Title: Computation of Optimal Transport Plans and Wasserstein Distances
Description: Solve optimal transport problems. Compute Wasserstein distances (a.k.a. Kantorovitch, Fortet--Mourier, Mallows, Earth Mover's, or minimal L_p distances), return the corresponding transference plans, and display them graphically. Objects that can be compared include grey-scale images, (weighted) point patterns, and mass vectors.
Author: Dominic Schuhmacher [aut, cre],
Bjoern Baehre [aut] ,
Nicolas Bonneel [aut] ,
Carsten Gottschlich [aut] ,
Valentin Hartmann [aut] ,
Florian Heinemann [aut] ,
Bernhard Schmitzer [aut] ,
Joern Schrieber [aut] ,
Timo Wilm [ctb]
Maintainer: Dominic Schuhmacher <dominic.schuhmacher@mathematik.uni-goettingen.de>
Diff between transport versions 0.12-2 dated 2020-03-11 and 0.12-4 dated 2022-08-12
DESCRIPTION | 8 ++--- MD5 | 21 ++++++++------- NAMESPACE | 2 - NEWS | 58 ++++++++++++++++++++++++++++++++++++++++++ R/fundament.R | 69 +++++++++++++++++++++++++++++++-------------------- R/lilhelpers.R | 39 +++++++++++++++++++--------- R/transport1d.R | 46 ++++++++++++++++++++++++---------- build |only man/semidiscrete.Rd | 2 - man/transport.Rd | 8 ++--- man/wasserstein1d.Rd | 2 - src/RcppExports.cpp | 5 +++ 12 files changed, 186 insertions(+), 74 deletions(-)
Title: Truncated Multivariate Normal and t Distribution Simulation
Description: Simulation of random vectors from truncated multivariate normal
and t distributions based on the algorithms proposed by Yifang Li and Sujit K. Ghosh (2015) <doi:10.1080/15598608.2014.996690>.
Author: Kaifeng Lu
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between tmvtnsim versions 0.1.1 dated 2022-02-15 and 0.1.2 dated 2022-08-12
DESCRIPTION | 13 +++-- MD5 | 20 ++++---- R/rtmvnorm.R | 15 ++++-- R/rtmvt.R | 13 ++++- R/rtnorm.R | 2 build/partial.rdb |binary man/rtmvnorm.Rd | 10 ++-- man/rtmvt.Rd | 10 ++-- man/rtnorm.Rd | 2 src/RcppExports.cpp | 8 +-- src/rtmvtnorm.cpp | 119 ++++++++++++++++++++++++++++++---------------------- 11 files changed, 124 insertions(+), 88 deletions(-)
Title: Regional Spatial Modeling with Continuous Borders
Description: Automatically creates separate regression models for different spatial
regions. The prediction surface is smoothed using a regional border smoothing
method. If regional models are continuous, the resulting prediction surface is
continuous across the spatial dimensions, even at region borders. Methodology
is described in Wagstaff (2021) <https://digitalcommons.usu.edu/etd/8065/>.
Author: Jadon Wagstaff [aut, cre],
Brennan Bean [aut]
Maintainer: Jadon Wagstaff <jadonw@gmail.com>
Diff between remap versions 0.2.1 dated 2021-04-16 and 0.3.0 dated 2022-08-12
DESCRIPTION | 8 MD5 | 36 NAMESPACE | 16 NEWS.md | 53 - R/data.R | 82 - R/redist.R | 576 ++++++------ R/remap.R | 903 ++++++++++--------- R/utils.R | 244 ++--- build/vignette.rds |binary inst/CITATION | 36 inst/doc/Introduction_to_remap.R | 584 ++++++------ inst/doc/Introduction_to_remap.Rmd | 955 ++++++++++---------- inst/doc/Introduction_to_remap.html | 1659 ++++++++++++++++++++---------------- man/predict.remap.Rd | 103 +- man/redist.Rd | 120 +- man/remap.Rd | 221 ++-- man/utsnow.Rd | 2 man/utws.Rd | 2 vignettes/Introduction_to_remap.Rmd | 955 ++++++++++---------- 19 files changed, 3412 insertions(+), 3143 deletions(-)
Title: Scalable Robust Estimators with High Breakdown Point
Description: Robust Location and Scatter Estimation and Robust
Multivariate Analysis with High Breakdown Point:
principal component analysis (Filzmoser and Todorov (2013), <doi:10.1016/j.ins.2012.10.017>),
linear and quadratic discriminant analysis (Todorov and Pires (2007)),
multivariate tests (Todorov and Filzmoser (2010) <doi:10.1016/j.csda.2009.08.015>),
outlier detection (Todorov et al. (2010) <doi:10.1007/s11634-010-0075-2>).
See also Todorov and Filzmoser (2009) <ISBN-13:978-3838108148>,
Todorov and Filzmoser (2010) <doi:10.18637/jss.v032.i03> and
Boudt et al. (2019) <doi:10.1007/s11222-019-09869-x>.
Author: Valentin Todorov [aut, cre]
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between rrcov versions 1.7-0 dated 2022-04-25 and 1.7-1 dated 2022-08-12
ChangeLog | 18 ++++++++++++++---- DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ R/CovMrcd.R | 3 ++- R/detmrcd.R | 24 ++++++++++++++++++++---- R/plot-utils.R | 5 ++++- data/octane.rda |binary inst/NEWS.Rd | 14 ++++++++++++++ inst/doc/rrcov.pdf |binary man/CovMrcd.Rd | 24 ++++++++++++++++++++++++ man/PcaHubert.Rd | 2 +- man/octane.Rd | 7 +++++-- src/ds11.f | 5 ++++- 13 files changed, 104 insertions(+), 30 deletions(-)
Title: Artificial Intelligence Systems and Observer Performance
Description: Analyzing the performance of artificial intelligence
(AI) systems/algorithms characterized by a 'search-and-report'
strategy. Historically observer performance has dealt with
measuring radiologists' performances in search tasks, e.g., searching
for lesions in medical images and reporting them, but the implicit
location information has been ignored. The implemented methods apply
to analyzing the absolute and relative performances of AI systems,
comparing AI performance to a group of human readers or optimizing the
reporting threshold of an AI system. In addition to performing historical
receiver operating receiver operating characteristic (ROC) analysis
(localization information ignored), the software also performs
free-response receiver operating characteristic (FROC)
analysis, where lesion localization information is used. A book
using the software has been published: Chakraborty DP: Observer
Performance Methods for Diagnostic Imaging - Foundations, Modeling,
and Applications with R-Based Examples, Taylor-Francis LLC; 2017:
<https://www.routledge.com/Observer-Performance-Methods-for-Diagnostic-Imaging-Foundations-Modeling/Chakraborty/p/book/9781482214840>.
Online updates to this book, which use the software, are at
<https://dpc10ster.github.io/RJafrocQuickStart/>,
<https://dpc10ster.github.io/RJafrocRocBook/> and at
<https://dpc10ster.github.io/RJafrocFrocBook/>. Supported data
collection paradigms are the ROC, FROC and the location ROC (LROC).
ROC data consists of single ratings per images, where a rating is
the perceived confidence level that the image is that of a diseased
patient. An ROC curve is a plot of true positive fraction vs. false
positive fraction. FROC data consists of a variable number (zero or
more) of mark-rating pairs per image, where a mark is the location
of a reported suspicious region and the rating is the confidence
level that it is a real lesion. LROC data consists of a rating and a
location of the most suspicious region, for every image. Four models
of observer performance, and curve-fitting software, are implemented:
the binormal model (BM), the contaminated binormal model (CBM), the
correlated contaminated binormal model (CORCBM), and the radiological
search model (RSM). Unlike the binormal model, CBM, CORCBM and RSM
predict 'proper' ROC curves that do not inappropriately cross the
chance diagonal. Additionally, RSM parameters are related to search
performance (not measured in conventional ROC analysis) and
classification performance. Search performance refers to finding
lesions, i.e., true positives, while simultaneously not finding false
positive locations. Classification performance measures the ability to
distinguish between true and false positive locations. Knowing these
separate performances allows principled optimization of reader or AI
system performance. This package supersedes Windows JAFROC (jackknife
alternative FROC) software V4.2.1,
<https://github.com/dpc10ster/WindowsJafroc>. Package functions are
organized as follows. Data file related function names are preceded
by 'Df', curve fitting functions by 'Fit', included data sets by 'dataset',
plotting functions by 'Plot', significance testing functions by 'St',
sample size related functions by 'Ss', data simulation functions by
'Simulate' and utility functions by 'Util'. Implemented are figures of
merit (FOMs) for quantifying performance and functions for visualizing
empirical or fitted operating characteristics: e.g., ROC, FROC, alternative
FROC (AFROC) and weighted AFROC (wAFROC) curves. For fully crossed study
designs significance testing of reader-averaged FOM differences between
modalities is implemented via either Dorfman-Berbaum-Metz or the
Obuchowski-Rockette methods. Also implemented is single treatment analysis,
which allows comparison of performance of a group of radiologists to a
specified value, or comparison of AI to a group of radiologists interpreting
the same cases. Crossed-modality analysis is implemented wherein there are
two crossed treatment factors and the aim is to determined performance in
each treatment factor averaged over all levels of the second factor. Sample
size estimation tools are provided for ROC and FROC studies; these use
estimates of the relevant variances from a pilot study to predict required
numbers of readers and cases in a pivotal study to achieve the desired power.
Utility and data file manipulation functions allow data to be read in any of
the currently used input formats, including Excel, and the results of the
analysis can be viewed in text or Excel output files. The methods are
illustrated with several included datasets from the author's collaborations.
This update includes improvements to the code, some as a result of
user-reported bugs and new feature requests, and others discovered during
ongoing testing and code simplification.
Author: Dev Chakraborty [cre, aut, cph],
Peter Phillips [ctb],
Xuetong Zhai [aut]
Maintainer: Dev Chakraborty <dpc10ster@gmail.com>
Diff between RJafroc versions 2.1.0 dated 2022-07-24 and 2.1.1 dated 2022-08-12
DESCRIPTION | 11 ++++++----- MD5 | 12 ++++++------ NEWS.md | 13 +++++++++---- R/FitCbmRoc.R | 16 ++++++++-------- inst/cranSubmission/cranSubmission.R | 19 ++++++++++--------- man/FitCbmRoc.Rd | 16 ++++++++-------- man/RJafroc-package.Rd | 7 ++++--- 7 files changed, 51 insertions(+), 43 deletions(-)
Title: Kriging Method for Spatial Functional Data
Description: A Kriging method for functional datasets with spatial dependency.
This functional Kriging method avoids the need to estimate the
trace-variogram, and the curve is estimated by minimizing a quadratic
form. The curves in the functional dataset are smoothed using Fourier
series. The functional Kriging of this package is a modification of the
method proposed by Giraldo (2011) <doi:10.1007/s10651-010-0143-y>.
Author: Gilberto Sassi [aut, cre]
Maintainer: Gilberto Sassi <sassi.pereira.gilberto@gmail.com>
Diff between geoFKF versions 0.1.0 dated 2020-11-02 and 0.1.1 dated 2022-08-12
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/kriging.R | 2 +- man/geo_fkf.Rd | 2 +- src/RcppExports.cpp | 5 +++++ 5 files changed, 16 insertions(+), 11 deletions(-)
Title: Easy Plotting of Periodic Data with 'ggplot2'
Description: Implements methods to plot periodic data in any arbitrary range on the fly.
Author: Elio Campitelli [cre, aut]
Maintainer: Elio Campitelli <elio.campitelli@cima.fcen.uba.ar>
Diff between ggperiodic versions 1.0.1 dated 2020-12-08 and 1.0.2 dated 2022-08-12
DESCRIPTION | 9 - MD5 | 10 - NEWS.md | 4 build/vignette.rds |binary inst/doc/wraping-around-ggplot2.html | 208 ++++++++++++++++------------------- man/ggperiodic.Rd | 2 6 files changed, 111 insertions(+), 122 deletions(-)
Title: Wrapper for 'Visa Chart Components'
Description: Provides a set of wrapper functions for 'Visa Chart Components'.
'Visa Chart Components' <https://github.com/visa/visa-chart-components> is an accessibility focused,
framework agnostic set of data experience design systems components for the web.
Author: Christopher DeMartini [aut, cre],
Jaime Tanner [aut],
Stephanie Modica [aut],
Frank Elavsky [aut],
Wojtek Kostelecki [ctb],
Visa Data Experience Team [aut, fnd],
Visa, Inc. [cph]
Maintainer: Christopher DeMartini <chris.demartini.npm@gmail.com>
Diff between visachartR versions 2.1.1 dated 2022-07-09 and 2.1.2 dated 2022-08-12
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 8 +++++++- inst/htmlwidgets/visaChart.yaml | 2 +- inst/htmlwidgets/visaNodeLinkChart.yaml | 2 +- 5 files changed, 17 insertions(+), 11 deletions(-)
Title: Dynamically Pluralize Phrases
Description: Converts English phrases to singular or plural form based on
the length of an associated vector. Contains helper functions to
create natural language lists from vectors and to include the length
of a vector in natural language.
Author: Alexander Rossell Hayes [aut, cre, cph]
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between plu versions 0.2.2 dated 2022-06-07 and 0.2.3 dated 2022-08-12
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NEWS.md | 6 ++++++ R/plu_stick.R | 2 +- build/plu.pdf |binary inst/staticexports |only man/plu-package.Rd | 7 ++----- man/plu_stick.Rd | 2 +- 8 files changed, 21 insertions(+), 17 deletions(-)
Title: Convert Values to NA
Description: Provides a replacement for dplyr::na_if(). Allows you to
specify multiple values to be replaced with NA using a single
function.
Author: Alexander Rossell Hayes [aut, cre, cph]
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between fauxnaif versions 0.7.0 dated 2022-04-28 and 0.7.1 dated 2022-08-12
DESCRIPTION | 8 - MD5 | 8 - NEWS.md | 4 inst/doc/fauxnaif.html | 250 ++++++++++++++++++++++++------------------------ man/fauxnaif-package.Rd | 2 5 files changed, 139 insertions(+), 133 deletions(-)
Title: Exploratory Graph Analysis – a Framework for Estimating the
Number of Dimensions in Multivariate Data using Network
Psychometrics
Description: Implements the Exploratory Graph Analysis (EGA) framework for dimensionality and psychometric assessment. EGA is part of a new area called network psychometrics that uses undirected network models for the assessment of psychometric properties. EGA estimates the number of dimensions (or factors) using graphical lasso or Triangulated Maximally Filtered Graph (TMFG) and a weighted network community detection algorithm. A bootstrap method for verifying the stability of the dimensions and items in those dimensions is available. The fit of the structure suggested by EGA can be verified using Entropy Fit Indices. A novel approach called Unique Variable Analysis (UVA) can be used to identify and reduce redundant variables in multivariate data. Network loadings, which are roughly equivalent to factor loadings when the data generating model is a factor model, are available. Network scores can also be computed using the network loadings. Dynamic EGA (dynEGA) will estimate dimensions from time series data for individual, group, and sample levels. Golino, H., & Epskamp, S. (2017) <doi:10.1371/journal.pone.0174035>. Golino, H., Shi, D., Christensen, A. P., Garrido, L. E., Nieto, M. D., Sadana, R., & Thiyagarajan, J. A. (2020) <doi:10.31234/osf.io/gzcre>. Christensen, A. P., & Golino, H. (under review) <doi:10.31234/osf.io/hz89e>. Golino, H., Moulder, R. G., Shi, D., Christensen, A. P., Garrido, L. E., Nieto, M. D., Nesselroade, J., Sadana, R., Thiyagarajan, J. A., & Boker, S. M. (2020) <doi:10.31234/osf.io/mtka2>. Christensen, A. P. & Golino, H. (2021) <doi:10.3390/psych3030032>. Christensen, A. P., Garrido, L. E., & Golino, H. (under review) <doi:10.31234/osf.io/4kra2>. Golino, H., Christensen, A. P., Moulder, R. G., Kim, S., & Boker, S. M. (under review) <doi:10.31234/osf.io/tfs7c>.
Author: Hudson Golino [aut, cre] ,
Alexander Christensen [aut] ,
Robert Moulder [ctb] ,
Luis E. Garrido [ctb] ,
Laura Jamison [ctb]
Maintainer: Hudson Golino <hfg9s@virginia.edu>
Diff between EGAnet versions 1.1.0 dated 2022-05-10 and 1.2.0 dated 2022-08-12
DESCRIPTION | 25 MD5 | 134 + NAMESPACE | 19 NEWS | 39 R/CFA.R | 57 R/EBICglasso.qgraph.R | 58 R/EGA.R | 714 +++------- R/EGA.estimate.R | 484 +++--- R/EGA.fit.R | 19 R/LCT.R | 71 - R/UVA.R | 21 R/boot.ergoInfo.R | 501 +++---- R/bootEGA.R | 602 ++++++-- R/color_palette_EGA.R | 18 R/compare.EGA.plots.R | 59 R/convert2igraph.R |only R/dimensionStability.R | 91 - R/dynEGA.R | 365 +++-- R/dynEGA.ind.pop.R |only R/entropyFit.R | 15 R/ergoInfo.R | 528 +++++-- R/globals.R |only R/hierEGA.R | 611 +++++--- R/infoCluster.R |only R/invariance.R | 10 R/itemStability.R | 172 +- R/jsd.R |only R/louvain.R | 15 R/methods.R | 2119 ++++++++++++++++++++--------- R/net.loads.R | 100 - R/net.scores.R | 15 R/network.descriptives.R | 13 R/plots.R | 1136 ++++++++-------- R/prints.R | 437 +++++- R/residualEGA.R | 14 R/riEGA.R | 134 + R/summarys.R | 547 ++++++- R/utils-EGAnet.R | 2196 ++++++++++++++++++++----------- R/utils-EGAnet.methods.section.R | 312 ++-- R/vn.entropy.R | 19 inst/CITATION | 6 inst/doc/Exploratory_Graph_Analysis.Rmd | 3 inst/doc/Exploratory_Graph_Analysis.html | 7 man/CFA.Rd | 36 man/EBICglasso.qgraph.Rd | 42 man/EGA.Rd | 157 +- man/EGA.estimate.Rd | 100 - man/EGA.fit.Rd | 19 man/UVA.Rd | 15 man/boot.ergoInfo.Rd | 197 -- man/bootEGA.Rd | 175 +- man/compare.EGA.plots.Rd | 35 man/convert2igraph.Rd |only man/dimensionStability.Rd | 35 man/dynEGA.Rd | 63 man/dynEGA.ind.pop.Rd | 44 man/entropyFit.Rd | 11 man/ergoInfo.Rd | 39 man/hierEGA.Rd | 81 - man/infoCluster.Rd |only man/invariance.Rd | 8 man/itemStability.Rd | 88 - man/jsd.Rd |only man/net.loads.Rd | 28 man/net.scores.Rd | 15 man/network.descriptives.Rd | 8 man/plots.Rd | 40 man/residualEGA.Rd | 8 man/riEGA.Rd | 71 - man/summarys.Rd | 22 man/vn.entropy.Rd | 17 vignettes/Exploratory_Graph_Analysis.Rmd | 3 72 files changed, 8157 insertions(+), 4886 deletions(-)
Title: Apply Functions to All Combinations of List Elements
Description: Provides an extension to the 'purrr' family of mapping
functions to apply a function to each combination of elements in a
list of inputs. Also includes functions for automatically detecting
output type in mapping functions, finding every combination of
elements of lists or rows of data frames, and applying multiple models
to multiple subsets of a dataset.
Author: Alexander Rossell Hayes [aut, cre, cph]
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between crossmap versions 0.3.0 dated 2021-04-02 and 0.3.3 dated 2022-08-12
DESCRIPTION | 14 - MD5 | 57 +++--- NAMESPACE | 4 NEWS.md | 29 +++ R/cross_fit.R | 29 ++- R/cross_fit_glm.R | 44 +--- R/cross_fit_internal.R | 61 +++--- R/cross_fit_internal_internal.R |only R/cross_fit_robust.R |only R/errors.R | 182 +++++++------------- R/future_map_vec.R | 32 ++- R/future_xmap.R | 7 R/map_vec.R | 21 +- R/onLoad.R | 3 R/tidy_glance.R | 25 +- R/vectorize.R | 22 +- README.md | 351 +++++++++++++++++++-------------------- man/cross_fit.Rd | 25 ++ man/cross_fit_glm.Rd | 16 + man/cross_fit_robust.Rd |only man/crossmap-package.Rd | 9 - man/future_map_vec.Rd | 22 ++ man/future_xmap.Rd | 17 + man/future_xmap_mat.Rd | 15 + man/map_vec.Rd | 12 - man/tidy_glance.Rd | 19 +- tests/testthat/test-cross_fit.R | 47 ++++- tests/testthat/test-cross_join.R | 20 +- tests/testthat/test-errors.R | 13 - tests/testthat/test-map_vec.R | 23 ++ tests/testthat/test-xmap_mat.R | 6 31 files changed, 620 insertions(+), 505 deletions(-)
Title: Bayesian Power Prior Design
Description: Bayesian power/type I error calculation and model fitting using
the power prior and the normalized power prior for generalized linear models.
Detailed examples of applying the package are available at <arXiv:2112.14616>.
The Bayesian clinical trial design methodology is described in Chen et al. (2011)
<doi:10.1111/j.1541-0420.2011.01561.x>, and Psioda and Ibrahim (2019)
<doi:10.1093/biostatistics/kxy009>. The normalized power prior is described in Duan et al. (2006)
<doi:10.1002/env.752> and Ibrahim et al. (2015) <doi:10.1002/sim.6728>.
Author: Yueqi Shen [aut, cre],
Matthew A. Psioda [aut],
Joseph G. Ibrahim [aut]
Maintainer: Yueqi Shen <ys137@live.unc.edu>
Diff between BayesPPD versions 1.0.6 dated 2022-04-23 and 1.0.7 dated 2022-08-12
DESCRIPTION | 8 ++--- MD5 | 28 +++++++++--------- R/BayesPPD-package.R | 6 +-- R/RcppExports.R | 28 +++++++++--------- R/main_func.R | 29 +++++++++--------- man/BayesPPD-package.Rd | 4 +- man/power.glm.fixed.a0.Rd | 3 + man/power.glm.random.a0.Rd | 3 + man/power.two.grp.fixed.a0.Rd | 3 + man/power.two.grp.random.a0.Rd | 3 + src/PP_fixed.cpp | 54 ++++++++++++++++++++++------------- src/PP_fixed_glm.cpp | 35 +++++++++++++++------- src/PP_random.cpp | 39 ++++++++++++++++++++----- src/PP_random_glm.cpp | 9 ++++- src/RcppExports.cpp | 63 ++++++++++++++++++++++------------------- 15 files changed, 196 insertions(+), 119 deletions(-)
Title: Mail Sender Using 'Sendgrid' Service
Description: Send email using 'Sendgrid' <https://sendgrid.com/>
mail API(v3) <https://docs.sendgrid.com/api-reference/how-to-use-the-sendgrid-v3-api/authentication>.
Author: Chanyub Park [aut, cre]
Maintainer: Chanyub Park <mrchypark@gmail.com>
Diff between sendgridr versions 0.4.3 dated 2021-12-19 and 0.5.1 dated 2022-08-12
DESCRIPTION | 18 - MD5 | 34 +-- NAMESPACE | 77 +++----- NEWS.md | 12 + R/auth.R | 148 +++++---------- R/dynamic-templates.R | 218 +++++++++++------------ R/embed_rmd.R | 102 +++++----- R/helpers.R | 24 +- R/print.R | 274 ++++++++++++++--------------- R/send.R | 102 +++++----- R/sendgridr-package.R | 16 - R/set_mail.R | 444 +++++++++++++++++++++++------------------------ README.md | 86 +++------ man/attachments.Rd | 58 +++--- man/auth_check.Rd | 4 man/auth_set.Rd | 7 man/embed_rmd.Rd | 2 man/sendgridr-package.Rd | 4 18 files changed, 788 insertions(+), 842 deletions(-)
Title: Gentle Language Installer for R User
Description: Provides install functions of other languages
such as 'java', 'python'.
Author: Chanyub Park [aut, cre]
Maintainer: Chanyub Park <mrchypark@gmail.com>
Diff between multilinguer versions 0.2.2 dated 2022-03-09 and 0.2.4 dated 2022-08-12
multilinguer-0.2.2/multilinguer/R/zzz.R |only multilinguer-0.2.4/multilinguer/DESCRIPTION | 19 - multilinguer-0.2.4/multilinguer/MD5 | 33 - multilinguer-0.2.4/multilinguer/NAMESPACE | 37 +- multilinguer-0.2.4/multilinguer/NEWS.md | 10 multilinguer-0.2.4/multilinguer/R/jdk_install.R | 26 + multilinguer-0.2.4/multilinguer/R/jdk_set.R | 76 ++-- multilinguer-0.2.4/multilinguer/R/jdk_unc.R | 26 - multilinguer-0.2.4/multilinguer/R/jdk_utils.R | 44 +- multilinguer-0.2.4/multilinguer/R/sysdata.rda |binary multilinguer-0.2.4/multilinguer/R/utils.R | 210 +++++------- multilinguer-0.2.4/multilinguer/README.md | 35 -- multilinguer-0.2.4/multilinguer/inst/jdk.yaml | 60 +-- multilinguer-0.2.4/multilinguer/man/install_jdk.Rd | 111 +++--- multilinguer-0.2.4/multilinguer/man/java_available.Rd | 34 - multilinguer-0.2.4/multilinguer/man/jdk_path.Rd | 52 +- multilinguer-0.2.4/multilinguer/man/multilinguer-package.Rd | 50 +- multilinguer-0.2.4/multilinguer/man/remove_jdk.Rd | 66 +-- 18 files changed, 440 insertions(+), 449 deletions(-)
Title: Trajectories and Phylogenies Simulator
Description: Generates stochastic time series and genealogies associated with a population dynamics model. Times series are simulated using the Gillespie exact and approximate algorithms and a new algorithm we introduce that uses both approaches to optimize the time execution of the simulations. Genealogies are simulated from a trajectory using a backwards-in-time based approach. Methods are described in Danesh G et al (2020) <doi:10.1101/2020.11.09.373795>.
Author: Gonche Danesh [aut, cre, cph],
Emma Saulnier [aut, cph],
Olivier Gascuel [aut, cph],
Marc Choisy [aut, cph, ths],
Samuel Alizon [aut, cph, ths]
Maintainer: Gonche Danesh <gonche.danesh@gmail.com>
Diff between TiPS versions 1.1.1 dated 2022-02-01 and 1.2.0 dated 2022-08-12
DESCRIPTION | 13 - MD5 | 36 +-- R/generator.R | 564 ++++++++++++++++++++++++++++------------------- R/treeSimulator.R | 139 ++++++----- inst/doc/TiPS.R | 46 +++ inst/doc/TiPS.Rmd | 66 ++++- inst/doc/TiPS.html | 137 +++++++---- inst/extdata/sir_det.rda |only inst/include/Phyloepid.h | 10 man/build_simulator.Rd | 25 -- man/plot.simutraj.Rd | 9 man/simulate_tree.Rd | 58 ++++ src/Makevars | 1 src/Node.cpp | 10 src/Phyloepid.cpp | 50 ++-- src/RcppExports.cpp | 5 src/Reaction.cpp | 7 tests |only vignettes/TiPS.Rmd | 66 ++++- 19 files changed, 806 insertions(+), 436 deletions(-)
Title: Markov Chain Monte Carlo for Potts Models
Description: Do Markov chain Monte Carlo (MCMC) simulation of Potts models
(Potts, 1952, <doi:10.1017/S0305004100027419>),
which are the multi-color generalization of Ising models
(so, as as special case, also simulates Ising models).
Use the Swendsen-Wang algorithm (Swendsen and Wang, 1987,
<doi:10.1103/PhysRevLett.58.86>) so MCMC is fast.
Do maximum composite likelihood estimation of parameters
(Besag, 1975, <doi:10.2307/2987782>,
Lindsay, 1988, <doi:10.1090/conm/080>).
Author: Charles J. Geyer <charlie@stat.umn.edu> and Leif Johnson
<ltjohnson@google.com>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>
Diff between potts versions 0.5-9 dated 2020-03-23 and 0.5-11 dated 2022-08-12
ChangeLog | 2 ++ DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- build/vignette.rds |binary inst/doc/cll.R | 1 - inst/doc/cll.pdf |binary man/cachet.Rd | 2 +- man/calct.Rd | 2 +- tests/debug-cond.Rout.save | 10 +++++----- tests/debug-free.Rout.save | 10 +++++----- tests/debug.Rout.save | 10 +++++----- 11 files changed, 34 insertions(+), 33 deletions(-)
Title: Blazing Fast Morphological Analyzer Based on Kiwi(Korean
Intelligent Word Identifier)
Description: This is the R wrapper package Kiwi(Korean Intelligent Word Identifier),
a blazing fast speed morphological analyzer for Korean.
It supports configuration of user dictionary and detection of
unregistered nouns based on frequency.
Author: Chanyub Park [aut, cre]
Maintainer: Chanyub Park <mrchypark@gmail.com>
Diff between elbird versions 0.2.3 dated 2022-04-19 and 0.2.5 dated 2022-08-12
elbird-0.2.3/elbird/man/figures/moa.png |only elbird-0.2.5/elbird/DESCRIPTION | 16 - elbird-0.2.5/elbird/MD5 | 31 +-- elbird-0.2.5/elbird/NEWS.md | 8 elbird-0.2.5/elbird/R/analyze.R | 62 +++---- elbird-0.2.5/elbird/R/cpp11.R | 154 +++++++++---------- elbird-0.2.5/elbird/README.md | 134 ++++++++-------- elbird-0.2.5/elbird/man/Kiwi.Rd | 72 ++++---- elbird-0.2.5/elbird/man/Stopwords.Rd | 48 ++--- elbird-0.2.5/elbird/man/elbird-package.Rd | 2 elbird-0.2.5/elbird/man/figures/elephant.png |only elbird-0.2.5/elbird/man/figures/logo.png |binary elbird-0.2.5/elbird/man/figures/wings.png |only elbird-0.2.5/elbird/tests/testthat/test-addrule.R | 36 ++-- elbird-0.2.5/elbird/tests/testthat/test-kiwi.R | 12 - elbird-0.2.5/elbird/tests/testthat/test-preanalyze.R | 54 +++--- elbird-0.2.5/elbird/tests/testthat/test-splitsents.R | 22 +- elbird-0.2.5/elbird/tools/winlibs.R | 18 +- 18 files changed, 338 insertions(+), 331 deletions(-)
Title: Query 'nycflights13'-Like Air Travel Data for Given Years and
Airports
Description: Supplies a set of functions to query air travel data for user-
specified years and airports. Datasets include on-time flights, airlines,
airports, planes, and weather.
Author: Simon P. Couch [aut, cre],
Hadley Wickham [ctb],
Jay Lee [ctb],
Dennis Irorere [ctb]
Maintainer: Simon P. Couch <simonpatrickcouch@gmail.com>
Diff between anyflights versions 0.3.2 dated 2021-11-24 and 0.3.3 dated 2022-08-12
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/anyflights_description.R | 2 -- R/get_planes.R | 2 +- R/utils.R | 8 +++++--- README.md | 6 +++--- man/anyflights_description.Rd | 2 -- man/get_planes.Rd | 2 +- 9 files changed, 26 insertions(+), 24 deletions(-)
Title: Visualization using Graph Traversal
Description: Improving graphics by ameliorating order effects, using Eulerian tours
and Hamiltonian decompositions of graphs. References for the methods presented
here are C.B. Hurley and R.W. Oldford (2010) <doi:10.1198/jcgs.2010.09136> and
C.B. Hurley and R.W. Oldford (2011) <doi:10.1007/s00180-011-0229-5>.
Author: C.B. Hurley and R.W. Oldford
Maintainer: Catherine Hurley <catherine.hurley@mu.ie>
Diff between PairViz versions 1.3.5 dated 2022-01-12 and 1.3.6 dated 2022-08-12
DESCRIPTION | 10 MD5 | 14 - build/vignette.rds |binary inst/doc/MultipleComparisons.html | 395 ++++++++++++++++++++++++++++++---- inst/doc/PairVizIntroduction.html | 434 +++++++++++++++++++++++++++++++++----- inst/doc/pcp.html | 370 ++++++++++++++++++++++++++++---- man/eseq.Rd | 4 man/specialg.Rd | 2 8 files changed, 1067 insertions(+), 162 deletions(-)
More information about MeshesOperations at CRAN
Permanent link
Title: Download and Visualize Essential Climate Change Data
Description: Provides easy access to essential climate change datasets to non-climate experts. Users can download the latest raw data from authoritative sources and view it via pre-defined 'ggplot2' charts. Datasets include atmospheric CO2, emissions, instrumental and proxy temperature records, sea levels, Arctic/Antarctic sea-ice, Hurricanes, and Paleoclimate data. Sources include: NOAA Mauna Loa Laboratory <https://gml.noaa.gov/ccgg/trends/data.html>, Global Carbon Project <https://www.globalcarbonproject.org/carbonbudget/>, NASA GISTEMP <https://data.giss.nasa.gov/gistemp/>, National Snow and Sea Ice Data Center <https://nsidc.org/>, CSIRO <https://research.csiro.au/slrwavescoast/sea-level/measurements-and-data/sea-level-data/>, NOAA Laboratory for Satellite Altimetry <https://www.star.nesdis.noaa.gov/socd/lsa/SeaLevelRise/> and HURDAT Atlantic Hurricane Database <https://www.aoml.noaa.gov/hrd/hurdat/Data_Storm.html>, Vostok Paleo carbon dioxide and temperature data: <https://cdiac.ess-dive.lbl.gov/trends/co2/vostok.html>.
Author: Hernando Cortina [aut, cre]
Maintainer: Hernando Cortina <hch@alum.mit.edu>
Diff between hockeystick versions 0.6.1 dated 2021-09-20 and 0.6.2 dated 2022-08-12
DESCRIPTION | 10 MD5 | 64 ++-- NAMESPACE | 108 ++++---- NEWS.md | 90 +++--- R/2kyears_temp.R | 6 R/emissions.R | 268 ++++++++++---------- R/extra_viz.R | 250 +++++++++--------- R/globalvars.R | 6 R/icecurves.R | 296 +++++++++++----------- R/seaice.R | 270 ++++++++++---------- R/zzz.R | 10 README.md | 478 ++++++++++++++++++------------------ build/partial.rdb |binary man/figures/README-carbon-1.png |binary man/figures/README-emissions-1.png |binary man/figures/README-grid-1.png |binary man/figures/README-hurricanes-1.png |binary man/figures/README-hurricanes-2.png |binary man/figures/README-icecurves-1.png |binary man/figures/README-si-1.png |binary man/figures/README-sl-1.png |binary man/figures/README-stripes-1.png |binary man/figures/README-stripes2-1.png |binary man/figures/README-temp-1.png |binary man/get_carbon.Rd | 98 +++---- man/get_emissions.Rd | 96 +++---- man/get_icecurves.Rd | 8 man/get_seaice.Rd | 8 man/get_sealevel.Rd | 112 ++++---- man/get_temp2k.Rd | 4 man/hockeystick-package.Rd | 52 +-- man/plot_carbon.Rd | 86 +++--- man/plot_emissions.Rd | 136 +++++----- 33 files changed, 1230 insertions(+), 1226 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-28 2.0.0
2021-06-01 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-23 0.1-2
2016-10-29 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-01 0.7.2
2021-09-21 0.7.1
2021-03-12 0.6.1
2020-06-07 0.5.9
2020-03-17 0.5.7
2020-03-13 0.5.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-06 2.7.6
2017-04-29 2.7.5
2017-01-30 2.7.1
2015-09-03 2.5.10
2015-06-08 2.5.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-17 0.1-2
2015-12-16 0.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-25 1.0.1
2018-04-23 1.0.0
Title: Robust Methods for High-Dimensional Data
Description: Robust methods for high-dimensional data, in particular linear
model selection techniques based on least angle regression and sparse
regression.
Author: Andreas Alfons [aut, cre]
Maintainer: Andreas Alfons <alfons@ese.eur.nl>
Diff between robustHD versions 0.7.2 dated 2021-11-23 and 0.7.3 dated 2022-08-12
DESCRIPTION | 10 MD5 | 25 - NEWS | 7 R/TopGear.R |only R/grouplars.R | 650 ++++++++++++++++++++++---------------------- R/nci60.R |only R/rlars.R | 698 ++++++++++++++++++++++++------------------------ R/robustHD-package.R |only R/sparseLTS.R | 8 build/partial.rdb |binary data/TopGear.RData |binary data/nci60.RData |binary man/TopGear.Rd | 155 +++++----- man/nci60.Rd | 113 +++---- man/robustHD-package.Rd | 10 15 files changed, 847 insertions(+), 829 deletions(-)
Title: Loading Data from 'Google Ads API'
Description: Interface for loading data from 'Google Ads API',
see <https://developers.google.com/google-ads/api/docs/start>.
Package provide function for authorization and loading reports.
Author: Alexey Seleznev [aut, cre] ,
Netpeak [cph]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rgoogleads versions 0.7.1 dated 2022-05-31 and 0.8.0 dated 2022-08-12
DESCRIPTION | 8 MD5 | 102 +-- NAMESPACE | 102 +-- NEWS.md | 4 R/gads_auth.R | 816 +++++++++++++-------------- R/gads_check_errors.R | 200 +++--- R/gads_customer.R | 78 +- R/gads_get_accessible_customers.R | 116 +-- R/gads_get_account_hierarchy.R | 162 ++--- R/gads_get_fields.R | 110 +-- R/gads_get_keywords.R | 128 ++-- R/gads_get_report_helper.R | 272 ++++----- R/gads_utils.R | 282 ++++----- R/rgoogleads_package.R | 132 ++-- R/zzz.R | 222 +++---- README.md | 384 ++++++------ build/vignette.rds |binary inst/doc/migrate_from_radrowds_us.Rmd | 320 +++++----- inst/doc/migrate_from_radrowds_us.html | 15 inst/doc/migrate_from_radwords_ru.Rmd | 318 +++++----- inst/doc/migrate_from_radwords_ru.html | 15 man/gads_auth.Rd | 224 +++---- man/gads_auth_configure.Rd | 208 +++--- man/gads_check_errors.Rd | 46 - man/gads_customer.Rd | 44 - man/gads_customer_id_from_env.Rd | 28 man/gads_customer_id_to_env.Rd | 34 - man/gads_deauth.Rd | 56 - man/gads_fix_names.Rd | 34 - man/gads_get_accessible_customers.Rd | 44 - man/gads_get_account_hierarchy.Rd | 70 +- man/gads_get_ad_group_criterions.Rd | 268 ++++---- man/gads_get_ad_groups.Rd | 140 ++-- man/gads_get_ads.Rd | 304 +++++----- man/gads_get_campaigns.Rd | 170 ++--- man/gads_get_fields.Rd | 50 - man/gads_get_geo_targets.Rd | 60 - man/gads_get_keywords.Rd | 116 +-- man/gads_get_metadata.Rd | 90 +- man/gads_get_report.Rd | 279 ++++----- man/gads_has_token.Rd | 40 - man/gads_keyword_plan_forecast_metrics.Rd | 104 +-- man/gads_keyword_plan_forecast_timeseries.Rd | 104 +-- man/gads_keyword_plan_historical_metrics.Rd | 106 +-- man/gads_last_request_ids.Rd | 38 - man/gads_set_customer_id.Rd | 34 - man/gads_set_login_customer_id.Rd | 34 - man/gads_token.Rd | 52 - man/gads_user.Rd | 38 - man/rgoogleads-package.Rd | 140 ++-- vignettes/migrate_from_radrowds_us.Rmd | 320 +++++----- vignettes/migrate_from_radwords_ru.Rmd | 318 +++++----- 52 files changed, 3692 insertions(+), 3687 deletions(-)
Title: Relative Survival
Description: Contains functions for analysing relative survival data, including nonparametric estimators of net (marginal relative) survival, relative survival ratio, crude mortality, methods for fitting and checking additive and multiplicative regression models, transformation approach, methods for dealing with population mortality tables. Work has been described in Pohar Perme, Pavlic (2018) <doi:10.18637/jss.v087.i08>.
Author: Maja Pohar Perme [aut],
Damjan Manevski [aut, cre]
Maintainer: Damjan Manevski <damjan.manevski@mf.uni-lj.si>
Diff between relsurv versions 2.2-7 dated 2022-03-09 and 2.2-8 dated 2022-08-12
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/rformulate.r | 2 +- R/years.R | 2 +- inst/news.Rd | 6 ++++++ src/pystep.c | 2 +- src/pystep2.c | 2 +- src/survprotomoj.h | 4 ++-- 8 files changed, 23 insertions(+), 17 deletions(-)
Title: General Linear Mixed Models for Gene-Level Differential
Expression
Description: Using mixed effects models to analyse longitudinal gene expression can highlight differences between sample groups over time. The most widely used differential gene expression tools are unable to fit linear mixed effect models, and are less optimal for analysing longitudinal data. This package provides negative binomial and Gaussian mixed effects models to fit gene expression and other biological data across repeated samples. This is particularly useful for investigating changes in RNA-Sequencing gene expression between groups of individuals over time, as described in: Rivellese, F., Surace, A. E., Goldmann, K., Sciacca, E., Cubuk, C., Giorli, G., ... Lewis, M. J., & Pitzalis, C. (2022) Nature medicine <doi:10.1038/s41591-022-01789-0>.
Author: Myles Lewis [aut] ,
Katriona Goldmann [aut, cre] ,
Elisabetta Sciacca [aut] ,
Cankut Cubuk [ctb] ,
Anna Surace [ctb]
Maintainer: Katriona Goldmann <k.goldmann@qmul.ac.uk>
Diff between glmmSeq versions 0.2.0 dated 2022-07-11 and 0.4.0 dated 2022-08-12
glmmSeq-0.2.0/glmmSeq/R/glmmGene.R |only glmmSeq-0.2.0/glmmSeq/R/pairedPlots.R |only glmmSeq-0.2.0/glmmSeq/man/glmerApply.Rd |only glmmSeq-0.2.0/glmmSeq/man/glmmGene.Rd |only glmmSeq-0.2.0/glmmSeq/man/lmerApply.Rd |only glmmSeq-0.2.0/glmmSeq/man/pairedPlot.Rd |only glmmSeq-0.2.0/glmmSeq/vignettes/glmmSeq_cache |only glmmSeq-0.4.0/glmmSeq/DESCRIPTION | 12 glmmSeq-0.4.0/glmmSeq/MD5 | 172 glmmSeq-0.4.0/glmmSeq/NAMESPACE | 24 glmmSeq-0.4.0/glmmSeq/NEWS.md | 37 glmmSeq-0.4.0/glmmSeq/R/AllClass.R |only glmmSeq-0.4.0/glmmSeq/R/PEAC_minimal_load.R | 1 glmmSeq-0.4.0/glmmSeq/R/fcPlot.R | 104 glmmSeq-0.4.0/glmmSeq/R/ggmodelPlot.R |only glmmSeq-0.4.0/glmmSeq/R/glmmQvals.R | 49 glmmSeq-0.4.0/glmmSeq/R/glmmRefit.R |only glmmSeq-0.4.0/glmmSeq/R/glmmSeq.R | 323 glmmSeq-0.4.0/glmmSeq/R/lmer_wald.R |only glmmSeq-0.4.0/glmmSeq/R/lmmSeq.R | 515 - glmmSeq-0.4.0/glmmSeq/R/maPlot.R | 108 glmmSeq-0.4.0/glmmSeq/R/modelPlot.R | 428 - glmmSeq-0.4.0/glmmSeq/R/summary_lmmSeq.R |only glmmSeq-0.4.0/glmmSeq/README.md | 12 glmmSeq-0.4.0/glmmSeq/build/vignette.rds |binary glmmSeq-0.4.0/glmmSeq/data/PEAC_minimal_load.rdata |binary glmmSeq-0.4.0/glmmSeq/inst/WORDLIST | 9 glmmSeq-0.4.0/glmmSeq/inst/doc/glmmSeq.R | 332 glmmSeq-0.4.0/glmmSeq/inst/doc/glmmSeq.html | 7464 ++++++++++++++------- glmmSeq-0.4.0/glmmSeq/inst/doc/glmmSeq.rmd | 385 - glmmSeq-0.4.0/glmmSeq/man/GlmmSeq-class.Rd | 14 glmmSeq-0.4.0/glmmSeq/man/fcPlot.Rd | 38 glmmSeq-0.4.0/glmmSeq/man/ggmodelPlot.Rd |only glmmSeq-0.4.0/glmmSeq/man/glmmQvals.Rd | 11 glmmSeq-0.4.0/glmmSeq/man/glmmRefit.Rd |only glmmSeq-0.4.0/glmmSeq/man/glmmSeq.Rd | 63 glmmSeq-0.4.0/glmmSeq/man/lmmSeq-class.Rd | 12 glmmSeq-0.4.0/glmmSeq/man/lmmSeq.Rd | 94 glmmSeq-0.4.0/glmmSeq/man/maPlot.Rd | 35 glmmSeq-0.4.0/glmmSeq/man/metadata.Rd | 1 glmmSeq-0.4.0/glmmSeq/man/modelPlot.Rd | 128 glmmSeq-0.4.0/glmmSeq/man/tpm.Rd | 2 glmmSeq-0.4.0/glmmSeq/vignettes/glmmSeq.rmd | 385 - 43 files changed, 6647 insertions(+), 4111 deletions(-)
Title: Multivariate Multiscale Spatial Analysis
Description: Tools for the multiscale spatial analysis of multivariate data.
Several methods are based on the use of a spatial weighting matrix and its
eigenvector decomposition (Moran's Eigenvectors Maps, MEM).
Several approaches are described in the review Dray et al (2012)
<doi:10.1890/11-1183.1>.
Author: Stephane Dray, David Bauman, Guillaume Blanchet, Daniel Borcard,
Sylvie Clappe, Guillaume Guenard, Thibaut Jombart, Guillaume Larocque,
Pierre Legendre, Naima Madi, Helene H Wagner
Maintainer: Stephane Dray <stephane.dray@univ-lyon1.fr>
Diff between adespatial versions 0.3-16 dated 2022-03-31 and 0.3-18 dated 2022-08-12
DESCRIPTION | 10 MD5 | 14 R/multispati.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/tutorial.html | 845 +++++++++++++++++++++++++++++++++++++++--------- man/aem.weight.edges.Rd | 4 man/multispati.Rd | 2 8 files changed, 706 insertions(+), 171 deletions(-)
Title: Reliability and Scoring Routines for the Approach-Avoidance Task
Description: Compute approach bias scores using different scoring algorithms,
compute bootstrapped and exact split-half reliability estimates,
and compute confidence intervals for individual participant scores.
Author: Sercan Kahveci [aut, cre]
Maintainer: Sercan Kahveci <sercan.kahveci@sbg.ac.at>
Diff between AATtools versions 0.0.1 dated 2020-06-14 and 0.0.2 dated 2022-08-12
AATtools-0.0.1/AATtools/R/AATtools.R |only AATtools-0.0.1/AATtools/man/SpearmanBrown.Rd |only AATtools-0.0.2/AATtools/DESCRIPTION | 8 +-- AATtools-0.0.2/AATtools/MD5 | 52 +++++++++++++++++----- AATtools-0.0.2/AATtools/NAMESPACE | 49 +++++++++++++++++++- AATtools-0.0.2/AATtools/R/aat_bootstrap.R |only AATtools-0.0.2/AATtools/R/aat_compute.R |only AATtools-0.0.2/AATtools/R/aat_covreliability.R |only AATtools-0.0.2/AATtools/R/aat_simulate.R |only AATtools-0.0.2/AATtools/R/aat_splithalf.R |only AATtools-0.0.2/AATtools/R/aat_stimulus_rest.R |only AATtools-0.0.2/AATtools/R/algorithms.R |only AATtools-0.0.2/AATtools/R/cortools.R |only AATtools-0.0.2/AATtools/R/datasplitter.R |only AATtools-0.0.2/AATtools/R/helpers.R |only AATtools-0.0.2/AATtools/R/outlierhandlers.R |only AATtools-0.0.2/AATtools/R/q_reliability.R |only AATtools-0.0.2/AATtools/R/relcorrections.R |only AATtools-0.0.2/AATtools/R/sysdata.rda |only AATtools-0.0.2/AATtools/R/zzz.R |only AATtools-0.0.2/AATtools/man/Algorithms.Rd | 46 +++++++++++-------- AATtools-0.0.2/AATtools/man/Preprocessing.Rd | 10 +++- AATtools-0.0.2/AATtools/man/aat_bootstrap.Rd | 11 ++-- AATtools-0.0.2/AATtools/man/aat_compute.Rd | 8 ++- AATtools-0.0.2/AATtools/man/aat_covreliability.Rd |only AATtools-0.0.2/AATtools/man/aat_simulate.Rd |only AATtools-0.0.2/AATtools/man/aat_splithalf.Rd | 40 +++++++++++----- AATtools-0.0.2/AATtools/man/aat_stimulus_rest.Rd |only AATtools-0.0.2/AATtools/man/aat_stimulusscores.Rd |only AATtools-0.0.2/AATtools/man/cormean.Rd |only AATtools-0.0.2/AATtools/man/correlation-tools.Rd |only AATtools-0.0.2/AATtools/man/covEM.Rd |only AATtools-0.0.2/AATtools/man/covrel.Rd |only AATtools-0.0.2/AATtools/man/erotica.Rd | 4 + AATtools-0.0.2/AATtools/man/figures |only AATtools-0.0.2/AATtools/man/multiple.cor.Rd |only AATtools-0.0.2/AATtools/man/partial.cor.Rd |only AATtools-0.0.2/AATtools/man/q_reliability.Rd | 26 ++++++++++- AATtools-0.0.2/AATtools/man/splitrel.Rd |only 39 files changed, 193 insertions(+), 61 deletions(-)
Title: Tools for Quantitative Risk Management
Description: Functions and data sets for reproducing selected results from
the book "Quantitative Risk Management: Concepts, Techniques and Tools".
Furthermore, new developments and auxiliary functions for Quantitative
Risk Management practice.
Author: Marius Hofert [aut, cre],
Kurt Hornik [aut],
Alexander J. McNeil [aut]
Maintainer: Marius Hofert <marius.hofert@uwaterloo.ca>
Diff between qrmtools versions 0.0-15 dated 2022-05-31 and 0.0-16 dated 2022-08-12
DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++-------------- build/vignette.rds |binary inst/doc/ARMA_GARCH_VaR.html | 4 ++-- inst/doc/VaR_bounds.html | 6 +++--- inst/doc/geometric_risk_measures.html | 4 ++-- man/GEV.Rd | 7 ++++--- man/GPD.Rd | 10 ++++++---- man/Hill.Rd | 4 ++-- man/fit_GARCH_11.Rd | 26 +++++++++++++------------- man/get_data.Rd | 18 +++++++++--------- man/mean_excess.Rd | 4 ++-- man/risk_measures.Rd | 32 ++++++++++++++++---------------- man/step_plot.Rd | 6 +++--- man/tests.Rd | 8 ++++---- 15 files changed, 85 insertions(+), 82 deletions(-)
More information about OSLdecomposition at CRAN
Permanent link
Title: Estimate Growth Rates from Experimental Data
Description: A collection of methods to determine growth rates from
experimental data, in particular from batch experiments and
plate reader trials.
Author: Thomas Petzoldt [aut, cre]
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between growthrates versions 0.8.2 dated 2020-11-02 and 0.8.3 dated 2022-08-12
growthrates-0.8.2/growthrates/data/antibiotic.txt |only growthrates-0.8.2/growthrates/data/bactgrowth.txt |only growthrates-0.8.3/growthrates/DESCRIPTION | 10 growthrates-0.8.3/growthrates/MD5 | 30 growthrates-0.8.3/growthrates/R/fit_easylinear.R | 210 +-- growthrates-0.8.3/growthrates/README.md | 2 growthrates-0.8.3/growthrates/build/partial.rdb |binary growthrates-0.8.3/growthrates/build/vignette.rds |binary growthrates-0.8.3/growthrates/data/antibiotic.txt.gz |only growthrates-0.8.3/growthrates/data/bactgrowth.txt.gz |only growthrates-0.8.3/growthrates/inst/doc/Introduction.Rmd | 940 +++++++-------- growthrates-0.8.3/growthrates/inst/doc/Introduction.html | 682 ++++++---- growthrates-0.8.3/growthrates/inst/doc/User_models.Rmd | 662 +++++----- growthrates-0.8.3/growthrates/inst/doc/User_models.html | 547 ++++---- growthrates-0.8.3/growthrates/man/fit_easylinear.Rd | 4 growthrates-0.8.3/growthrates/vignettes/Introduction.Rmd | 940 +++++++-------- growthrates-0.8.3/growthrates/vignettes/User_models.Rmd | 662 +++++----- growthrates-0.8.3/growthrates/vignettes/growthrates.bib | 367 ++--- 18 files changed, 2652 insertions(+), 2404 deletions(-)
Title: Generalized Method of Moments and Generalized Empirical
Likelihood
Description: It is a complete suite to estimate models based on moment conditions. It includes the two step Generalized method of moments (Hansen 1982; <doi:10.2307/1912775>), the iterated GMM and continuous updated estimator (Hansen, Eaton and Yaron 1996; <doi:10.2307/1392442>) and several methods that belong to the Generalized Empirical Likelihood family of estimators (Smith 1997; <doi:10.1111/j.0013-0133.1997.174.x>, Kitamura 1997; <doi:10.1214/aos/1069362388>, Newey and Smith 2004; <doi:10.1111/j.1468-0262.2004.00482.x>, and Anatolyev 2005 <doi:10.1111/j.1468-0262.2005.00601.x>).
Author: Pierre Chausse <pchausse@uwaterloo.ca>
Maintainer: Pierre Chausse <pchausse@uwaterloo.ca>
Diff between gmm versions 1.6-6 dated 2021-03-05 and 1.7 dated 2022-08-12
DESCRIPTION | 12 ++++++------ MD5 | 39 ++++++++++++++++++++------------------- NEWS | 7 ------- build/partial.rdb |only build/vignette.rds |binary data/Finance.rda |binary data/Growth.rda |binary data/nsw.rda |binary data/wage.rda |binary inst/CITATION | 4 ++-- inst/doc/gmm_with_R.pdf |binary inst/doc/gmm_with_R.rnw | 2 +- man/ATEgel.Rd | 2 +- man/bread.Rd | 2 +- man/bwWilhelm.Rd | 2 +- man/estfun.Rd | 2 +- man/gel.Rd | 4 ++-- man/gmm.Rd | 4 ++-- man/smoothG.Rd | 2 +- man/sysGmm.Rd | 2 +- vignettes/gmm_with_R.rnw | 2 +- 21 files changed, 40 insertions(+), 46 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Statistics: locate and tag peaks and valleys; label plot with the
equation of a fitted polynomial or other types of models; labels
with P-value, R^2 or adjusted R^2 or information criteria for fitted models;
label with ANOVA table for fitted models; label with summary for fitted
models. Model fit classes for which suitable methods are provided by package
'broom' and 'broom.mixed' are supported. Scales and stats to build volcano
and quadrant plots based on outcomes, fold changes, p-values and false
discovery rates.
Author: Pedro J. Aphalo [aut, cre] ,
Kamil Slowikowski [ctb] ,
Samer Mouksassi [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.4.7 dated 2022-06-15 and 0.5.0 dated 2022-08-12
ggpmisc-0.4.7/ggpmisc/R/stat-quant-band.R |only ggpmisc-0.5.0/ggpmisc/DESCRIPTION | 20 ggpmisc-0.5.0/ggpmisc/MD5 | 80 ggpmisc-0.5.0/ggpmisc/NAMESPACE | 4 ggpmisc-0.5.0/ggpmisc/NEWS.md | 13 ggpmisc-0.5.0/ggpmisc/R/keep-tidy.R |only ggpmisc-0.5.0/ggpmisc/R/stat-correlation.R | 310 - ggpmisc-0.5.0/ggpmisc/R/stat-fit-broom-tb.R | 290 - ggpmisc-0.5.0/ggpmisc/R/stat-fit-broom.R | 140 ggpmisc-0.5.0/ggpmisc/R/stat-fit-deviations.R | 10 ggpmisc-0.5.0/ggpmisc/R/stat-fit-residuals.R | 16 ggpmisc-0.5.0/ggpmisc/R/stat-ma-eq.R | 141 ggpmisc-0.5.0/ggpmisc/R/stat-ma-line.R | 28 ggpmisc-0.5.0/ggpmisc/R/stat-poly-eq.R | 247 ggpmisc-0.5.0/ggpmisc/R/stat-poly-line.R | 44 ggpmisc-0.5.0/ggpmisc/R/stat-quant-band.r |only ggpmisc-0.5.0/ggpmisc/R/stat-quant-eq.R | 179 ggpmisc-0.5.0/ggpmisc/R/stat-quant-line.r | 14 ggpmisc-0.5.0/ggpmisc/R/use-label.R |only ggpmisc-0.5.0/ggpmisc/README.md | 30 ggpmisc-0.5.0/ggpmisc/build/vignette.rds |binary ggpmisc-0.5.0/ggpmisc/inst/doc/model-based-annotations.R | 275 ggpmisc-0.5.0/ggpmisc/inst/doc/model-based-annotations.Rmd | 626 +- ggpmisc-0.5.0/ggpmisc/inst/doc/model-based-annotations.html | 2756 +++++----- ggpmisc-0.5.0/ggpmisc/man/figures/README-readme-04b-1.png |binary ggpmisc-0.5.0/ggpmisc/man/figures/README-unnamed-chunk-1-1.png |binary ggpmisc-0.5.0/ggpmisc/man/ggpmisc-ggproto.Rd | 2 ggpmisc-0.5.0/ggpmisc/man/keep_tidy.Rd |only ggpmisc-0.5.0/ggpmisc/man/stat_correlation.Rd | 97 ggpmisc-0.5.0/ggpmisc/man/stat_fit_augment.Rd | 15 ggpmisc-0.5.0/ggpmisc/man/stat_fit_deviations.Rd | 420 - ggpmisc-0.5.0/ggpmisc/man/stat_fit_glance.Rd | 18 ggpmisc-0.5.0/ggpmisc/man/stat_fit_residuals.Rd | 422 - ggpmisc-0.5.0/ggpmisc/man/stat_fit_tb.Rd | 211 ggpmisc-0.5.0/ggpmisc/man/stat_fit_tidy.Rd | 12 ggpmisc-0.5.0/ggpmisc/man/stat_ma_eq.Rd | 91 ggpmisc-0.5.0/ggpmisc/man/stat_ma_line.Rd | 8 ggpmisc-0.5.0/ggpmisc/man/stat_poly_eq.Rd | 159 ggpmisc-0.5.0/ggpmisc/man/stat_poly_line.Rd | 10 ggpmisc-0.5.0/ggpmisc/man/stat_quant_band.Rd | 8 ggpmisc-0.5.0/ggpmisc/man/stat_quant_eq.Rd | 130 ggpmisc-0.5.0/ggpmisc/man/stat_quant_line.Rd | 8 ggpmisc-0.5.0/ggpmisc/man/use_label.Rd |only ggpmisc-0.5.0/ggpmisc/vignettes/model-based-annotations.Rmd | 626 +- 44 files changed, 4350 insertions(+), 3110 deletions(-)
Title: Standardize Dates in Different Formats or with Missing Data
Description: There are many different formats dates are commonly
represented with: the order of day, month, or year can differ,
different separators ("-", "/", or whitespace) can be used, months can
be numerical, names, or abbreviations and year given as two digits or
four. 'datefixR' takes dates in all these different formats and
converts them to R's built-in date class. If 'datefixR' cannot
standardize a date, such as because it is too malformed, then the user
is told which date cannot be standardized and the corresponding ID for
the row. 'datefixR' also allows the imputation of missing days and
months with user-controlled behavior.
Author: Nathan Constantine-Cooke [aut, cre]
,
Kaique dos S. Alves [rev] ,
Al-Ahmadgaid B. Asaad [rev]
Maintainer: Nathan Constantine-Cooke <nathan.constantine-cooke@ed.ac.uk>
Diff between datefixR versions 1.0.0 dated 2022-07-18 and 1.1.0 dated 2022-08-12
DESCRIPTION | 62 +++++++++---------- MD5 | 37 +++++++++-- NAMESPACE | 1 NEWS.md | 24 +++++++ R/fix_date_char.R | 3 R/fix_date_df.R | 4 - R/internal.R | 37 ++++------- R/months.R |only R/shinyapp.R |only README.md | 19 +++--- inst/WORDLIST | 2 inst/doc/datefixR.html | 115 ++++++++++++++++++------------------- inst/example.csv |only inst/example.xlsx |only man/figures/example.svg |only man/fix_date_app.Rd |only tests/testthat/apps |only tests/testthat/test_app_1.R |only tests/testthat/test_fix_date_app.R |only tests/testthat/test_languages.R |only 20 files changed, 168 insertions(+), 136 deletions(-)
Title: Statistical Modeling
Description: A collection of algorithms and functions to aid statistical modeling. Includes limiting dilution analysis (aka ELDA), growth curve comparisons, mixed linear models, heteroscedastic regression, inverse-Gaussian probability calculations, Gauss quadrature and a secure convergence algorithm for nonlinear models. Also includes advanced generalized linear model functions including Tweedie and Digamma distributional families and a secure convergence algorithm.
Author: Gordon Smyth [cre, aut], Yifang Hu [ctb], Peter Dunn [ctb], Belinda Phipson [ctb], Yunshun Chen [ctb]
Maintainer: Gordon Smyth <smyth@wehi.edu.au>
Diff between statmod versions 1.4.36 dated 2021-05-10 and 1.4.37 dated 2022-08-12
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- build/partial.rdb |binary inst/NEWS | 15 +++++++++++++++ man/elda.Rd | 4 ++-- man/fitNBP.Rd | 5 ++++- man/gauss.quad.Rd | 2 +- man/gauss.quad.prob.Rd | 2 +- man/permp.Rd | 7 ++++--- man/power.Rd | 6 +++++- man/remlscor.Rd | 13 ++++++++----- 11 files changed, 54 insertions(+), 28 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-17 0.1.4
Title: Correction Factors for Tree Plot Areas Intersected by Stand
Boundaries
Description: The German national forest inventory uses angle count sampling,
a sampling method first published as `Bitterlich, W.: Die Winkelzählmessung.
Allgemeine Forst- und Holzwirtschaftliche Zeitung, 58. Jahrg., Folge 11/12
vom Juni 1947` and extended by Grosenbaugh
(<https://academic.oup.com/jof/article-abstract/50/1/32/4684174>)
as probability proportional to size sampling.
When plots are located near stand boundaries, their sizes and hence
their probabilities need to be corrected.
Author: Andreas Dominik Cullmann [aut, cre],
Bernhard Boesch [ctb],
Christoph Fischer [ctb],
Gerald Kaendler [ctb]
Maintainer: Andreas Dominik Cullmann <fvafrcu@mailbox.org>
Diff between treePlotArea versions 1.2.0 dated 2022-08-05 and 1.3.0 dated 2022-08-12
DESCRIPTION | 8 +-- MD5 | 20 ++++----- NEWS.md | 9 ++++ R/get_correction_factors.R | 37 ++++++++---------- inst/NEWS.rd | 11 +++++ inst/doc/An_Introduction_to_treePlotArea.R | 5 -- inst/doc/An_Introduction_to_treePlotArea.Rnw | 5 -- inst/doc/An_Introduction_to_treePlotArea.pdf |binary inst/runit_tests/runit-get_correction_factors.R | 29 +++++++++++--- inst/vignettes_code/An_Introduction_to_treePlotArea.R | 5 -- vignettes/An_Introduction_to_treePlotArea.Rnw | 5 -- 11 files changed, 79 insertions(+), 55 deletions(-)
Title: Client for 'TGStat API'
Description: Allow function for using 'TGStat Stat API' and
'TGStat Search API', for more details see <https://api.tgstat.ru/docs/ru/start/intro.html>.
'TGStat' provide telegram channel analytics data.
Author: Alexey Seleznev [aut, cre]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rtgstat versions 0.3.1 dated 2022-05-02 and 0.3.2 dated 2022-08-12
DESCRIPTION | 8 - MD5 | 50 ++++----- NEWS.md | 3 man/rtgstat-package.Rd | 4 man/tg_auth.Rd | 40 +++---- man/tg_categories.Rd | 40 +++---- man/tg_channel.Rd | 50 ++++----- man/tg_channel_avg_posts_reach.Rd | 96 +++++++++--------- man/tg_channel_err.Rd | 96 +++++++++--------- man/tg_channel_forwards.Rd | 74 +++++++------- man/tg_channel_mentions.Rd | 82 ++++++++-------- man/tg_channel_posts.Rd | 88 ++++++++--------- man/tg_channel_stat.Rd | 50 ++++----- man/tg_channel_subscribers.Rd | 108 ++++++++++----------- man/tg_countries.Rd | 40 +++---- man/tg_get_channel_id.Rd | 28 ++--- man/tg_languages.Rd | 40 +++---- man/tg_mentions_by_channels.Rd | 190 ++++++++++++++++++------------------- man/tg_mentions_by_period.Rd | 190 ++++++++++++++++++------------------- man/tg_options.Rd | 28 ++--- man/tg_post.Rd | 60 +++++------ man/tg_post_stat.Rd | 74 +++++++------- man/tg_posts_search.Rd | 194 +++++++++++++++++++------------------- man/tg_set_channel_id.Rd | 46 ++++----- man/tg_set_check_api_quote.Rd | 34 +++--- man/tg_set_interval.Rd | 34 +++--- 26 files changed, 875 insertions(+), 872 deletions(-)
Title: Load Data from 'Ringostat API'
Description: Loading calls data from 'Ringostat API'.
See <https://help.ringostat.com/knowledge-base/article/integration-with-ringostat-via-api>.
Author: Alexey Seleznev [aut, cre] ,
Netpeak [cph]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between ringostat versions 0.1.3 dated 2021-10-01 and 0.1.5 dated 2022-08-12
DESCRIPTION | 10 ++-- LICENSE | 4 - MD5 | 28 ++++++------ NAMESPACE | 20 ++++---- NEWS.md | 9 ++++ R/ringostat.R | 12 ++--- R/rs_auth.R | 30 ++++++------- R/rs_download_record.R | 68 +++++++++++++++--------------- R/rs_get_call_data.R | 4 - R/zzz.R | 66 ++++++++++++++--------------- README.md | 6 ++ man/ringostat-package.Rd | 42 +++++++++--------- man/rs_auth.Rd | 34 +++++++-------- man/rs_download_record.Rd | 48 ++++++++++----------- man/rs_get_call_data.Rd | 103 +++++++++++++++++++++++----------------------- 15 files changed, 249 insertions(+), 235 deletions(-)
Title: Calculation of the Integrated Flow of Particles Between Polygons
Description: Calculate the flow of particles between polygons by two integration methods:
integration by a cubature method and integration on a grid of points.
Annie Bouvier, Kien Kieu, Kasia Adamczyk and Herve Monod (2009)
<doi:10.1016/j.envsoft.2008.11.006>.
Author: Annie Bouvier [aut, cph],
Kien Kieu [aut, cph],
Kasia Adamczyk [aut, cph],
Herve Monod [aut, cph],
Jean-Francois Rey [cre]
Maintainer: Jean-Francois Rey <jean-francois.rey@inrae.fr>
Diff between RCALI versions 0.3.2 dated 2022-05-04 and 0.3.3 dated 2022-08-12
RCALI-0.3.2/RCALI/NEWS |only RCALI-0.3.3/RCALI/DESCRIPTION | 10 +++++----- RCALI-0.3.3/RCALI/MD5 | 11 +++++------ RCALI-0.3.3/RCALI/NAMESPACE | 1 + RCALI-0.3.3/RCALI/R/listpoly-methods.R | 2 +- RCALI-0.3.3/RCALI/inst/CITATION | 2 +- RCALI-0.3.3/RCALI/src/Point.h | 1 + 7 files changed, 14 insertions(+), 13 deletions(-)
Title: R Interface to 'lp_solve' Version 5.5.2.0
Description: The lpSolveAPI package provides an R interface to 'lp_solve',
a Mixed Integer Linear Programming (MILP) solver with support for pure
linear, (mixed) integer/binary, semi-continuous and special ordered sets
(SOS) models.
Author: lp_solve <http://lpsolve.sourceforge.net/> [aut],
Kjell Konis [aut],
Florian Schwendinger [aut, cre],
Kurt Hornik [ctb]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between lpSolveAPI versions 5.5.2.0-17.7 dated 2020-06-14 and 5.5.2.0-17.8 dated 2022-08-12
lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/add.SOS.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/add.column.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/add.constraint.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/delete.column.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/delete.constraint.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/delete.lp.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/dim.lpExtPtr.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/dimnames.lpExtPtr.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.basis.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.bounds.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.branch.mode.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.column.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.constr.type.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.constr.value.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.constraints.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.dual.solution.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.kind.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.mat.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.objective.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.primal.solution.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.rhs.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.sensitivity.obj.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.sensitivity.objex.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.sensitivity.rhs.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.solutioncount.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.total.iter.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.total.nodes.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.type.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/get.variables.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/guess.basis.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/lp.control.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/make.lp.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/name.lp.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/plot.lpExtPtr.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/print.lpExtPtr.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/read.lp.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/resize.lp.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/row.add.mode.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/select.solution.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/set.basis.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/set.bounds.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/set.branch.mode.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/set.branch.weights.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/set.column.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/set.constr.type.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/set.constr.value.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/set.mat.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/set.objfn.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/set.rhs.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/set.row.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/set.semicont.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/set.type.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/solve.q |only lpSolveAPI-5.5.2.0-17.7/lpSolveAPI/R/write.lp.q |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/ChangeLog | 3 lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/DESCRIPTION | 10 lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/MD5 | 118 +++++----- lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/add.SOS.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/add.column.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/add.constraint.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/delete.column.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/delete.constraint.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/delete.lp.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/dim.lpExtPtr.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/dimnames.lpExtPtr.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.basis.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.bounds.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.branch.mode.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.column.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.constr.type.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.constr.value.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.constraints.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.dual.solution.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.kind.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.mat.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.objective.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.primal.solution.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.rhs.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.sensitivity.obj.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.sensitivity.objex.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.sensitivity.rhs.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.solutioncount.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.total.iter.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.total.nodes.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.type.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/get.variables.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/guess.basis.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/lp.control.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/make.lp.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/name.lp.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/plot.lpExtPtr.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/print.lpExtPtr.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/read.lp.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/resize.lp.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/row.add.mode.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/select.solution.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/set.basis.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/set.bounds.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/set.branch.mode.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/set.branch.weights.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/set.column.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/set.constr.type.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/set.constr.value.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/set.mat.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/set.objfn.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/set.rhs.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/set.row.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/set.semicont.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/set.type.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/solve.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/R/write.lp.R |only lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/man/lp.control.options.Rd | 2 lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/man/read.lp.Rd | 4 lpSolveAPI-5.5.2.0-17.8/lpSolveAPI/src/lp_solve/lp_presolve.c | 6 114 files changed, 75 insertions(+), 68 deletions(-)
Title: Processing various types of data on GEO and TCGA
Description: Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA)
provide us with a wealth of data, such as RNA-seq, DNA Methylation, SNP
and Copy number variation data. It's easy to download data from TCGA using the
gdc tool, but processing these data into a format suitable for bioinformatics
analysis requires more work. This R package was developed to handle these data.
Author: Erqiang Hu [aut, cre]
Maintainer: Erqiang Hu <13766876214@163.com>
Diff between GeoTcgaData versions 1.1.0 dated 2022-08-06 and 1.1.1 dated 2022-08-12
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/RNA_seq.R | 2 ++ README.md | 8 ++++++-- inst/doc/GeoTcgaData.html | 2 +- 5 files changed, 16 insertions(+), 10 deletions(-)
Title: Jackknife(+) Predictive Intervals for Bayesian Models
Description: Provides functions to construct finite-sample calibrated predictive
intervals for Bayesian models, following the approach in Barber et al.
(2021) <doi:10.1214/20-AOS1965>. These intervals are calculated efficiently
using importance sampling for the leave-one-out residuals. By default,
the intervals will also reflect the relative uncertainty in the Bayesian
model, using the locally-weighted conformal methods of Lei et al. (2018)
<doi:10.1080/01621459.2017.1307116>.
Author: Cory McCartan [aut, cre]
Maintainer: Cory McCartan <cmccartan@g.harvard.edu>
Diff between conformalbayes versions 0.1.0 dated 2022-03-10 and 0.1.2 dated 2022-08-12
DESCRIPTION | 10 - MD5 | 13 +- NEWS.md | 8 + README.md | 10 - build/partial.rdb |only build/vignette.rds |binary inst/doc/conformalbayes.html | 254 ++++++++++++++++++++++++++++++++++++++++-- man/conformalbayes-package.Rd | 6 8 files changed, 271 insertions(+), 30 deletions(-)
More information about conformalbayes at CRAN
Permanent link
More information about photosynthesis at CRAN
Permanent link
Title: Multiomics Data Integration
Description: Provides functions to do 'O2PLS-DA' analysis for multiple omics data integration.
The algorithm came from "O2-PLS, a two-block (X±Y) latent variable regression (LVR) method with an integral OSC filter"
which published by Johan Trygg and Svante Wold at 2003 <doi:10.1002/cem.775>.
'O2PLS' is a bidirectional multivariate regression method that aims to separate the covariance between
two data sets (it was recently extended to multiple data sets) (Löfstedt and Trygg, 2011 <doi:10.1002/cem.1388>; Löfstedt et al., 2012 <doi:10.1016/j.aca.2013.06.026>)
from the systematic sources of variance being specific for each data set separately.
Author: Kai Guo [aut, cre],
Junguk Hur [aut],
Eva Feldman [aut]
Maintainer: Kai Guo <guokai8@gmail.com>
Diff between o2plsda versions 0.0.17 dated 2022-07-11 and 0.0.18 dated 2022-08-12
DESCRIPTION | 6 +-- MD5 | 18 +++++----- NAMESPACE | 2 + R/misc.R | 39 ++++++++++++++++++++++ R/plot.R | 8 ++-- R/plsda.R | 90 ++++++++++++++++++++++++++++++++++++++++++++------- man/dot-pls.Rd | 9 +++-- man/plot.plsda.Rd | 8 ++-- man/plsda.Rd | 15 ++++++-- man/print.plsda.Rd |only man/summary.plsda.Rd |only 11 files changed, 158 insertions(+), 37 deletions(-)
Title: Multiple Empirical Likelihood Tests
Description: Performs multiple empirical likelihood tests for linear and
generalized linear models. The core computational routines are
implemented using the 'Eigen' C++ library and 'RcppEigen' interface,
with OpenMP for parallel computation. Details of multiple testing
procedures are given in Kim, MacEachern, and Peruggia (2021)
<arxiv:2112.09206>. This work was supported by the U.S. National
Science Foundation under Grants No. SES-1921523 and DMS-2015552.
Author: Eunseop Kim [aut, cre],
Steven MacEachern [ctb, ths],
Mario Peruggia [ctb, ths]
Maintainer: Eunseop Kim <kim.7302@osu.edu>
Diff between melt versions 1.6.0 dated 2022-07-10 and 1.7.0 dated 2022-08-12
melt-1.6.0/melt/inst/doc/melt.R |only melt-1.6.0/melt/inst/doc/melt.Rmd |only melt-1.6.0/melt/inst/doc/melt.html |only melt-1.6.0/melt/vignettes/melt.Rmd |only melt-1.7.0/melt/DESCRIPTION | 17 - melt-1.7.0/melt/MD5 | 187 ++++++----- melt-1.7.0/melt/NAMESPACE | 13 melt-1.7.0/melt/NEWS.md | 50 +-- melt-1.7.0/melt/R/AllClasses.R | 138 +++++--- melt-1.7.0/melt/R/AllGenerics.R | 154 ++++++++- melt-1.7.0/melt/R/RcppExports.R | 8 melt-1.7.0/melt/R/calibrate.R | 16 melt-1.7.0/melt/R/chisq-methods.R |only melt-1.7.0/melt/R/confint-methods.R | 101 +++++- melt-1.7.0/melt/R/confreg-methods.R | 98 +++++- melt-1.7.0/melt/R/conv-methods.R | 12 melt-1.7.0/melt/R/critVal-methods.R |only melt-1.7.0/melt/R/data.R | 12 melt-1.7.0/melt/R/deprecated.R |only melt-1.7.0/melt/R/el_control.R | 16 melt-1.7.0/melt/R/el_eval.R | 32 - melt-1.7.0/melt/R/el_glm.R | 86 +++-- melt-1.7.0/melt/R/el_lm.R | 22 - melt-1.7.0/melt/R/el_mean.R | 17 - melt-1.7.0/melt/R/el_sd.R | 9 melt-1.7.0/melt/R/eld-methods.R | 19 - melt-1.7.0/melt/R/elmt-methods.R | 44 ++ melt-1.7.0/melt/R/elt-methods.R | 127 +++++-- melt-1.7.0/melt/R/getDF-methods.R |only melt-1.7.0/melt/R/getOptim-methods.R |only melt-1.7.0/melt/R/logL-methods.R |only melt-1.7.0/melt/R/logLik-methods.R | 5 melt-1.7.0/melt/R/melt-package.R | 11 melt-1.7.0/melt/R/pVal-methods.R |only melt-1.7.0/melt/R/plot-methods.R | 8 melt-1.7.0/melt/R/print-methods.R | 273 ++++++++++++++--- melt-1.7.0/melt/R/sigTests-methods.R |only melt-1.7.0/melt/R/srr-stats-standards.R | 2 melt-1.7.0/melt/R/summary-methods.R | 105 +++++- melt-1.7.0/melt/R/validate.R | 40 +- melt-1.7.0/melt/README.md | 19 - melt-1.7.0/melt/build/vignette.rds |binary melt-1.7.0/melt/inst/WORDLIST | 12 melt-1.7.0/melt/inst/doc/model.R |only melt-1.7.0/melt/inst/doc/model.Rmd |only melt-1.7.0/melt/inst/doc/model.html |only melt-1.7.0/melt/inst/doc/performance.html | 34 +- melt-1.7.0/melt/man/CEL-class.Rd | 17 - melt-1.7.0/melt/man/ConfregEL-class.Rd | 5 melt-1.7.0/melt/man/EL-class.Rd | 13 melt-1.7.0/melt/man/ELD-class.Rd | 6 melt-1.7.0/melt/man/GLM-class.Rd | 12 melt-1.7.0/melt/man/LM-class.Rd | 18 - melt-1.7.0/melt/man/QGLM-class.Rd |only melt-1.7.0/melt/man/SummaryGLM-class.Rd |only melt-1.7.0/melt/man/SummaryLM-class.Rd | 6 melt-1.7.0/melt/man/SummaryQGLM-class.Rd |only melt-1.7.0/melt/man/chisq.Rd |only melt-1.7.0/melt/man/clothianidin.Rd | 12 melt-1.7.0/melt/man/confint.Rd | 3 melt-1.7.0/melt/man/confreg.Rd | 10 melt-1.7.0/melt/man/conv.Rd | 14 melt-1.7.0/melt/man/critVal.Rd |only melt-1.7.0/melt/man/el_control.Rd | 16 melt-1.7.0/melt/man/el_eval.Rd | 27 - melt-1.7.0/melt/man/el_glm.Rd | 12 melt-1.7.0/melt/man/el_lm.Rd | 4 melt-1.7.0/melt/man/el_mean.Rd | 11 melt-1.7.0/melt/man/el_pairwise.Rd |only melt-1.7.0/melt/man/el_sd.Rd | 3 melt-1.7.0/melt/man/eld.Rd | 6 melt-1.7.0/melt/man/elmt.Rd | 3 melt-1.7.0/melt/man/elt.Rd | 1 melt-1.7.0/melt/man/getDF.Rd |only melt-1.7.0/melt/man/getOptim.Rd |only melt-1.7.0/melt/man/logL.Rd |only melt-1.7.0/melt/man/logLik.Rd | 2 melt-1.7.0/melt/man/logLikEL-class.Rd | 2 melt-1.7.0/melt/man/melt-package.Rd |only melt-1.7.0/melt/man/nobs.Rd | 2 melt-1.7.0/melt/man/pVal.Rd |only melt-1.7.0/melt/man/plot.Rd | 6 melt-1.7.0/melt/man/print.Rd | 21 + melt-1.7.0/melt/man/sigTests.Rd |only melt-1.7.0/melt/man/summary.Rd | 20 + melt-1.7.0/melt/src/EL.cpp | 15 melt-1.7.0/melt/src/RcppExports.cpp | 46 ++ melt-1.7.0/melt/src/compute_confidence_intervals.cpp | 6 melt-1.7.0/melt/src/compute_confidence_region.cpp | 14 melt-1.7.0/melt/src/deprecated.cpp |only melt-1.7.0/melt/src/deprecated.h |only melt-1.7.0/melt/src/helpers.cpp | 58 +++ melt-1.7.0/melt/src/helpers.h | 10 melt-1.7.0/melt/src/test_GLM.cpp | 147 --------- melt-1.7.0/melt/src/test_LM.cpp | 13 melt-1.7.0/melt/src/test_QGLM.cpp |only melt-1.7.0/melt/src/test_multiple_hypotheses_utils.cpp | 27 + melt-1.7.0/melt/src/test_multiple_hypotheses_utils.h | 3 melt-1.7.0/melt/tests/testthat/setup.R | 1 melt-1.7.0/melt/tests/testthat/test-confint.R | 39 ++ melt-1.7.0/melt/tests/testthat/test-confreg.R | 55 ++- melt-1.7.0/melt/tests/testthat/test-el_glm.R | 53 ++- melt-1.7.0/melt/tests/testthat/test-el_lm.R | 60 +-- melt-1.7.0/melt/tests/testthat/test-el_mean.R | 22 - melt-1.7.0/melt/tests/testthat/test-el_sd.R | 4 melt-1.7.0/melt/tests/testthat/test-eld.R | 8 melt-1.7.0/melt/tests/testthat/test-elt.R | 29 + melt-1.7.0/melt/tests/testthat/test-logLik.R | 10 melt-1.7.0/melt/tests/testthat/test-skip_on_cran.R | 160 +++++++-- melt-1.7.0/melt/vignettes/model.Rmd |only 110 files changed, 1873 insertions(+), 846 deletions(-)
Title: Tidy IP Addresses
Description: Classes and functions for working with IP (Internet Protocol)
addresses and networks, inspired by the Python 'ipaddress' module.
Offers full support for both IPv4 and IPv6 (Internet Protocol versions
4 and 6) address spaces. It is specifically designed to work well with
the 'tidyverse'.
Author: David Hall [aut, cre]
Maintainer: David Hall <david.hall.physics@gmail.com>
Diff between ipaddress versions 0.5.4 dated 2022-01-11 and 0.5.5 dated 2022-08-12
DESCRIPTION | 8 MD5 | 16 - NEWS.md | 4 README.md | 2 build/vignette.rds |binary inst/doc/ipaddress-classes.html | 326 +++++++++++++++++++++++++++++++++++---- inst/doc/ipaddress-examples.html | 271 +++++++++++++++++++++++++++++--- man/figures/logo.png |binary man/ipaddress-package.Rd | 2 9 files changed, 563 insertions(+), 66 deletions(-)
Title: Tools for Spatial Data
Description: For curve, surface and function fitting with an emphasis
on splines, spatial data, geostatistics, and spatial statistics. The major methods
include cubic, and thin plate splines, Kriging, and compactly supported
covariance functions for large data sets. The splines and Kriging methods are
supported by functions that can determine the smoothing parameter
(nugget and sill variance) and other covariance function parameters by cross
validation and also by restricted maximum likelihood. For Kriging
there is an easy to use function that also estimates the correlation
scale (range parameter). A major feature is that any covariance function
implemented in R and following a simple format can be used for
spatial prediction. There are also many useful functions for plotting
and working with spatial data as images. This package also contains
an implementation of sparse matrix methods for large spatial data
sets and currently requires the sparse matrix (spam) package. Use
help(fields) to get started and for an overview. The fields source
code is deliberately commented and provides useful explanations of
numerical details as a companion to the manual pages. The commented
source code can be viewed by expanding the source code version
and looking in the R subdirectory. The reference for fields can be generated
by the citation function in R and has DOI <doi:10.5065/D6W957CT>. Development
of this package was supported in part by the National Science Foundation Grant
1417857, the National Center for Atmospheric Research, and Colorado School of Mines.
See the Fields URL
for a vignette on using this package and some background on spatial statistics.
Author: Douglas Nychka [aut, cre],
Reinhard Furrer [aut],
John Paige [aut],
Stephan Sain [aut],
Florian Gerber [aut],
Matthew Iverson [aut],
University Corporation for Atmospheric Research [cph]
Maintainer: Douglas Nychka <douglasnychka@gmail.com>
Diff between fields versions 14.0 dated 2022-07-05 and 14.1 dated 2022-08-12
fields-14.0/fields/tests/temp.R |only fields-14.1/fields/DESCRIPTION | 8 fields-14.1/fields/MD5 | 870 ++++++++------ fields-14.1/fields/R/BD.R | 2 fields-14.1/fields/R/ChicagoO3.R | 4 fields-14.1/fields/R/Exponential.R | 2 fields-14.1/fields/R/ExponentialUpper.R | 2 fields-14.1/fields/R/Krig.R | 2 fields-14.1/fields/R/Krig.family.R | 2 fields-14.1/fields/R/KrigFindLambda.R | 2 fields-14.1/fields/R/Matern.R | 2 fields-14.1/fields/R/Matern.parameters.R | 2 fields-14.1/fields/R/QSreg.R | 2 fields-14.1/fields/R/QTps.R | 2 fields-14.1/fields/R/RMprecip.R | 2 fields-14.1/fields/R/ROLD |only fields-14.1/fields/R/RadialBasis.R | 2 fields-14.1/fields/R/RdistEarth.R | 2 fields-14.1/fields/R/SUBSCRIPTINGSpatialDesign.R | 2 fields-14.1/fields/R/Tps.R | 2 fields-14.1/fields/R/US.R | 2 fields-14.1/fields/R/add.image.R | 2 fields-14.1/fields/R/addColorBarTriangle.R | 2 fields-14.1/fields/R/addLegend.R | 2 fields-14.1/fields/R/addMarginsGridList.R | 2 fields-14.1/fields/R/arrow.plot.R | 2 fields-14.1/fields/R/as.image.R | 2 fields-14.1/fields/R/as.surface.R | 55 fields-14.1/fields/R/bisection.search.R | 2 fields-14.1/fields/R/bplot.family.R | 2 fields-14.1/fields/R/cat.matrix.R | 2 fields-14.1/fields/R/cat.to.list.R | 2 fields-14.1/fields/R/ceiling2.R | 2 fields-14.1/fields/R/circulantEmbedding.R | 4 fields-14.1/fields/R/circulantEmbeddingSetup.R | 16 fields-14.1/fields/R/coef.Krig.R | 2 fields-14.1/fields/R/color.scale.R | 2 fields-14.1/fields/R/colorBar.R | 2 fields-14.1/fields/R/colorbar.plot.R | 2 fields-14.1/fields/R/compactToMat.R | 2 fields-14.1/fields/R/confidenceIntervalMLE.R | 2 fields-14.1/fields/R/cover.design.R | 2 fields-14.1/fields/R/cubic.cov.R | 2 fields-14.1/fields/R/describe.R | 2 fields-14.1/fields/R/discretize.image.R | 2 fields-14.1/fields/R/double.exp.R | 2 fields-14.1/fields/R/drape.color.R | 2 fields-14.1/fields/R/drape.plot.R | 2 fields-14.1/fields/R/dyadic.2check.R | 2 fields-14.1/fields/R/dyadic.check.R | 2 fields-14.1/fields/R/envelopePlot.R | 2 fields-14.1/fields/R/evlpoly.R | 2 fields-14.1/fields/R/evlpoly2.R | 2 fields-14.1/fields/R/exp.cov.R | 2 fields-14.1/fields/R/exp.earth.cov.R | 2 fields-14.1/fields/R/exp.image.cov.R | 2 fields-14.1/fields/R/exp.simple.cov.R | 2 fields-14.1/fields/R/fast.1way.R | 2 fields-14.1/fields/R/fastTps.R | 2 fields-14.1/fields/R/fields.color.picker.R | 2 fields-14.1/fields/R/fields.convert.grid.R | 2 fields-14.1/fields/R/fields.derivative.poly.R | 2 fields-14.1/fields/R/fields.duplicated.matrix.R | 2 fields-14.1/fields/R/fields.mkpoly.R | 2 fields-14.1/fields/R/fields.rdist.near.R | 2 fields-14.1/fields/R/fields.style.R | 2 fields-14.1/fields/R/fields.x.to.grid.R | 21 fields-14.1/fields/R/find.upcross.R | 2 fields-14.1/fields/R/fitted.Krig.R | 2 fields-14.1/fields/R/flame.R | 2 fields-14.1/fields/R/gauss.cov.R | 2 fields-14.1/fields/R/gcv.sreg.R | 2 fields-14.1/fields/R/golden.section.search.R | 2 fields-14.1/fields/R/image.family.R | 2 fields-14.1/fields/R/image.plot.R | 2 fields-14.1/fields/R/image.smooth.R | 2 fields-14.1/fields/R/imagePlot.R | 2 fields-14.1/fields/R/in.poly.R | 2 fields-14.1/fields/R/interp.surface.R | 2 fields-14.1/fields/R/interp.surface.grid.R | 2 fields-14.1/fields/R/larry.colors.R | 2 fields-14.1/fields/R/mKrig.R | 2 fields-14.1/fields/R/mKrigCheckXY.R | 2 fields-14.1/fields/R/mKrigFastPredict.R | 2 fields-14.1/fields/R/mKrigFastPredictSetup.R | 2 fields-14.1/fields/R/mKrigMLEGrid.R | 2 fields-14.1/fields/R/mKrigMLEJoint.R | 2 fields-14.1/fields/R/mKrigMisc.R | 2 fields-14.1/fields/R/make.surface.grid.R | 6 fields-14.1/fields/R/makeMultiIndex.R | 2 fields-14.1/fields/R/makePredictionGrid.R |only fields-14.1/fields/R/matern.image.cov.R | 2 fields-14.1/fields/R/minimax.crit.R | 2 fields-14.1/fields/R/minitri.R | 2 fields-14.1/fields/R/multWendlandGrid.R | 2 fields-14.1/fields/R/offGridWeights.R | 218 --- fields-14.1/fields/R/offGridWeights1D.R |only fields-14.1/fields/R/offGridWeights2D.R |only fields-14.1/fields/R/parse.grid.list.R | 16 fields-14.1/fields/R/plot.Krig.R | 2 fields-14.1/fields/R/plot.spatialDesign.R | 2 fields-14.1/fields/R/plot.spatialProcess.R | 2 fields-14.1/fields/R/plot.sreg.R | 2 fields-14.1/fields/R/plot.surface.R | 2 fields-14.1/fields/R/plot.vgram.matrix.R | 2 fields-14.1/fields/R/poly.image.R | 2 fields-14.1/fields/R/predict.Krig.R | 2 fields-14.1/fields/R/predict.fastTps.R | 2 fields-14.1/fields/R/predict.interp.surface.R | 2 fields-14.1/fields/R/predict.mKrig.R | 3 fields-14.1/fields/R/predict.sreg.R | 2 fields-14.1/fields/R/predictDerivative.Krig.R | 2 fields-14.1/fields/R/predictSE.Krig.R | 2 fields-14.1/fields/R/predictSE.R | 2 fields-14.1/fields/R/predictSE.mKrig.R | 27 fields-14.1/fields/R/predictSEUsingKrigA.R | 2 fields-14.1/fields/R/predictSurface.Krig.R | 2 fields-14.1/fields/R/predictSurface.family.R | 2 fields-14.1/fields/R/predictSurface.mKrig.R | 41 fields-14.1/fields/R/predictSurfaceSE.R | 2 fields-14.1/fields/R/print.Krig.R | 2 fields-14.1/fields/R/print.mKrig.R | 2 fields-14.1/fields/R/print.mKrig.summary.R | 2 fields-14.1/fields/R/print.spatial.design.R | 2 fields-14.1/fields/R/print.spatialProcess.R | 2 fields-14.1/fields/R/print.spatialProcessSummary.R | 2 fields-14.1/fields/R/print.sreg.R | 2 fields-14.1/fields/R/print.summary.Krig.R | 2 fields-14.1/fields/R/print.summary.sreg.R | 2 fields-14.1/fields/R/print.summarySpatialDesign.R | 2 fields-14.1/fields/R/printGCVWarnings.R | 2 fields-14.1/fields/R/profile.R | 2 fields-14.1/fields/R/profileCI.R | 2 fields-14.1/fields/R/profileMLE.R | 2 fields-14.1/fields/R/qr.q2ty.R | 2 fields-14.1/fields/R/qr.yq2.R | 2 fields-14.1/fields/R/qsreg.family.R | 2 fields-14.1/fields/R/quickPrint.R | 2 fields-14.1/fields/R/quilt.plot.R | 2 fields-14.1/fields/R/rad.cov.R | 2 fields-14.1/fields/R/rad.image.cov.R | 2 fields-14.1/fields/R/rad.simple.cov.R | 2 fields-14.1/fields/R/radbas.constant.R | 2 fields-14.1/fields/R/rat.diet.R | 2 fields-14.1/fields/R/rdist.R | 2 fields-14.1/fields/R/rdist.earth.R | 2 fields-14.1/fields/R/rdist.earth.vec.R | 2 fields-14.1/fields/R/rdist.vec.R | 2 fields-14.1/fields/R/residuals.Krig.R | 2 fields-14.1/fields/R/ribbon.plot.R | 2 fields-14.1/fields/R/set.panel.R | 2 fields-14.1/fields/R/setup.image.smooth.R | 2 fields-14.1/fields/R/setupLegend.R | 2 fields-14.1/fields/R/sim.Krig.R | 6 fields-14.1/fields/R/sim.rf.R | 2 fields-14.1/fields/R/sim.spatialProcess.R | 6 fields-14.1/fields/R/simLocal.spatialProcess.R | 229 +-- fields-14.1/fields/R/simSpatialData.R | 2 fields-14.1/fields/R/smooth.2d.R | 2 fields-14.1/fields/R/snow.colors.R | 2 fields-14.1/fields/R/spam_2lz.R | 2 fields-14.1/fields/R/spatialProcess.R | 2 fields-14.1/fields/R/spatialProcessSetDefaults.R | 2 fields-14.1/fields/R/splint.R | 2 fields-14.1/fields/R/sreg.family.R | 2 fields-14.1/fields/R/stationary.cov.R | 2 fields-14.1/fields/R/stationary.image.cov.R | 2 fields-14.1/fields/R/stationary.taper.cov.R | 2 fields-14.1/fields/R/stats.R | 2 fields-14.1/fields/R/stats.bin.R | 2 fields-14.1/fields/R/summary.Krig.R | 2 fields-14.1/fields/R/summary.mKrig.R | 15 fields-14.1/fields/R/summary.ncdf.R | 2 fields-14.1/fields/R/summary.spatialDesign.R | 2 fields-14.1/fields/R/summary.spatialProcess.R | 2 fields-14.1/fields/R/summary.sreg.R | 2 fields-14.1/fields/R/summaryGCV.Krig.R | 2 fields-14.1/fields/R/summaryGCV.sreg.R | 2 fields-14.1/fields/R/supportsArg.R | 2 fields-14.1/fields/R/surface.family.R | 2 fields-14.1/fields/R/temp.R | 2 fields-14.1/fields/R/test.for.zero.R | 2 fields-14.1/fields/R/tim.colors.R | 2 fields-14.1/fields/R/transformx.R | 2 fields-14.1/fields/R/unrollZGrid.R | 2 fields-14.1/fields/R/unscale.R | 2 fields-14.1/fields/R/vgram.family.R | 22 fields-14.1/fields/R/vgram.matrix.R | 2 fields-14.1/fields/R/wendland.family.R | 2 fields-14.1/fields/R/wendland.image.cov.R | 2 fields-14.1/fields/R/which.max.matrix.R | 2 fields-14.1/fields/R/world.R | 2 fields-14.1/fields/R/xline.R | 2 fields-14.1/fields/R/yline.R | 2 fields-14.1/fields/man/BD.Rd | 3 fields-14.1/fields/man/CO.Rd | 3 fields-14.1/fields/man/CO2.Rd | 3 fields-14.1/fields/man/CovarianceUpper.Rd | 3 fields-14.1/fields/man/Exponential.Rd | 3 fields-14.1/fields/man/FORTRAN.internal.Rd | 3 fields-14.1/fields/man/Krig.Amatrix.Rd | 3 fields-14.1/fields/man/Krig.Rd | 3 fields-14.1/fields/man/Krig.engine.default.Rd | 3 fields-14.1/fields/man/Krig.null.function.Rd | 3 fields-14.1/fields/man/Krig.replicates.Rd | 3 fields-14.1/fields/man/KrigFindLambda.Rd | 3 fields-14.1/fields/man/NorthAmericanRainfall.Rd | 3 fields-14.1/fields/man/QTps.Rd | 3 fields-14.1/fields/man/RCMexample.Rd | 3 fields-14.1/fields/man/RMprecip.Rd | 3 fields-14.1/fields/man/Tps.Rd | 3 fields-14.1/fields/man/US.Rd | 3 fields-14.1/fields/man/US.dat.Rd | 3 fields-14.1/fields/man/Wendland.Rd | 3 fields-14.1/fields/man/WorldBank.Rd | 3 fields-14.1/fields/man/add.image.Rd | 3 fields-14.1/fields/man/arrow.plot.Rd | 3 fields-14.1/fields/man/as.image.Rd | 3 fields-14.1/fields/man/as.surface.Rd | 3 fields-14.1/fields/man/bplot.Rd | 3 fields-14.1/fields/man/bplot.xy.Rd | 3 fields-14.1/fields/man/colorbar.plot.Rd | 3 fields-14.1/fields/man/compactToMat.Rd | 3 fields-14.1/fields/man/cover.design.Rd | 3 fields-14.1/fields/man/drape.plot.Rd | 3 fields-14.1/fields/man/envelopePlot.Rd | 3 fields-14.1/fields/man/exp.cov.Rd | 3 fields-14.1/fields/man/fields-internal.Rd | 3 fields-14.1/fields/man/fields-stuff.Rd | 3 fields-14.1/fields/man/fields.Rd | 165 +- fields-14.1/fields/man/fields.grid.Rd | 3 fields-14.1/fields/man/fields.hints.Rd | 3 fields-14.1/fields/man/fields.tests.Rd | 3 fields-14.1/fields/man/flame.Rd | 3 fields-14.1/fields/man/glacier.Rd | 3 fields-14.1/fields/man/grid.list.Rd | 3 fields-14.1/fields/man/image.cov.Rd | 3 fields-14.1/fields/man/image.plot.Rd | 3 fields-14.1/fields/man/image.smooth.Rd | 3 fields-14.1/fields/man/image2lz.Rd | 3 fields-14.1/fields/man/imagePlot.Rd | 3 fields-14.1/fields/man/interp.surface.Rd | 3 fields-14.1/fields/man/lennon.Rd | 3 fields-14.1/fields/man/mKrig.Rd | 3 fields-14.1/fields/man/mKrigMLE.Rd | 3 fields-14.1/fields/man/minitri.Rd | 3 fields-14.1/fields/man/offGridWeights.Rd | 42 fields-14.1/fields/man/ozone.Rd | 3 fields-14.1/fields/man/ozone2.Rd | 3 fields-14.1/fields/man/plot.Krig.Rd | 3 fields-14.1/fields/man/plot.surface.Rd | 3 fields-14.1/fields/man/poly.image.Rd | 3 fields-14.1/fields/man/predict.Krig.Rd | 3 fields-14.1/fields/man/predictSE.Krig.Rd | 3 fields-14.1/fields/man/predictSurface.Rd | 3 fields-14.1/fields/man/print.Krig.Rd | 3 fields-14.1/fields/man/pushpin.Rd | 3 fields-14.1/fields/man/qsreg.Rd | 3 fields-14.1/fields/man/quilt.plot.Rd | 3 fields-14.1/fields/man/rat.diet.Rd | 3 fields-14.1/fields/man/rdist.Rd | 3 fields-14.1/fields/man/rdist.earth.Rd | 3 fields-14.1/fields/man/registeredC.Rd | 3 fields-14.1/fields/man/ribbon.plot.Rd | 3 fields-14.1/fields/man/set.panel.Rd | 3 fields-14.1/fields/man/sim.Krig.Rd | 157 +- fields-14.1/fields/man/sim.rf.Rd | 3 fields-14.1/fields/man/smooth.2d.Rd | 3 fields-14.1/fields/man/spam2lz.Rd | 3 fields-14.1/fields/man/spatialProcess.Rd | 5 fields-14.1/fields/man/splint.Rd | 3 fields-14.1/fields/man/sreg.Rd | 3 fields-14.1/fields/man/stats.Rd | 3 fields-14.1/fields/man/stats.bin.Rd | 3 fields-14.1/fields/man/summary.Krig.Rd | 3 fields-14.1/fields/man/summary.ncdf.Rd | 3 fields-14.1/fields/man/supportsArg.Rd | 3 fields-14.1/fields/man/surface.Krig.Rd | 3 fields-14.1/fields/man/tim.colors.Rd | 3 fields-14.1/fields/man/transformx.Rd | 3 fields-14.1/fields/man/vgram.Rd | 3 fields-14.1/fields/man/vgram.matrix.Rd | 3 fields-14.1/fields/man/world.Rd | 3 fields-14.1/fields/man/xline.Rd | 3 fields-14.1/fields/man/yline.Rd | 3 fields-14.1/fields/tests/Krig.Z.test.R | 3 fields-14.1/fields/tests/Krig.Z.test.Rout.save | 9 fields-14.1/fields/tests/Krig.se.W.R | 3 fields-14.1/fields/tests/Krig.se.W.Rout.save | 9 fields-14.1/fields/tests/Krig.se.grid.test.R | 3 fields-14.1/fields/tests/Krig.se.grid.test.Rout.save | 9 fields-14.1/fields/tests/Krig.se.test.R | 61 fields-14.1/fields/tests/Krig.se.test.Rout.save | 69 - fields-14.1/fields/tests/Krig.test.R | 3 fields-14.1/fields/tests/Krig.test.Rout.save | 9 fields-14.1/fields/tests/Krig.test.W.R | 3 fields-14.1/fields/tests/Krig.test.W.Rout.save | 9 fields-14.1/fields/tests/KrigGCVREML.test.R | 3 fields-14.1/fields/tests/KrigGCVREML.test.Rout.save | 9 fields-14.1/fields/tests/Likelihood.test.R | 3 fields-14.1/fields/tests/Likelihood.test.Rout.save | 9 fields-14.1/fields/tests/SEFixedParameters.R | 3 fields-14.1/fields/tests/SEFixedParameters.Rout.save | 9 fields-14.1/fields/tests/Tps.test.R | 3 fields-14.1/fields/tests/Tps.test.Rout.save | 9 fields-14.1/fields/tests/Wend.test.R | 3 fields-14.1/fields/tests/Wend.test.Rout.save | 9 fields-14.1/fields/tests/cov.test.R | 3 fields-14.1/fields/tests/cov.test.Rout.save | 9 fields-14.1/fields/tests/cov.test2.R | 3 fields-14.1/fields/tests/cov.test2.Rout.save | 9 fields-14.1/fields/tests/derivative.test.R | 3 fields-14.1/fields/tests/derivative.test.Rout.save | 9 fields-14.1/fields/tests/diag.multiply.test.R | 3 fields-14.1/fields/tests/diag.multiply.test.Rout.save | 9 fields-14.1/fields/tests/evlpoly.test.R | 3 fields-14.1/fields/tests/evlpoly.test.Rout.save | 9 fields-14.1/fields/tests/fastTpsPredict.test.R | 3 fields-14.1/fields/tests/fastTpsPredict.test.Rout.save | 9 fields-14.1/fields/tests/mKrig.Z.R | 3 fields-14.1/fields/tests/mKrig.Z.Rout.save | 9 fields-14.1/fields/tests/mKrig.parameters.test.R | 3 fields-14.1/fields/tests/mKrig.parameters.test.Rout.save | 9 fields-14.1/fields/tests/mKrig.se.test.R | 3 fields-14.1/fields/tests/mKrig.se.test.Rout.save | 9 fields-14.1/fields/tests/mKrig.test.R | 3 fields-14.1/fields/tests/mKrig.test.Rout.save | 9 fields-14.1/fields/tests/mKrigMLETest.R | 3 fields-14.1/fields/tests/mKrigMLETest.Rout.save | 9 fields-14.1/fields/tests/mKrigREMLTest.R | 3 fields-14.1/fields/tests/mKrigREMLTest.Rout.save | 9 fields-14.1/fields/tests/misc.test.R | 3 fields-14.1/fields/tests/misc.test.Rout.save | 9 fields-14.1/fields/tests/offGridWeights.test.R | 3 fields-14.1/fields/tests/offGridWeights.test.Rout.save | 9 fields-14.1/fields/tests/offGridWeightsNEW.test.Rout.save | 9 fields-14.1/fields/tests/offGridWeightsNew.test.R | 3 fields-14.1/fields/tests/spam.test.R | 3 fields-14.1/fields/tests/spam.test.Rout.save | 9 fields-14.1/fields/tests/sreg.test.R | 3 fields-14.1/fields/tests/sreg.test.Rout.save | 9 fields-14.1/fields/tests/vgram.test.R | 3 fields-14.1/fields/tests/vgram.test.Rout.save | 9 fields-14.1/fields/tests/vgram2.test.R |only fields-14.1/fields/tests/vgram2.test.Rout.save |only 345 files changed, 1644 insertions(+), 1361 deletions(-)
Title: Wilcoxon Rank Tests for Clustered Data
Description: Non-parametric tests (Wilcoxon rank sum test and Wilcoxon signed rank test)
for clustered data documented in
Jiang et. al (2020) <doi:10.18637/jss.v096.i06>.
Author: Wenjie Wang [cre, ctb] ,
Yujing Jiang [aut],
Mei-Ling Ting Lee [ctb],
Jun Yan [ctb]
Maintainer: Wenjie Wang <wang@wwenjie.org>
Diff between clusrank versions 1.0-2 dated 2022-01-23 and 1.0-3 dated 2022-08-12
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 1 + R/clusWilcox.R | 12 +++++++----- man/clusWilcox.test.Rd | 6 +++--- 5 files changed, 19 insertions(+), 16 deletions(-)
Title: Powerful Test for Survival Data under Non-Proportional Hazards
Description: An omnibus test of change-point Cox regression models to improve the statistical power of detecting signals of non-proportional hazards patterns. The technical details can be found in Hong Zhang, Qing Li, Devan Mehrotra and Judong Shen (2021) <arXiv:2101.00059>. Extensive simulation studies demonstrate that, compared to existing tests under non-proportional hazards, the proposed CauchyCP test 1) controls the type I error better at small alpha levels; 2) increases the power of detecting time-varying effects; and 3) is more computationally efficient.
Author: Hong Zhang
Maintainer: Hong Zhang <hzhang@wpi.edu>
Diff between CauchyCP versions 0.1.0 dated 2021-01-08 and 0.1.1 dated 2022-08-12
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/CauchyCP.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-23 1.0.1
2017-04-20 0.9.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-19 0.7.1
2016-03-08 0.6.2
2016-01-19 0.6.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-25 1.20
2018-09-13 1.19
2017-02-08 1-00.17
2017-01-24 1-00.16
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-08 1.0.2
2021-04-16 1.0.1
2020-12-02 1.0.0
2020-06-15 0.2.1
2019-12-05 0.1.3
2018-12-01 0.1.2
2018-08-01 0.1.1
2018-02-23 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-02 1.5
2019-07-11 1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-11 1.0.1
2019-10-01 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-06 0.2
2020-05-28 0.1-1
2020-01-31 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-29 1.5
2015-08-19 1.4
2015-02-25 1.3
2014-03-04 1.2
2013-11-27 1.1
2013-09-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-20 1.3.1
2013-10-25 1.2
2012-04-17 1.1.1
2012-03-29 1.0
2011-09-23 0.2
2011-09-06 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-13 1.0
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2022-02-08 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-11 0.1.1
2021-09-15 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-30 0.3
2015-10-17 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-28 4.5.1
2021-07-13 4.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-06 1.0.0