code is required, and there is no need to manually
configure branching, so usage is much easier than 'targets' alone.
For the underlying methodology, please refer
to the documentation of 'targets' <doi:10.21105/joss.02959> and 'JAGS'
(Plummer 2003) <https://www.r-project.org/conferences/DSC-2003/Proceedings/Plummer.pdf>.
Author: William Michael Landau [aut, cre]
,
David Lawrence Miller [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between jagstargets versions 1.0.2 dated 2022-05-03 and 1.0.3 dated 2022-06-24
DESCRIPTION | 6 +-- MD5 | 47 +++++++++++++------------- NAMESPACE | 2 + NEWS.md | 4 ++ R/tar_jags_df.R | 4 +- R/tar_jags_package.R | 2 - R/tar_jags_rep.R | 24 ++++++++++++- build/vignette.rds |binary inst/doc/introduction.R | 8 ++-- inst/doc/introduction.Rmd | 8 ++-- inst/doc/introduction.html | 28 +++++++-------- inst/doc/simulation.R | 14 +++---- inst/doc/simulation.Rmd | 16 ++++---- inst/doc/simulation.html | 52 ++++++++++++++--------------- man/tar_jags.Rd | 8 +++- man/tar_jags_rep.Rd | 8 +++- man/tar_jags_rep_data_batch.Rd |only man/tar_jags_rep_dic.Rd | 8 +++- man/tar_jags_rep_draws.Rd | 8 +++- man/tar_jags_rep_summary.Rd | 8 +++- tests/testthat/test-tar_jags_rep_dic.R | 2 - tests/testthat/test-tar_jags_rep_draws.R | 2 - tests/testthat/test-tar_jags_rep_summary.R | 13 ++++++- vignettes/introduction.Rmd | 8 ++-- vignettes/simulation.Rmd | 16 ++++---- 25 files changed, 184 insertions(+), 112 deletions(-)
Title: The 2019 Novel Coronavirus COVID-19 (2019-nCoV) Dataset
Description: Provides a daily summary of the Coronavirus (COVID-19) cases by state/province. Data source: Johns Hopkins University Center for Systems Science and Engineering (JHU CCSE) Coronavirus <https://systems.jhu.edu/research/public-health/ncov/>.
Author: Rami Krispin [aut, cre],
Jarrett Byrnes [aut]
Maintainer: Rami Krispin <rami.krispin@gmail.com>
Diff between coronavirus versions 0.3.31 dated 2021-10-15 and 0.3.32 dated 2022-06-24
coronavirus-0.3.31/coronavirus/man/figures/2019-nCoV-CDC-23312_without_background.png |only coronavirus-0.3.32/coronavirus/DESCRIPTION | 8 coronavirus-0.3.32/coronavirus/MD5 | 25 - coronavirus-0.3.32/coronavirus/NEWS.md | 5 coronavirus-0.3.32/coronavirus/R/refresh_coronvirus.R | 2 coronavirus-0.3.32/coronavirus/README.md | 194 +++---- coronavirus-0.3.32/coronavirus/build/vignette.rds |binary coronavirus-0.3.32/coronavirus/data/coronavirus.rda |binary coronavirus-0.3.32/coronavirus/data/covid19_vaccine.rda |binary coronavirus-0.3.32/coronavirus/inst/doc/covid19R.html | 246 ---------- coronavirus-0.3.32/coronavirus/man/figures/brazil_cases.svg | 2 coronavirus-0.3.32/coronavirus/man/figures/dashboard.png |binary coronavirus-0.3.32/coronavirus/man/figures/top20_countries.svg | 2 coronavirus-0.3.32/coronavirus/man/figures/treemap_conf.svg | 2 14 files changed, 129 insertions(+), 357 deletions(-)
Title: Single Trial Analysis (STA) of Field Trials
Description: Phenotypic analysis of field trials using mixed models with and
without spatial components. One of a series of statistical genetic packages
for streamlining the analysis of typical plant breeding experiments developed
by Biometris.
Some functions have been created to be used in conjunction with the R
package 'asreml' for the 'ASReml' software, which can be obtained upon
purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r>).
Author: Bart-Jan van Rossum [aut, cre]
,
Fred van Eeuwijk [ctb] ,
Martin Boer [ctb] ,
Marcos Malosetti [ctb] ,
Daniela Bustos-Korts [ctb] ,
Emilie J. Millet [ctb] ,
Joao Paulo [ctb] ,
Maikel Verouden [ctb] ,
Willem Kruijer [ctb] ,
Ron Wehrens [ctb] ,
Choazhi [...truncated...]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenSTA versions 1.0.8 dated 2021-05-25 and 1.0.9 dated 2022-06-24
DESCRIPTION | 17 MD5 | 60 - NEWS.md | 7 R/createSTA.R | 2 R/extractSTA.R | 21 R/fitTD.R | 9 R/fitTDAsreml.R | 12 R/layoutPlot.R | 10 R/sysdata.rda |binary README.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/statgenSTA.R | 6 inst/doc/statgenSTA.Rmd | 228 ++++--- inst/doc/statgenSTA.html | 1085 ++++++++++++++++++++++++++++------- inst/reports/modelReport.Rnw | 12 man/extractSTA.Rd | 2 man/figures/README-mapPlot-1.png |binary man/figures/README-spatialPlot-1.png |binary man/fitTD.Rd | 4 man/statgenSTA-package.Rd | 10 man/summary.TD.Rd | 8 tests/testthat/Rplots.pdf |binary tests/testthat/test-ExtractAsreml.R | 2 tests/testthat/test-ExtractLme4.R | 2 tests/testthat/test-ExtractSpATS.R | 10 tests/testthat/test-fitTDLme4.R | 7 tests/testthat/test-fitTDSpATS.R | 7 tests/testthat/test-layoutPlot.R | 8 vignettes/bibliography.bib | 2 vignettes/statgenSTA.Rmd | 228 ++++--- 31 files changed, 1289 insertions(+), 474 deletions(-)
Title: Prediction Intervals
Description: An implementation of prediction intervals for overdispersed count data,
for overdispersed binomial data and for linear random effects models.
Author: Max Menssen [aut, cre]
Maintainer: Max Menssen <menssen@cell.uni-hannover.de>
Diff between predint versions 1.1.0 dated 2022-04-29 and 1.1.1 dated 2022-06-24
DESCRIPTION | 8 +++--- MD5 | 38 +++++++++++++++------------- NAMESPACE | 2 + NEWS.md | 11 ++++++++ R/beta_bin_pi.R | 65 +++++++++++++++++++++++++++---------------------- R/lmer_bs.R |only R/lmer_pi.R | 3 +- R/lmer_pi_futmat.R | 29 ++++++++++++--------- R/lmer_pi_futvec.R | 19 ++++++++------ R/lmer_pi_unstruc.R | 19 ++++++++------ R/quasi_bin_pi.R | 32 ++++++++++++------------ R/quasi_pois_pi.R | 30 ++++++++++++---------- R/rbbinom.R | 7 ++++- README.md | 57 ++++++++++++++++++++++++++++++------------ man/beta_bin_pi.Rd | 11 +++++--- man/lmer_bs.Rd |only man/lmer_pi_futmat.Rd | 15 ++++++----- man/lmer_pi_futvec.Rd | 13 ++++++--- man/lmer_pi_unstruc.Rd | 13 ++++++--- man/quasi_bin_pi.Rd | 11 +++++--- man/quasi_pois_pi.Rd | 11 +++++--- 21 files changed, 240 insertions(+), 154 deletions(-)
Title: EMF Graphics Output Device
Description: Output graphics to EMF+/EMF.
Author: Philip Johnson
Maintainer: Philip Johnson <plfj@umd.edu>
Diff between devEMF versions 4.0-2 dated 2020-10-01 and 4.1 dated 2022-06-24
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 12 ++++++++++++ R/emf.R | 10 +++++++++- man/emf.Rd | 12 +++++++----- src/devEMF.cpp | 6 ++++-- src/fontmetrics.h | 10 ++++++++-- 7 files changed, 50 insertions(+), 20 deletions(-)
Title: Interface to 'the CAVD DataSpace'
Description: Provides a convenient API interface to access immunological data
within 'the CAVD DataSpace'(<https://dataspace.cavd.org>), a data sharing
and discovery tool that facilitates exploration of HIV immunological data
from pre-clinical and clinical HIV vaccine studies.
Author: Ju Yeong Kim [aut],
Sean Hughes [rev],
Jason Taylor [aut, cre],
Helen Miller [aut],
CAVD DataSpace [cph]
Maintainer: Jason Taylor <jmtaylor@fredhutch.org>
Diff between DataSpaceR versions 0.7.5 dated 2021-09-02 and 0.7.6 dated 2022-06-24
DESCRIPTION | 6 MD5 | 54 +- NEWS.md | 5 R/DataSpaceConnection.R | 64 ++ R/DataSpaceMab.R | 36 + README.md | 8 build/vignette.rds |binary inst/doc/DataSpaceR.Rmd | 51 +- inst/doc/DataSpaceR.html | 594 +++++++++++++++++---------- inst/doc/Monoconal_Antibody_Data.Rmd | 95 +++- inst/doc/Monoconal_Antibody_Data.html | 450 +++++++++++++++----- inst/doc/Non_Integrated_Datasets.Rmd | 50 +- inst/doc/Non_Integrated_Datasets.html | 337 +++++++++++---- inst/doc/Publication_Data.Rmd | 35 - inst/doc/Publication_Data.html | 538 ++++++++++++++++-------- inst/doc/Virus_Name_Mapping_Tables.Rmd |only inst/doc/Virus_Name_Mapping_Tables.html |only man/DataSpaceConnection.Rd | 4 man/DataSpaceMab.Rd | 11 tests/testthat/test-connection.R | 22 - tests/testthat/test-mab.R | 12 vignettes/DataSpaceR.Rmd | 51 +- vignettes/Monoconal_Antibody_Data.Rmd | 95 +++- vignettes/Monoconal_Antibody_Data.Rmd.orig | 24 - vignettes/Non_Integrated_Datasets.Rmd | 50 +- vignettes/Publication_Data.Rmd | 35 - vignettes/Publication_Data.Rmd.orig | 1 vignettes/Virus_Name_Mapping_Tables.Rmd |only vignettes/Virus_Name_Mapping_Tables.Rmd.orig |only vignettes/precompile.R | 1 30 files changed, 1808 insertions(+), 821 deletions(-)
Title: Syntax Highlighting and Automatic Linking
Description: Syntax highlighting of R code, specifically designed for the
needs of 'RMarkdown' packages like 'pkgdown', 'hugodown', and
'bookdown'. It includes linking of function calls to their
documentation on the web, and automatic translation of ANSI escapes in
output to the equivalent HTML.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between downlit versions 0.4.0 dated 2021-10-29 and 0.4.1 dated 2022-06-24
DESCRIPTION | 19 +++-- MD5 | 42 ++++++------ NEWS.md | 25 ++++++- R/evaluate.R | 4 - R/highlight.R | 54 ++++++++++++++-- R/link.R | 109 +++++++++++++++++++-------------- R/topic-index.R | 12 +-- R/utils.R | 25 ------- README.md | 2 man/downlit-package.Rd | 2 man/evaluate_and_highlight.Rd | 4 - man/href_topic.Rd | 7 +- tests/testthat/_snaps/downlit-html.md | 4 - tests/testthat/_snaps/evaluate.md | 4 - tests/testthat/_snaps/highlight.md | 33 ++++++++- tests/testthat/test-downlit-html.txt | 9 +- tests/testthat/test-downlit-md-v20.txt | 3 tests/testthat/test-downlit-md-v21.txt | 2 tests/testthat/test-highlight.R | 56 ++++++++++++---- tests/testthat/test-highlight.txt | 24 +++---- tests/testthat/test-link.R | 20 +++++- tests/testthat/test-topic-index.R | 1 22 files changed, 288 insertions(+), 173 deletions(-)
Title: R-to-Java Interface for 'CMA-ES'
Description: Tool for providing access to the Java version 'CMAEvolutionStrategy' of
Nikolaus Hansen. 'CMA-ES' is the Covariance Matrix Adaptation Evolution Strategy,
see <https://www.lri.fr/~hansen/cmaes_inmatlab.html#java>.
Author: Wolfgang Konen <wolfgang.konen@fh-koeln.de>, Nikolaus Hansen <hansen .AT. lri.fr>
Maintainer: Wolfgang Konen <wolfgang.konen@fh-koeln.de>
Diff between rCMA versions 1.1 dated 2015-04-30 and 1.1.1 dated 2022-06-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 2 ++ 3 files changed, 8 insertions(+), 6 deletions(-)
Title: 'rChoiceDialogs' Collection
Description: Collection of portable choice dialog widgets.
Author: Alex Lisovich [aut, cre],
Roger Day [aut],
Sun Microsystems, Inc [cph]
Maintainer: Alex Lisovich <alex.lisovich@gmail.com>
Diff between rChoiceDialogs versions 1.0.6 dated 2014-09-11 and 1.0.6.1 dated 2022-06-24
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 + build/vignette.rds |binary inst/doc/rChoiceDialogs.R | 1 - inst/doc/rChoiceDialogs.pdf |binary 6 files changed, 11 insertions(+), 11 deletions(-)
More information about rChoiceDialogs at CRAN
Permanent link
Title: Probability Models for Ranking Data
Description: Descriptive statistics (mean rank, pairwise frequencies, and marginal matrix), Analytic Hierarchy Process models (with Saaty's and Koczkodaj's inconsistencies), probability models (Luce models, distance-based models, and rank-ordered logit models) and visualization with multidimensional preference analysis for ranking data are provided. Current, only complete rankings are supported by this package.
Author: Paul H. Lee and Philip L. H. Yu
Maintainer: Paul H. Lee <honglee@graduate.hku.hk>
Diff between pmr versions 1.2.5 dated 2015-05-14 and 1.2.5.1 dated 2022-06-24
DESCRIPTION | 7 ++++--- MD5 | 16 ++++++++-------- NAMESPACE | 4 ++++ data/big4.rda |binary data/breasttissue.rda |binary data/idea.rda |binary data/leisure.black.rda |binary data/leisure.white.rda |binary data/song.rda |binary 9 files changed, 16 insertions(+), 11 deletions(-)
Title: Pedigree Functions
Description: Pedigree related functions.
Author: Albart Coster [aut, cre]
Maintainer: Albart Coster <albart@dairyconsult.nl>
Diff between pedigree versions 1.4 dated 2012-12-17 and 1.4.1 dated 2022-06-24
DESCRIPTION | 12 +++++++----- MD5 | 6 +++--- NAMESPACE | 4 ++++ src/Pedigree.cpp | 4 ++-- 4 files changed, 16 insertions(+), 10 deletions(-)
Title: Retrieve and Build NBCI Taxonomic Data
Description: Makes NCBI taxonomic data locally available and
searchable as an R object.
Author: Jon Eastman
Maintainer: Jon Eastman <jonathan.eastman@gmail.com>
Diff between ncbit versions 2013.03.29 dated 2013-04-03 and 2013.03.29.1 dated 2022-06-24
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NAMESPACE | 4 +++- data/ncbi.rda |binary 4 files changed, 12 insertions(+), 10 deletions(-)
Title: Functions for Estimation and Inference of Selection in
Age-Structured Populations
Description: Provides methods for estimation and statistical
inference on directional and fluctuating selection in age-structured
populations.
Author: Thomas Kvalnes
Maintainer: Thomas Kvalnes <thomas.kvalnes@ntnu.no>
Diff between lmf versions 1.2 dated 2013-10-31 and 1.2.1 dated 2022-06-24
lmf-1.2.1/lmf/DESCRIPTION | 12 ++++++------ lmf-1.2.1/lmf/MD5 | 7 +++---- lmf-1.2.1/lmf/NAMESPACE | 12 +++++++++++- lmf-1.2.1/lmf/data/sparrowdata.rda |binary lmf-1.2/lmf/R/lmf-internal.R |only 5 files changed, 20 insertions(+), 11 deletions(-)
Title: Linguistic Typology and Mapping
Description: Provides R with the Glottolog database <https://glottolog.org/> and some more abilities for purposes of linguistic mapping. The Glottolog database contains the catalogue of languages of the world. This package helps researchers to make a linguistic maps, using philosophy of the Cross-Linguistic Linked Data project <https://clld.org/>, which allows for while at the same time facilitating uniform access to the data across publications. A tutorial for this package is available on GitHub pages <https://docs.ropensci.org/lingtypology/> and package vignette. Maps created by this package can be used both for the investigation and linguistic teaching. In addition, package provides an ability to download data from typological databases such as WALS, AUTOTYP and some others and to create your own database website.
Author: George Moroz [aut, cre] ,
Kirill Koncha [ctb] ,
Mikhail Leonov [ctb],
Anna Smirnova [ctb],
Sasha Shakhnova [ctb]
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between lingtypology versions 1.1.8 dated 2021-12-10 and 1.1.9 dated 2022-06-24
DESCRIPTION | 11 MD5 | 88 ++-- NAMESPACE | 2 NEWS | 8 R/abvd.R | 2 R/abvd.feature.R | 4 R/autotyp.R | 7 R/autotyp.feature.R | 132 ++----- R/bantu.R | 2 R/bantu.feature.R | 6 R/countries.R |only R/country.lang.R | 23 + R/glottolog.R | 10 R/lang.country.R | 41 -- R/level.lang.R |only R/map.feature.R | 20 - R/valpal.feature.R | 2 build/vignette.rds |binary data/autotyp.RData |binary data/countries.RData |only data/glottolog.RData |binary inst/doc/lingtypology_creating_maps.html | 469 +++++++++++++++++++++---- inst/doc/lingtypology_db_API.R | 6 inst/doc/lingtypology_db_API.Rmd | 17 inst/doc/lingtypology_db_API.html | 271 +++++++++++++- inst/doc/lingtypology_dplyr.Rmd | 2 inst/doc/lingtypology_dplyr.html | 337 ++++++++++++++++- inst/doc/lingtypology_glottolog_functions.Rmd | 1 inst/doc/lingtypology_glottolog_functions.html | 279 +++++++++++++- inst/doc/lingtypology_intro.html | 234 +++++++++++- man/abvd.Rd | 2 man/abvd.feature.Rd | 2 man/autotyp.Rd | 9 man/autotyp.feature.Rd | 2 man/bantu.Rd | 2 man/bantu.feature.Rd | 2 man/countries.Rd |only man/country.lang.Rd | 4 man/glottolog.Rd | 10 man/lang.country.Rd | 2 man/level.lang.Rd |only man/valpal.feature.Rd | 2 tests/testthat/test-country-lang.R | 6 tests/testthat/test-level.lang.R |only tests/testthat/test-mapfeature.R | 28 - vignettes/lingtypology_db_API.Rmd | 17 vignettes/lingtypology_dplyr.Rmd | 2 vignettes/lingtypology_glottolog_functions.Rmd | 1 48 files changed, 1677 insertions(+), 388 deletions(-)
Title: Gaussian Processes for Pareto Front Estimation and Optimization
Description: Gaussian process regression models, a.k.a. Kriging models, are
applied to global multi-objective optimization of black-box functions.
Multi-objective Expected Improvement and Step-wise Uncertainty Reduction
sequential infill criteria are available. A quantification of uncertainty
on Pareto fronts is provided using conditional simulations.
Author: Mickael Binois, Victor Picheny
Maintainer: Mickael Binois <mickael.binois@inria.fr>
Diff between GPareto versions 1.1.6 dated 2021-05-31 and 1.1.7 dated 2022-06-24
DESCRIPTION | 12 MD5 | 67 ++-- NAMESPACE | 1 NEWS | 7 R/CPF.R | 194 +++++++------- R/GPareto-package.R | 344 ++++++++++++------------- R/GParetoptim.R | 554 ++++++++++++++++++++--------------------- R/ParetoSetDensity.R | 98 +++---- R/TestFunctions.R | 222 ++++++++-------- R/checkPredict.R | 38 +- R/crit_EMI.R | 118 ++++---- R/crit_SMS.R | 116 ++++---- R/crit_SUR.R | 164 ++++++------ R/crit_optimizer.R | 494 ++++++++++++++++++------------------ R/easyGParetoptim.R | 317 +++++++++++------------ R/fastfun.R | 200 +++++++------- R/getDesign.R | 126 ++++----- R/integration_design_optim.R | 112 ++++---- R/plotGPareto.R | 204 +++++++-------- R/plotParetoEmp.R | 80 ++--- R/plotSymDevFun.R | 104 +++---- R/plotSymDifRNP.R | 46 +-- R/plot_uncertainty.R | 88 +++--- R/predictkms.R | 8 build/partial.rdb |only build/vignette.rds |binary inst/doc/GPareto_vignette.R | 2 inst/doc/GPareto_vignette.Rnw | 4 inst/doc/GPareto_vignette.pdf |binary man/GPareto-package.Rd | 4 man/TestFunctions.Rd | 9 man/crit_optimizer.Rd | 2 man/easyGParetoptim.Rd | 2 src/RcppExports.cpp | 5 vignettes/GPareto_vignette.Rnw | 4 35 files changed, 1894 insertions(+), 1852 deletions(-)
Title: Geological Time Scale Plotting
Description: Functionality for adding the geological timescale to bivariate plots.
Author: Mark A. Bell <mark.bell521@gmail.com>.
Maintainer: Mark A. Bell <mark.bell521@gmail.com>
Diff between geoscale versions 2.0 dated 2015-05-13 and 2.0.1 dated 2022-06-24
geoscale-2.0.1/geoscale/DESCRIPTION | 9 +++++---- geoscale-2.0.1/geoscale/MD5 | 9 ++++----- geoscale-2.0.1/geoscale/NAMESPACE | 6 +++++- geoscale-2.0.1/geoscale/data/size.rda |binary geoscale-2.0.1/geoscale/data/timescales.rda |binary geoscale-2.0/geoscale/R/geoscale-internal.R |only 6 files changed, 14 insertions(+), 10 deletions(-)
Title: Deep Learning Toolkit in R
Description: Implement some deep learning architectures and neural network
algorithms, including BP,RBM,DBN,Deep autoencoder and so on.
Author: Xiao Rong
Maintainer: Xiao Rong <runxiao@gmail.com>
Diff between deepnet versions 0.2 dated 2014-03-20 and 0.2.1 dated 2022-06-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 4 ++++ 3 files changed, 10 insertions(+), 6 deletions(-)
Title: Extend 'cxxfunction' by Saving the Dynamic Shared Objects
Description: Extend 'cxxfunction' by saving the dynamic shared objects
for reusing across R sessions.
Author: Jiqiang Guo <guojq28@gmail.com>
Maintainer: Jiqiang Guo <guojq28@gmail.com>
Diff between cxxfunplus versions 1.0 dated 2012-08-19 and 1.0.1 dated 2022-06-24
DESCRIPTION | 14 ++++++++------ MD5 | 4 ++-- NAMESPACE | 5 ++++- 3 files changed, 14 insertions(+), 9 deletions(-)
Title: Inferring Large-Scale Gene Networks with C3NET
Description: Allows inferring gene regulatory networks
with direct physical interactions from microarray expression
data using C3NET.
Author: Gokmen Altay, Frank Emmert-Streib
Maintainer: Gokmen Altay <altayscience@gmail.com>
Diff between c3net versions 1.1.1 dated 2011-03-01 and 1.1.1.1 dated 2022-06-24
DESCRIPTION | 12 ++++++------ MD5 |only NAMESPACE |only data/expdata.rda |binary data/truenet.rda |binary 5 files changed, 6 insertions(+), 6 deletions(-)
Title: Additivity Tests in the Two Way Anova with Single Sub-Class
Numbers
Description: Implementation of the Tukey, Mandel, Johnson-Graybill, LBI, Tusell
and modified Tukey non-additivity tests.
Author: Marie Simeckova [aut], Thomas Rusch [aut], Petr Simecek [cre]
Maintainer: Petr Simecek <simecek@gmail.com>
Diff between additivityTests versions 1.1-4 dated 2014-12-23 and 1.1-4.1 dated 2022-06-24
DESCRIPTION | 8 MD5 | 16 NAMESPACE | 4 build/vignette.rds |binary data/Boik.rda |binary inst/doc/additivityTests-vignette.R | 60 +- inst/doc/additivityTests-vignette.html | 799 +++++++++++++++++---------------- man/Boik.Rd | 2 man/tusell.test.Rd | 2 9 files changed, 456 insertions(+), 435 deletions(-)
More information about additivityTests at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-13 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-13 1.2
2011-03-31 1.1
2011-03-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-23 1.7.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-08 2.1.0
2010-04-05 1.2.0
Title: Efficient Monitoring of Global Biodiversity Portfolios
Description: Biodiversity areas, especially primary forest, serve a
multitude of functions for local economy, regional functionality of
the ecosystems as well as the global health of our planet. Recently,
adverse changes in human land use practices and climatic responses to
increased greenhouse gas emissions, put these biodiversity areas under
a variety of different threats. The present package helps to analyse a
number of biodiversity indicators based on freely available
geographical datasets. It supports computational efficient routines
that allow the analysis of potentially global biodiversity portfolios.
The primary use case of the package is to support evidence based
reporting of an organization's effort to protect biodiversity areas
under threat and to identify regions were intervention is most duly
needed.
Author: Darius A. Goergen [aut, cre],
Om Prakash Bhandari [aut]
Maintainer: Darius A. Goergen <darius2402@web.de>
Diff between mapme.biodiversity versions 0.1.1 dated 2022-05-02 and 0.1.2 dated 2022-06-24
mapme.biodiversity-0.1.1/mapme.biodiversity/inst/res/worldpop/tileindex_worldpop.gpkg |only mapme.biodiversity-0.1.1/mapme.biodiversity/tests/testthat/_snaps/get_climaticVariables.md |only mapme.biodiversity-0.1.1/mapme.biodiversity/tests/testthat/_snaps/get_droughtInd.md |only mapme.biodiversity-0.1.1/mapme.biodiversity/tests/testthat/_snaps/get_esalandcover.md |only mapme.biodiversity-0.1.1/mapme.biodiversity/tests/testthat/_snaps/get_mangrove.md |only mapme.biodiversity-0.1.1/mapme.biodiversity/tests/testthat/test-get_accessibility.R |only mapme.biodiversity-0.1.1/mapme.biodiversity/tests/testthat/test-get_droughtInd.R |only mapme.biodiversity-0.1.2/mapme.biodiversity/DESCRIPTION | 12 mapme.biodiversity-0.1.2/mapme.biodiversity/MD5 | 76 - mapme.biodiversity-0.1.2/mapme.biodiversity/NEWS.md | 8 mapme.biodiversity-0.1.2/mapme.biodiversity/R/calc_biome.R | 1 mapme.biodiversity-0.1.2/mapme.biodiversity/R/calc_teow.R | 1 mapme.biodiversity-0.1.2/mapme.biodiversity/R/get_esalandcover.R | 30 mapme.biodiversity-0.1.2/mapme.biodiversity/R/get_soilgrids.R | 2 mapme.biodiversity-0.1.2/mapme.biodiversity/R/get_srtmdem.R | 10 mapme.biodiversity-0.1.2/mapme.biodiversity/R/get_traveltime.R | 8 mapme.biodiversity-0.1.2/mapme.biodiversity/R/get_worldpop.R | 2 mapme.biodiversity-0.1.2/mapme.biodiversity/R/utils.R | 15 mapme.biodiversity-0.1.2/mapme.biodiversity/build/partial.rdb |binary mapme.biodiversity-0.1.2/mapme.biodiversity/inst/doc/terminology.html | 275 ++++++ mapme.biodiversity-0.1.2/mapme.biodiversity/inst/doc/userguide.html | 402 +++++++++- mapme.biodiversity-0.1.2/mapme.biodiversity/man/srtmdem.Rd | 2 mapme.biodiversity-0.1.2/mapme.biodiversity/man/worldpop.Rd | 2 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/_snaps/get_chirps.md | 4 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/_snaps/get_nasagrace.md |only mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/_snaps/get_soilgrids.md | 4 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/_snaps/portfolio.md | 17 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-calc_indicator.R | 27 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-calc_treecover.R | 1 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-get_chirps.R | 5 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-get_climaticVariables.R | 19 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-get_esalandcover.R | 10 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-get_greenhouse.R | 4 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-get_lossyear.R | 22 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-get_mangrove.R | 9 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-get_nasagrace.R |only mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-get_resources.R | 42 - mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-get_soilgrids.R | 61 - mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-get_srtmdem.R | 2 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-get_traveltime.R |only mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-get_treecover.R | 7 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-get_worldpop.R | 2 mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-portfolio.R | 122 +-- mapme.biodiversity-0.1.2/mapme.biodiversity/tests/testthat/test-utils.R | 25 44 files changed, 891 insertions(+), 338 deletions(-)
More information about mapme.biodiversity at CRAN
Permanent link
Title: Flexible and Reproducible Label Designs
Description: An open-source R package to deploys flexible and reproducible labels using layers.
The 'huito' package is part of the 'inkaverse' project for developing different procedures and
tools used in plant science and experimental designs.
Learn more about the 'inkaverse' project at <https://inkaverse.com/>.
Author: Flavio Lozano-Isla [aut, cre] ,
Inkaverse [cph]
Maintainer: Flavio Lozano-Isla <flavjack@gmail.com>
Diff between huito versions 0.1.4 dated 2022-05-26 and 0.2.0 dated 2022-06-24
DESCRIPTION | 8 - MD5 | 48 +++---- NAMESPACE | 1 NEWS.md | 9 + R/include_shape.R | 109 +++++++++-------- R/label_layout.R | 18 +- R/label_print.R | 307 ++++++++++++++++++++++++++----------------------- R/shape_hexagon.R | 142 ++++++++++++---------- inst/doc/germinar.R | 19 --- inst/doc/germinar.Rmd | 20 --- inst/doc/germinar.html | 68 ++++------ inst/doc/labels.R | 15 +- inst/doc/labels.Rmd | 17 +- inst/doc/labels.html | 99 ++++++++------- inst/doc/stickers.R | 17 -- inst/doc/stickers.Rmd | 18 -- inst/doc/stickers.html | 57 ++++----- man/figures/logo.png |binary man/include_shape.Rd | 37 +++-- man/label_layout.Rd | 86 ++++++------- man/label_print.Rd | 18 +- man/shape_hexagon.Rd | 32 ++--- vignettes/germinar.Rmd | 20 --- vignettes/labels.Rmd | 17 +- vignettes/stickers.Rmd | 18 -- 25 files changed, 618 insertions(+), 582 deletions(-)
Title: Client Interface for 'openEO' Servers
Description: Access data and processing functionalities of 'openEO' compliant back-ends in R.
Author: Florian Lahn [aut, cre],
Peter James Zellner [ctb],
Matthias Mohr [ctb]
Maintainer: Florian Lahn <florian.lahn@eftas.com>
Diff between openeo versions 1.2.0 dated 2022-05-10 and 1.2.1 dated 2022-06-24
DESCRIPTION | 6 MD5 | 43 NAMESPACE | 530 +-- NEWS.md | 550 +-- R/argument_types.R | 6004 +++++++++++++++++----------------- R/authentication.R | 4 R/coerce-functions.R | 2 R/jobs.R | 1266 +++---- R/ops.R | 1952 +++++------ R/print-functions.R | 1300 +++---- R/process_graph_building.R | 2048 +++++------ R/sample_data.R | 3 R/user.R | 1 R/user_defined_processes.R | 3 R/utilities.R | 424 +- R/zzz.R | 38 inst/doc/getting_started.html | 299 + inst/doc/sample_data.html | 128 man/GeoJson.Rd | 7 man/OIDCAuth.Rd | 2 man/Parameter.Rd | 104 tests/testthat/test-argument-array.R |only tests/testthat/test-geojson-as-list.R | 75 23 files changed, 7595 insertions(+), 7194 deletions(-)
More information about provSummarizeR at CRAN
Permanent link
Title: Generation of IRT Response Patterns under Computerized Adaptive
Testing
Description: Provides routines for the generation of response patterns under unidimensional dichotomous and polytomous computerized adaptive testing (CAT) framework. It holds many standard functions to estimate ability, select the first item(s) to administer and optimally select the next item, as well as several stopping rules. Options to control for item exposure and content balancing are also available (Magis and Barrada (2017) <doi:10.18637/jss.v076.c01>).
Author: David Magis , Gilles Raiche , Juan Ramon Barrada
Maintainer: Cheng Hua <chuabest@gmail.com>
Diff between catR versions 3.16 dated 2018-07-28 and 3.17 dated 2022-06-24
catR-3.16/catR/data/cat_pav.txt.gz |only catR-3.16/catR/data/tcals.txt.gz |only catR-3.17/catR/DESCRIPTION | 17 catR-3.17/catR/MD5 | 64 catR-3.17/catR/NEWS | 2185 +++++++++++++++--------------- catR-3.17/catR/build/partial.rdb |binary catR-3.17/catR/data/cat_pav.txt |only catR-3.17/catR/data/tcals.txt |only catR-3.17/catR/man/EPV.Rd | 3 catR-3.17/catR/man/GDI.Rd | 3 catR-3.17/catR/man/Ii.Rd | 3 catR-3.17/catR/man/Ji.Rd | 3 catR-3.17/catR/man/KL.Rd | 3 catR-3.17/catR/man/MEI.Rd | 3 catR-3.17/catR/man/MWI.Rd | 335 ++-- catR-3.17/catR/man/OIi.Rd | 3 catR-3.17/catR/man/Pi.Rd | 3 catR-3.17/catR/man/aStratified.Rd | 3 catR-3.17/catR/man/breakBank.Rd | 3 catR-3.17/catR/man/checkStopRule.Rd | 3 catR-3.17/catR/man/eapEst.Rd | 3 catR-3.17/catR/man/eapSem.Rd | 5 catR-3.17/catR/man/fullDist.Rd | 5 catR-3.17/catR/man/genDichoMatrix.Rd | 3 catR-3.17/catR/man/genPattern.Rd | 3 catR-3.17/catR/man/genPolyMatrix.Rd | 3 catR-3.17/catR/man/integrate.catR.Rd | 9 catR-3.17/catR/man/nextItem.Rd | 5 catR-3.17/catR/man/randomCAT.Rd | 15 catR-3.17/catR/man/semTheta.Rd | 7 catR-3.17/catR/man/simulateRespondents.Rd | 16 catR-3.17/catR/man/startItems.Rd | 5 catR-3.17/catR/man/test.cbList.Rd | 3 catR-3.17/catR/man/testList.Rd | 3 catR-3.17/catR/man/thetaEst.Rd | 7 35 files changed, 1395 insertions(+), 1331 deletions(-)
Title: Adherence to Medications
Description: Interactive graphical user interface (GUI) for the package
'AdhereR', allowing the user to access different data sources, to explore
the patterns of medication use therein, and the computation of various
measures of adherence. It is implemented using Shiny and HTML/CSS/JavaScript.
Author: Dan Dediu [aut, cre],
Alexandra Dima [aut],
Samuel Allemann [aut]
Maintainer: Dan Dediu <ddediu@gmail.com>
Diff between AdhereRViz versions 0.2.0 dated 2021-09-19 and 0.2.1 dated 2022-06-24
AdhereRViz-0.2.0/AdhereRViz/inst/interactivePlotShiny/www/AdhereR-logo.png |only AdhereRViz-0.2.1/AdhereRViz/DESCRIPTION | 19 AdhereRViz-0.2.1/AdhereRViz/MD5 | 32 AdhereRViz-0.2.1/AdhereRViz/NAMESPACE | 86 AdhereRViz-0.2.1/AdhereRViz/R/adhererviz.R | 26 AdhereRViz-0.2.1/AdhereRViz/build/vignette.rds |binary AdhereRViz-0.2.1/AdhereRViz/inst/CITATION | 40 AdhereRViz-0.2.1/AdhereRViz/inst/doc/adherer_interctive_plots.R | 272 AdhereRViz-0.2.1/AdhereRViz/inst/doc/adherer_interctive_plots.Rmd | 1328 - AdhereRViz-0.2.1/AdhereRViz/inst/doc/adherer_interctive_plots.html | 2573 +- AdhereRViz-0.2.1/AdhereRViz/inst/interactivePlotShiny/app.R |10484 +++++----- AdhereRViz-0.2.1/AdhereRViz/inst/interactivePlotShiny/r-code-highlight.css | 142 AdhereRViz-0.2.1/AdhereRViz/inst/interactivePlotShiny/rsconnect/shinyapps.io/ddediu/AdhereR.dcf | 24 AdhereRViz-0.2.1/AdhereRViz/inst/interactivePlotShiny/rsconnect/shinyapps.io/ddediu/AdhereR_Shiny_App.dcf | 24 AdhereRViz-0.2.1/AdhereRViz/inst/interactivePlotShiny/rsconnect/shinyapps.io/ddediu/interactiveplotshiny.dcf | 20 AdhereRViz-0.2.1/AdhereRViz/inst/interactivePlotShiny/www/adherer-logo.png |only AdhereRViz-0.2.1/AdhereRViz/man/plot_interactive_cma.Rd | 344 AdhereRViz-0.2.1/AdhereRViz/vignettes/adherer_interctive_plots.Rmd | 1328 - 18 files changed, 8806 insertions(+), 7936 deletions(-)
Title: A Service for Tidy Transcriptomics Software Suite
Description: It provides generic methods that are used by more than one package, avoiding conflicts. This package will be imported by 'tidySingleCellExperiment' and 'tidyseurat'.
Author: Stefano Mangiola [aut, cre]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Diff between ttservice versions 0.1.2 dated 2021-10-12 and 0.2.2 dated 2022-06-24
DESCRIPTION | 13 +++-- MD5 | 9 ++-- NAMESPACE | 10 ++++ R/methods.R | 114 +++++++++++++++++++++++++++++++++++++++++++++++++-- man/dplyr-methods.Rd |only man/join_features.Rd | 2 6 files changed, 132 insertions(+), 16 deletions(-)