Fri, 24 Jun 2022

Package zipcodeR updated to version 0.3.4 with previous version 0.3.3 dated 2021-09-22

Title: Data & Functions for Working with US ZIP Codes
Description: Make working with ZIP codes in R painless with an integrated dataset of U.S. ZIP codes and functions for working with them. Search ZIP codes by multiple geographies, including state, county, city & across time zones. Also included are functions for relating ZIP codes to Census data, geocoding & distance calculations.
Author: Gavin Rozzi [aut, cre]
Maintainer: Gavin Rozzi <gr@gavinrozzi.com>

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Package susieR updated to version 0.12.12 with previous version 0.11.92 dated 2021-11-12

Title: Sum of Single Effects Linear Regression
Description: Implements methods for variable selection in linear regression based on the "Sum of Single Effects" (SuSiE) model, as described in Wang et al (2020) <DOI:10.1101/501114> and Zou et al (2021) <DOI:10.1101/2021.11.03.467167>. These methods provide simple summaries, called "Credible Sets", for accurately quantifying uncertainty in which variables should be selected. The methods are motivated by genetic fine-mapping applications, and are particularly well-suited to settings where variables are highly correlated and detectable effects are sparse. The fitting algorithm, a Bayesian analogue of stepwise selection methods called "Iterative Bayesian Stepwise Selection" (IBSS), is simple and fast, allowing the SuSiE model be fit to large data sets (thousands of samples and hundreds of thousands of variables).
Author: Gao Wang [aut], Yuxin Zou [aut], Kaiqian Zhang [aut], Peter Carbonetto [aut, cre], Matthew Stephens [aut]
Maintainer: Peter Carbonetto <peter.carbonetto@gmail.com>

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Package jinjar updated to version 0.2.0 with previous version 0.1.1 dated 2022-05-01

Title: Template Engine Inspired by 'Jinja'
Description: Template engine powered by the 'inja' C++ library. Users write a template document, using syntax inspired by the 'Jinja' Python package, and then render the final document by passing data from R. The template syntax supports features such as variables, loops, conditions and inheritance.
Author: David Hall [aut, cre, cph] , Lars Berscheid [cph] , Niels Lohmann [cph]
Maintainer: David Hall <david.hall.physics@gmail.com>

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Package ymlthis updated to version 0.1.6 with previous version 0.1.5 dated 2021-09-15

Title: Write 'YAML' for 'R Markdown', 'bookdown', 'blogdown', and More
Description: Write 'YAML' front matter for R Markdown and related documents. Work with 'YAML' objects more naturally and write the resulting 'YAML' to your clipboard or to 'YAML' files related to your project.
Author: Malcolm Barrett [aut, cre] , Richard Iannone [aut] , RStudio [cph, fnd]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>

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Package Rgff updated to version 0.1.1 with previous version 0.1.0 dated 2022-06-23

Title: R Utilities for GFF Files
Description: R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.
Author: Juan Antonio Garcia-Martin [cre, aut] , Juan Carlos Oliveros [aut, ctb] , Rafael Torres-Perez [aut, ctb]
Maintainer: Juan Antonio Garcia-Martin <ja.garcia@cnb.csic.es>

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Package lefko3 updated to version 5.3.0 with previous version 5.2.0 dated 2022-05-18

Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Complete analytical environment for the construction and analysis of matrix population models and integral projection models. Includes the ability to construct historical matrices, which are 2d matrices comprising 3 consecutive times of demographic information. Estimates both raw and function-based forms of historical and standard ahistorical matrices. It also estimates function-based age-by-stage matrices and raw and function-based Leslie matrices.
Author: Richard P. Shefferson [aut, cre] , Johan Ehrlen [aut]
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>

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Package HotellingEllipse updated to version 1.1.0 with previous version 0.1.1 dated 2021-05-18

Title: Hotelling T-Square and Confidence Ellipse
Description: Functions to compute the semi-axes lengths and coordinate points of Hotelling ellipse. Bro and Smilde (2014) <DOI:10.1039/c3ay41907j>. Brereton (2016) <DOI:10.1002/cem.2763>.
Author: Christian L. Goueguel [aut, cre]
Maintainer: Christian L. Goueguel <christian.goueguel@gmail.com>

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Package globals updated to version 0.15.1 with previous version 0.15.0 dated 2022-05-09

Title: Identify Global Objects in R Expressions
Description: Identifies global ("unknown" or "free") objects in R expressions by code inspection using various strategies (ordered, liberal, or conservative). The objective of this package is to make it as simple as possible to identify global objects for the purpose of exporting them in parallel, distributed compute environments.
Author: Henrik Bengtsson [aut, cre, cph], Davis Vaughan [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

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Package caMST updated to version 0.1.6 with previous version 0.1.4 dated 2021-05-18

Title: Mixed Computerized Adaptive Multistage Testing
Description: Provides functions to more easily analyze computerized adaptive tests. Currently, functions for computerized adaptive tests (CAT), computer adaptive multistage tests (CMT), and mixed computer adaptive multistage tests (McaMST) utilizing CAT item-level adaptation for the initial stage and traditional MST module-level adaptation for the subsequent stages have been created, and a variation of Hybrid computer adaptive MST is planned as well. For an in-depth look at CAT and MST, see Weiss & Kingsbury (1984) <doi:10.1111/j.1745-3984.1984.tb01040.x> and Luecht & Nungester (2000) <doi:10.1007/0-306-47531-6_6> respectively.
Author: Anthony Raborn [aut, cre]
Maintainer: Anthony Raborn <anthony.w.raborn@gmail.com>

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Package rotations updated to version 1.6.4 with previous version 1.6.3 dated 2021-11-25

Title: Working with Rotation Data
Description: Tools for working with rotational data, including simulation from the most commonly used distributions on SO(3), methods for different Bayes, mean and median type estimators for the central orientation of a sample, confidence/credible regions for the central orientation based on those estimators and a novel visualization technique for rotation data. Most recently, functions to identify potentially discordant (outlying) values have been added. References: Bingham, Melissa A. and Nordman, Dan J. and Vardeman, Steve B. (2009), Bingham, Melissa A and Vardeman, Stephen B and Nordman, Daniel J (2009), Bingham, Melissa A and Nordman, Daniel J and Vardeman, Stephen B (2010), Leon, C.A. and Masse, J.C. and Rivest, L.P. (2006), Hartley, R and Aftab, K and Trumpf, J. (2011), Stanfill, Bryan and Genschel, Ulrike and Hofmann, Heike (2013), Maonton, Jonathan (2004), Mardia, KV and Jupp, PE (2000, ISBN:9780471953333), Rancourt, D. and Rivest, L.P. and Asselin, J. (2000), Chang, Ted and Rivest, Louis-Paul (2001), Fisher, Nicholas I. (1996, ISBN:0521568900).
Author: Bryan Stanfill [aut, cre], Heike Hofmann [aut], Ulrike Genschel [aut], Aymeric Stamm [ctb] , Luciano Selzer [ctb]
Maintainer: Bryan Stanfill <bstanfill2003@gmail.com>

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Package DemographicTable updated to version 0.1.5 with previous version 0.1.4 dated 2022-06-13

Title: Creating Demographic Table
Description: Functions for creating demographic table with simple summary statistics, with optional comparison(s) over one or more groups. Numeric variables are summarized in means, standard deviations, medians, inter-quartile-ranges (IQR), skewness, Shapiro-Wilk normality test and ranges, and compared using two-sample t-test, Wilcoxon test, ANOVA and/or Kruskal-Wallis test. Logical and factor variables are summarized in counts and percentages and compared using chi-squared test and/or Fisher's exact test.
Author: Tingting Zhan [aut, cre, cph]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>

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Package rsample updated to version 1.0.0 with previous version 0.1.1 dated 2021-11-08

Title: General Resampling Infrastructure
Description: Classes and functions to create and summarize different types of resampling objects (e.g. bootstrap, cross-validation).
Author: Julia Silge [aut, cre] , Fanny Chow [aut], Max Kuhn [aut], Hadley Wickham [aut], RStudio [cph, fnd]
Maintainer: Julia Silge <julia.silge@rstudio.com>

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Package pgTools updated to version 1.0.0 with previous version 0.1.0 dated 2021-01-25

Title: Functions for Generating PostgreSQL Statements/Scripts
Description: Create PostgreSQL statements/scripts from R, optionally executing the SQL statements. Common SQL operations are included, although not every configurable option is available at this time. SQL output is intended to be compliant with PostgreSQL syntax specifications. PostgreSQL documentation is available here <https://www.postgresql.org/docs/current/index.html>.
Author: Timothy Conwell
Maintainer: Timothy Conwell <timconwell@gmail.com>

Diff between pgTools versions 0.1.0 dated 2021-01-25 and 1.0.0 dated 2022-06-24

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Permanent link

Package kriging updated to version 1.2 with previous version 1.1 dated 2014-12-01

Title: Ordinary Kriging
Description: An implementation of a simple and highly optimized ordinary kriging algorithm to plot geographical data.
Author: Omar E. Olmedo
Maintainer: Omar E. Olmedo <omareolmedo@gmail.com>

Diff between kriging versions 1.1 dated 2014-12-01 and 1.2 dated 2022-06-24

 DESCRIPTION |    8 ++++----
 MD5         |    4 ++--
 NAMESPACE   |    3 +++
 3 files changed, 9 insertions(+), 6 deletions(-)

More information about kriging at CRAN
Permanent link

New package RGMM with initial version 0.1.0
Package: RGMM
Title: Robust Mixture Model
Version: 0.1.0
Description: Algorithms for estimating robustly the parameters of a Gaussian, Student, or Laplace Mixture Model.
License: GPL (>= 2)
Encoding: UTF-8
Imports: Rcpp, foreach, doParallel, mvtnorm,mclust,parallel,LaplacesDemon, genieclust, RSpectra
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2022-06-24 15:40:10 UTC; pug56
Author: Antoine Godichon-Baggioni [aut, cre, cph], Stephane Robin [aut]
Maintainer: Antoine Godichon-Baggioni <antoine.godichon_baggioni@upmc.fr>
Repository: CRAN
Date/Publication: 2022-06-24 17:00:12 UTC

More information about RGMM at CRAN
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Package lcmm updated to version 2.0.0 with previous version 1.9.5 dated 2022-01-31

Title: Extended Mixed Models Using Latent Classes and Latent Processes
Description: Estimation of various extensions of the mixed models including latent class mixed models, joint latent latent class mixed models, mixed models for curvilinear outcomes, mixed models for multivariate longitudinal outcomes using a maximum likelihood estimation method (Proust-Lima, Philipps, Liquet (2017) <doi:10.18637/jss.v078.i02>).
Author: Cecile Proust-Lima, Viviane Philipps, Amadou Diakite and Benoit Liquet
Maintainer: Cecile Proust-Lima <cecile.proust-lima@inserm.fr>

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New package h0 with initial version 1.0.0
Package: h0
Version: 1.0.0
Date: 2022-6-22
Title: A Meta Analysis for Estimating the Hubble Constant via Time Delay Cosmography
Author: Hyungsuk Tak
Maintainer: Hyungsuk Tak <hyungsuk.tak@gmail.com>
Depends: R (>= 2.2.0)
Description: We provide a toolbox to conduct a meta analysis for estimating the current expansion rate of the Universe, called the Hubble constant H0, via time delay cosmography. The input data are (i) estimates of Fermat potential differences and their one-sigma uncertainties (standard errors), and (ii) estimates of time delays and their one-sigma uncertainties. Given these inputs, the meta analysis conducts a maximum likelihood estimation or a Bayesian inference to infer the Hubble constant.
License: GPL-2
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2022-06-24 14:35:53 UTC; hyungsuktak
Repository: CRAN
Date/Publication: 2022-06-24 17:00:02 UTC

More information about h0 at CRAN
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Package eatGADS updated to version 0.20.0 with previous version 0.19.1 dated 2022-01-27

Title: Data Management of Large Hierarchical Data
Description: Import 'SPSS' data, handle and change 'SPSS' meta data, store and access large hierarchical data in 'SQLite' data bases.
Author: Benjamin Becker [aut, cre], Karoline Sachse [ctb], Johanna Busse [ctb]
Maintainer: Benjamin Becker <b.becker@iqb.hu-berlin.de>

Diff between eatGADS versions 0.19.1 dated 2022-01-27 and 0.20.0 dated 2022-06-24

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Package CSCDRNA updated to version 1.0.3 with previous version 1.0.2 dated 2022-05-20

Title: Covariance Based Single-Cell Decomposition of Bulk Expression Data
Description: Provides accurate cell type proportion estimation by incorporating covariance structure in both single-cell and bulk RNA-seq datasets into the analysis. For more detail, see Karimnezhad, A. (2022) <doi:10.1101/2022.05.13.491858>.
Author: Ali Karimnezhad [aut, cre, ctb]
Maintainer: Ali Karimnezhad <ali.karimnezhad@gmail.com>

Diff between CSCDRNA versions 1.0.2 dated 2022-05-20 and 1.0.3 dated 2022-06-24

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 5 files changed, 19 insertions(+), 13 deletions(-)

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New package attention with initial version 0.1.0
Package: attention
Title: Self-Attention Algorithm
Version: 0.1.0
Description: Self-Attention algorithm helper functions and demonstration vignettes of increasing depth on how to construct the Self-Attention algorithm, this is based on Dan Jurafsky and James H. Martin (2022, ISBN:978-0131873216) <https://web.stanford.edu/~jurafsky/slp3/> "Speech and Language Processing (3rd ed.)" and Alex Graves (2020) <https://www.youtube.com/watch?v=AIiwuClvH6k> "Attention and Memory in Deep Learning".
License: GPL (>= 3)
Encoding: UTF-8
Suggests: covr, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-06-24 09:13:18 UTC; bquast
Author: Bastiaan Quast [aut, cre]
Maintainer: Bastiaan Quast <bquast@gmail.com>
Repository: CRAN
Date/Publication: 2022-06-24 17:00:09 UTC

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New package visR with initial version 0.3.0
Package: visR
Title: Clinical Graphs and Tables Adhering to Graphical Principles
Version: 0.3.0
Description: To enable fit-for-purpose, reusable clinical and medical research focused visualizations and tables with sensible defaults and based on graphical principles as described in: "Vandemeulebroecke et al. (2018)" <doi:10.1002/pst.1912>, "Vandemeulebroecke et al. (2019)" <doi:10.1002/psp4.12455>, and "Morris et al. (2019)" <doi:10.1136/bmjopen-2019-030215>.
License: MIT + file LICENSE
URL: https://github.com/openpharma/visR
BugReports: https://github.com/openpharma/visR/issues
Depends: R (>= 3.5)
Imports: broom (>= 0.7.11), cowplot, dplyr (>= 1.0.0), ggplot2, gridExtra, gtable, kableExtra, rlang (>= 1.0.0), survival, tidyr (>= 1.0.0)
Suggests: covr, data.table, DT, forcats, gt (>= 0.3.0), knitr, learnr, lifecycle, rmarkdown, rsconnect, shiny, spelling, testthat (>= 2.1.0), tibble, tidycmprsk (>= 0.1.1), vdiffr
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
LazyData: true
NeedsCompilation: no
Packaged: 2022-06-24 14:42:58 UTC; BAILLMA3
Author: Mark Baillie [aut, cre, cph], Diego Saldana [aut], Charlotta Fruechtenicht [aut], Marc Vandemeulebroecke [aut], Thanos Siadimas [aut], Pawel Kawski [aut], Steven Haesendonckx [aut], James Black [aut], Pelagia Alexandra Papadopoulou [aut], Tim Treis [ [...truncated...]
Maintainer: Mark Baillie <bailliem@gmail.com>
Repository: CRAN
Date/Publication: 2022-06-24 16:00:02 UTC

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Package MedianaDesigner updated to version 0.8 with previous version 0.7 dated 2021-12-19

Title: Efficient Simulation-Based Power and Sample Size Calculations for a Broad Class of Late-Stage Clinical Trials
Description: The following modules are included in the package: Adaptive designs with data-driven sample size or event count re-estimation, Adaptive designs with data-driven treatment selection, Adaptive designs with data-driven population selection, Optimal selection of a futility stopping rule, Event prediction in event-driven trials, Adaptive trials with response-adaptive randomization (experimental module), Traditional trials with multiple objectives (experimental module). Traditional trials with cluster-randomized designs (experimental module).
Author: Alex Dmitrienko [aut, cre]
Maintainer: Alex Dmitrienko <admitrienko@mediana.us>

Diff between MedianaDesigner versions 0.7 dated 2021-12-19 and 0.8 dated 2022-06-24

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Package jagstargets updated to version 1.0.3 with previous version 1.0.2 dated 2022-05-03

Title: Targets for JAGS Workflows
Description: Bayesian data analysis usually incurs long runtimes and cumbersome custom code. A pipeline toolkit tailored to Bayesian statisticians, the 'jagstargets' R package is leverages 'targets' and 'R2jags' to ease this burden. 'jagstargets' makes it super easy to set up scalable JAGS pipelines that automatically parallelize the computation and skip expensive steps when the results are already up to date. Minimal custom code is required, and there is no need to manually configure branching, so usage is much easier than 'targets' alone. For the underlying methodology, please refer to the documentation of 'targets' <doi:10.21105/joss.02959> and 'JAGS' (Plummer 2003) <https://www.r-project.org/conferences/DSC-2003/Proceedings/Plummer.pdf>.
Author: William Michael Landau [aut, cre] , David Lawrence Miller [rev], Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>

Diff between jagstargets versions 1.0.2 dated 2022-05-03 and 1.0.3 dated 2022-06-24

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Package coronavirus updated to version 0.3.32 with previous version 0.3.31 dated 2021-10-15

Title: The 2019 Novel Coronavirus COVID-19 (2019-nCoV) Dataset
Description: Provides a daily summary of the Coronavirus (COVID-19) cases by state/province. Data source: Johns Hopkins University Center for Systems Science and Engineering (JHU CCSE) Coronavirus <https://systems.jhu.edu/research/public-health/ncov/>.
Author: Rami Krispin [aut, cre], Jarrett Byrnes [aut]
Maintainer: Rami Krispin <rami.krispin@gmail.com>

Diff between coronavirus versions 0.3.31 dated 2021-10-15 and 0.3.32 dated 2022-06-24

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Package statgenSTA updated to version 1.0.9 with previous version 1.0.8 dated 2021-05-25

Title: Single Trial Analysis (STA) of Field Trials
Description: Phenotypic analysis of field trials using mixed models with and without spatial components. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris. Some functions have been created to be used in conjunction with the R package 'asreml' for the 'ASReml' software, which can be obtained upon purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r>).
Author: Bart-Jan van Rossum [aut, cre] , Fred van Eeuwijk [ctb] , Martin Boer [ctb] , Marcos Malosetti [ctb] , Daniela Bustos-Korts [ctb] , Emilie J. Millet [ctb] , Joao Paulo [ctb] , Maikel Verouden [ctb] , Willem Kruijer [ctb] , Ron Wehrens [ctb] , Choazhi [...truncated...]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>

Diff between statgenSTA versions 1.0.8 dated 2021-05-25 and 1.0.9 dated 2022-06-24

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Package predint updated to version 1.1.1 with previous version 1.1.0 dated 2022-04-29

Title: Prediction Intervals
Description: An implementation of prediction intervals for overdispersed count data, for overdispersed binomial data and for linear random effects models.
Author: Max Menssen [aut, cre]
Maintainer: Max Menssen <menssen@cell.uni-hannover.de>

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Package devEMF updated to version 4.1 with previous version 4.0-2 dated 2020-10-01

Title: EMF Graphics Output Device
Description: Output graphics to EMF+/EMF.
Author: Philip Johnson
Maintainer: Philip Johnson <plfj@umd.edu>

Diff between devEMF versions 4.0-2 dated 2020-10-01 and 4.1 dated 2022-06-24

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Package DataSpaceR updated to version 0.7.6 with previous version 0.7.5 dated 2021-09-02

Title: Interface to 'the CAVD DataSpace'
Description: Provides a convenient API interface to access immunological data within 'the CAVD DataSpace'(<https://dataspace.cavd.org>), a data sharing and discovery tool that facilitates exploration of HIV immunological data from pre-clinical and clinical HIV vaccine studies.
Author: Ju Yeong Kim [aut], Sean Hughes [rev], Jason Taylor [aut, cre], Helen Miller [aut], CAVD DataSpace [cph]
Maintainer: Jason Taylor <jmtaylor@fredhutch.org>

Diff between DataSpaceR versions 0.7.5 dated 2021-09-02 and 0.7.6 dated 2022-06-24

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Package downlit updated to version 0.4.1 with previous version 0.4.0 dated 2021-10-29

Title: Syntax Highlighting and Automatic Linking
Description: Syntax highlighting of R code, specifically designed for the needs of 'RMarkdown' packages like 'pkgdown', 'hugodown', and 'bookdown'. It includes linking of function calls to their documentation on the web, and automatic translation of ANSI escapes in output to the equivalent HTML.
Author: Hadley Wickham [aut, cre], RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>

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Package rCMA updated to version 1.1.1 with previous version 1.1 dated 2015-04-30

Title: R-to-Java Interface for 'CMA-ES'
Description: Tool for providing access to the Java version 'CMAEvolutionStrategy' of Nikolaus Hansen. 'CMA-ES' is the Covariance Matrix Adaptation Evolution Strategy, see <https://www.lri.fr/~hansen/cmaes_inmatlab.html#java>.
Author: Wolfgang Konen <wolfgang.konen@fh-koeln.de>, Nikolaus Hansen <hansen .AT. lri.fr>
Maintainer: Wolfgang Konen <wolfgang.konen@fh-koeln.de>

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Package rChoiceDialogs updated to version 1.0.6.1 with previous version 1.0.6 dated 2014-09-11

Title: 'rChoiceDialogs' Collection
Description: Collection of portable choice dialog widgets.
Author: Alex Lisovich [aut, cre], Roger Day [aut], Sun Microsystems, Inc [cph]
Maintainer: Alex Lisovich <alex.lisovich@gmail.com>

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Package pmr updated to version 1.2.5.1 with previous version 1.2.5 dated 2015-05-14

Title: Probability Models for Ranking Data
Description: Descriptive statistics (mean rank, pairwise frequencies, and marginal matrix), Analytic Hierarchy Process models (with Saaty's and Koczkodaj's inconsistencies), probability models (Luce models, distance-based models, and rank-ordered logit models) and visualization with multidimensional preference analysis for ranking data are provided. Current, only complete rankings are supported by this package.
Author: Paul H. Lee and Philip L. H. Yu
Maintainer: Paul H. Lee <honglee@graduate.hku.hk>

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Package pedigree updated to version 1.4.1 with previous version 1.4 dated 2012-12-17

Title: Pedigree Functions
Description: Pedigree related functions.
Author: Albart Coster [aut, cre]
Maintainer: Albart Coster <albart@dairyconsult.nl>

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Package ncbit updated to version 2013.03.29.1 with previous version 2013.03.29 dated 2013-04-03

Title: Retrieve and Build NBCI Taxonomic Data
Description: Makes NCBI taxonomic data locally available and searchable as an R object.
Author: Jon Eastman
Maintainer: Jon Eastman <jonathan.eastman@gmail.com>

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Package lmf updated to version 1.2.1 with previous version 1.2 dated 2013-10-31

Title: Functions for Estimation and Inference of Selection in Age-Structured Populations
Description: Provides methods for estimation and statistical inference on directional and fluctuating selection in age-structured populations.
Author: Thomas Kvalnes
Maintainer: Thomas Kvalnes <thomas.kvalnes@ntnu.no>

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Package lingtypology updated to version 1.1.9 with previous version 1.1.8 dated 2021-12-10

Title: Linguistic Typology and Mapping
Description: Provides R with the Glottolog database <https://glottolog.org/> and some more abilities for purposes of linguistic mapping. The Glottolog database contains the catalogue of languages of the world. This package helps researchers to make a linguistic maps, using philosophy of the Cross-Linguistic Linked Data project <https://clld.org/>, which allows for while at the same time facilitating uniform access to the data across publications. A tutorial for this package is available on GitHub pages <https://docs.ropensci.org/lingtypology/> and package vignette. Maps created by this package can be used both for the investigation and linguistic teaching. In addition, package provides an ability to download data from typological databases such as WALS, AUTOTYP and some others and to create your own database website.
Author: George Moroz [aut, cre] , Kirill Koncha [ctb] , Mikhail Leonov [ctb], Anna Smirnova [ctb], Sasha Shakhnova [ctb]
Maintainer: George Moroz <agricolamz@gmail.com>

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Package GPareto updated to version 1.1.7 with previous version 1.1.6 dated 2021-05-31

Title: Gaussian Processes for Pareto Front Estimation and Optimization
Description: Gaussian process regression models, a.k.a. Kriging models, are applied to global multi-objective optimization of black-box functions. Multi-objective Expected Improvement and Step-wise Uncertainty Reduction sequential infill criteria are available. A quantification of uncertainty on Pareto fronts is provided using conditional simulations.
Author: Mickael Binois, Victor Picheny
Maintainer: Mickael Binois <mickael.binois@inria.fr>

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Package geoscale updated to version 2.0.1 with previous version 2.0 dated 2015-05-13

Title: Geological Time Scale Plotting
Description: Functionality for adding the geological timescale to bivariate plots.
Author: Mark A. Bell <mark.bell521@gmail.com>.
Maintainer: Mark A. Bell <mark.bell521@gmail.com>

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Package deepnet updated to version 0.2.1 with previous version 0.2 dated 2014-03-20

Title: Deep Learning Toolkit in R
Description: Implement some deep learning architectures and neural network algorithms, including BP,RBM,DBN,Deep autoencoder and so on.
Author: Xiao Rong
Maintainer: Xiao Rong <runxiao@gmail.com>

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Package cxxfunplus updated to version 1.0.1 with previous version 1.0 dated 2012-08-19

Title: Extend 'cxxfunction' by Saving the Dynamic Shared Objects
Description: Extend 'cxxfunction' by saving the dynamic shared objects for reusing across R sessions.
Author: Jiqiang Guo <guojq28@gmail.com>
Maintainer: Jiqiang Guo <guojq28@gmail.com>

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Package c3net updated to version 1.1.1.1 with previous version 1.1.1 dated 2011-03-01

Title: Inferring Large-Scale Gene Networks with C3NET
Description: Allows inferring gene regulatory networks with direct physical interactions from microarray expression data using C3NET.
Author: Gokmen Altay, Frank Emmert-Streib
Maintainer: Gokmen Altay <altayscience@gmail.com>

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Package additivityTests updated to version 1.1-4.1 with previous version 1.1-4 dated 2014-12-23

Title: Additivity Tests in the Two Way Anova with Single Sub-Class Numbers
Description: Implementation of the Tukey, Mandel, Johnson-Graybill, LBI, Tusell and modified Tukey non-additivity tests.
Author: Marie Simeckova [aut], Thomas Rusch [aut], Petr Simecek [cre]
Maintainer: Petr Simecek <simecek@gmail.com>

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Package mppa (with last version 1.0) was removed from CRAN

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2014-08-23 1.0

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2015-10-13 1.0-0

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2012-05-08 2.1.0
2010-04-05 1.2.0

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Package mapme.biodiversity updated to version 0.1.2 with previous version 0.1.1 dated 2022-05-02

Title: Efficient Monitoring of Global Biodiversity Portfolios
Description: Biodiversity areas, especially primary forest, serve a multitude of functions for local economy, regional functionality of the ecosystems as well as the global health of our planet. Recently, adverse changes in human land use practices and climatic responses to increased greenhouse gas emissions, put these biodiversity areas under a variety of different threats. The present package helps to analyse a number of biodiversity indicators based on freely available geographical datasets. It supports computational efficient routines that allow the analysis of potentially global biodiversity portfolios. The primary use case of the package is to support evidence based reporting of an organization's effort to protect biodiversity areas under threat and to identify regions were intervention is most duly needed.
Author: Darius A. Goergen [aut, cre], Om Prakash Bhandari [aut]
Maintainer: Darius A. Goergen <darius2402@web.de>

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Package huito updated to version 0.2.0 with previous version 0.1.4 dated 2022-05-26

Title: Flexible and Reproducible Label Designs
Description: An open-source R package to deploys flexible and reproducible labels using layers. The 'huito' package is part of the 'inkaverse' project for developing different procedures and tools used in plant science and experimental designs. Learn more about the 'inkaverse' project at <https://inkaverse.com/>.
Author: Flavio Lozano-Isla [aut, cre] , Inkaverse [cph]
Maintainer: Flavio Lozano-Isla <flavjack@gmail.com>

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 man/label_print.Rd     |   18 +-
 man/shape_hexagon.Rd   |   32 ++---
 vignettes/germinar.Rmd |   20 ---
 vignettes/labels.Rmd   |   17 +-
 vignettes/stickers.Rmd |   18 --
 25 files changed, 618 insertions(+), 582 deletions(-)

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New package SRTsim with initial version 0.99.2
Package: SRTsim
Title: Simulator for Spatially Resolved Transcriptomics
Version: 0.99.2
Date: 2022-06-13
Maintainer: Jiaqiang Zhu <jiaqiang@umich.edu>
Description: An independent, reproducible, and flexible Spatially Resolved Transcriptomics (SRT) simulation framework that can be used to facilitate the development of SRT analytical methods for a wide variety of SRT-specific analyses. It utilizes spatial localization information to simulate SRT expression count data in a reproducible and scalable fashion. Two major simulation schemes are implemented in 'SRTsim': reference-based and reference-free.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Imports: concaveman,sf,sp,spatstat.geom,parallel,pdist,MASS,S4Vectors,stats,Matrix,Morpho,matrixStats,plotly,shiny,viridis,shinydashboard,dashboardthemes,shinyBS, ggplot2, ggpubr, spatstat.random,magrittr
Suggests: knitr,rmarkdown,BiocStyle,RefManageR,BiocManager,sessioninfo
VignetteBuilder: knitr
Depends: R (>= 3.5.0), methods
NeedsCompilation: no
Packaged: 2022-06-23 19:13:10 UTC; jiaqiangzhu
Author: Jiaqiang Zhu [aut, ctb, cre] , Lulu Shang [aut] , Xiang Zhou [aut]
Repository: CRAN
Date/Publication: 2022-06-24 08:10:02 UTC

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New package sgsR with initial version 1.0.0
Package: sgsR
Version: 1.0.0
License: GPL (>= 3)
Title: Structurally Guided Sampling
Description: Structurally guided sampling (SGS) approaches for airborne laser scanning (ALS; LIDAR). Primary functions provide means to generate data-driven stratifications & methods for allocating samples. Intermediate functions for calculating and extracting important information about input covariates and samples are also included. Processing outcomes are intended to help forest and environmental management practitioners better optimize field sample placement as well as assess and augment existing sample networks in the context of data distributions and conditions. ALS data is the primary intended use case, however any rasterized remote sensing data can be used, enabling data-driven stratifications and sampling approaches.
URL: https://github.com/tgoodbody/sgsR, https://tgoodbody.github.io/sgsR/
BugReports: https://github.com/tgoodbody/sgsR/issues
Depends: R (>= 3.5.0), methods
Imports: dplyr, ggplot2, sf, terra, tidyr, clhs, SamplingBigData, BalancedSampling, spatstat.geom
Suggests: knitr, rmarkdown, Rfast, testthat (>= 3.0.0), doParallel, doSNOW, snow, foreach, entropy, roxygen2, covr
VignetteBuilder: knitr
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2022-06-23 20:00:07 UTC; tgood
Author: Tristan RH Goodbody [aut, cre, cph] , Nicholas C Coops [aut] , Martin Queinnec [aut]
Maintainer: Tristan RH Goodbody <goodbody.t@gmail.com>
Repository: CRAN
Date/Publication: 2022-06-24 08:20:02 UTC

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Package openeo updated to version 1.2.1 with previous version 1.2.0 dated 2022-05-10

Title: Client Interface for 'openEO' Servers
Description: Access data and processing functionalities of 'openEO' compliant back-ends in R.
Author: Florian Lahn [aut, cre], Peter James Zellner [ctb], Matthias Mohr [ctb]
Maintainer: Florian Lahn <florian.lahn@eftas.com>

Diff between openeo versions 1.2.0 dated 2022-05-10 and 1.2.1 dated 2022-06-24

 DESCRIPTION                           |    6 
 MD5                                   |   43 
 NAMESPACE                             |  530 +--
 NEWS.md                               |  550 +--
 R/argument_types.R                    | 6004 +++++++++++++++++-----------------
 R/authentication.R                    |    4 
 R/coerce-functions.R                  |    2 
 R/jobs.R                              | 1266 +++----
 R/ops.R                               | 1952 +++++------
 R/print-functions.R                   | 1300 +++----
 R/process_graph_building.R            | 2048 +++++------
 R/sample_data.R                       |    3 
 R/user.R                              |    1 
 R/user_defined_processes.R            |    3 
 R/utilities.R                         |  424 +-
 R/zzz.R                               |   38 
 inst/doc/getting_started.html         |  299 +
 inst/doc/sample_data.html             |  128 
 man/GeoJson.Rd                        |    7 
 man/OIDCAuth.Rd                       |    2 
 man/Parameter.Rd                      |  104 
 tests/testthat/test-argument-array.R  |only
 tests/testthat/test-geojson-as-list.R |   75 
 23 files changed, 7595 insertions(+), 7194 deletions(-)

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New package PFIM with initial version 5.0
Package: PFIM
Title: Population Fisher Information Matrix
Version: 5.0
Date: 2022-05-23
NeedsCompilation: no
Description: Evaluate or optimize designs for nonlinear mixed effects models using the Fisher Information matrix. Methods used in the package refer to Mentré F, Mallet A, Baccar D (1997) <doi:10.1093/biomet/84.2.429>, Retout S, Comets E, Samson A, Mentré F (2007) <doi:10.1002/sim.2910>, Bazzoli C, Retout S, Mentré F (2009) <doi:10.1002/sim.3573>, Le Nagard H, Chao L, Tenaillon O (2011) <doi:10.1186/1471-2148-11-326>, Combes FP, Retout S, Frey N, Mentré F (2013) <doi:10.1007/s11095-013-1079-3> and Seurat J, Tang Y, Mentré F, Nguyen TT (2021) <doi:10.1016/j.cmpb.2021.106126>.
Depends: R (>= 4.0.0)
License: GPL (>= 2)
Encoding: UTF-8
Imports: methods, rmarkdown, stats, scales, deSolve, kableExtra, gtable, Deriv, grid, knitr, markdown, Matrix, ggplot2, ggbreak, pracma, Rcpp, filesstrings
VignetteBuilder: knitr
Suggests: testthat, inline, utils, devtools, htmltools
Packaged: 2022-06-23 17:09:40 UTC; ADMIN Romain LEROUX
Author: France Mentre [aut] , Herve Le Nagard [aut], Romain Leroux [aut, cre], Jeremy Seurat [aut], Tran Bach Nguyen [ctb], Caroline Bazzoli [ctb], Emmanuelle Comets [ctb], Anne Dubois [ctb], Cyrielle Dumont [ctb], Giulia Lestini [ctb], Thi Huyen Tram Nguyen [...truncated...]
Maintainer: Romain Leroux <romain.leroux@inserm.fr>
Repository: CRAN
Date/Publication: 2022-06-24 08:10:05 UTC

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New package HDStIM with initial version 0.1.0
Package: HDStIM
Title: High Dimensional Stimulation Immune Mapping ('HDStIM')
Version: 0.1.0
Description: A method for identifying responses to experimental stimulation in mass or flow cytometry that uses high dimensional analysis of measured parameters and can be performed with an end-to-end unsupervised approach. In the context of in vitro stimulation assays where high-parameter cytometry was used to monitor intracellular response markers, using cell populations annotated either through automated clustering or manual gating for a combined set of stimulated and unstimulated samples, 'HDStIM' labels cells as responding or non-responding. The package also provides auxiliary functions to rank intracellular markers based on their contribution to identifying responses and generating diagnostic plots.
License: CC0 | file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
URL: https://github.com/niaid/HDStIM, https://niaid.github.io/HDStIM/
BugReports: https://github.com/niaid/HDStIM/issues
Depends: R (>= 3.6.0)
Imports: tibble, ggplot2, uwot, dplyr, tidyr, broom, tidyselect, ggridges, Boruta, scales
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr, rmarkdown
Language: en-US
NeedsCompilation: no
Packaged: 2022-06-23 18:04:20 UTC; farmerr2
Author: Rohit Farmer [aut, cre] , Richard Apps [aut] , John Tsang [aut, pdr]
Maintainer: Rohit Farmer <rohit.farmer@gmail.com>
Repository: CRAN
Date/Publication: 2022-06-24 08:10:12 UTC

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New package provSummarizeR with initial version 1.5
Package: provSummarizeR
Title: Summarizes Provenance Related to Inputs and Outputs of a Script or Console Commands
Version: 1.5
Date: 2022-06-23
Description: Reads the provenance collected by the 'rdtLite' or 'rdt' packages, or other tools providing compatible PROV JSON output, created by the execution of a script or a console session, and provides a human-readable summary identifying the input and output files, the script used (if any), errors and warnings produced, and the environment in which it was executed. It can also optionally package all the files into a zip file. The exact format of the JSON created by 'rdtLite' and 'rdt' is described in <https://github.com/End-to-end-provenance/ExtendedProvJson>. More information about 'rdtLite' and associated tools is available at <https://github.com/End-to-end-provenance/> and Barbara Lerner, Emery Boose, and Luis Perez (2018), Using Introspection to Collect Provenance in R, Informatics, <doi: 10.3390/informatics5010012>.
Depends: R (>= 3.5)
License: GPL-3
Encoding: UTF-8
Imports: provParseR (>= 0.3)
Suggests: digest, rdtLite, rdt, testthat
Additional_repositories: https://end-to-end-provenance.github.io/drat/
URL: https://github.com/End-to-end-provenance
BugReports: https://github.com/End-to-end-provenance/provSummarizeR/issues
NeedsCompilation: no
Packaged: 2022-06-23 19:37:47 UTC; erb709
Author: Emery Boose [cre], Barbara Lerner [aut], President and Fellows of Harvard College [cph], Trustees of Mount Holyoke College [cph]
Maintainer: Emery Boose <boose@fas.harvard.edu>
Repository: CRAN
Date/Publication: 2022-06-24 07:30:02 UTC

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New package IAPWS95 with initial version 1.2.0
Package: IAPWS95
Title: Thermophysical Properties of Water and Steam
Version: 1.2.0
Description: Functions for Water and Steam Properties based on the International Association for the Properties of Water (IAPWS) Formulation 1995 for the Thermodynamic Properties of Ordinary Water Substance for General and Scientific Use and on the releases for viscosity, conductivity, surface tension and melting pressure.
Depends: R (>= 3.5.0)
License: MIT + file LICENSE
LazyData: true
LinkingTo: Rcpp
Imports: ggplot2, pander, Rcpp
Encoding: UTF-8
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr,rmarkdown
NeedsCompilation: yes
Packaged: 2022-06-23 12:26:40 UTC; SWay
Repository: CRAN
Date/Publication: 2022-06-24 07:10:02 UTC
Author: Benedito Baptista [aut], Shawn Way [cre]
Maintainer: Shawn Way <shawnway@yahoo.com>

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New package ggtrace with initial version 0.2.0
Package: ggtrace
Title: Trace and Highlight Groups of Data Points
Version: 0.2.0
Description: Provides 'ggplot2' geoms that allow groups of data points to be outlined or highlighted for emphasis. This is particularly useful when working with dense datasets that are prone to overplotting.
License: MIT + file LICENSE
URL: https://github.com/rnabioco/ggtrace
BugReports: https://github.com/rnabioco/ggtrace/issues
Depends: R (>= 4.0.0)
Imports: ggplot2, grid, rlang
Suggests: covr, knitr, rmarkdown, tidyr, tibble, dplyr, testthat (>= 3.0.0), vdiffr (>= 1.0.0)
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
SystemRequirements: pandoc
Config/Needs/website: pkgdown, rnabioco/rbitemplate
NeedsCompilation: no
Packaged: 2022-06-23 18:38:51 UTC; rmsheridan
Author: Ryan Sheridan [aut, cre] , Rui Fu [ctb] , Jay Hesselberth [ctb] , RNA Bioscience Initiative [fnd, cph]
Maintainer: Ryan Sheridan <ryan.sheridan@cuanschutz.edu>
Repository: CRAN
Date/Publication: 2022-06-24 07:20:02 UTC

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New package CIMTx with initial version 1.2.0
Package: CIMTx
Title: Causal Inference for Multiple Treatments with a Binary Outcome
Version: 1.2.0
Description: Different methods to conduct causal inference for multiple treatments with a binary outcome, including regression adjustment, vector matching, Bayesian additive regression trees, targeted maximum likelihood and inverse probability of treatment weighting using different generalized propensity score models such as multinomial logistic regression, generalized boosted models and super learner. For more details, see the paper by Hu et al. <doi:10.1177/0962280220921909>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Imports: nnet (>= 7.3-16), BART (>= 2.9), twang (>= 2.5), arm (>= 1.2-12), dplyr (>= 1.0.7), Matching (>= 4.9-11), magrittr (>= 2.0.1), WeightIt (>= 0.12.0), tmle (>= 1.5.0.2), tidyr (>= 1.1.4), stats, ggplot2 (>= 3.3.5), cowplot (>= 1.1.1), mgcv (>= 1.8-38), metR (>= 0.11.0), stringr (>= 1.4.0), SuperLearner (>= 2.0-28), foreach (>= 1.5.1), doParallel (>= 1.0.16)
NeedsCompilation: no
Packaged: 2022-06-23 18:37:31 UTC; jiayi
Author: Liangyuan Hu [aut], Chenyang Gu [aut], Michael Lopez [aut], Jiayi Ji [aut, cre]
Maintainer: Jiayi Ji <jjy2876@gmail.com>
Repository: CRAN
Date/Publication: 2022-06-24 07:40:02 UTC

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Package catR updated to version 3.17 with previous version 3.16 dated 2018-07-28

Title: Generation of IRT Response Patterns under Computerized Adaptive Testing
Description: Provides routines for the generation of response patterns under unidimensional dichotomous and polytomous computerized adaptive testing (CAT) framework. It holds many standard functions to estimate ability, select the first item(s) to administer and optimally select the next item, as well as several stopping rules. Options to control for item exposure and content balancing are also available (Magis and Barrada (2017) <doi:10.18637/jss.v076.c01>).
Author: David Magis , Gilles Raiche , Juan Ramon Barrada
Maintainer: Cheng Hua <chuabest@gmail.com>

Diff between catR versions 3.16 dated 2018-07-28 and 3.17 dated 2022-06-24

 catR-3.16/catR/data/cat_pav.txt.gz        |only
 catR-3.16/catR/data/tcals.txt.gz          |only
 catR-3.17/catR/DESCRIPTION                |   17 
 catR-3.17/catR/MD5                        |   64 
 catR-3.17/catR/NEWS                       | 2185 +++++++++++++++---------------
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 catR-3.17/catR/man/EPV.Rd                 |    3 
 catR-3.17/catR/man/GDI.Rd                 |    3 
 catR-3.17/catR/man/Ii.Rd                  |    3 
 catR-3.17/catR/man/Ji.Rd                  |    3 
 catR-3.17/catR/man/KL.Rd                  |    3 
 catR-3.17/catR/man/MEI.Rd                 |    3 
 catR-3.17/catR/man/MWI.Rd                 |  335 ++--
 catR-3.17/catR/man/OIi.Rd                 |    3 
 catR-3.17/catR/man/Pi.Rd                  |    3 
 catR-3.17/catR/man/aStratified.Rd         |    3 
 catR-3.17/catR/man/breakBank.Rd           |    3 
 catR-3.17/catR/man/checkStopRule.Rd       |    3 
 catR-3.17/catR/man/eapEst.Rd              |    3 
 catR-3.17/catR/man/eapSem.Rd              |    5 
 catR-3.17/catR/man/fullDist.Rd            |    5 
 catR-3.17/catR/man/genDichoMatrix.Rd      |    3 
 catR-3.17/catR/man/genPattern.Rd          |    3 
 catR-3.17/catR/man/genPolyMatrix.Rd       |    3 
 catR-3.17/catR/man/integrate.catR.Rd      |    9 
 catR-3.17/catR/man/nextItem.Rd            |    5 
 catR-3.17/catR/man/randomCAT.Rd           |   15 
 catR-3.17/catR/man/semTheta.Rd            |    7 
 catR-3.17/catR/man/simulateRespondents.Rd |   16 
 catR-3.17/catR/man/startItems.Rd          |    5 
 catR-3.17/catR/man/test.cbList.Rd         |    3 
 catR-3.17/catR/man/testList.Rd            |    3 
 catR-3.17/catR/man/thetaEst.Rd            |    7 
 35 files changed, 1395 insertions(+), 1331 deletions(-)

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Package AdhereRViz updated to version 0.2.1 with previous version 0.2.0 dated 2021-09-19

Title: Adherence to Medications
Description: Interactive graphical user interface (GUI) for the package 'AdhereR', allowing the user to access different data sources, to explore the patterns of medication use therein, and the computation of various measures of adherence. It is implemented using Shiny and HTML/CSS/JavaScript.
Author: Dan Dediu [aut, cre], Alexandra Dima [aut], Samuel Allemann [aut]
Maintainer: Dan Dediu <ddediu@gmail.com>

Diff between AdhereRViz versions 0.2.0 dated 2021-09-19 and 0.2.1 dated 2022-06-24

 AdhereRViz-0.2.0/AdhereRViz/inst/interactivePlotShiny/www/AdhereR-logo.png                                   |only
 AdhereRViz-0.2.1/AdhereRViz/DESCRIPTION                                                                      |   19 
 AdhereRViz-0.2.1/AdhereRViz/MD5                                                                              |   32 
 AdhereRViz-0.2.1/AdhereRViz/NAMESPACE                                                                        |   86 
 AdhereRViz-0.2.1/AdhereRViz/R/adhererviz.R                                                                   |   26 
 AdhereRViz-0.2.1/AdhereRViz/build/vignette.rds                                                               |binary
 AdhereRViz-0.2.1/AdhereRViz/inst/CITATION                                                                    |   40 
 AdhereRViz-0.2.1/AdhereRViz/inst/doc/adherer_interctive_plots.R                                              |  272 
 AdhereRViz-0.2.1/AdhereRViz/inst/doc/adherer_interctive_plots.Rmd                                            | 1328 -
 AdhereRViz-0.2.1/AdhereRViz/inst/doc/adherer_interctive_plots.html                                           | 2573 +-
 AdhereRViz-0.2.1/AdhereRViz/inst/interactivePlotShiny/app.R                                                  |10484 +++++-----
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 AdhereRViz-0.2.1/AdhereRViz/inst/interactivePlotShiny/rsconnect/shinyapps.io/ddediu/interactiveplotshiny.dcf |   20 
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 AdhereRViz-0.2.1/AdhereRViz/man/plot_interactive_cma.Rd                                                      |  344 
 AdhereRViz-0.2.1/AdhereRViz/vignettes/adherer_interctive_plots.Rmd                                           | 1328 -
 18 files changed, 8806 insertions(+), 7936 deletions(-)

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Package ttservice updated to version 0.2.2 with previous version 0.1.2 dated 2021-10-12

Title: A Service for Tidy Transcriptomics Software Suite
Description: It provides generic methods that are used by more than one package, avoiding conflicts. This package will be imported by 'tidySingleCellExperiment' and 'tidyseurat'.
Author: Stefano Mangiola [aut, cre]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>

Diff between ttservice versions 0.1.2 dated 2021-10-12 and 0.2.2 dated 2022-06-24

 DESCRIPTION          |   13 +++--
 MD5                  |    9 ++--
 NAMESPACE            |   10 ++++
 R/methods.R          |  114 +++++++++++++++++++++++++++++++++++++++++++++++++--
 man/dplyr-methods.Rd |only
 man/join_features.Rd |    2 
 6 files changed, 132 insertions(+), 16 deletions(-)

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