Title: Estimation of Model-Based Predictions, Contrasts and Means
Description: Implements a general interface for model-based estimations
for a wide variety of models (see list of supported models using the
function 'insight::supported_models()'), used in the computation of
marginal means, contrast analysis and predictions.
Author: Dominique Makowski [aut, cre] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut]
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between modelbased versions 0.8.1 dated 2022-05-30 and 0.8.5 dated 2022-08-17
modelbased-0.8.1/modelbased/tests/spelling.R |only modelbased-0.8.5/modelbased/DESCRIPTION | 25 modelbased-0.8.5/modelbased/MD5 | 151 - modelbased-0.8.5/modelbased/NAMESPACE | 161 - modelbased-0.8.5/modelbased/NEWS.md | 188 - modelbased-0.8.5/modelbased/R/describe_nonlinear.R | 250 +- modelbased-0.8.5/modelbased/R/estimate_contrasts.R | 287 +- modelbased-0.8.5/modelbased/R/estimate_grouplevel.R | 216 +- modelbased-0.8.5/modelbased/R/estimate_means.R | 372 +-- modelbased-0.8.5/modelbased/R/estimate_predicted.R | 810 +++---- modelbased-0.8.5/modelbased/R/estimate_slopes.R | 500 ++-- modelbased-0.8.5/modelbased/R/get_emcontrasts.R | 196 - modelbased-0.8.5/modelbased/R/get_emmeans.R | 423 +-- modelbased-0.8.5/modelbased/R/get_emtrends.R | 176 - modelbased-0.8.5/modelbased/R/get_marginaleffects.R | 97 modelbased-0.8.5/modelbased/R/plot.R | 44 modelbased-0.8.5/modelbased/R/print.R | 123 - modelbased-0.8.5/modelbased/R/print_md.R |only modelbased-0.8.5/modelbased/R/reexports.R | 22 modelbased-0.8.5/modelbased/R/reshape_grouplevel.R | 176 - modelbased-0.8.5/modelbased/R/smoothing.R | 164 - modelbased-0.8.5/modelbased/R/standardize_methods.R | 194 - modelbased-0.8.5/modelbased/R/utils.R |only modelbased-0.8.5/modelbased/R/visualisation_matrix.R | 200 - modelbased-0.8.5/modelbased/R/visualisation_recipe.estimate_grouplevel.R | 263 +- modelbased-0.8.5/modelbased/R/visualisation_recipe.estimate_means.R | 463 ++-- modelbased-0.8.5/modelbased/R/visualisation_recipe.estimate_predicted.R | 957 +++++---- modelbased-0.8.5/modelbased/R/visualisation_recipe.estimate_slopes.R | 457 ++-- modelbased-0.8.5/modelbased/R/zero_crossings.R | 162 - modelbased-0.8.5/modelbased/README.md | 1063 +++++----- modelbased-0.8.5/modelbased/build/vignette.rds |binary modelbased-0.8.5/modelbased/inst/CITATION | 22 modelbased-0.8.5/modelbased/inst/WORDLIST | 148 - modelbased-0.8.5/modelbased/inst/doc/overview_of_vignettes.R | 22 modelbased-0.8.5/modelbased/inst/doc/overview_of_vignettes.Rmd | 86 modelbased-0.8.5/modelbased/inst/doc/overview_of_vignettes.html | 586 ++--- modelbased-0.8.5/modelbased/man/describe_nonlinear.Rd | 92 modelbased-0.8.5/modelbased/man/dot-uniroot.all.Rd | 42 modelbased-0.8.5/modelbased/man/estimate_contrasts.Rd | 347 +-- modelbased-0.8.5/modelbased/man/estimate_expectation.Rd | 486 ++-- modelbased-0.8.5/modelbased/man/estimate_grouplevel.Rd | 140 - modelbased-0.8.5/modelbased/man/estimate_means.Rd | 281 +- modelbased-0.8.5/modelbased/man/estimate_slopes.Rd | 256 +- modelbased-0.8.5/modelbased/man/figures/unnamed-chunk-10-1.png |binary modelbased-0.8.5/modelbased/man/figures/unnamed-chunk-11-1.png |binary modelbased-0.8.5/modelbased/man/figures/unnamed-chunk-12-1.png |binary modelbased-0.8.5/modelbased/man/figures/unnamed-chunk-14-1.png |binary modelbased-0.8.5/modelbased/man/figures/unnamed-chunk-15-1.png |binary modelbased-0.8.5/modelbased/man/figures/unnamed-chunk-16-1.png |binary modelbased-0.8.5/modelbased/man/figures/unnamed-chunk-17-1.png |binary modelbased-0.8.5/modelbased/man/figures/unnamed-chunk-3-1.png |binary modelbased-0.8.5/modelbased/man/figures/unnamed-chunk-4-1.png |binary modelbased-0.8.5/modelbased/man/figures/unnamed-chunk-6-1.png |binary modelbased-0.8.5/modelbased/man/figures/unnamed-chunk-8-1.png |binary modelbased-0.8.5/modelbased/man/figures/unnamed-chunk-9-1.png |binary modelbased-0.8.5/modelbased/man/find_inversions.Rd | 44 modelbased-0.8.5/modelbased/man/get_emmeans.Rd | 333 +-- modelbased-0.8.5/modelbased/man/get_marginaleffects.Rd | 74 modelbased-0.8.5/modelbased/man/reexports.Rd | 39 modelbased-0.8.5/modelbased/man/smoothing.Rd | 76 modelbased-0.8.5/modelbased/man/visualisation_matrix.Rd | 229 +- modelbased-0.8.5/modelbased/man/visualisation_recipe.estimate_predicted.Rd | 566 ++--- modelbased-0.8.5/modelbased/man/zero_crossings.Rd | 52 modelbased-0.8.5/modelbased/tests/testthat.R | 40 modelbased-0.8.5/modelbased/tests/testthat/test-attributes_visualisation.R | 80 modelbased-0.8.5/modelbased/tests/testthat/test-describe_nonlinear.R | 40 modelbased-0.8.5/modelbased/tests/testthat/test-estimate_contrasts.R | 333 +-- modelbased-0.8.5/modelbased/tests/testthat/test-estimate_expectation.R | 124 - modelbased-0.8.5/modelbased/tests/testthat/test-estimate_grouplevel.R | 101 modelbased-0.8.5/modelbased/tests/testthat/test-estimate_means.R | 292 +- modelbased-0.8.5/modelbased/tests/testthat/test-estimate_predicted.R | 285 +- modelbased-0.8.5/modelbased/tests/testthat/test-estimate_slopes.R | 52 modelbased-0.8.5/modelbased/tests/testthat/test-get_marginaleffects.R | 18 modelbased-0.8.5/modelbased/tests/testthat/test-glmmTMB.R | 125 - modelbased-0.8.5/modelbased/tests/testthat/test-mgcv.R | 132 - modelbased-0.8.5/modelbased/tests/testthat/test-signal.R | 22 modelbased-0.8.5/modelbased/vignettes/bibliography.bib | 24 modelbased-0.8.5/modelbased/vignettes/overview_of_vignettes.Rmd | 86 78 files changed, 7015 insertions(+), 6800 deletions(-)
Title: Simulations for Response Adaptive Block Randomization Design
Description: Conduct simulations of the Response Adaptive Block Randomization (RABR) design to evaluate its type I error rate, power and operating characteristics for binary and continuous endpoints. For more details of the proposed method, please refer to Zhan et al. (2021) <doi:10.1002/sim.9104>.
Author: Tianyu Zhan [aut, cre]
Maintainer: Tianyu Zhan <tianyu.zhan.stats@gmail.com>
Diff between RABR versions 0.1.0 dated 2021-05-26 and 0.1.1 dated 2022-08-17
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/RABRbinary.R | 6 +++--- R/RABRcontinuous.R | 4 ++-- build/vignette.rds |binary inst/doc/RABR-vignette.html | 3 ++- man/RABRbinary.Rd | 6 +++--- man/RABRcontinuous.Rd | 4 ++-- tests/testthat.R | 8 ++++++++ 10 files changed, 38 insertions(+), 25 deletions(-)
Title: Clinical Graphs and Tables Adhering to Graphical Principles
Description: To enable fit-for-purpose, reusable clinical and medical
research focused visualizations and tables with sensible defaults and
based on graphical principles as described in: "Vandemeulebroecke et
al. (2018)" <doi:10.1002/pst.1912>, "Vandemeulebroecke et al. (2019)"
<doi:10.1002/psp4.12455>, and "Morris et al. (2019)"
<doi:10.1136/bmjopen-2019-030215>.
Author: Mark Baillie [aut, cre, cph],
Diego Saldana [aut],
Charlotta Fruechtenicht [aut],
Marc Vandemeulebroecke [aut],
Thanos Siadimas [aut],
Pawel Kawski [aut],
Steven Haesendonckx [aut],
James Black [aut],
Pelagia Alexandra Papadopoulou [aut],
Tim Treis [ [...truncated...]
Maintainer: Mark Baillie <bailliem@gmail.com>
Diff between visR versions 0.3.0 dated 2022-06-24 and 0.3.1 dated 2022-08-17
DESCRIPTION | 12 LICENSE | 4 MD5 | 259 NAMESPACE | 138 NEWS.md | 6 R/Surv_CNSR.R | 168 R/add_CI.R | 235 R/add_CNSR.R | 200 R/add_annotation.R | 326 R/add_highlight.R | 338 R/add_quantiles.R | 376 R/add_risktable.R | 382 R/apply_attrition.R | 78 R/apply_theme.R | 632 R/data.R | 92 R/define_theme.R | 266 R/estimate_KM.R | 438 R/estimate_cuminc.R | 236 R/get_COX_HR.R | 146 R/get_attrition.R | 224 R/get_pvalue.R | 324 R/get_quantile.R | 160 R/get_risktable.R | 746 - R/get_summary.R | 210 R/get_tableone.R | 254 R/global.R | 138 R/reexports.R | 18 R/render.R | 998 - R/stat_stepribbon.R |only R/tableone.R | 272 R/tidyme.R | 222 R/utils_general.R | 34 R/utils_pipe.R | 102 R/utils_table.R | 278 R/utils_visr.R | 1184 - R/visR-package.R | 16 R/visr.R | 1114 - build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 193 inst/doc/CDISC_ADaM.R | 116 inst/doc/CDISC_ADaM.Rmd | 180 inst/doc/CDISC_ADaM.html | 2676 +-- inst/doc/Consort_flow_diagram.R | 82 inst/doc/Consort_flow_diagram.Rmd | 180 inst/doc/Consort_flow_diagram.html | 830 - inst/doc/Styling_KM_plots.R | 160 inst/doc/Styling_KM_plots.Rmd | 292 inst/doc/Styling_KM_plots.html | 1010 - inst/doc/Time_to_event_analysis.R | 284 inst/doc/Time_to_event_analysis.Rmd | 450 inst/doc/Time_to_event_analysis.html |14232 ++++++++++---------- man/Surv_CNSR.Rd | 130 man/add_CI.Rd | 120 man/add_CNSR.Rd | 108 man/add_annotation.Rd | 204 man/add_highlight.Rd | 86 man/add_quantiles.Rd | 140 man/add_risktable.Rd | 230 man/adtte.Rd | 106 man/align_plots.Rd | 92 man/apply_attrition.Rd | 62 man/apply_theme.Rd | 112 man/brca_cohort.Rd | 32 man/define_theme.Rd | 122 man/dot-convert_alpha.Rd | 40 man/dot-get_alpha_from_hex_colour.Rd | 46 man/dot-get_strata.Rd | 36 man/dot-replace_hex_alpha.Rd | 40 man/estimate_KM.Rd | 218 man/estimate_cuminc.Rd | 112 man/figures/README-example-1.png |binary man/figures/README-example-1.svg | 2958 ++-- man/get_COX_HR.Rd | 96 man/get_attrition.Rd | 106 man/get_pvalue.Rd | 120 man/get_quantile.Rd | 102 man/get_risktable.Rd | 140 man/get_summary.Rd | 78 man/get_tableone.Rd | 206 man/legendopts.Rd | 38 man/reexports.Rd | 38 man/render.Rd | 88 man/stat_stepribbon.Rd |only man/summarize_long.Rd | 62 man/summarize_short.Rd | 74 man/tableone.Rd | 266 man/the_lhs.Rd | 44 man/tidyme.Rd | 92 man/visR-Global.Rd | 20 man/visR-package.Rd | 90 man/visr.Rd | 378 tests/figs/deps.txt | 6 tests/spelling.R | 6 tests/testthat.R | 12 tests/testthat/Rplots.pdf |binary tests/testthat/helper.R | 436 tests/testthat/test-Surv_CNSR.R | 211 tests/testthat/test-add_CI.R | 432 tests/testthat/test-add_CNSR.R | 436 tests/testthat/test-add_annotation.R | 848 - tests/testthat/test-add_highlight.R | 754 - tests/testthat/test-add_quantiles.R | 516 tests/testthat/test-add_risktable.R | 438 tests/testthat/test-apply_attrition.R | 504 tests/testthat/test-apply_theme.R | 1188 - tests/testthat/test-define_theme.R | 392 tests/testthat/test-estimate_KM.R | 1044 - tests/testthat/test-estimate_cuminc.R | 440 tests/testthat/test-get_COX_HR.R | 164 tests/testthat/test-get_attrition.R | 1022 - tests/testthat/test-get_pvalue.R | 566 tests/testthat/test-get_quantile.R | 348 tests/testthat/test-get_risktable.R | 1212 - tests/testthat/test-get_summary.R | 486 tests/testthat/test-get_tableone.R | 380 tests/testthat/test-render.R | 1984 +- tests/testthat/test-stat_stepribbon.R |only tests/testthat/test-tableone.R | 226 tests/testthat/test-tidyme.R | 396 tests/testthat/test-utils_general.R | 76 tests/testthat/test-utils_table.R | 364 tests/testthat/test-utils_visR.R | 878 - tests/testthat/test-visr_attrition.R | 984 - tests/testthat/test-visr_survfit.R | 1044 - tests/testthat/test-watchdog_CRAN.R | 390 tests/testthat/test-watchdog_testfiles.R | 200 vignettes/CDISC_ADaM.Rmd | 180 vignettes/Consort_flow_diagram.Rmd | 180 vignettes/Styling_KM_plots.Rmd | 292 vignettes/Time_to_event_analysis.Rmd | 450 vignettes/interactive_tte_tutorial/tte_tutorial.Rmd | 1052 - 132 files changed, 29454 insertions(+), 29426 deletions(-)
Title: Tidy Interface to 'data.table'
Description: A tidy interface to 'data.table' that is 'rlang' compatible,
giving users the speed of 'data.table' with the clean syntax of the tidyverse.
Author: Mark Fairbanks [aut, cre],
Abdessabour Moutik [ctb],
Matt Carlson [ctb],
Ivan Leung [ctb],
Ross Kennedy [ctb]
Maintainer: Mark Fairbanks <mark.t.fairbanks@gmail.com>
Diff between tidytable versions 0.8.0 dated 2022-06-11 and 0.8.1 dated 2022-08-17
tidytable-0.8.0/tidytable/R/ifelse.R |only tidytable-0.8.0/tidytable/R/notin.R |only tidytable-0.8.0/tidytable/man/grapes-notin-grapes.Rd |only tidytable-0.8.0/tidytable/tests/testthat/test-ifelse.R |only tidytable-0.8.0/tidytable/tests/testthat/test-notin.R |only tidytable-0.8.1/tidytable/DESCRIPTION | 8 tidytable-0.8.1/tidytable/MD5 | 130 - tidytable-0.8.1/tidytable/NAMESPACE | 3 tidytable-0.8.1/tidytable/NEWS.md | 30 tidytable-0.8.1/tidytable/R/arrange.R | 4 tidytable-0.8.1/tidytable/R/arrange_across.R | 4 tidytable-0.8.1/tidytable/R/as_tidytable.R | 10 tidytable-0.8.1/tidytable/R/case.R | 1 tidytable-0.8.1/tidytable/R/case_when.R | 38 tidytable-0.8.1/tidytable/R/coalesce.R | 18 tidytable-0.8.1/tidytable/R/consecutive_id.R |only tidytable-0.8.1/tidytable/R/count.R | 3 tidytable-0.8.1/tidytable/R/dt.R | 4 tidytable-0.8.1/tidytable/R/expand.R | 10 tidytable-0.8.1/tidytable/R/extract.R | 8 tidytable-0.8.1/tidytable/R/fill.R | 2 tidytable-0.8.1/tidytable/R/filter.R | 16 tidytable-0.8.1/tidytable/R/first-last-nth.R | 28 tidytable-0.8.1/tidytable/R/get_dummies.R | 43 tidytable-0.8.1/tidytable/R/if_else.R |only tidytable-0.8.1/tidytable/R/in-notin.R |only tidytable-0.8.1/tidytable/R/join.R | 6 tidytable-0.8.1/tidytable/R/mutate.R | 12 tidytable-0.8.1/tidytable/R/mutate_across.R | 5 tidytable-0.8.1/tidytable/R/na_if.R | 2 tidytable-0.8.1/tidytable/R/pivot_longer.R | 4 tidytable-0.8.1/tidytable/R/pivot_wider.R | 2 tidytable-0.8.1/tidytable/R/relocate.R | 17 tidytable-0.8.1/tidytable/R/replace_na.R | 2 tidytable-0.8.1/tidytable/R/separate.R | 7 tidytable-0.8.1/tidytable/R/separate_rows.R | 4 tidytable-0.8.1/tidytable/R/slice.R | 145 - tidytable-0.8.1/tidytable/R/summarize.R | 8 tidytable-0.8.1/tidytable/R/summarize_across.R | 5 tidytable-0.8.1/tidytable/R/unnest.R | 59 tidytable-0.8.1/tidytable/R/utils-across.R | 4 tidytable-0.8.1/tidytable/R/utils-fast_copy.R | 32 tidytable-0.8.1/tidytable/R/utils-general.R | 43 tidytable-0.8.1/tidytable/R/utils-prep_exprs.R | 20 tidytable-0.8.1/tidytable/README.md | 1 tidytable-0.8.1/tidytable/man/arrange_across..Rd | 5 tidytable-0.8.1/tidytable/man/case_when..Rd | 8 tidytable-0.8.1/tidytable/man/coalesce..Rd | 8 tidytable-0.8.1/tidytable/man/consecutive_id..Rd |only tidytable-0.8.1/tidytable/man/first..Rd | 6 tidytable-0.8.1/tidytable/man/get_dummies..Rd | 23 tidytable-0.8.1/tidytable/man/if_else..Rd |only tidytable-0.8.1/tidytable/man/ifelse..Rd | 11 tidytable-0.8.1/tidytable/man/in-notin.Rd |only tidytable-0.8.1/tidytable/man/mutate_across..Rd | 4 tidytable-0.8.1/tidytable/man/slice..Rd | 7 tidytable-0.8.1/tidytable/man/summarize_across..Rd | 4 tidytable-0.8.1/tidytable/tests/testthat/test-across.R | 10 tidytable-0.8.1/tidytable/tests/testthat/test-arrange.R | 47 tidytable-0.8.1/tidytable/tests/testthat/test-as_tidytable.R | 12 tidytable-0.8.1/tidytable/tests/testthat/test-case_when.R | 40 tidytable-0.8.1/tidytable/tests/testthat/test-coalesce.R | 10 tidytable-0.8.1/tidytable/tests/testthat/test-consecutive_id.R |only tidytable-0.8.1/tidytable/tests/testthat/test-count.R | 3 tidytable-0.8.1/tidytable/tests/testthat/test-deprec-across.R | 777 +++++----- tidytable-0.8.1/tidytable/tests/testthat/test-expand.R | 13 tidytable-0.8.1/tidytable/tests/testthat/test-first-last-nth.R | 7 tidytable-0.8.1/tidytable/tests/testthat/test-if_else.R |only tidytable-0.8.1/tidytable/tests/testthat/test-in-notin.R |only tidytable-0.8.1/tidytable/tests/testthat/test-mutate.R | 19 tidytable-0.8.1/tidytable/tests/testthat/test-relocate.R | 6 tidytable-0.8.1/tidytable/tests/testthat/test-slice.R | 42 tidytable-0.8.1/tidytable/tests/testthat/test-unnest.R | 5 73 files changed, 1009 insertions(+), 796 deletions(-)
Title: R Tools for Text Matrices, Embeddings, and Networks
Description: This is a collection of functions optimized for working with
with various kinds of text matrices. Focusing on
the text matrix as the primary object - represented
either as a base R dense matrix or a 'Matrix' package sparse
matrix - allows for a consistent and intuitive interface
that stays close to the underlying mathematical foundation
of computational text analysis. In particular, the package
includes functions for working with word embeddings,
text networks, and document-term matrices. Methods developed in
Stoltz and Taylor (2019) <doi:10.1007/s42001-019-00048-6>,
Taylor and Stoltz (2020) <doi:10.1007/s42001-020-00075-8>,
Taylor and Stoltz (2020) <doi:10.15195/v7.a23>, and
Stoltz and Taylor (2021) <doi:10.1016/j.poetic.2021.101567>.
Author: Dustin Stoltz [aut, cre] ,
Marshall Taylor [aut]
Maintainer: Dustin Stoltz <maintainers@textmapping.com>
Diff between text2map versions 0.1.5 dated 2022-05-23 and 0.1.6 dated 2022-08-17
DESCRIPTION | 10 MD5 | 63 - NAMESPACE | 6 NEWS.md | 9 R/CMDist.R | 626 +++++----- R/utils-dtm.R | 1553 +++++++++++++-------------- R/utils-embedding.R | 803 +++++-------- R/utils-textnets.R |only R/utils.R | 8 R/zzz.R |only README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/CMDist-concept-movers-distance.R | 8 inst/doc/CMDist-concept-movers-distance.Rmd | 40 inst/doc/CMDist-concept-movers-distance.html | 331 +---- inst/doc/concept-class-analysis.Rmd | 18 inst/doc/concept-class-analysis.html | 99 - man/CMDist.Rd | 8 man/doc_centrality.Rd |only man/doc_similarity.Rd |only man/dtm_builder.Rd | 68 - man/dtm_stopper.Rd | 55 man/find_transformation.Rd | 12 man/get_direction.Rd | 8 man/get_regions.Rd | 8 man/seq_builder.Rd | 6 man/text2map-package.Rd | 4 tests/testthat/helper-data.R | 30 tests/testthat/test-utils-dtm.R | 393 +++--- tests/testthat/test-utils-embeddings.R | 33 tests/testthat/test-utils-stopper.R | 40 tests/testthat/test-utils-textnets.R |only vignettes/CMDist-concept-movers-distance.Rmd | 40 vignettes/concept-class-analysis.Rmd | 18 35 files changed, 2135 insertions(+), 2164 deletions(-)
Title: Basic Functions to Statistical Methods Course
Description: Basic statistical methods with some modifications for the course Statistical Methods at Federal University of Bahia (Brazil). All methods in this packages are explained in the text book of Montgomery and Runger (2010) <ISBN: 978-1-119-74635-5>.
Author: Gilberto Sassi [aut, cre],
Carolina Costa Mota Paraiba [aut]
Maintainer: Gilberto Sassi <sassi.pereira.gilberto@gmail.com>
Diff between statBasics versions 0.1.0 dated 2022-03-16 and 0.2.0 dated 2022-08-17
statBasics-0.1.0/statBasics/R/ci_bern.R |only statBasics-0.1.0/statBasics/R/ci_exp.R |only statBasics-0.1.0/statBasics/R/ci_general.R |only statBasics-0.1.0/statBasics/R/ci_norm.R |only statBasics-0.1.0/statBasics/man/ci_bern.Rd |only statBasics-0.1.0/statBasics/man/ci_exp.Rd |only statBasics-0.1.0/statBasics/man/ci_general.Rd |only statBasics-0.1.0/statBasics/man/ci_norm.Rd |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_bern_success_0_1.R |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_bern_success_0_1_NA.R |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_bern_success_number_success.R |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_bern_success_vector.R |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_bern_success_vector_NA.R |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_chisq_sd.R |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_chisq_sd_NA.R |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_exp.R |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_exp_NA.R |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_mean.R |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_mean_NA.R |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_ttest_mean.R |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_ttest_mean_NA.R |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_ztest_mean.R |only statBasics-0.1.0/statBasics/tests/testthat/test_ci_ztest_mean_NA.R |only statBasics-0.2.0/statBasics/DESCRIPTION | 17 statBasics-0.2.0/statBasics/MD5 | 125 ++- statBasics-0.2.0/statBasics/NAMESPACE | 13 statBasics-0.2.0/statBasics/R/ci_1pop_bern.R |only statBasics-0.2.0/statBasics/R/ci_1pop_exp.R |only statBasics-0.2.0/statBasics/R/ci_1pop_general.R |only statBasics-0.2.0/statBasics/R/ci_1pop_norm.R |only statBasics-0.2.0/statBasics/R/ci_2pop_bern.R |only statBasics-0.2.0/statBasics/R/ci_2pop_norm.R |only statBasics-0.2.0/statBasics/R/ht_1pop_mean.R | 240 +++--- statBasics-0.2.0/statBasics/R/ht_1pop_prop.R | 212 +++--- statBasics-0.2.0/statBasics/R/ht_1pop_var.R | 140 ++-- statBasics-0.2.0/statBasics/R/ht_2pop_mean.R |only statBasics-0.2.0/statBasics/R/ht_2pop_prop.R |only statBasics-0.2.0/statBasics/R/ht_2pop_var.R |only statBasics-0.2.0/statBasics/README.md | 344 +++++++--- statBasics-0.2.0/statBasics/man/ci_1pop_bern.Rd |only statBasics-0.2.0/statBasics/man/ci_1pop_exp.Rd |only statBasics-0.2.0/statBasics/man/ci_1pop_general.Rd |only statBasics-0.2.0/statBasics/man/ci_1pop_norm.Rd |only statBasics-0.2.0/statBasics/man/ci_2pop_bern.Rd |only statBasics-0.2.0/statBasics/man/ci_2pop_norm.Rd |only statBasics-0.2.0/statBasics/man/ht_1pop_mean.Rd | 20 statBasics-0.2.0/statBasics/man/ht_1pop_prop.Rd | 35 - statBasics-0.2.0/statBasics/man/ht_1pop_var.Rd | 20 statBasics-0.2.0/statBasics/man/ht_2pop_mean.Rd |only statBasics-0.2.0/statBasics/man/ht_2pop_prop.Rd |only statBasics-0.2.0/statBasics/man/ht_2pop_var.Rd |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_bern_success_0_1.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_bern_success_0_1_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_bern_success_number_success.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_bern_success_vector.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_bern_success_vector_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_chisq_sd.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_chisq_sd_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_exp.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_exp_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_mean.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_mean_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_ttest_mean.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_ttest_mean_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_ztest_mean.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_1pop_ztest_mean_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_2pop_bern_success_0_1.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_2pop_bern_success_0_1_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_2pop_bern_success_scalar.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_2pop_mean_var_known.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_2pop_mean_var_unknown_different.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_2pop_mean_var_unknown_equal.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ci_2pop_var.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_1pop_mean_decision_h0.R | 24 statBasics-0.2.0/statBasics/tests/testthat/test_ht_1pop_mean_decision_h0_NA.R | 24 statBasics-0.2.0/statBasics/tests/testthat/test_ht_1pop_mean_decision_h1.R | 24 statBasics-0.2.0/statBasics/tests/testthat/test_ht_1pop_mean_decision_h1_NA.R | 24 statBasics-0.2.0/statBasics/tests/testthat/test_ht_1pop_prop_number_success.R | 2 statBasics-0.2.0/statBasics/tests/testthat/test_ht_1pop_prop_success_vector.R | 2 statBasics-0.2.0/statBasics/tests/testthat/test_ht_1pop_prop_success_vector_NA.R | 2 statBasics-0.2.0/statBasics/tests/testthat/test_ht_1pop_prop_vector_0_1.R | 2 statBasics-0.2.0/statBasics/tests/testthat/test_ht_1pop_prop_vector_0_1_NA.R | 2 statBasics-0.2.0/statBasics/tests/testthat/test_ht_1pop_var.R | 4 statBasics-0.2.0/statBasics/tests/testthat/test_ht_1pop_var_NA.R | 4 statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_mean_diff_unknown_equal_variances_decision_h0.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_mean_diff_unknown_equal_variances_decision_h0_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_mean_diff_unknown_equal_variances_decision_h1.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_mean_diff_unknown_equal_variances_decision_h1_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_mean_diff_unknown_variances_diff_decision_h0.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_mean_diff_unknown_variances_diff_decision_h0_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_mean_diff_unknown_variances_diff_decision_h1.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_mean_diff_unknown_variances_diff_decision_h1_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_mean_difference_known_variances_decision_h0.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_mean_difference_known_variances_decision_h0_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_mean_difference_known_variances_decision_h1.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_mean_difference_known_variances_decision_h1_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_prop_number_sucess_H0.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_prop_number_sucess_H1.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_prop_vector_0_1_H0.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_prop_vector_0_1_H0_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_prop_vector_0_1_H1.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_prop_vector_0_1_H1_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_var_h0.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_var_h0_NA.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_var_h1.R |only statBasics-0.2.0/statBasics/tests/testthat/test_ht_2pop_var_h1_NA.R |only 106 files changed, 760 insertions(+), 520 deletions(-)
Title: Summarizes Provenance Related to Inputs and Outputs of a Script
or Console Commands
Description: Reads the provenance collected by the 'rdtLite' or 'rdt' packages,
or other tools providing compatible PROV JSON output, created by the
execution of a script or a console session, and provides a human-readable
summary identifying the input and output files, the scripts used (if any),
errors and warnings produced, and the environment in which it was executed.
It can also optionally package all the files into a zip file. The exact
format of the PROV JSON file created by 'rdtLite' and 'rdt' is described
in <https://github.com/End-to-end-provenance/ExtendedProvJson>. More
information about 'rdtLite' and associated tools is available at
<https://github.com/End-to-end-provenance/> and Lerner, Boose, and Perez
(2018), Using Introspection to Collect Provenance in R, Informatics,
<doi: 10.3390/informatics5010012>.
Author: Emery Boose [cre],
Barbara Lerner [aut],
President and Fellows of Harvard College [cph],
Trustees of Mount Holyoke College [cph]
Maintainer: Emery Boose <boose@fas.harvard.edu>
Diff between provSummarizeR versions 1.5 dated 2022-06-24 and 1.5.1 dated 2022-08-17
DESCRIPTION | 34 +- MD5 | 36 +- NEWS.md | 4 R/provSummarizeR.R | 107 +++++-- README.md | 252 +++++++++++++--- build |only inst/doc |only inst/testdata/console.json | 310 +++++++++++++++++++- inst/testdata/files.json | 333 ++++++++++++++++++++-- inst/testdata/no-details.json | 497 ++++++++++++++++++++++++++------- inst/testdata/prov.json | 320 +++++++++++++++++++-- inst/testdata/warnings.json | 353 +++++++++++++++++++---- inst/testscripts/no-details.R |only inst/testsummaries/console.expected | 58 +++ inst/testsummaries/files.expected | 81 +++-- inst/testsummaries/no-details.expected |only inst/testsummaries/prov.expected | 82 +++-- inst/testsummaries/warnings.expected | 68 +++- man/summarize.Rd | 12 tests/testthat/test_provSummarize.R | 4 vignettes |only 21 files changed, 2155 insertions(+), 396 deletions(-)
More information about provSummarizeR at CRAN
Permanent link
Title: Identify Intra and Inter-Donor Variations in Bulk or Single Cell
Longitudinal Dataset
Description: It is a platform for analyzing longitudinal data from bulk as well as single cell datasets. It allows to identify variations in molecular features within and across donors over longitudinal time points. The analysis can be done on bulk expression dataset without known cell type information or single cell with cell type/user-defined groups. It allows to infer stable and variable features in given donor and each cell type (or user defined group). The outlier analysis can be performed to identify technical/biological perturbed samples in donor/participant. Further, differential analysis can be performed to decipher time-wise changes in gene expression in a cell type.
Author: Suhas Vasaikar [aut, cre],
Aarthi Talla [aut, ctb],
Xiaojun Li [aut, ctb]
Maintainer: Suhas Vasaikar <suhas.vasaikar@alleninstitute.org>
Diff between PALMO versions 0.1.1 dated 2022-05-31 and 0.1.2 dated 2022-08-17
DESCRIPTION | 6 - MD5 | 14 +-- NEWS.md | 3 R/mergePALMOdata.R | 1 R/sclongitudinalDEG.R | 8 + inst/doc/PALMO.Rmd | 5 - inst/doc/PALMO.html | 209 ++++++++++++++++++-------------------------------- vignettes/PALMO.Rmd | 5 - 8 files changed, 102 insertions(+), 149 deletions(-)
Title: An Image Processing Toolkit
Description: Incorporates functions for image preprocessing, filtering and image recognition. The package takes advantage of 'RcppArmadillo' to speed up computationally intensive functions. The histogram of oriented gradients descriptor is a modification of the 'findHOGFeatures' function of the 'SimpleCV' computer vision platform, the average_hash(), dhash() and phash() functions are based on the 'ImageHash' python library. The Gabor Feature Extraction functions are based on 'Matlab' code of the paper, "CloudID: Trustworthy cloud-based and cross-enterprise biometric identification" by M. Haghighat, S. Zonouz, M. Abdel-Mottaleb, Expert Systems with Applications, vol. 42, no. 21, pp. 7905-7916, 2015, <doi:10.1016/j.eswa.2015.06.025>. The 'SLIC' and 'SLICO' superpixel algorithms were explained in detail in (i) "SLIC Superpixels Compared to State-of-the-art Superpixel Methods", Radhakrishna Achanta, Appu Shaji, Kevin Smith, Aurelien Lucchi, Pascal Fua, and Sabine Suesstrunk, IEEE Transactions on [...truncated...]
Author: Lampros Mouselimis [aut, cre] ,
Sight Machine [cph] ,
Johannes Buchner [cph] ,
Mohammad Haghighat [cph] ,
Radhakrishna Achanta [cph] ),
Oleh Onyshchak [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between OpenImageR versions 1.2.3 dated 2022-08-08 and 1.2.4 dated 2022-08-17
DESCRIPTION | 8 ++-- MD5 | 16 ++++----- NEWS.md | 5 ++ README.md | 4 +- inst/doc/Gabor_Feature_Extraction.html | 4 +- inst/doc/Image_segmentation_superpixels_clustering.html | 4 +- inst/doc/The_OpenImageR_package.html | 18 +++++----- inst/doc/Warp_Affine.html | 6 +-- inst/include/OpenImageRheader.h | 28 +++++++++------- 9 files changed, 52 insertions(+), 41 deletions(-)
Title: Wearable Accelerometer Data File Readers
Description: Reads data collected from wearable acceleratometers as used in sleep and physical activity research. Currently supports file formats: binary data from 'GENEActiv' <https://activinsights.com/>, binary data from GENEA devices (not for sale), and .cwa-format data from 'Axivity' <https://axivity.com>. Primarily designed to complement R package GGIR <https://CRAN.R-project.org/package=GGIR>.
Author: Vincent T van Hees [aut, cre],
Patrick Bos [aut] ,
Jing Hua Zhao [ctb],
Evgeny Mirkes [ctb],
Dan Jackson [ctb],
Medical Research Council UK [cph, fnd],
Accelting [cph, fnd]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIRread versions 0.2.0 dated 2022-08-15 and 0.2.1 dated 2022-08-17
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ inst/NEWS.Rd | 5 +++++ man/GGIRread-package.Rd | 4 ++-- man/readAxivity.Rd | 6 ++++-- src/AxivityNumUnpack.cpp | 8 ++++---- tests/testthat/test_readAxivity.R | 2 ++ 7 files changed, 28 insertions(+), 19 deletions(-)
Title: Easy Data Wrangling and Statistical Transformations
Description: A lightweight package to easily manipulate, clean, transform,
and prepare your data for analysis. It also forms the data wrangling
backend for the packages in the 'easystats' ecosystem.
Author: Indrajeet Patil [aut, cre] ,
Dominique Makowski [aut] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Brenton M. Wiernik [aut] ,
Etienne Bacher [aut] ,
Remi Theriault [ctb]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between datawizard versions 0.5.0 dated 2022-08-07 and 0.5.1 dated 2022-08-17
DESCRIPTION | 20 ++++-- MD5 | 34 +++++------ NEWS.md | 7 ++ R/convert_na_to.R | 17 +++-- R/data_reshape.R | 19 +++--- R/demean.R | 13 ++-- R/standardize.models.R | 57 ++++++++++--------- README.md | 23 ++++--- inst/CITATION | 8 +- inst/doc/standardize_data.html | 13 +++- inst/doc/tidyverse_translation.html | 13 +++- man/convert_na_to.Rd | 7 +- man/data_to_long.Rd | 19 +++--- tests/testthat/test-convert_na_to.R | 10 ++- tests/testthat/test-data_group.R | 41 +++++++------ tests/testthat/test-data_recode.R | 102 ++++++++++++++++++---------------- tests/testthat/test-data_reshape.R | 26 ++++---- tests/testthat/test-replace_nan_inf.R | 13 ++-- 18 files changed, 246 insertions(+), 196 deletions(-)
Title: Statistical Methods for Phenology Analysis in Temperate Fruit
Trees
Description: The phenology of plants (i.e. the timing of their annual life
phases) depends on climatic cues. For temperate trees and many other plants,
spring phases, such as leaf emergence and flowering, have been found to result
from the effects of both cool (chilling) conditions and heat. Fruit tree
scientists (pomologists) have developed some metrics to quantify chilling
and heat (e.g. see Luedeling (2012) <doi:10.1016/j.scienta.2012.07.011>).
'chillR' contains functions for processing temperature records into
chilling (Chilling Hours, Utah Chill Units and Chill Portions) and heat units
(Growing Degree Hours). Regarding chilling metrics, Chill Portions are often
considered the most promising, but they are difficult to calculate. This package
makes it easy. 'chillR' also contains procedures for conducting a PLS analysis
relating phenological dates (e.g. bloom dates) to either mean temperatures or
mean chill and heat accumulation rates, based on long-term weather and phenology
records (Lued [...truncated...]
Author: Eike Luedeling [aut, cre] ,
Eduardo Fernandez [aut]
Maintainer: Eike Luedeling <eike@eikeluedeling.com>
Diff between chillR versions 0.72.7 dated 2022-01-11 and 0.72.8 dated 2022-08-17
DESCRIPTION | 10 MD5 | 22 - R/chillR-package.R | 2 R/plot_phenology_trends.R | 2 R/plot_scenarios.R | 2 build/partial.rdb |binary inst/doc/PhenoFlex.html | 484 +++++++++++++++++++++++++---- inst/doc/hourly_temperatures.html | 625 +++++++++++++++++++++++++++++++++----- man/chillR-package.Rd | 2 man/phenologyFitter.Rd | 3 man/plot_phenology_trends.Rd | 2 man/plot_scenarios.Rd | 2 12 files changed, 992 insertions(+), 164 deletions(-)
Title: Formulations of the International Association for the Properties
of Water and Steam
Description: Implementation of some of the formulations for the thermodynamic
and transport properties of ordinary water and steam released by the
International Association for the Properties of Water and Steam (IAPWS).
More specifically, the releases referenced R6-95(2018), R7-97(2012),
R12-08 and R15-11 at <http://iapws.org/release.html>.
Author: Jonathan Debove [aut, cre]
Maintainer: Jonathan Debove <jondebove@gmail.com>
Diff between iapws versions 0.7 dated 2022-08-10 and 0.8 dated 2022-08-17
iapws-0.7/iapws/src/R_init_iapws.c |only iapws-0.8/iapws/DESCRIPTION | 18 ++++++++---------- iapws-0.8/iapws/MD5 | 25 ++++++++++++------------- iapws-0.8/iapws/src/R_interface.c | 28 ++++++++++++++++++++++++++-- iapws-0.8/iapws/src/cond.c | 6 +++--- iapws-0.8/iapws/src/cond.h | 4 ++-- iapws-0.8/iapws/src/iapws.c | 34 +++++++++++++++++----------------- iapws-0.8/iapws/src/iapws.h | 32 ++++++++++++++++---------------- iapws-0.8/iapws/src/iapws95.c | 16 +++++++++------- iapws-0.8/iapws/src/if97.c | 20 +++++++++++--------- iapws-0.8/iapws/src/nroot.c | 37 +++++++++++++++++-------------------- iapws-0.8/iapws/src/nroot.h | 4 ---- iapws-0.8/iapws/src/visc.c | 4 ++-- iapws-0.8/iapws/src/visc.h | 4 ++-- 14 files changed, 125 insertions(+), 107 deletions(-)
Title: Interface to 'ECMWF' and 'CDS' Data Web Services
Description: Programmatic interface to the European Centre for Medium-Range
Weather Forecasts dataset web services (ECMWF; <https://www.ecmwf.int/>)
and Copernicus's Climate Data Store (CDS;
<https://cds.climate.copernicus.eu>). Allows for easy downloads of weather
forecasts and climate reanalysis data in R.
Author: Koen Hufkens [aut, cre] ,
Reto Stauffer [ctb] ,
Elio Campitelli [ctb] ,
BlueGreen Labs [cph, fnd]
Maintainer: Koen Hufkens <koen.hufkens@gmail.com>
Diff between ecmwfr versions 1.3.0 dated 2020-07-13 and 1.4.0 dated 2022-08-17
ecmwfr-1.3.0/ecmwfr/tests/testthat/test_ecmwf.r |only ecmwfr-1.4.0/ecmwfr/DESCRIPTION | 22 - ecmwfr-1.4.0/ecmwfr/MD5 | 63 ++-- ecmwfr-1.4.0/ecmwfr/NAMESPACE | 2 ecmwfr-1.4.0/ecmwfr/R/service-ads.R |only ecmwfr-1.4.0/ecmwfr/R/service-cds.R |only ecmwfr-1.4.0/ecmwfr/R/service-webapi.R |only ecmwfr-1.4.0/ecmwfr/R/service.R |only ecmwfr-1.4.0/ecmwfr/R/wf_request.R | 248 ++--------------- ecmwfr-1.4.0/ecmwfr/R/wf_request_batch.R |only ecmwfr-1.4.0/ecmwfr/R/wf_transfer.R | 11 ecmwfr-1.4.0/ecmwfr/R/zzz.R | 14 ecmwfr-1.4.0/ecmwfr/build/vignette.rds |binary ecmwfr-1.4.0/ecmwfr/inst/CITATION | 2 ecmwfr-1.4.0/ecmwfr/inst/doc/ads_vignette.R | 11 ecmwfr-1.4.0/ecmwfr/inst/doc/ads_vignette.Rmd | 13 ecmwfr-1.4.0/ecmwfr/inst/doc/ads_vignette.html | 174 ++++++++---- ecmwfr-1.4.0/ecmwfr/inst/doc/advanced_vignette.R | 52 ++- ecmwfr-1.4.0/ecmwfr/inst/doc/advanced_vignette.Rmd | 66 +++- ecmwfr-1.4.0/ecmwfr/inst/doc/advanced_vignette.html | 213 ++++++++++---- ecmwfr-1.4.0/ecmwfr/inst/doc/cds_vignette.R | 37 +- ecmwfr-1.4.0/ecmwfr/inst/doc/cds_vignette.Rmd | 43 +- ecmwfr-1.4.0/ecmwfr/inst/doc/cds_vignette.html | 196 +++++++++---- ecmwfr-1.4.0/ecmwfr/inst/doc/webapi_vignette.R | 1 ecmwfr-1.4.0/ecmwfr/inst/doc/webapi_vignette.Rmd | 1 ecmwfr-1.4.0/ecmwfr/inst/doc/webapi_vignette.html | 288 ++++++++++++-------- ecmwfr-1.4.0/ecmwfr/man/wf_product_info.Rd | 2 ecmwfr-1.4.0/ecmwfr/man/wf_request.Rd | 24 + ecmwfr-1.4.0/ecmwfr/man/wf_transfer.Rd | 6 ecmwfr-1.4.0/ecmwfr/tests/testthat/test_ads.R | 37 +- ecmwfr-1.4.0/ecmwfr/tests/testthat/test_cds.R | 196 ++++++++----- ecmwfr-1.4.0/ecmwfr/tests/testthat/test_webapi.r |only ecmwfr-1.4.0/ecmwfr/vignettes/ads_vignette.Rmd | 13 ecmwfr-1.4.0/ecmwfr/vignettes/advanced_vignette.Rmd | 66 +++- ecmwfr-1.4.0/ecmwfr/vignettes/cds_vignette.Rmd | 43 +- ecmwfr-1.4.0/ecmwfr/vignettes/webapi_vignette.Rmd | 1 36 files changed, 1091 insertions(+), 754 deletions(-)
Title: Lab for Developing and Testing Recommender Algorithms
Description: Provides a research infrastructure to develop and evaluate
collaborative filtering recommender algorithms. This includes a sparse
representation for user-item matrices, many popular algorithms, top-N recommendations,
and cross-validation. Hahsler (2022) <doi:10.48550/arXiv.2205.12371>.
Author: Michael Hahsler [aut, cre, cph]
,
Bregt Vereet [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between recommenderlab versions 1.0.1 dated 2022-06-17 and 1.0.2 dated 2022-08-17
DESCRIPTION | 8 - MD5 | 50 ++++---- NEWS.md | 5 R/AAAparameter.R | 39 ++++-- R/AllGenerics.R | 95 +++++++++++----- R/RECOM_ALS.R | 39 +++--- R/RECOM_IBCF.R | 8 - R/RECOM_LIBMF.R | 4 R/binaryRatingMatrix.R | 132 ++++++++++++----------- R/dissimilarity.R | 13 +- R/error.R | 26 ++-- R/predict.R | 37 ++++-- R/ratingMatrix.R | 189 ++++++++++++++++++++------------- R/realRatingMatrix.R | 186 ++++++++++++++++++-------------- R/sparseNAMatrix.R | 5 R/topNList.R | 204 ++++++++++++++++++++++++------------ README.md | 70 ++++++------ build/vignette.rds |binary data/Jester5k.rda |binary data/MSWeb.rda |binary data/MovieLense.rda |binary inst/README_files/TNR_vs_TPR-1.png |binary inst/doc/recommenderlab.pdf |binary man/dissimilarity.Rd | 6 - tests/testthat/test-dissimilarity.R | 12 +- tests/testthat/test-recom.R | 5 26 files changed, 682 insertions(+), 451 deletions(-)
More information about recommenderlab at CRAN
Permanent link
Title: Fasano-Franceschini Test: A Multidimensional Kolmogorov-Smirnov
Two-Sample Test
Description: An implementation of the two-sample multidimensional
Kolmogorov-Smirnov test described by Fasano and Franceschini (1987)
<doi:10.1093/mnras/225.1.155>. This test evaluates the null hypothesis
that two i.i.d. random samples were drawn from the same underlying
probability distribution. The data can be of any dimension, and can be
of any type (continuous, discrete, or mixed).
Author: Connor Puritz [aut, cre] ,
Elan Ness-Cohn [aut] ,
Rosemary Braun [ctb, ths] ,
Luca Weihs [cph]
Maintainer: Connor Puritz <connorpuritz2025@u.northwestern.edu>
Diff between fasano.franceschini.test versions 2.0.0 dated 2022-05-29 and 2.0.1 dated 2022-08-17
fasano.franceschini.test-2.0.0/fasano.franceschini.test/R/ff.test-package.R |only fasano.franceschini.test-2.0.0/fasano.franceschini.test/src/permute.h |only fasano.franceschini.test-2.0.0/fasano.franceschini.test/tests/testthat/test_2d.R |only fasano.franceschini.test-2.0.0/fasano.franceschini.test/tests/testthat/test_2d_2.R |only fasano.franceschini.test-2.0.0/fasano.franceschini.test/tests/testthat/test_3d.R |only fasano.franceschini.test-2.0.0/fasano.franceschini.test/tests/testthat/test_3d_2.R |only fasano.franceschini.test-2.0.0/fasano.franceschini.test/tests/testthat/test_4d.R |only fasano.franceschini.test-2.0.0/fasano.franceschini.test/tests/testthat/test_4d_2.R |only fasano.franceschini.test-2.0.0/fasano.franceschini.test/tests/testthat/test_5d.R |only fasano.franceschini.test-2.0.0/fasano.franceschini.test/tests/testthat/test_5d_2.R |only fasano.franceschini.test-2.0.1/fasano.franceschini.test/DESCRIPTION | 11 fasano.franceschini.test-2.0.1/fasano.franceschini.test/MD5 | 47 - fasano.franceschini.test-2.0.1/fasano.franceschini.test/NAMESPACE | 1 fasano.franceschini.test-2.0.1/fasano.franceschini.test/NEWS.md | 4 fasano.franceschini.test-2.0.1/fasano.franceschini.test/R/fasano.franceschini.test-package.R |only fasano.franceschini.test-2.0.1/fasano.franceschini.test/R/ff_function.R | 120 ++-- fasano.franceschini.test-2.0.1/fasano.franceschini.test/R/test_functions.R | 257 ++++------ fasano.franceschini.test-2.0.1/fasano.franceschini.test/README.md | 2 fasano.franceschini.test-2.0.1/fasano.franceschini.test/build/partial.rdb |binary fasano.franceschini.test-2.0.1/fasano.franceschini.test/man/fasano.franceschini.test.Rd | 107 ++-- fasano.franceschini.test-2.0.1/fasano.franceschini.test/src/ProgressBar.cpp | 32 - fasano.franceschini.test-2.0.1/fasano.franceschini.test/src/ff_internal_functions.cpp | 20 fasano.franceschini.test-2.0.1/fasano.franceschini.test/src/range_count.h | 43 - fasano.franceschini.test-2.0.1/fasano.franceschini.test/tests/testthat/test_2d_brute.R |only fasano.franceschini.test-2.0.1/fasano.franceschini.test/tests/testthat/test_2d_naive.R |only fasano.franceschini.test-2.0.1/fasano.franceschini.test/tests/testthat/test_3d_brute.R |only fasano.franceschini.test-2.0.1/fasano.franceschini.test/tests/testthat/test_3d_naive.R |only fasano.franceschini.test-2.0.1/fasano.franceschini.test/tests/testthat/test_4d_brute.R |only fasano.franceschini.test-2.0.1/fasano.franceschini.test/tests/testthat/test_4d_naive.R |only fasano.franceschini.test-2.0.1/fasano.franceschini.test/tests/testthat/test_5d_brute.R |only fasano.franceschini.test-2.0.1/fasano.franceschini.test/tests/testthat/test_5d_naive.R |only fasano.franceschini.test-2.0.1/fasano.franceschini.test/tests/testthat/test_errors.R | 5 fasano.franceschini.test-2.0.1/fasano.franceschini.test/tests/testthat/test_parallel.R | 21 fasano.franceschini.test-2.0.1/fasano.franceschini.test/tests/testthat/test_seed.R | 12 34 files changed, 347 insertions(+), 335 deletions(-)
More information about fasano.franceschini.test at CRAN
Permanent link
Title: Vehicular Emissions Inventories
Description: Elaboration of vehicular emissions inventories,
consisting in four stages, pre-processing activity data, preparing
emissions factors, estimating the emissions and post-processing of emissions
in maps and databases. More details in Ibarra-Espinosa et al (2018) <doi:10.5194/gmd-11-2209-2018>.
Before using VEIN you need to know the vehicular composition of your study area, in other words,
the combination of of type of vehicles, size and fuel of the fleet. Then, it is recommended to
start with the project to download a template to create a structure of directories and scripts.
Author: Sergio Ibarra-Espinosa [aut, cre]
,
Joao Bazzo [ctb]
Maintainer: Sergio Ibarra-Espinosa <zergioibarra@gmail.com>
Diff between vein versions 0.9.6 dated 2022-05-13 and 0.9.9 dated 2022-08-17
DESCRIPTION | 10 +++--- MD5 | 25 ++++++++-------- NEWS.md | 5 +++ R/get_project.R | 1 R/speciate.R | 76 ++++++++++++++++++++++----------------------------- R/sysdata.rda |binary build/partial.rdb |only data/decoder.rda |binary data/pollutants.rda |binary inst/doc/basics.html | 4 +- man/emis_cold.Rd | 8 ++++- man/get_project.Rd | 1 man/speciate.Rd | 76 ++++++++++++++++++++++----------------------------- man/vein-package.Rd | 4 +- 14 files changed, 103 insertions(+), 107 deletions(-)
Title: Row-by-Row Table Building
Description: Builds tables with customizable rows. Users can specify the type
of data to use for each row, as well as how to handle missing
data and the types of comparison tests to run on the table
columns.
Author: Andrew Guide [aut, cre],
Thomas Stewart [aut]
Maintainer: Andrew Guide <andrew.guide@vumc.org>
Diff between tangram.pipe versions 1.1.1 dated 2022-04-20 and 1.1.2 dated 2022-08-17
DESCRIPTION | 8 MD5 | 54 - R/binary_count.R | 5 R/binary_default.R | 6 R/binary_jama.R | 5 R/binary_pct.R | 5 R/binary_row.R | 10 R/cat_row.R | 7 R/num_row.R | 5 R/tbl_out.R | 12 R/tbl_start.R | 3 build/vignette.rds |binary inst/doc/Customizable-Table-Building.R | 1 inst/doc/Customizable-Table-Building.Rmd | 30 inst/doc/Customizable-Table-Building.html | 812 +++++++++++++++++-- inst/doc/Writing-User-Defined-Summary-Functions.R | 2 inst/doc/Writing-User-Defined-Summary-Functions.Rmd | 21 inst/doc/Writing-User-Defined-Summary-Functions.html | 644 ++++++++++++++- man/binary_count.Rd | 2 man/binary_default.Rd | 2 man/binary_jama.Rd | 2 man/binary_pct.Rd | 2 man/binary_row.Rd | 5 man/cat_row.Rd | 2 man/num_row.Rd | 2 man/tbl_start.Rd | 3 vignettes/Customizable-Table-Building.Rmd | 30 vignettes/Writing-User-Defined-Summary-Functions.Rmd | 21 28 files changed, 1517 insertions(+), 184 deletions(-)
Title: The Generalized DINA Model Framework
Description: A set of psychometric tools for cognitive diagnosis modeling based on the generalized deterministic inputs, noisy and gate (G-DINA) model by de la Torre (2011) <DOI:10.1007/s11336-011-9207-7> and its extensions, including the sequential G-DINA model by Ma and de la Torre (2016) <DOI:10.1111/bmsp.12070> for polytomous responses, and the polytomous G-DINA model by Chen and de la Torre <DOI:10.1177/0146621613479818> for polytomous attributes. Joint attribute distribution can be independent, saturated, higher-order, loglinear smoothed or structured. Q-matrix validation, item and model fit statistics, model comparison at test and item level and differential item functioning can also be conducted. A graphical user interface is also provided. For tutorials, please check Ma and de la Torre (2020) <DOI:10.18637/jss.v093.i14>, Ma and de la Torre (2019) <DOI:10.1111/emip.12262>, Ma (2019) <DOI:10.1007/978-3-030-05584-4_29> and de la Torre and Akbay (2019).
Author: Wenchao Ma [aut, cre, cph],
Jimmy de la Torre [aut, cph],
Miguel Sorrel [ctb],
Zhehan Jiang [ctb]
Maintainer: Wenchao Ma <wenchao.ma@ua.edu>
Diff between GDINA versions 2.8.8 dated 2022-01-20 and 2.9.3 dated 2022-08-17
DESCRIPTION | 31 ++-- MD5 | 74 +++++------ NAMESPACE | 4 NEWS.md | 8 + R/ExportedFuncs.R | 48 ++++++- R/GDI.R | 3 R/GDINA.R | 167 +++++++++++++++----------- R/GMSCDM.R | 52 ++++---- R/HO.R | 5 R/MCmodel.R | 52 ++++---- R/Mstep.R | 163 ++++++++++++------------- R/MultipleGroup_Estimation.R | 32 ++++- R/SingleGroup_Estimation.R | 42 +++++- R/bootSE.R | 2 R/coef.R | 2 R/extract.R | 2 R/itemfit.R | 2 R/itemparm.GDINA.R | 2 R/modelcomp.R | 3 R/monocheck.R | 2 R/personparm.GDINA.R | 2 R/plotIRF.GDINA.R | 2 R/print.GDINA.R | 9 - R/simGDINA.R | 176 ++++++++++++++++++++++------ R/structuralparm.R | 23 ++- R/utils.R | 176 +++++++++++++--------------- README.md | 15 -- build/vignette.rds |binary inst/doc/GDINA.html | 270 +++++++++++++++++++++++++++++++++++++++---- man/GDINA.Rd | 187 ++++++++++++++++------------- man/MCmodel.Rd | 5 man/Qval.Rd | 6 man/autoGDINA.Rd | 4 man/designmatrix.Rd | 12 + man/dif.Rd | 4 man/itemfit.Rd | 6 man/modelcomp.Rd | 10 - man/simGDINA.Rd | 105 ++++++++++++++-- 38 files changed, 1126 insertions(+), 582 deletions(-)
Title: Construct Natural-Language Lists with Internationalization
Description: Construct language-aware lists. Make "and"-separated and
"or"-separated lists that automatically conform to the user's language
settings.
Author: Alexander Rossell Hayes [aut, cre, cph]
,
Unicode, Inc. [dtc]
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between and versions 0.1.1 dated 2022-07-18 and 0.1.2 dated 2022-08-17
DESCRIPTION | 6 +-- MD5 | 13 ++++---- NEWS.md | 4 ++ R/normalize.R |only R/sysdata.rda |binary R/utils.R | 26 +--------------- README.md | 32 ++++++++------------ tests/testthat/test-utils.R | 68 ++++++++++++++++++++++++++++++++++++++++++-- 8 files changed, 94 insertions(+), 55 deletions(-)
Title: Tools for Highfrequency Data Analysis
Description: Provide functionality to manage, clean and match highfrequency
trades and quotes data, calculate various liquidity measures, estimate and
forecast volatility, detect price jumps and investigate microstructure noise and intraday
periodicity. A detailed vignette can be found in the paper
"Analyzing intraday financial data in R: The highfrequency package"
by Boudt, Kleen, and Sjoerup (2022, <doi:10.2139/ssrn.3917548>).
Author: Kris Boudt [aut, cre] ,
Jonathan Cornelissen [aut],
Scott Payseur [aut],
Giang Nguyen [ctb],
Onno Kleen [aut] ,
Emil Sjoerup [aut]
Maintainer: Kris Boudt <kris.boudt@ugent.be>
Diff between highfrequency versions 0.9.4 dated 2022-05-03 and 0.9.5 dated 2022-08-17
DESCRIPTION | 15 +- MD5 | 19 +-- NEWS.md | 247 ++++++++++++++++--------------------------- R/liquidityMeasures.R | 2 R/realizedMeasures.R | 4 man/MDtest.Rd |only man/getLiquidityMeasures.Rd | 8 - man/highfrequency-package.Rd | 1 man/rCholCov.Rd | 2 src/realizedMeasures.cpp | 2 tests/testthat/Rplots.pdf |binary 11 files changed, 120 insertions(+), 180 deletions(-)
Title: Read Excel Files
Description: Import excel files into R. Supports '.xls' via the embedded
'libxls' C library <https://github.com/libxls/libxls> and '.xlsx' via
the embedded 'RapidXML' C++ library <http://rapidxml.sourceforge.net>.
Works on Windows, Mac and Linux without external dependencies.
Author: Hadley Wickham [aut] ,
Jennifer Bryan [aut, cre] ,
RStudio [cph, fnd] ,
Marcin Kalicinski [ctb, cph] ,
Komarov Valery [ctb, cph] ,
Christophe Leitienne [ctb, cph] ,
Bob Colbert [ctb, cph] ,
David Hoerl [ctb, cph] ,
Evan Miller [ctb, cph]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between readxl versions 1.4.0 dated 2022-03-28 and 1.4.1 dated 2022-08-17
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NEWS.md | 4 ++++ README.md | 9 ++++++++- build/vignette.rds |binary inst/WORDLIST |only inst/doc/cell-and-column-types.html | 32 ++++++++++++++++++-------------- inst/doc/sheet-geometry.html | 26 ++++++++++++++------------ man/readxl-package.Rd | 4 ++-- 9 files changed, 58 insertions(+), 40 deletions(-)
Title: Creates Adjacency Matrices for Lineage Searches
Description: Creates and manages a provenance graph corresponding to the
provenance created by the 'rdtLite' package, which
collects provenance from R scripts. 'rdtLite' is available on CRAN.
The provenance format is an extension of the
W3C PROV JSON format (<https://www.w3.org/Submission/2013/SUBM-prov-json-20130424/>).
The extended JSON provenance format is described
in <https://github.com/End-to-end-provenance/ExtendedProvJson>.
Author: Orenna Brand [aut],
Joseph Wonsil [aut],
Emery Boose [aut],
Barbara Lerner [cre]
Maintainer: Barbara Lerner <blerner@mtholyoke.edu>
Diff between provGraphR versions 1.0 dated 2020-01-20 and 1.0.1 dated 2022-08-17
DESCRIPTION | 10 MD5 | 18 - R/graph.R | 14 - inst/testdata/ForwardOrder.json | 374 ++++++++++++++++++++++++++-- inst/testdata/basic.json | 492 +++++++++++++++++++++++++++++++------- inst/testdata/empty.json | 347 +++++++++++++++++++++++++- inst/testdata/no-data-edges.json | 368 ++++++++++++++++++++++++++-- inst/testdata/order.json | 374 ++++++++++++++++++++++++++-- inst/testdata/simple.json | 382 +++++++++++++++++++++++++++-- inst/testscripts/airt-vs-prec.pdf |binary 10 files changed, 2139 insertions(+), 240 deletions(-)
Title: Tools for Designing and Weighting Survey Samples
Description: Functions and datasets to support Valliant, Dever, and Kreuter, Practical Tools for Designing and Weighting Survey Samples (2nd edition, 2018). Contains functions for sample size calculation for survey samples using stratified or clustered one-, two-, and three-stage sample designs, and single-stage audit sample designs. Other functions compute variance components for multistage designs and sample sizes in two-phase designs. A number of example data sets are included.
Author: Richard Valliant, Jill A. Dever, Frauke Kreuter
Maintainer: Richard Valliant <valliant@umich.edu>
Diff between PracTools versions 1.2.7 dated 2022-06-13 and 1.2.8 dated 2022-08-17
DESCRIPTION | 10 ++++---- MD5 | 42 +++++++++++++++++++------------------ NAMESPACE | 1 R/nAuditAttr.R | 2 - R/nAuditMUS.R |only build/vignette.rds |binary data/Domainy1y2.RData |binary data/MDarea.pop.RData |binary data/ThirdGrade.RData |binary data/hospital.RData |binary data/labor.RData |binary data/mibrfss.RData |binary data/nhis.RData |binary data/nhis.large.RData |binary data/nhispart.RData |binary data/smho.N874.RData |binary data/smho98.RData |binary inst/doc/Singlestage-samsize.pdf |binary inst/doc/Varcomps-multistage.pdf |binary man/nAuditAttr.Rd | 10 ++++---- man/nAuditMUS.Rd |only vignettes/Singlestage-samsize.html | 4 +-- vignettes/Varcomps-multistage.html | 4 +-- 23 files changed, 38 insertions(+), 35 deletions(-)
Title: Multilevel Hidden Markov Models Using Bayesian Estimation
Description: An implementation of the multilevel (also known as mixed or random
effects) hidden Markov model using Bayesian estimation in R. The multilevel
hidden Markov model (HMM) is a generalization of the well-known hidden
Markov model, for the latter see Rabiner (1989) <doi:10.1109/5.18626>. The
multilevel HMM is tailored to accommodate (intense) longitudinal data of
multiple individuals simultaneously, see e.g., de Haan-Rietdijk et al.
<doi:10.1080/00273171.2017.1370364>. Using a multilevel framework, we allow
for heterogeneity in the model parameters (transition probability matrix and
conditional distribution), while estimating one overall HMM. The model can
be fitted on multivariate data with a categorical distribution, and include
individual level covariates (allowing for e.g., group comparisons on model
parameters). Parameters are estimated using Bayesian estimation utilizing
the forward-backward recursion within a hybrid Metropolis within Gibbs
sampler. The package also inclu [...truncated...]
Author: Emmeke Aarts [aut, cre],
Sebastian Mildiner Moraga [ctb]
Maintainer: Emmeke Aarts <e.aarts@uu.nl>
Diff between mHMMbayes versions 0.1.1 dated 2019-10-30 and 0.2.0 dated 2022-08-17
DESCRIPTION | 22 MD5 | 105 ++- NAMESPACE | 8 NEWS.md |only R/RcppExports.R |only R/forward_prob.R | 11 R/forward_prob_cpp.R |only R/int_to_prob.R | 137 +++- R/logl_mnl.R | 11 R/mHMM.R | 398 +++++-------- R/mHMMbayes.R | 4 R/mnl_RW_once.R | 4 R/mnl_hess.R | 17 R/obtain_emiss.R | 71 -- R/obtain_gamma.R | 25 R/pd_RW_emiss_cat.R |only R/pd_RW_gamma.R |only R/plot.mHMM.R | 5 R/plot.mHMM_gamma.R | 35 + R/prior_emiss_cat.R |only R/prior_gamma.R |only R/sim_mHMM.R | 398 ++++++++----- R/summary.mHMM.R | 8 R/utility_func_mHMM.R | 31 - R/vit_mHMM.R | 49 - build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 13 inst/doc/estimation-mhmm.R | 2 inst/doc/estimation-mhmm.Rmd | 2 inst/doc/estimation-mhmm.pdf |binary inst/doc/tutorial-mhmm.R | 36 - inst/doc/tutorial-mhmm.Rmd | 20 inst/doc/tutorial-mhmm.html | 1247 ++++++++++++++++++++++++++++------------- man/int_to_prob.Rd |only man/mHMM.Rd | 236 ++----- man/mHMMbayes.Rd | 1 man/nonverbal.Rd | 6 man/nonverbal_cov.Rd | 6 man/obtain_emiss.Rd | 43 - man/obtain_gamma.Rd | 15 man/pd_RW_emiss_cat.Rd |only man/pd_RW_gamma.Rd |only man/plot.mHMM.Rd | 21 man/plot.mHMM_gamma.Rd | 35 + man/prior_emiss_cat.Rd |only man/prior_gamma.Rd |only man/prob_to_int.Rd |only man/sim_mHMM.Rd | 284 +++++---- man/vit_mHMM.Rd | 36 - src |only tests/testthat/Rplots.pdf |only tests/testthat/test-mHMM.R | 239 +++---- tests/testthat/test-obtain.R | 62 -- tests/testthat/test-plots.R | 39 - tests/testthat/test-prior.R |only tests/testthat/test-sim_mHMM.R | 52 - tests/testthat/test-vit_mHMM.R | 52 - vignettes/estimation-mhmm.Rmd | 2 vignettes/nonv_4st_1000it.rda |binary vignettes/tutorial-mhmm.Rmd | 20 61 files changed, 2216 insertions(+), 1592 deletions(-)
Title: Base Functions and Resources for Rapporteket
Description: Provide common functions and resources for registry specific
R-packages at Rapporteket
<https://rapporteket.github.io/rapporteket/articles/short_introduction.html>.
This package is relevant for developers of packages/registries at
Rapporteket.
Author: Are Edvardsen [aut, cre] ,
Kevin Otto Thon [aut]
Maintainer: Are Edvardsen <biorakel@gmail.com>
Diff between rapbase versions 1.10.0 dated 2019-08-07 and 1.23.0 dated 2022-08-17
rapbase-1.10.0/rapbase/R/AppNavbarUserWidget.R |only rapbase-1.10.0/rapbase/R/AutoReportFuns.R |only rapbase-1.10.0/rapbase/R/GetConfig.R |only rapbase-1.10.0/rapbase/R/GetShinyUserGroups.R |only rapbase-1.10.0/rapbase/R/GetShinyUserName.R |only rapbase-1.10.0/rapbase/R/GetShinyUserReshId.R |only rapbase-1.10.0/rapbase/R/GetShinyUserRole.R |only rapbase-1.10.0/rapbase/R/GetUserEmail.R |only rapbase-1.10.0/rapbase/R/GetUserFullName.R |only rapbase-1.10.0/rapbase/R/GetUserGroups.R |only rapbase-1.10.0/rapbase/R/GetUserName.R |only rapbase-1.10.0/rapbase/R/GetUserPhone.R |only rapbase-1.10.0/rapbase/R/GetUserReshId.R |only rapbase-1.10.0/rapbase/R/GetUserRole.R |only rapbase-1.10.0/rapbase/R/HalloRapporteket.R |only rapbase-1.10.0/rapbase/R/Helligdager2008til2022.R |only rapbase-1.10.0/rapbase/R/InstallGithubPackage.R |only rapbase-1.10.0/rapbase/R/LoadRegData.R |only rapbase-1.10.0/rapbase/R/MakeMessage.R |only rapbase-1.10.0/rapbase/R/PushGist.R |only rapbase-1.10.0/rapbase/R/RapporteketDbConnection.R |only rapbase-1.10.0/rapbase/R/RunNoweb.R |only rapbase-1.10.0/rapbase/R/ShinySessionInfo.R |only rapbase-1.10.0/rapbase/R/UserInfo.R |only rapbase-1.10.0/rapbase/R/getRapPackages.R |only rapbase-1.10.0/rapbase/R/isPkgRapReg.R |only rapbase-1.10.0/rapbase/R/runShinyApp.R |only rapbase-1.10.0/rapbase/data/Helligdager2008til2022.rda |only rapbase-1.10.0/rapbase/man/HalloRapporteket.Rd |only rapbase-1.10.0/rapbase/man/Helligdager2008til2022.Rd |only rapbase-1.10.0/rapbase/man/LoadRegData.Rd |only rapbase-1.10.0/rapbase/man/MakeMessage.Rd |only rapbase-1.10.0/rapbase/man/PushGist.Rd |only rapbase-1.10.0/rapbase/man/RunNoweb.Rd |only rapbase-1.10.0/rapbase/man/getShinyUserGroups.Rd |only rapbase-1.10.0/rapbase/man/getShinyUserName.Rd |only rapbase-1.10.0/rapbase/man/getShinyUserReshId.Rd |only rapbase-1.10.0/rapbase/man/getShinyUserRole.Rd |only rapbase-1.10.0/rapbase/man/installGithubPackage.Rd |only rapbase-1.10.0/rapbase/man/makeUserSubscriptionTab.Rd |only rapbase-1.10.0/rapbase/man/runShinyApp.Rd |only rapbase-1.10.0/rapbase/man/selectByOrganization.Rd |only rapbase-1.10.0/rapbase/man/selectByOwner.Rd |only rapbase-1.10.0/rapbase/man/selectByReg.Rd |only rapbase-1.10.0/rapbase/man/shinySessionInfo.Rd |only rapbase-1.10.0/rapbase/tests/testthat/test-installGithubPackage.R |only rapbase-1.10.0/rapbase/tests/testthat/test-message.R |only rapbase-1.23.0/rapbase/DESCRIPTION | 21 rapbase-1.23.0/rapbase/MD5 | 218 +++++---- rapbase-1.23.0/rapbase/NAMESPACE | 74 ++- rapbase-1.23.0/rapbase/NEWS.md | 182 +++++++ rapbase-1.23.0/rapbase/R/appLog.R |only rapbase-1.23.0/rapbase/R/autoReport.R |only rapbase-1.23.0/rapbase/R/config.R |only rapbase-1.23.0/rapbase/R/dbConnection.R |only rapbase-1.23.0/rapbase/R/fireInTheHole.R |only rapbase-1.23.0/rapbase/R/github.R |only rapbase-1.23.0/rapbase/R/loadRegData.R |only rapbase-1.23.0/rapbase/R/log.R |only rapbase-1.23.0/rapbase/R/misc.R |only rapbase-1.23.0/rapbase/R/moduleAutoReport.R |only rapbase-1.23.0/rapbase/R/moduleExport.R |only rapbase-1.23.0/rapbase/R/moduleNavbarWidget.R |only rapbase-1.23.0/rapbase/R/moduleStats.R |only rapbase-1.23.0/rapbase/R/rapbase.R | 4 rapbase-1.23.0/rapbase/R/renderRmd.R |only rapbase-1.23.0/rapbase/R/sendEmail.R |only rapbase-1.23.0/rapbase/R/stagingData.R |only rapbase-1.23.0/rapbase/R/userAttribute.R |only rapbase-1.23.0/rapbase/R/utils.R |only rapbase-1.23.0/rapbase/README.md | 30 - 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rapbase-1.23.0/rapbase/tests/testthat/test-stagingData.R |only rapbase-1.23.0/rapbase/tests/testthat/test-userInfo-helper-functions.R | 48 +- rapbase-1.23.0/rapbase/tests/testthat/test-userInfo.R | 112 +++- 169 files changed, 1156 insertions(+), 394 deletions(-)
Title: Network-Based Genome Wide Association Studies
Description: A multi-core R package that contains a set of tools based on copula graphical
models for accomplishing the three interrelated goals in genetics and genomics in an
unified way: (1) linkage map construction, (2) constructing linkage disequilibrium
networks, and (3) exploring high-dimensional genotype-phenotype network and genotype-
phenotype-environment interactions networks.
The 'netgwas' package can deal with biparental inbreeding and outbreeding species with
any ploidy level, namely diploid (2 sets of chromosomes), triploid (3 sets of chromosomes),
tetraploid (4 sets of chromosomes) and so on. We target on high-dimensional data where
number of variables p is considerably larger than number of sample sizes (p >> n).
The computations is memory-optimized using the sparse matrix output. The 'netgwas'
implements the methodological developments in Behrouzi and Wit (2017)
<doi:10.1111/rssc.12287> and Behrouzi and Wit (2017) <doi:10.1093/bioinformatics/bty777>.
Author: Pariya Behrouzi [aut, cre] ,
Ernst C. Wit [ctb]
Maintainer: Pariya Behrouzi <pariya.behrouzi@gmail.com>
Diff between netgwas versions 1.13 dated 2020-11-17 and 1.14 dated 2022-08-17
DESCRIPTION | 30 +++++---- MD5 | 18 ++--- NAMESPACE | 2 R/buildMap.R | 54 ++++++++++++++--- R/model.selection.R | 149 ++++++++++++++++++++++++------------------------- R/netmap.R | 6 - R/selectnet.R | 4 - man/buildMap.Rd | 1 man/netgwas-package.Rd | 7 -- man/netmap.Rd | 1 10 files changed, 154 insertions(+), 118 deletions(-)
Title: Empirical Extrapolation of Time Feature Patterns
Description: An application for the empirical extrapolation of time features selecting and summarizing the most relevant patterns in time sequences.
Author: Giancarlo Vercellino [aut, cre, cph]
Maintainer: Giancarlo Vercellino <giancarlo.vercellino@gmail.com>
Diff between naive versions 1.1.0 dated 2022-08-15 and 1.2.0 dated 2022-08-17
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ R/main.R | 8 +++++--- 4 files changed, 16 insertions(+), 9 deletions(-)
Title: Regulatory Tables for Clinical Research
Description: Creates tables suitable for regulatory agency submission by
leveraging the 'gtsummary' package as the back end. Tables can be exported
to HTML, Word, PDF and more. Highly customized outputs are
available by utilizing existing styling functions from 'gtsummary' as
well as custom options designed for regulatory tables.
Author: Shannon Pileggi [aut, cre, cph]
,
Daniel D. Sjoberg [aut]
Maintainer: Shannon Pileggi <shannon.pileggi@gmail.com>
Diff between gtreg versions 0.1.0 dated 2022-08-10 and 0.1.1 dated 2022-08-17
DESCRIPTION | 6 MD5 | 14 - NEWS.md | 10 - R/tbl_ae_count.R | 43 +--- R/tbl_ae_focus.R | 2 inst/doc/counting-methods.html | 360 ++++++++++++++++++------------------- tests/testthat/test-tbl_ae_count.R | 72 +++++++ tests/testthat/test-tbl_ae_focus.R | 50 +++++ 8 files changed, 334 insertions(+), 223 deletions(-)
Title: United States Presidential State of the Union Addresses
Description: The President of the United States is constitutionally obligated to provide
a report known as the 'State of the Union'. The report summarizes the current challenges
facing the country and the president's upcoming legislative agenda. While historically
the State of the Union was often a written document, in recent decades it has always
taken the form of an oral address to a joint session of the United States Congress.
This package provides the raw text from every such address with the intention of
being used for meaningful examples of text analysis in R. The corpus is well suited
to the task as it is historically important, includes material intended to be read
and material intended to be spoken, and it falls in the public domain. As the corpus
spans over two centuries it is also a good test of how well various methods hold up
to the idiosyncrasies of historical texts. Associated data about each address, such
as the year, president, party, and format, are also included.
Author: Taylor B. Arnold [aut, cre]
Maintainer: Taylor B. Arnold <tarnold2@richmond.edu>
Diff between sotu versions 1.0.2 dated 2017-05-22 and 1.0.4 dated 2022-08-17
sotu-1.0.2/sotu/data/datalist |only sotu-1.0.4/sotu/DESCRIPTION | 18 +++++++++--------- sotu-1.0.4/sotu/MD5 | 17 ++++++++--------- sotu-1.0.4/sotu/R/data.R | 4 ++-- sotu-1.0.4/sotu/R/pkg.R | 1 - sotu-1.0.4/sotu/data/sotu_meta.rda |binary sotu-1.0.4/sotu/data/sotu_text.rda |binary sotu-1.0.4/sotu/man/sotu-package.Rd | 6 +++--- sotu-1.0.4/sotu/man/sotu_meta.Rd | 2 +- sotu-1.0.4/sotu/man/sotu_text.Rd | 2 +- 10 files changed, 24 insertions(+), 26 deletions(-)
Title: Translation Layer from MATLAB to R
Description: Allows users familiar with MATLAB to use MATLAB-named functions in
R. Several basic MATLAB functions are written in this package to mimic the
behavior of their original counterparts, with more to come as this package
grows.
Author: Waldir Leoncio [aut, cre]
Maintainer: Waldir Leoncio <w.l.netto@medisin.uio.no>
Diff between matlab2r versions 1.1.1 dated 2022-05-13 and 1.2.0 dated 2022-08-17
DESCRIPTION | 10 ++-- MD5 | 57 ++++++++++++++---------- NAMESPACE | 4 + NEWS.md |only R/blanks.R | 3 - R/char.R |only R/disp.R |only R/fix.R | 3 - R/inputdlg.R | 3 - R/isempty.R | 3 - R/isfield.R | 3 - R/matlab2r.R | 49 ++++++++++++++------- R/min_max.R | 6 +- R/misc.R |only R/num2str.R |only R/questdlg.R | 3 - R/rand.R | 3 - R/sum.R |only R/times.R | 4 + man/blanks.Rd | 3 - man/char.Rd |only man/disp.Rd |only man/dot-onAttach.Rd |only man/fix.Rd | 3 - man/inputdlg.Rd | 3 - man/isempty.Rd | 3 - man/isfield.Rd | 3 - man/matlab2r.Rd | 12 +++-- man/max.Rd | 3 - man/min.Rd | 3 - man/num2str.Rd |only man/questdlg.Rd | 3 - man/rand.Rd | 3 - man/sum_MATLAB.Rd |only tests/testthat/test-convertedBaseFunctions.R | 62 ++++++++++++++++++++++++++- 35 files changed, 186 insertions(+), 66 deletions(-)
Title: R Interface to the Keras Deep Learning Library
Description: Provides a consistent interface to the 'Keras' Deep Learning Library
directly from within R. 'Keras' provides specifications for describing dense
neural networks, convolution neural networks (CNN) and recurrent neural networks
(RNN) running on top of either 'TensorFlow' or 'Theano'. Type conversions between
Python and R are automatically handled correctly, even when the default
choices would otherwise lead to errors. Includes complete R documentation
and many working examples.
Author: Taylor Arnold [aut, cre],
Andrie de Vries [aut]
Maintainer: Taylor Arnold <tarnold2@richmond.edu>
Diff between kerasR versions 0.6.1 dated 2017-06-01 and 0.8.1 dated 2022-08-17
kerasR-0.6.1/kerasR/man/run_examples.Rd |only kerasR-0.8.1/kerasR/DESCRIPTION | 15 kerasR-0.8.1/kerasR/MD5 | 113 + kerasR-0.8.1/kerasR/NAMESPACE | 1 kerasR-0.8.1/kerasR/NEWS.md | 21 kerasR-0.8.1/kerasR/R/applications.R | 54 kerasR-0.8.1/kerasR/R/callbacks.R | 17 kerasR-0.8.1/kerasR/R/constraints.R | 6 kerasR-0.8.1/kerasR/R/datasets.R | 10 kerasR-0.8.1/kerasR/R/initalizers.R | 28 kerasR-0.8.1/kerasR/R/keras_init.R | 95 + kerasR-0.8.1/kerasR/R/layers.advanced_activations.R | 8 kerasR-0.8.1/kerasR/R/layers.convolutional.R | 25 kerasR-0.8.1/kerasR/R/layers.core.R | 17 kerasR-0.8.1/kerasR/R/layers.embeddings.R | 2 kerasR-0.8.1/kerasR/R/layers.local.R | 2 kerasR-0.8.1/kerasR/R/layers.noise.R | 2 kerasR-0.8.1/kerasR/R/layers.normalization.R | 1 kerasR-0.8.1/kerasR/R/layers.pooling.R | 3 kerasR-0.8.1/kerasR/R/layers.recurrent.R | 3 kerasR-0.8.1/kerasR/R/layers.wrappers.R | 4 kerasR-0.8.1/kerasR/R/models.R | 45 kerasR-0.8.1/kerasR/R/onLoad.R | 2 kerasR-0.8.1/kerasR/R/optimizers.R | 16 kerasR-0.8.1/kerasR/R/preprocessing.R | 25 kerasR-0.8.1/kerasR/R/regularizers.R | 6 kerasR-0.8.1/kerasR/R/utils.R | 45 kerasR-0.8.1/kerasR/R/zzz.R | 13 kerasR-0.8.1/kerasR/build/vignette.rds |binary kerasR-0.8.1/kerasR/inst/doc/introduction.R | 66 - kerasR-0.8.1/kerasR/inst/doc/introduction.Rmd | 4 kerasR-0.8.1/kerasR/inst/doc/introduction.html | 625 +++++++--- kerasR-0.8.1/kerasR/inst/examples/layers.R | 18 kerasR-0.8.1/kerasR/man/Activation.Rd | 36 kerasR-0.8.1/kerasR/man/ActivityRegularization.Rd | 18 kerasR-0.8.1/kerasR/man/Dense.Rd | 36 kerasR-0.8.1/kerasR/man/EarlyStopping.Rd | 8 kerasR-0.8.1/kerasR/man/Flatten.Rd | 18 kerasR-0.8.1/kerasR/man/LoadSave.Rd | 2 kerasR-0.8.1/kerasR/man/Optimizers.Rd | 2 kerasR-0.8.1/kerasR/man/Predict.Rd | 4 kerasR-0.8.1/kerasR/man/Sequential.Rd | 25 kerasR-0.8.1/kerasR/man/keras_available.Rd | 6 kerasR-0.8.1/kerasR/man/keras_check.Rd |only kerasR-0.8.1/kerasR/man/keras_compile.Rd | 33 kerasR-0.8.1/kerasR/man/keras_fit.Rd | 36 kerasR-0.8.1/kerasR/tests/testthat/test-applications.R |only kerasR-0.8.1/kerasR/tests/testthat/test-callbacks.R |only kerasR-0.8.1/kerasR/tests/testthat/test-constraints.R |only kerasR-0.8.1/kerasR/tests/testthat/test-convolutional.R |only kerasR-0.8.1/kerasR/tests/testthat/test-datasets.R |only kerasR-0.8.1/kerasR/tests/testthat/test-dense.R | 15 kerasR-0.8.1/kerasR/tests/testthat/test-dropout.R |only kerasR-0.8.1/kerasR/tests/testthat/test-embeddings.R |only kerasR-0.8.1/kerasR/tests/testthat/test-initializers.R |only kerasR-0.8.1/kerasR/tests/testthat/test-layer_wrappers.R |only kerasR-0.8.1/kerasR/tests/testthat/test-layers.R |only kerasR-0.8.1/kerasR/tests/testthat/test-layers_advanced_activations.R |only kerasR-0.8.1/kerasR/tests/testthat/test-layers_normalization.R |only kerasR-0.8.1/kerasR/tests/testthat/test-load_save.R |only kerasR-0.8.1/kerasR/tests/testthat/test-local.R |only kerasR-0.8.1/kerasR/tests/testthat/test-noise.R |only kerasR-0.8.1/kerasR/tests/testthat/test-optimizers.R |only kerasR-0.8.1/kerasR/tests/testthat/test-pooling.R |only kerasR-0.8.1/kerasR/tests/testthat/test-predict.R |only kerasR-0.8.1/kerasR/tests/testthat/test-preprocessing.R |only kerasR-0.8.1/kerasR/tests/testthat/test-recurrent.R |only kerasR-0.8.1/kerasR/tests/testthat/test-regularizers.R |only kerasR-0.8.1/kerasR/vignettes/introduction.Rmd | 4 69 files changed, 1136 insertions(+), 399 deletions(-)
Title: Wrappers Around Stanford CoreNLP Tools
Description: Provides a minimal interface for applying
annotators from the 'Stanford CoreNLP' java library. Methods
are provided for tasks such as tokenisation, part of speech
tagging, lemmatisation, named entity recognition, coreference
detection and sentiment analysis.
Author: Taylor Arnold, Lauren Tilton
Maintainer: Taylor Arnold <tarnold2@richmond.edu>
Diff between coreNLP versions 0.4-2 dated 2016-09-21 and 0.4-3 dated 2022-08-17
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/extdata/StanfordCoreNLP.properties | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Bayesian "Now-Cast" Estimation of Event Probabilities in
Multi-Party Democracies
Description: An implementation of a Bayesian framework for the opinion poll
based estimation of event probabilities in multi-party electoral systems
(Bender and Bauer (2018) <doi:10.21105/joss.00606>).
Author: Andreas Bender [aut, cre] ,
Alexander Bauer [aut] ,
Rebekka Schade [ctb]
Maintainer: Andreas Bender <bender.at.R@gmail.com>
Diff between coalitions versions 0.6.23 dated 2022-05-02 and 0.6.24 dated 2022-08-17
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 3 +++ man/get_entryprobability.Rd | 2 +- man/get_seats.Rd | 2 +- man/redistribute.Rd | 2 +- tests/testthat/test-workflow.R | 2 +- 7 files changed, 18 insertions(+), 15 deletions(-)
Title: Tools for Working with URLs and HTTP
Description: Useful tools for working with HTTP organised by HTTP verbs
(GET(), POST(), etc). Configuration functions make it easy to control
additional request components (authenticate(), add_headers() and so
on).
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between httr versions 1.4.3 dated 2022-05-03 and 1.4.4 dated 2022-08-17
DESCRIPTION | 8 ++-- MD5 | 10 ++--- NEWS.md | 4 ++ inst/doc/api-packages.html | 74 +++++++++++++++++++++--------------------- inst/doc/quickstart.html | 48 +++++++++++++-------------- tests/testthat/test-request.r | 5 +- 6 files changed, 76 insertions(+), 73 deletions(-)
Title: Elastic Net with Dichotomised Outcomes
Description: Implements lasso and ridge regression for dichotomised outcomes (Rauschenberger et al. 2022). Such outcomes are not naturally but artificially binary. They indicate whether an underlying measurement is greater than a threshold.
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <armin.rauschenberger@uni.lu>
Diff between cornet versions 0.0.5 dated 2021-04-19 and 0.0.6 dated 2022-08-17
DESCRIPTION | 12 MD5 | 34 NEWS.md | 44 R/functions.R | 2094 +++++++++++++++++++++++----------------------- README.md | 88 - build/vignette.rds |binary inst/doc/application.R | 532 +++++------ inst/doc/application.html | 1236 +++++++++++++-------------- inst/doc/article.Rmd | 32 inst/doc/article.html | 518 +++++------ inst/doc/simulation.R | 248 ++--- inst/doc/simulation.html | 934 ++++++++++---------- inst/doc/vignette.R | 190 ++-- inst/doc/vignette.Rmd | 384 ++++---- inst/doc/vignette.html | 1028 +++++++++++----------- man/cornet.Rd | 2 vignettes/article.Rmd | 32 vignettes/vignette.Rmd | 384 ++++---- 18 files changed, 3951 insertions(+), 3841 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-16 0.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-08 1.1.2
2018-10-27 1.1.1
2017-01-18 1.1
Title: Interpolate Data for Smooth Animations
Description: In order to create smooth animation between states of data,
tweening is necessary. This package provides a range of functions for
creating tweened data that can be used as basis for animation. Furthermore
it adds a number of vectorized interpolaters for common R data
types such as numeric, date and colour.
Author: Thomas Lin Pedersen [aut, cre]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between tweenr versions 1.0.2 dated 2021-03-23 and 2.0.0 dated 2022-08-17
tweenr-1.0.2/tweenr/R/RcppExports.R |only tweenr-1.0.2/tweenr/src/RcppExports.cpp |only tweenr-1.0.2/tweenr/src/interpolators.cpp |only tweenr-2.0.0/tweenr/DESCRIPTION | 14 - tweenr-2.0.0/tweenr/MD5 | 95 ++++++++----- tweenr-2.0.0/tweenr/NAMESPACE | 59 +++++++- tweenr-2.0.0/tweenr/NEWS.md | 6 tweenr-2.0.0/tweenr/R/aaa.R | 84 +++++++---- tweenr-2.0.0/tweenr/R/cpp11.R |only tweenr-2.0.0/tweenr/R/gen.R |only tweenr-2.0.0/tweenr/R/gen_along.R |only tweenr-2.0.0/tweenr/R/gen_at.R |only tweenr-2.0.0/tweenr/R/gen_components.R |only tweenr-2.0.0/tweenr/R/gen_events.R |only tweenr-2.0.0/tweenr/R/gen_keyframe.R |only tweenr-2.0.0/tweenr/R/get_frame.R |only tweenr-2.0.0/tweenr/R/interpolate_along.R | 70 ++++----- tweenr-2.0.0/tweenr/R/interpolate_at.R | 36 ++-- tweenr-2.0.0/tweenr/R/interpolate_element.R | 47 +++--- tweenr-2.0.0/tweenr/R/interpolate_element_at.R |only tweenr-2.0.0/tweenr/R/interpolate_fill.R | 46 ++---- tweenr-2.0.0/tweenr/R/interpolate_state.R | 44 ++---- tweenr-2.0.0/tweenr/R/tween.R | 21 -- tweenr-2.0.0/tweenr/R/tween_along.R | 25 +-- tweenr-2.0.0/tweenr/R/tween_appear.R | 4 tweenr-2.0.0/tweenr/R/tween_at.R | 3 tweenr-2.0.0/tweenr/R/tween_colour.R | 6 tweenr-2.0.0/tweenr/R/tween_components.R | 8 - tweenr-2.0.0/tweenr/R/tween_elements.R | 5 tweenr-2.0.0/tweenr/R/tween_events.R | 8 - tweenr-2.0.0/tweenr/R/tween_state.R | 42 +++-- tweenr-2.0.0/tweenr/R/tween_states.R | 8 - tweenr-2.0.0/tweenr/R/tweenr_package.R | 3 tweenr-2.0.0/tweenr/README.md | 10 - tweenr-2.0.0/tweenr/man/figures/README-unnamed-chunk-3.gif |binary tweenr-2.0.0/tweenr/man/figures/logo.svg |only tweenr-2.0.0/tweenr/man/gen_along.Rd |only tweenr-2.0.0/tweenr/man/gen_at.Rd |only tweenr-2.0.0/tweenr/man/gen_components.Rd |only tweenr-2.0.0/tweenr/man/gen_events.Rd |only tweenr-2.0.0/tweenr/man/gen_internal.Rd |only tweenr-2.0.0/tweenr/man/gen_keyframe.Rd |only tweenr-2.0.0/tweenr/man/get_frame.Rd |only tweenr-2.0.0/tweenr/man/interpolate_custom_at.Rd |only tweenr-2.0.0/tweenr/man/prepare_keyframes.Rd |only tweenr-2.0.0/tweenr/man/tween_components.Rd | 10 - tweenr-2.0.0/tweenr/man/tween_events.Rd | 16 -- tweenr-2.0.0/tweenr/man/tween_state.Rd | 2 tweenr-2.0.0/tweenr/man/tweenr-package.Rd | 8 - tweenr-2.0.0/tweenr/man/vec_tween_class.Rd |only tweenr-2.0.0/tweenr/src/along.cpp |only tweenr-2.0.0/tweenr/src/at.cpp |only tweenr-2.0.0/tweenr/src/cpp11.cpp |only tweenr-2.0.0/tweenr/src/element.cpp |only tweenr-2.0.0/tweenr/src/element_at.cpp |only tweenr-2.0.0/tweenr/src/fill.cpp |only tweenr-2.0.0/tweenr/src/state.cpp |only tweenr-2.0.0/tweenr/src/utils.h |only tweenr-2.0.0/tweenr/tests/testthat/test-along.R | 4 tweenr-2.0.0/tweenr/tests/testthat/test-at.R | 2 tweenr-2.0.0/tweenr/tests/testthat/test-components.R | 6 tweenr-2.0.0/tweenr/tests/testthat/test-events.R | 2 tweenr-2.0.0/tweenr/tests/testthat/test-fill.R | 2 tweenr-2.0.0/tweenr/tests/testthat/test-state.R | 4 64 files changed, 376 insertions(+), 324 deletions(-)
Title: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for
Phylogenetic Comparative Hypotheses
Description: Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history. See K. Bartoszek, J, Pienaar, P. Mostad, S. Andersson, T. F. Hansen (2012) <doi:10.1016/j.jtbi.2012.08.005>. The suggested PCMBaseCpp package (which significantly speeds up the likelihood calculations) can be obtained from <https://github.com/venelin/PCMBaseCpp/>.
Author: Krzysztof Bartoszek [cre, aut],
John Clarke [ctb],
Jesualdo Fuentes-Gonzalez [ctb],
Jason Pienaar [ctb]
Maintainer: Krzysztof Bartoszek <krzbar@protonmail.ch>
Diff between mvSLOUCH versions 2.7.4 dated 2022-05-04 and 2.7.5 dated 2022-08-17
DESCRIPTION | 11 +++++----- MD5 | 38 +++++++++++++++++++++++++++---------- R/OUphylregression.R | 2 - R/PhyloSDEestim.R | 2 - R/modelparamssummary.R | 2 - inst/doc/mvSLOUCH_Carnivorans.html | 4 +-- man/SummarizeMVSLOUCH.Rd | 2 - man/SummarizeOUCH.Rd | 2 - man/mvSLOUCH-package.Rd | 4 +-- man/mvslouchModel.Rd | 2 - man/ouchModel.Rd | 2 - tests |only 12 files changed, 45 insertions(+), 26 deletions(-)
Title: Automatic Unobserved Components Models
Description: Comprehensive analysis and forecasting
of univariate time series using automatic
unobserved components models and algorithms.
Pedregal, DJ (2022) <doi:10.18637/jss.v103.i09>,
Harvey, AC (1989) <doi:10.1017/CBO9781107049994>.
Pedregal, DJ and Young PC (2002) <doi:10.1002/9780470996430>.
Durbin J and Koopman SJ (2012) <doi:10.1093/acprof:oso/9780199641178.001.0001>.
Author: Diego J. Pedregal [aut, cre]
Maintainer: Diego J. Pedregal <Diego.Pedregal@uclm.es>
Diff between UComp versions 2.2.2 dated 2021-07-06 and 2.2.3 dated 2022-08-17
ChangeLog | 2 DESCRIPTION | 13 +- MD5 | 17 +-- R/UComp-package.R | 66 ++++++------ build/vignette.rds |binary inst/CITATION |only inst/doc/SpanishIpi.html | 258 +++++++++++++++++++++++++++++++++++++++++++---- man/UComp.Rd | 2 src/BSMmodel.h | 2 src/RcppExports.cpp | 5 10 files changed, 300 insertions(+), 65 deletions(-)
Title: Text Alignment with Smith-Waterman
Description: Find similarities between texts using the Smith-Waterman algorithm. The algorithm performs local sequence alignment and determines similar regions between two strings.
The Smith-Waterman algorithm is explained in the paper: "Identification of common molecular subsequences" by T.F.Smith and M.S.Waterman (1981), available at <doi:10.1016/0022-2836(81)90087-5>.
This package implements the same logic for sequences of words and letters instead of molecular sequences.
Author: Jan Wijffels [aut, cre, cph] ,
Vrije Universiteit Brussel - DIGI: Brussels Platform for Digital
Humanities [cph],
Lincoln Mullen [ctb, cph]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between text.alignment versions 0.1.2 dated 2020-09-08 and 0.1.3 dated 2022-08-17
DESCRIPTION | 12 LICENSE | 4 MD5 | 40 NAMESPACE | 22 NEWS.md | 32 R/RcppExports.R | 54 R/pkg.R | 10 R/smith_waterman.R | 1244 ++++++------- README.md | 50 build/vignette.rds |binary inst/doc/textalignment.R | 82 inst/doc/textalignment.Rmd | 184 - inst/doc/textalignment.html | 3630 +++++++++++++++++++-------------------- inst/extdata/example1.txt | 48 inst/extdata/example2.txt | 46 man/smith_waterman.Rd | 286 +-- man/smith_waterman_misaligned.Rd | 98 - man/smith_waterman_pairwise.Rd | 98 - man/tokenize_letters.Rd | 48 man/tokenize_spaces_punct.Rd | 52 vignettes/textalignment.Rmd | 184 - 21 files changed, 3107 insertions(+), 3117 deletions(-)
More information about text.alignment at CRAN
Permanent link
Title: Interactive Annotation of Text and Images
Description: Annotate text with entities and the relations between them. Annotate areas of interest in images with your labels.
Providing 'htmlwidgets' bindings to the 'recogito' <https://github.com/recogito/recogito-js> and 'annotorious' <https://github.com/recogito/annotorious> libraries.
Author: Jan Wijffels [aut, cre, cph],
Vrije Universiteit Brussel - DIGI: Brussels Platform for Digital
Humanities [cph],
Pelagios Network [cph] ,
CodePlex Foundation [cph] ,
OpenSeadragon contributors [cph]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between recogito versions 0.1.2 dated 2022-08-08 and 0.2.1 dated 2022-08-17
DESCRIPTION | 10 LICENSE.note | 21 MD5 | 52 - NAMESPACE | 48 - NEWS.md | 5 R/annotorious.R | 12 R/crop.R | 13 inst/examples/Cat_and_dog_standoff_(3926784260).jpg |only inst/examples/example-recogito.R |only inst/examples/test-recogito.R | 100 +-- inst/examples/test-recogitotagsonly.R | 100 +-- inst/htmlwidgets/lib/anno-2.4.1/a-shape-labels-0.2.2/annotorious-shape-labels.min.js | 2 inst/htmlwidgets/lib/anno-2.4.1/annotations.w3c.json | 88 +- inst/htmlwidgets/lib/anno-2.4.1/annotorious.min.js | 20 inst/htmlwidgets/lib/anno-2.4.1/index.html | 228 +++---- inst/htmlwidgets/lib/anno-2.5.10/a-openseadragon-2.6.0/annotorious.min.css | 2 inst/htmlwidgets/lib/anno-2.5.10/a-openseadragon-2.6.0/openseadragon-annotorious.min.js | 50 - inst/htmlwidgets/lib/anno-2.5.10/annotorious.min.css | 2 inst/htmlwidgets/lib/anno-2.5.10/annotorious.min.js | 90 +- inst/htmlwidgets/lib/recogito-js-1.7.1/recogito.min.css | 8 inst/htmlwidgets/lib/recogito-js-1.7.1/recogito.min.js | 4 inst/htmlwidgets/lib/recogito-js-1.7.1/recogito.min.js.LICENSE.txt | 28 inst/htmlwidgets/recogito.js | 3 inst/htmlwidgets/recogito.yaml | 18 inst/htmlwidgets/recogitotagsonly.yaml | 18 man/annotorious-shiny.Rd | 302 +++++----- man/ocv_crop_annotorious.Rd | 7 man/ocv_read_annotorious.Rd | 6 28 files changed, 645 insertions(+), 592 deletions(-)
Title: Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Extended
Description: For one-way layout experiments the one-way ANOVA can
be performed as an omnibus test. All-pairs multiple comparisons
tests (Tukey-Kramer test, Scheffe test, LSD-test)
and many-to-one tests (Dunnett test) for normally distributed
residuals and equal within variance are available. Furthermore,
all-pairs tests (Games-Howell test, Tamhane's T2 test,
Dunnett T3 test, Ury-Wiggins-Hochberg test) and many-to-one
(Tamhane-Dunnett Test) for normally distributed residuals
and heterogeneous variances are provided. Van der Waerden's normal
scores test for omnibus, all-pairs and many-to-one tests is
provided for non-normally distributed residuals and homogeneous
variances. The Kruskal-Wallis, BWS and Anderson-Darling
omnibus test and all-pairs tests
(Nemenyi test, Dunn test, Conover test, Dwass-Steele-Critchlow-
Fligner test) as well as many-to-one (Nemenyi test, Dunn test,
U-test) are given for the analysis of variance by ranks.
Non-parametric trend tests (Jonckheere test, Cuzick test,
Johnson-Mehr [...truncated...]
Author: Thorsten Pohlert [aut, cre]
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between PMCMRplus versions 1.9.5 dated 2022-07-11 and 1.9.6 dated 2022-08-17
DESCRIPTION | 8 +++--- MD5 | 45 ++++++++++++++++++++------------------ NAMESPACE | 2 + R/SD1.R |only R/adManyOneTest.R | 2 - R/bwsManyOneTest.R | 12 ++++------ R/chenJanTest.R |only R/chenTest.R | 14 ++++++++--- R/frdHouseTest.R | 2 - R/kwManyOneConoverTest.R | 2 + R/kwManyOneDunnTest.R | 1 R/kwManyOneNdwTest.R | 2 + R/manyOneUTest.R | 1 R/normalScoresManyOneTest.R | 1 inst/NEWS.Rd | 15 ++++++++++++ inst/doc/QuickReferenceGuide.html | 4 +-- man/adManyOneTest.Rd | 11 +++++++++ man/bwsManyOneTest.Rd | 18 +++++++++++---- man/bwsTrendTest.Rd | 7 ++--- man/chenJanTest.Rd |only man/chenTest.Rd | 20 +++++++++++++--- man/kwManyOneConoverTest.Rd | 11 +++++++++ man/kwManyOneDunnTest.Rd | 11 +++++++++ man/manyOneUTest.Rd | 11 +++++++++ man/normalScoresManyOneTest.Rd | 11 +++++++++ 25 files changed, 159 insertions(+), 52 deletions(-)
Title: Binarize Images for Enhancing Optical Character Recognition
Description: Improve optical character recognition by binarizing images. The package focuses primarily on local adaptive thresholding algorithms.
In English, this means that it has the ability to turn a color or gray scale image into a black and white image. This is particularly useful
as a preprocessing step for optical character recognition or handwritten text recognition.
Author: Jan Wijffels [aut, cre, cph] ,
Vrije Universiteit Brussel - DIGI: Brussels Platform for Digital
Humanities [cph] ,
Brandon M. Petty [ctb, cph]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between image.binarization versions 0.1.2 dated 2021-07-05 and 0.1.3 dated 2022-08-17
DESCRIPTION | 12 +- LICENSE.note | 248 ++++++++++++++++++++++++------------------------- MD5 | 16 +-- NAMESPACE | 18 +-- NEWS.md | 26 ++--- R/RcppExports.R | 14 +- R/image_binarization.R | 174 +++++++++++++++++----------------- R/pkg.R | 14 +- README.md | 114 +++++++++++----------- 9 files changed, 320 insertions(+), 316 deletions(-)
More information about image.binarization at CRAN
Permanent link
Title: Classical Age-Depth Modelling of Cores from Deposits
Description: Performs 'classical' age-depth modelling of dated sediment deposits - prior to applying more sophisticated techniques such as Bayesian age-depth modelling. Any radiocarbon dated depths are calibrated. Age-depth models are constructed by sampling repeatedly from the dated levels, each time drawing age-depth curves. Model types include linear interpolation, linear or polynomial regression, and a range of splines. See Blaauw (2010). <doi:10.1016/j.quageo.2010.01.002>.
Author: Maarten Blaauw [aut, cre] ,
J. Andres Christen [ctb] ,
Judith Esquivel Vazquez [ctb],
Simon Goring [ctb]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between clam versions 2.4.0 dated 2021-08-15 and 2.5.0 dated 2022-08-17
clam-2.4.0/clam/man/student.t.Rd |only clam-2.5.0/clam/DESCRIPTION | 14 clam-2.5.0/clam/MD5 | 42 clam-2.5.0/clam/NAMESPACE | 4 clam-2.5.0/clam/NEWS.md | 3 clam-2.5.0/clam/R/calibrate.R | 32 clam-2.5.0/clam/R/clam.R | 22 clam-2.5.0/clam/R/plots.R | 4 clam-2.5.0/clam/R/readwrite.R | 14 clam-2.5.0/clam/build/partial.rdb |binary clam-2.5.0/clam/build/vignette.rds |binary clam-2.5.0/clam/inst/doc/clam.Rmd | 2 clam-2.5.0/clam/inst/doc/clam.html | 275 + clam-2.5.0/clam/man/calib.t.Rd |only clam-2.5.0/clam/vignettes/clam.Rmd | 2 clam-2.5.0/clam/vignettes/clam_runs/Example/Example_interpolated.pdf |binary clam-2.5.0/clam/vignettes/clam_runs/Example/Example_interpolated.png |binary clam-2.5.0/clam/vignettes/clam_runs/Example/Example_interpolated_ages.txt | 1348 ++++---- clam-2.5.0/clam/vignettes/clam_runs/Example/Example_interpolated_settings.txt | 8 clam-2.5.0/clam/vignettes/clam_runs/Example/Example_smooth_spline.pdf |binary clam-2.5.0/clam/vignettes/clam_runs/Example/Example_smooth_spline.png |binary clam-2.5.0/clam/vignettes/clam_runs/Example/Example_smooth_spline_ages.txt | 1542 +++++----- clam-2.5.0/clam/vignettes/clam_runs/Example/Example_smooth_spline_settings.txt | 8 23 files changed, 1696 insertions(+), 1624 deletions(-)
Title: Augments 'ASReml-R' in Fitting Mixed Models and Packages
Generally in Exploring Prediction Differences
Description: Assists in automating the selection of terms to include in mixed models when
'asreml' is used to fit the models. Also used to display, in tables and graphs, predictions
obtained using any model fitting function and to explore differences between predictions.
The content falls into the following natural groupings: (i) Data, (ii) Object
manipulation functions, (iii) Model modification functions, (iv) Model testing functions,
(v) Model diagnostics functions, (vi) Prediction production and presentation functions,
(vii) Response transformation functions, and (viii) Miscellaneous functions (for further
details see 'asremlPlus-package' in help). A history of
the fitting of a sequence of models is kept in a data frame. Procedures are available for
choosing models that conform to the hierarchy or marginality principle and for displaying
predictions for significant terms in tables and graphs. The 'asreml' package provides a
computationally efficient algorithm for fitting mixed models using Resi [...truncated...]
Author: Chris Brien [aut, cre]
Maintainer: Chris Brien <chris.brien@adelaide.edu.au>
Diff between asremlPlus versions 4.3-31 dated 2021-12-06 and 4.3.36 dated 2022-08-17
DESCRIPTION | 12 MD5 | 65 ++-- NAMESPACE | 7 R/LSDutilities.R | 6 R/S3methodsDeprecations.r | 1 R/alldiffs.v2.r | 19 - R/choose.r | 4 R/plotLSDs.r | 377 +++++++++++++++++++++++--- R/plotPvalues.r | 90 +++--- R/reml4.v8.r | 16 - build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 23 + inst/doc/Ladybird.asreml.pdf |binary inst/doc/Ladybird.lm.pdf |binary inst/doc/Wheat.analysis.pdf |binary inst/doc/Wheat.infoCriteria.pdf |binary inst/doc/asremlPlus-manual.pdf |binary man/Ladybird.dat.Rd | 2 man/asremlPlus-package.Rd | 7 man/exploreLSDs.alldiffs.Rd | 4 man/infoCriteria.asreml.Rd | 2 man/plotLSDerrors.alldiffs.Rd |only man/plotLSDerrors.data.frame.Rd |only man/plotLSDs.alldiffs.Rd | 11 man/plotLSDs.data.frame.Rd | 15 - man/plotPvalues.alldiffs.Rd | 11 man/plotPvalues.data.frame.Rd | 10 tests/testthat/Rplots.pdf |binary tests/testthat/test3PredictionsPresentation.r | 37 +- tests/testthat/test4PredictionsPresentation.r | 81 ++--- tests/testthat/test4Selection.r | 20 - tests/testthat/test4alldiffs.r | 42 ++ tests/testthat/test4alldiffslme.r | 34 +- tests/testthat/testthat-problems.rds |only 35 files changed, 644 insertions(+), 252 deletions(-)
Title: Spatial Association Between Regionalizations
Description: Calculates a degree of spatial association between regionalizations
or categorical maps using the information-theoretical V-measure
(Nowosad and Stepinski (2018) <doi:10.1080/13658816.2018.1511794>). It also
offers an R implementation of the MapCurve method
(Hargrove et al. (2006) <doi:10.1007/s10109-006-0025-x>).
Author: Jakub Nowosad [aut, cre] ,
Tomasz Stepinski [aut],
Space Informatics Lab [cph]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between sabre versions 0.4.0 dated 2021-06-03 and 0.4.3 dated 2022-08-17
DESCRIPTION | 10 - MD5 | 23 ++- R/sabre-package.R | 3 README.md | 12 -- build/partial.rdb |only build/vignette.rds |binary data/eco_us.rda |binary data/regions1.rda |binary data/regions2.rda |binary inst/doc/sabre.html | 306 +++++++++++++++++++++++++++++++++++++++++++++++---- inst/doc/sabre2.R |only inst/doc/sabre2.Rmd |only inst/doc/sabre2.html |only man/sabre-package.Rd | 10 - vignettes/sabre2.Rmd |only 15 files changed, 313 insertions(+), 51 deletions(-)
Title: Analysis of Simulation Studies Including Monte Carlo Error
Description: Summarise results from simulation studies and compute Monte Carlo
standard errors of commonly used summary statistics. This package is modelled
on the 'simsum' user-written command in 'Stata' (White I.R., 2010
<https://www.stata-journal.com/article.html?article=st0200>), further extending
it with additional performance measures and functionality.
Author: Alessandro Gasparini [aut, cre]
,
Ian R. White [aut]
Maintainer: Alessandro Gasparini <alessandro@ellessenne.xyz>
Diff between rsimsum versions 0.11.2 dated 2022-03-22 and 0.11.3 dated 2022-08-17
DESCRIPTION | 14 ++-- MD5 | 28 ++++---- NEWS.md | 10 +++ README.md | 24 +++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/A-introduction.html | 115 +++++++++++++++++------------------ inst/doc/B-relhaz.html | 117 ++++++++++++++++++------------------ inst/doc/C-plotting.html | 119 ++++++++++++++++++------------------- inst/doc/D-nlp.html | 117 ++++++++++++++++++------------------ inst/doc/E-custom-inputs.html | 115 +++++++++++++++++------------------ inst/doc/F-rsimsumtidyverse.html | 115 +++++++++++++++++------------------ man/figures/README-nlp-1.png |binary man/figures/README-ridgeline-1.png |binary man/figures/hex.png |binary 15 files changed, 389 insertions(+), 385 deletions(-)
Title: Leader Clustering Algorithm
Description: The leader clustering algorithm provides
a means for clustering a set of data points. Unlike many other clustering
algorithms it does not require the user to specify the number of clusters,
but instead requires the approximate radius of a cluster as its primary
tuning parameter. The package provides a fast implementation of this
algorithm in n-dimensions using Lp-distances (with special cases for p=1,2,
and infinity) as well as for spatial data using the Haversine
formula, which takes latitude/longitude pairs as inputs and clusters
based on great circle distances.
Author: Taylor B. Arnold
Maintainer: Taylor B. Arnold <tarnold2@richmond.edu>
Diff between leaderCluster versions 1.2 dated 2014-12-15 and 1.3 dated 2022-08-17
leaderCluster-1.2/leaderCluster/src/leaderCluster.cpp |only leaderCluster-1.3/leaderCluster/DESCRIPTION | 11 - leaderCluster-1.3/leaderCluster/MD5 | 13 - leaderCluster-1.3/leaderCluster/NAMESPACE | 3 leaderCluster-1.3/leaderCluster/R/leaderCluster.R | 87 +++++++++ leaderCluster-1.3/leaderCluster/README.md |only leaderCluster-1.3/leaderCluster/man/leaderCluster.Rd | 167 +++++++++--------- leaderCluster-1.3/leaderCluster/src/ctest.h |only leaderCluster-1.3/leaderCluster/src/init.c |only leaderCluster-1.3/leaderCluster/src/leaderCluster.c |only 10 files changed, 187 insertions(+), 94 deletions(-)
Title: Graphics Layers for Plotting Image Data with 'ggplot2'
Description: Provides two new layer types for displaying image data as layers
within the Grammar of Graphics framework. Displays images using either a
rectangle interface, with a fixed bounding box, or a point interface using a
central point and general size parameter. Images can be given as local
JPEG or PNG files, external resources, or as a list column containing
raster image data.
Author: Taylor B. Arnold [aut, cre]
Maintainer: Taylor B. Arnold <tarnold2@richmond.edu>
Diff between ggimg versions 0.1.1 dated 2021-05-06 and 0.1.2 dated 2022-08-17
DESCRIPTION | 10 MD5 | 6 build/vignette.rds |binary inst/doc/package_intro.html | 753 +++++++++++++++++++++++--------------------- 4 files changed, 417 insertions(+), 352 deletions(-)
Title: Send Email Messages
Description: A light, simple tool for sending emails with minimal dependencies.
Author: Andrew B. Collier [aut, cre, cph],
Matt Dennis [ctb],
Antoine Bichat [ctb] ,
Daniel Fahey [ctb],
Johann R. Kleinbub [ctb],
Panagiotis Moulos [ctb],
Swechhya Bista [ctb],
Colin Fay [ctb]
Maintainer: Andrew B. Collier <andrew@fathomdata.dev>
Diff between emayili versions 0.7.10 dated 2022-04-28 and 0.7.11 dated 2022-08-17
DESCRIPTION | 8 +++--- MD5 | 18 +++++++------- NAMESPACE | 1 NEWS.md | 4 +++ R/body.R | 2 - R/css.R | 4 +-- R/emayili.R | 10 ++++++-- R/render.R | 49 +++++++++++++++++++++++----------------- R/utils.R | 20 +++++++++------- README.md | 73 +++++++++++++++++++++++++++++++++++++++++++++--------------- 10 files changed, 124 insertions(+), 65 deletions(-)
Title: A Set of Tools that Enhance Reproducibility Beyond Package
Management
Description: Collection of high-level, machine- and OS-independent tools
for making deeply reproducible and reusable content in R.
The two workhorse functions are Cache and prepInputs;
these allow for: nested caching, robust to environments, and objects with
environments (like functions); and data retrieval and processing
in continuous workflow environments. In all cases,
efforts are made to make the first and subsequent calls of functions have
the same result, but vastly faster at subsequent times by way of checksums
and digesting. Several features are still under active development, including
cloud storage of cached objects, allowing for sharing between users. Several
advanced options are available, see ?reproducibleOptions.
Author: Eliot J B McIntire [aut, cre] ,
Alex M Chubaty [aut] ,
Tati Micheletti [ctb] ,
Ceres Barros [ctb] ,
Ian Eddy [ctb] ,
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between reproducible versions 1.2.8 dated 2021-09-26 and 1.2.10 dated 2022-08-17
reproducible-1.2.10/reproducible/DESCRIPTION | 33 reproducible-1.2.10/reproducible/MD5 | 326 reproducible-1.2.10/reproducible/NAMESPACE | 558 - reproducible-1.2.10/reproducible/NEWS.md | 1025 +- reproducible-1.2.10/reproducible/R/DBI.R | 1244 +- reproducible-1.2.10/reproducible/R/cache-helpers.R | 3115 +++--- reproducible-1.2.10/reproducible/R/cache-internals.R | 678 - reproducible-1.2.10/reproducible/R/cache-tools.R | 1547 +-- reproducible-1.2.10/reproducible/R/cache.R | 3853 +++---- reproducible-1.2.10/reproducible/R/checksums.R | 668 - reproducible-1.2.10/reproducible/R/cloud.R | 620 - reproducible-1.2.10/reproducible/R/cloudOld.R | 214 reproducible-1.2.10/reproducible/R/convertPaths.R | 383 reproducible-1.2.10/reproducible/R/copy.R | 400 reproducible-1.2.10/reproducible/R/download.R | 1293 +- reproducible-1.2.10/reproducible/R/gis.R | 624 - reproducible-1.2.10/reproducible/R/git.R | 130 reproducible-1.2.10/reproducible/R/helpers.R | 970 + reproducible-1.2.10/reproducible/R/objectSize.R | 362 reproducible-1.2.10/reproducible/R/options.R | 405 reproducible-1.2.10/reproducible/R/packages.R | 124 reproducible-1.2.10/reproducible/R/pipe.R | 728 - reproducible-1.2.10/reproducible/R/postProcess.R | 5062 +++++----- reproducible-1.2.10/reproducible/R/postProcessTerra.R |only reproducible-1.2.10/reproducible/R/preProcess.R | 2657 ++--- reproducible-1.2.10/reproducible/R/prepInputs.R | 2508 ++-- reproducible-1.2.10/reproducible/R/reexports.R | 56 reproducible-1.2.10/reproducible/R/reproducible-deprecated.R | 108 reproducible-1.2.10/reproducible/R/reproducible-package.R | 90 reproducible-1.2.10/reproducible/R/robustDigest.R | 863 - reproducible-1.2.10/reproducible/R/search.R | 116 reproducible-1.2.10/reproducible/R/spatialObjects-class.R | 76 reproducible-1.2.10/reproducible/R/zzz.R | 115 reproducible-1.2.10/reproducible/README.md | 197 reproducible-1.2.10/reproducible/build/vignette.rds |binary reproducible-1.2.10/reproducible/inst/WORDLIST | 280 reproducible-1.2.10/reproducible/inst/doc/Cache-using-postgresql.R | 58 reproducible-1.2.10/reproducible/inst/doc/Cache-using-postgresql.Rmd | 200 reproducible-1.2.10/reproducible/inst/doc/Cache-using-postgresql.html | 674 - reproducible-1.2.10/reproducible/inst/doc/Intro-to-Cache.R | 426 reproducible-1.2.10/reproducible/inst/doc/Intro-to-Cache.Rmd | 628 - reproducible-1.2.10/reproducible/inst/doc/Intro-to-Cache.html | 3675 +++---- reproducible-1.2.10/reproducible/inst/examples/example_Cache.R | 112 reproducible-1.2.10/reproducible/inst/examples/example_assessDataType.R | 212 reproducible-1.2.10/reproducible/inst/examples/example_assessDataTypeGDAL.R | 122 reproducible-1.2.10/reproducible/inst/examples/example_checkPath.R | 44 reproducible-1.2.10/reproducible/inst/examples/example_postProcess.R | 95 reproducible-1.2.10/reproducible/man/Cache.Rd | 1002 - reproducible-1.2.10/reproducible/man/CacheDigest.Rd | 98 reproducible-1.2.10/reproducible/man/CacheHelpers.Rd | 134 reproducible-1.2.10/reproducible/man/Checksums.Rd | 226 reproducible-1.2.10/reproducible/man/Copy.Rd | 206 reproducible-1.2.10/reproducible/man/Deprcated.Rd | 42 reproducible-1.2.10/reproducible/man/Filenames.Rd | 78 reproducible-1.2.10/reproducible/man/Path-class.Rd | 110 reproducible-1.2.10/reproducible/man/addChangedAttr.Rd | 70 reproducible-1.2.10/reproducible/man/addTagsToOutput.Rd | 62 reproducible-1.2.10/reproducible/man/archiveExtractBinary.Rd | 38 reproducible-1.2.10/reproducible/man/assessDataType.Rd | 436 reproducible-1.2.10/reproducible/man/basename2.Rd | 34 reproducible-1.2.10/reproducible/man/cache-helpers.Rd | 164 reproducible-1.2.10/reproducible/man/cache-tools.Rd | 150 reproducible-1.2.10/reproducible/man/cacheMessage.Rd | 98 reproducible-1.2.10/reproducible/man/checkAndMakeCloudFolderID.Rd | 78 reproducible-1.2.10/reproducible/man/checkCacheRepo.Rd | 90 reproducible-1.2.10/reproducible/man/checkForAuxiliaryFiles.Rd | 36 reproducible-1.2.10/reproducible/man/checkGitConfig.Rd | 30 reproducible-1.2.10/reproducible/man/checkoutVersion.Rd | 114 reproducible-1.2.10/reproducible/man/clearStubArtifacts.Rd | 110 reproducible-1.2.10/reproducible/man/cloudCheckOld.Rd | 48 reproducible-1.2.10/reproducible/man/cloudDownload.Rd | 88 reproducible-1.2.10/reproducible/man/cloudSyncCacheOld.Rd | 134 reproducible-1.2.10/reproducible/man/cloudUpload.Rd | 62 reproducible-1.2.10/reproducible/man/cloudUploadFromCache.Rd | 82 reproducible-1.2.10/reproducible/man/cloudWriteOld.Rd | 74 reproducible-1.2.10/reproducible/man/compareNA.Rd | 50 reproducible-1.2.10/reproducible/man/convertPaths.Rd | 92 reproducible-1.2.10/reproducible/man/copyFile.Rd | 162 reproducible-1.2.10/reproducible/man/cropInputs.Rd | 281 reproducible-1.2.10/reproducible/man/debugCache.Rd | 50 reproducible-1.2.10/reproducible/man/determineFilename.Rd | 311 reproducible-1.2.10/reproducible/man/digest.Rd | 52 reproducible-1.2.10/reproducible/man/dlGeneric.Rd | 82 reproducible-1.2.10/reproducible/man/dlGoogle.Rd | 126 reproducible-1.2.10/reproducible/man/dot-formalsNotInCurrentDots.Rd | 46 reproducible-1.2.10/reproducible/man/dot-removeCacheAtts.Rd | 36 reproducible-1.2.10/reproducible/man/dot-requireNamespace.Rd | 60 reproducible-1.2.10/reproducible/man/downloadFile.Rd | 206 reproducible-1.2.10/reproducible/man/extractFromArchive.Rd | 128 reproducible-1.2.10/reproducible/man/fastMask.Rd | 188 reproducible-1.2.10/reproducible/man/file.move.Rd | 38 reproducible-1.2.10/reproducible/man/fixErrors.Rd | 287 reproducible-1.2.10/reproducible/man/fixErrorsTerra.Rd |only reproducible-1.2.10/reproducible/man/grepSysCalls.Rd | 44 reproducible-1.2.10/reproducible/man/guessAtTarget.Rd | 62 reproducible-1.2.10/reproducible/man/isInteractive.Rd | 58 reproducible-1.2.10/reproducible/man/isWindows.Rd | 24 reproducible-1.2.10/reproducible/man/linkOrCopy.Rd | 170 reproducible-1.2.10/reproducible/man/listFilesInArchive.Rd | 36 reproducible-1.2.10/reproducible/man/makeMemoisable.Rd | 60 reproducible-1.2.10/reproducible/man/maskInputs.Rd | 269 reproducible-1.2.10/reproducible/man/mergeCache.Rd | 114 reproducible-1.2.10/reproducible/man/messageDF.Rd | 53 reproducible-1.2.10/reproducible/man/movedCache.Rd | 100 reproducible-1.2.10/reproducible/man/objSize.Rd | 197 reproducible-1.2.10/reproducible/man/paddedFloatToChar.Rd | 72 reproducible-1.2.10/reproducible/man/pipe.Rd | 234 reproducible-1.2.10/reproducible/man/pkgEnv.Rd | 32 reproducible-1.2.10/reproducible/man/postProcess.Rd | 564 - reproducible-1.2.10/reproducible/man/postProcessHelpers.Rd | 60 reproducible-1.2.10/reproducible/man/postProcessTerra.Rd |only reproducible-1.2.10/reproducible/man/preDigestByClass.Rd | 58 reproducible-1.2.10/reproducible/man/preProcess.Rd | 279 reproducible-1.2.10/reproducible/man/prefix.Rd | 76 reproducible-1.2.10/reproducible/man/prepInputs.Rd | 629 - reproducible-1.2.10/reproducible/man/prepareFileBackedRaster.Rd | 126 reproducible-1.2.10/reproducible/man/prepareOutput.Rd | 104 reproducible-1.2.10/reproducible/man/projectInputs.Rd | 284 reproducible-1.2.10/reproducible/man/purge.Rd | 90 reproducible-1.2.10/reproducible/man/reexports.Rd | 44 reproducible-1.2.10/reproducible/man/reproducible-package.Rd | 154 reproducible-1.2.10/reproducible/man/reproducibleOptions.Rd | 352 reproducible-1.2.10/reproducible/man/retry.Rd | 87 reproducible-1.2.10/reproducible/man/robustDigest.Rd | 360 reproducible-1.2.10/reproducible/man/search.Rd | 98 reproducible-1.2.10/reproducible/man/setSubAttrInList.Rd | 42 reproducible-1.2.10/reproducible/man/sortDotsUnderscoreFirst.Rd | 78 reproducible-1.2.10/reproducible/man/spatialClasses-class.Rd | 54 reproducible-1.2.10/reproducible/man/studyAreaName.Rd | 50 reproducible-1.2.10/reproducible/man/tagsByClass.Rd | 54 reproducible-1.2.10/reproducible/man/testForArchiveExtract.Rd | 48 reproducible-1.2.10/reproducible/man/unrarPath.Rd | 34 reproducible-1.2.10/reproducible/man/updateFilenameSlots.Rd | 84 reproducible-1.2.10/reproducible/man/viewCache.Rd | 444 reproducible-1.2.10/reproducible/man/writeFuture.Rd | 102 reproducible-1.2.10/reproducible/man/writeOutputs.Rd | 237 reproducible-1.2.10/reproducible/tests/test-all.R | 4 reproducible-1.2.10/reproducible/tests/testthat/helper-allEqual.R | 899 - reproducible-1.2.10/reproducible/tests/testthat/test-cache.R | 2760 ++--- reproducible-1.2.10/reproducible/tests/testthat/test-cacheArguments.R | 150 reproducible-1.2.10/reproducible/tests/testthat/test-cacheHelpers.R | 488 reproducible-1.2.10/reproducible/tests/testthat/test-checkPath.R | 146 reproducible-1.2.10/reproducible/tests/testthat/test-checksums.R | 176 reproducible-1.2.10/reproducible/tests/testthat/test-cloud.R | 520 - reproducible-1.2.10/reproducible/tests/testthat/test-cluster.R | 100 reproducible-1.2.10/reproducible/tests/testthat/test-copy.R | 206 reproducible-1.2.10/reproducible/tests/testthat/test-devMode.R | 156 reproducible-1.2.10/reproducible/tests/testthat/test-download.R | 20 reproducible-1.2.10/reproducible/tests/testthat/test-examples.R | 100 reproducible-1.2.10/reproducible/tests/testthat/test-filesMissingExtension.R | 148 reproducible-1.2.10/reproducible/tests/testthat/test-gis.R | 226 reproducible-1.2.10/reproducible/tests/testthat/test-misc.R | 626 - reproducible-1.2.10/reproducible/tests/testthat/test-multipleCacheRepo.R | 142 reproducible-1.2.10/reproducible/tests/testthat/test-postProcess.R | 722 - reproducible-1.2.10/reproducible/tests/testthat/test-postProcessTerra.R |only reproducible-1.2.10/reproducible/tests/testthat/test-preProcessDoesntWork.R | 290 reproducible-1.2.10/reproducible/tests/testthat/test-preProcessWorks.R | 928 - reproducible-1.2.10/reproducible/tests/testthat/test-prepInputs-large-files.R | 48 reproducible-1.2.10/reproducible/tests/testthat/test-prepInputs.R | 4152 ++++---- reproducible-1.2.10/reproducible/tests/testthat/test-prepInputsInNestedArchives.R | 466 reproducible-1.2.10/reproducible/tests/testthat/test-reproducibleVerbose.R | 48 reproducible-1.2.10/reproducible/tests/testthat/test-robustDigest.R | 48 reproducible-1.2.10/reproducible/vignettes/Cache-using-postgresql.Rmd | 200 reproducible-1.2.10/reproducible/vignettes/Intro-to-Cache.Rmd | 628 - reproducible-1.2.8/reproducible/man/checkGDALVersion.Rd |only reproducible-1.2.8/reproducible/man/getGDALVersion.Rd |only reproducible-1.2.8/reproducible/man/isTopLevelEnv.Rd |only reproducible-1.2.8/reproducible/tests/testthat/test-gdal.R |only 168 files changed, 32782 insertions(+), 31495 deletions(-)
Title: Evaluation of Tweedie Exponential Family Models
Description: Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005; <doi:10.1007/s11222-005-4070-y>) and the Fourier inversion (Dunn and Smyth, 2008; <doi:10.1007/s11222-007-9039-6>), and related methods.
Author: Peter K. Dunn [cre, aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between tweedie versions 2.3.3 dated 2021-01-20 and 2.3.5 dated 2022-08-17
DESCRIPTION | 13 MD5 | 34 - NAMESPACE | 3 NEWS.md | 491 ++++++++------- R/tweedie.R | 1596 +++++++++++++++++++++++++++++-------------------- build/partial.rdb |binary inst/CITATION | 17 man/AICtweedie.Rd | 6 man/dtweedie.Rd | 44 - man/dtweedie.dldphi.Rd | 24 man/dtweedie.saddle.Rd | 10 man/logLik.tweedie.Rd | 6 man/tweedie-package.Rd | 12 man/tweedie.convert.Rd | 2 man/tweedie.dev.Rd | 38 - man/tweedie.plot.Rd | 30 man/tweedie.profile.Rd | 10 src/tweedie.f | 9 18 files changed, 1346 insertions(+), 999 deletions(-)
Title: Prepare Reproducible Example Code via the Clipboard
Description: Convenience wrapper that uses the 'rmarkdown' package to
render small snippets of code to target formats that include both code
and output. The goal is to encourage the sharing of small,
reproducible, and runnable examples on code-oriented websites, such as
<https://stackoverflow.com> and <https://github.com>, or in email. The
user's clipboard is the default source of input code and the default
target for rendered output. 'reprex' also extracts clean, runnable R
code from various common formats, such as copy/paste from an R
session.
Author: Jennifer Bryan [aut, cre] ,
Jim Hester [aut] ,
David Robinson [aut],
Hadley Wickham [aut] ,
Christophe Dervieux [aut] ,
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between reprex versions 2.0.1 dated 2021-08-05 and 2.0.2 dated 2022-08-17
reprex-2.0.1/reprex/tests/testthat/test-filepaths.R |only reprex-2.0.1/reprex/tests/testthat/test-optionally.R |only reprex-2.0.1/reprex/tests/testthat/test-stringify-expression.R |only reprex-2.0.1/reprex/tests/testthat/test-undo.R |only reprex-2.0.2/reprex/DESCRIPTION | 70 -- reprex-2.0.2/reprex/MD5 | 133 ++-- reprex-2.0.2/reprex/NAMESPACE | 3 reprex-2.0.2/reprex/NEWS.md | 19 reprex-2.0.2/reprex/R/ensure.R | 10 reprex-2.0.2/reprex/R/highlight.R | 19 reprex-2.0.2/reprex/R/reprex-addin.R | 11 reprex-2.0.2/reprex/R/reprex-locale.R | 45 - reprex-2.0.2/reprex/R/reprex-options.R | 5 reprex-2.0.2/reprex/R/reprex-package.R | 7 reprex-2.0.2/reprex/R/reprex-undo.R | 13 reprex-2.0.2/reprex/R/reprex.R | 62 + reprex-2.0.2/reprex/R/reprex_document.R | 30 reprex-2.0.2/reprex/R/reprex_impl.R | 19 reprex-2.0.2/reprex/R/reprex_render.R | 35 - reprex-2.0.2/reprex/R/stringify_expression.R | 6 reprex-2.0.2/reprex/R/utils-clipboard.R | 12 reprex-2.0.2/reprex/R/utils-interactivity.R | 6 reprex-2.0.2/reprex/R/utils-io.R | 63 + reprex-2.0.2/reprex/R/utils-ui.R | 8 reprex-2.0.2/reprex/R/utils.R | 2 reprex-2.0.2/reprex/README.md | 13 reprex-2.0.2/reprex/build/vignette.rds |binary reprex-2.0.2/reprex/inst/WORDLIST | 7 reprex-2.0.2/reprex/inst/doc/reprex-dos-and-donts.R |only reprex-2.0.2/reprex/inst/doc/reprex-dos-and-donts.Rmd | 47 - reprex-2.0.2/reprex/inst/doc/reprex-dos-and-donts.html | 319 ++++++++-- reprex-2.0.2/reprex/man/figures/lifecycle-archived.svg | 22 reprex-2.0.2/reprex/man/figures/lifecycle-defunct.svg | 22 reprex-2.0.2/reprex/man/figures/lifecycle-deprecated.svg | 22 reprex-2.0.2/reprex/man/figures/lifecycle-experimental.svg | 22 reprex-2.0.2/reprex/man/figures/lifecycle-maturing.svg | 22 reprex-2.0.2/reprex/man/figures/lifecycle-questioning.svg | 22 reprex-2.0.2/reprex/man/figures/lifecycle-soft-deprecated.svg |only reprex-2.0.2/reprex/man/figures/lifecycle-stable.svg | 30 reprex-2.0.2/reprex/man/figures/lifecycle-superseded.svg | 22 reprex-2.0.2/reprex/man/reprex-package.Rd | 13 reprex-2.0.2/reprex/man/reprex.Rd | 38 - reprex-2.0.2/reprex/man/reprex_addin.Rd | 12 reprex-2.0.2/reprex/man/reprex_document.Rd | 8 reprex-2.0.2/reprex/man/reprex_locale.Rd | 45 - reprex-2.0.2/reprex/man/reprex_options.Rd | 24 reprex-2.0.2/reprex/man/reprex_render.Rd | 6 reprex-2.0.2/reprex/man/un-reprex.Rd | 22 reprex-2.0.2/reprex/tests/spelling.R | 9 reprex-2.0.2/reprex/tests/testthat/_snaps/input.md | 26 reprex-2.0.2/reprex/tests/testthat/_snaps/reprex_document.md | 11 reprex-2.0.2/reprex/tests/testthat/_snaps/utils-clipboard.md |only reprex-2.0.2/reprex/tests/testthat/_snaps/utils-io.md | 70 -- reprex-2.0.2/reprex/tests/testthat/_snaps/utils-ui.md | 18 reprex-2.0.2/reprex/tests/testthat/expressions.rds |binary reprex-2.0.2/reprex/tests/testthat/helper.R | 1 reprex-2.0.2/reprex/tests/testthat/setup.R | 9 reprex-2.0.2/reprex/tests/testthat/test-env.R | 2 reprex-2.0.2/reprex/tests/testthat/test-input.R | 8 reprex-2.0.2/reprex/tests/testthat/test-knitr-options.R | 1 reprex-2.0.2/reprex/tests/testthat/test-outfiles.R | 3 reprex-2.0.2/reprex/tests/testthat/test-reprex-options.R | 45 + reprex-2.0.2/reprex/tests/testthat/test-reprex-undo.R |only reprex-2.0.2/reprex/tests/testthat/test-reprex.R | 3 reprex-2.0.2/reprex/tests/testthat/test-reprex_document.R | 1 reprex-2.0.2/reprex/tests/testthat/test-stringify_expression.R |only reprex-2.0.2/reprex/tests/testthat/test-utils-clipboard.R | 2 reprex-2.0.2/reprex/tests/testthat/test-utils-io.R | 80 ++ reprex-2.0.2/reprex/vignettes/articles/datapasta-reprex.Rmd | 4 reprex-2.0.2/reprex/vignettes/articles/magic-reprex.Rmd | 12 reprex-2.0.2/reprex/vignettes/articles/rtf.Rmd | 2 reprex-2.0.2/reprex/vignettes/reprex-dos-and-donts.Rmd | 47 - 72 files changed, 1168 insertions(+), 502 deletions(-)
Title: A Poor Man's Dependency Free Recreation of 'dplyr'
Description: A replication of key functionality from 'dplyr' and the wider 'tidyverse' using only 'base'.
Author: Nathan Eastwood [aut, cre],
Etienne Bacher [ctb]
Maintainer: Nathan Eastwood <nathan.eastwood@icloud.com>
Diff between poorman versions 0.2.5 dated 2021-03-28 and 0.2.6 dated 2022-08-17
DESCRIPTION | 22 - MD5 | 79 +++-- NAMESPACE | 6 NEWS.md | 17 + R/across.R | 20 + R/arrange.R | 43 +- R/case_when.R | 4 R/coalesce.R | 2 R/cumulative.R | 2 R/distinct.R | 3 R/glimpse.R | 2 R/gluestick.R |only R/group_split.R | 6 R/lang.R | 2 R/lst.R |only R/mutate.R | 27 + R/pivot_longer.R |only R/pivot_wider.R |only R/replace_with.R | 3 R/select_positions.R | 4 R/union_all.R |only R/utils.R | 2 R/window_rank.R | 1 R/with_groups.R | 1 README.md | 4 build/vignette.rds |binary inst/doc/faq.html | 488 ++++++++++++++++++++++------------ inst/tinytest/test_across.R | 17 + inst/tinytest/test_arrange.R | 148 +++++++++- inst/tinytest/test_distinct.R | 15 - inst/tinytest/test_lst.R |only inst/tinytest/test_mutate.R | 11 inst/tinytest/test_pivot_longer.R |only inst/tinytest/test_pivot_wider.R |only inst/tinytest/test_rownames.R | 6 inst/tinytest/test_select_helpers.R | 6 inst/tinytest/test_select_positions.R | 13 inst/tinytest/test_union_all.R |only inst/tinytest/test_window_rank.R | 24 - man/across.Rd | 6 man/cummean.Rd | 2 man/figures/logo.png |binary man/lst.Rd |only man/pivot_longer.Rd |only man/pivot_wider.Rd |only man/poorman.Rd | 7 man/union_all.Rd |only 47 files changed, 689 insertions(+), 304 deletions(-)
Title: Build and Run Spatially Explicit Agent-Based Models
Description: Build and run spatially explicit
agent-based models using only the R platform. 'NetLogoR' follows the same
framework as the 'NetLogo' software
(Wilensky, 1999 <http://ccl.northwestern.edu/netlogo/>) and is a translation
in R of the structure and functions of 'NetLogo'.
'NetLogoR' provides new R classes to define model agents and functions to
implement spatially explicit agent-based models in the R environment.
This package allows benefiting of the fast and easy coding phase from the
highly developed 'NetLogo' framework, coupled with the versatility, power
and massive resources of the R software.
Examples of three models (Ants <http://ccl.northwestern.edu/netlogo/models/Ants>,
Butterfly (Railsback and Grimm, 2012) and Wolf-Sheep-Predation
<http://ccl.northwestern.edu/netlogo/models/WolfSheepPredation>) written using
'NetLogoR' are available. The 'NetLogo' code of the original version of these
models is provided alongside.
A programming guide inspired from the 'NetLogo' [...truncated...]
Author: Sarah Bauduin [aut] ,
Eliot J B McIntire [aut, cre] ,
Alex M Chubaty [aut] ,
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between NetLogoR versions 0.3.10 dated 2022-02-18 and 0.3.11 dated 2022-08-17
DESCRIPTION | 14 MD5 | 230 ++++----- NAMESPACE | 5 NEWS.md | 14 R/Agent-classes.R | 4 R/NetLogoR-package.R | 24 - R/agentMatrix-Class-methods.R | 86 +-- R/agentset-functions.R | 532 +++++++++++----------- R/function-arguments.R | 106 ++-- R/patch-functions.R | 294 ++++++------ R/plot.R | 10 R/quickPlot.R | 24 - R/spades-functions.R | 18 R/turtle-functions.R | 912 +++++++++++++++++++------------------- R/world-functions.R | 82 +-- R/worldNLR-classes-methods.R | 136 ++--- build/vignette.rds |binary inst/WORDLIST | 39 + inst/doc/NLR-Dictionary.html | 851 +++++++++++++++++++++++++++-------- inst/doc/ProgrammingGuide.html | 513 ++++++++++++++++++--- man/NLall.Rd | 11 man/NLany.Rd | 11 man/NLcount.Rd | 9 man/NLdist.Rd | 47 + man/NLset.Rd | 29 - man/NLwith.Rd | 29 - man/NLworldIndex.Rd | 2 man/PxcorPycorFromCell.Rd | 4 man/agentMatrix-bind-methods.Rd | 2 man/agentMatrix-show-methods.Rd | 6 man/bbox.Rd | 10 man/bk.Rd | 42 - man/canMove.Rd | 4 man/cellFromPxcorPycor.Rd | 2 man/clearPatches.Rd | 4 man/coordinates.Rd | 4 man/createOTurtles.Rd | 15 man/createTurtles.Rd | 17 man/createWorld.Rd | 19 man/die.Rd | 6 man/diffuse.Rd | 24 - man/downhill.Rd | 31 - man/dx.Rd | 8 man/dy.Rd | 8 man/extract-methods.Rd | 6 man/face.Rd | 31 - man/fargs.Rd | 14 man/fd.Rd | 36 - man/hatch.Rd | 17 man/home.Rd | 27 - man/inCone.Rd | 47 + man/inRadius.Rd | 42 - man/inspect.Rd | 6 man/isNLclass.Rd | 36 - man/layoutCircle.Rd | 23 man/left.Rd | 4 man/maxNof.Rd | 31 - man/maxOneOf.Rd | 39 - man/maxPxcor.Rd | 4 man/maxPycor.Rd | 4 man/minNof.Rd | 31 - man/minOneOf.Rd | 39 - man/minPxcor.Rd | 4 man/minPycor.Rd | 4 man/moveTo.Rd | 20 man/nOf.Rd | 59 +- man/neighbors.Rd | 30 - man/noPatches.Rd | 6 man/noTurtles.Rd | 6 man/of.Rd | 24 - man/oneOf.Rd | 54 +- man/other.Rd | 30 - man/pExist.Rd | 4 man/patch.Rd | 20 man/patchAhead.Rd | 16 man/patchAt.Rd | 29 - man/patchDistDir.Rd | 34 - man/patchHere.Rd | 12 man/patchLeft.Rd | 23 man/patchRight.Rd | 25 - man/patchSet.Rd | 6 man/patches.Rd | 8 man/plotMethods.Rd | 2 man/projNowhere.Rd | 2 man/quickPlottables-class.Rd | 4 man/randomPxcor.Rd | 4 man/randomPycor.Rd | 4 man/randomXYcor.Rd | 2 man/randomXcor.Rd | 4 man/randomYcor.Rd | 4 man/raster2world.Rd | 19 man/right.Rd | 4 man/setXY.Rd | 17 man/sortOn.Rd | 27 - man/spdf2turtles.Rd | 6 man/sprout.Rd | 27 - man/subHeadings.Rd | 25 - man/tExist.Rd | 8 man/towards.Rd | 52 +- man/turtle.Rd | 17 man/turtleSet.Rd | 12 man/turtles2spdf.Rd | 4 man/turtlesAt.Rd | 27 - man/turtlesOn.Rd | 28 - man/turtlesOwn.Rd | 6 man/updateList.Rd | 4 man/uphill.Rd | 31 - man/withMax.Rd | 24 - man/withMin.Rd | 24 - man/world2raster.Rd | 10 man/worldArray-class.Rd | 2 man/worldHeight.Rd | 4 man/worldMatrix-class.Rd | 16 man/worldWidth.Rd | 4 man/wrap.Rd | 4 tests/testthat/test-agentMatrix.R | 3 116 files changed, 3258 insertions(+), 2262 deletions(-)
Title: Global Envelopes
Description: Implementation of global envelopes for a set of general d-dimensional vectors T
in various applications. A 100(1-alpha)% global envelope is a band bounded by two
vectors such that the probability that T falls outside this envelope in any of the d
points is equal to alpha. Global means that the probability is controlled simultaneously
for all the d elements of the vectors. The global envelopes can be used for graphical
Monte Carlo and permutation tests where the test statistic is a multivariate vector or
function (e.g. goodness-of-fit testing for point patterns and random sets, functional
analysis of variance, functional general linear model, n-sample test of correspondence
of distribution functions), for central regions of functional or multivariate data (e.g.
outlier detection, functional boxplot) and for global confidence and prediction bands
(e.g. confidence band in polynomial regression, Bayesian posterior prediction). See
Myllymäki and Mrkvička (2020) <arXiv:1911.06583>,
Myl [...truncated...]
Author: Mari Myllymaeki [aut, cre],
Tomas Mrkvička [aut],
Pavel Grabarnik [ctb],
Ute Hahn [ctb],
Mikko Kuronen [ctb],
Michael Rost [ctb],
Henri Seijo [ctb]
Maintainer: Mari Myllymaeki <mari.myllymaki@luke.fi>
Diff between GET versions 0.2-5 dated 2022-01-14 and 0.3-1 dated 2022-08-17
DESCRIPTION | 22 ++++++----- MD5 | 62 ++++++++++++++++++------------- NAMESPACE | 12 ++++++ R/GET-package.r | 20 ++++++++-- R/adjusted_envelopes.r | 2 - R/appl_indeptest.r |only R/appl_localcor.r |only R/curve-set.r | 17 ++++++++ R/envelopes.r | 11 ++++- R/fboxplot.r | 2 - R/fclustering.r | 2 - R/fdr.r |only R/forder.r | 3 - R/glm.R | 29 +++++++++++--- R/graphfanova.r | 48 +++++++++++++++++++++--- R/plot_envelope_helper.R | 21 ++++++---- README.md | 12 +++++- inst/CITATION | 15 +++++++ inst/doc/GET.pdf |binary inst/doc/pointpatterns.pdf |binary man/GET-package.Rd | 20 ++++++++-- man/GET.cdf.Rd |only man/GET.contingency.Rd |only man/GET.localcor.Rd |only man/GET.necdf.Rd | 3 + man/GET.qq.Rd |only man/central_region.Rd | 3 + man/combined_scaled_MAD_envelope_test.Rd | 3 + man/fdr_envelope.Rd |only man/frank.fanova.Rd | 10 ++++- man/frank.flm.Rd | 7 +++ man/global_envelope_test.Rd | 3 + man/graph.fanova.Rd | 10 ++++- man/graph.flm.Rd | 7 +++ man/partial_forder.Rd | 2 - man/print.GET_contingency.Rd |only man/print.fdr_envelope.Rd |only 37 files changed, 263 insertions(+), 83 deletions(-)
Title: Evaluation of Binary Classifiers
Description: Evaluates the performance of binary classifiers. Computes
confusion measures (TP, TN, FP, FN), derived measures (TPR, FDR,
accuracy, F1, DOR, ..), and area under the curve. Outputs are well
suited for nested dataframes.
Author: Antoine Bichat [aut, cre]
Maintainer: Antoine Bichat <antoine.bichat@proton.me>
Diff between evabic versions 0.0.3 dated 2020-06-12 and 0.1.1 dated 2022-08-17
DESCRIPTION | 26 +++++++++++--------------- MD5 | 24 ++++++++++++------------ NEWS.md | 14 ++++++++++++++ R/area.R | 2 ++ R/helpers.R | 9 ++++++++- R/measures.R | 3 ++- README.md | 27 +++++++++------------------ inst/WORDLIST | 3 +-- man/area_rect.Rd | 1 + man/ebc_allmeasures.Rd | 3 ++- man/figures/README-roc-1.png |binary man/nl2c.Rd | 1 + man/rep_0.Rd | 1 + 13 files changed, 64 insertions(+), 50 deletions(-)
Title: Dyadic Network Analysis
Description: Contains functions for the MCMC simulation of dyadic network models j2 (Zijlstra, 2017, <doi:10.1080/0022250X.2017.1387858>) and p2 (Van Duijn, Snijders & Zijlstra, 2004, <doi: 10.1046/j.0039-0402.2003.00258.x>), the multilevel p2 model (Zijlstra, Van Duijn & Snijders (2009) <doi: 10.1348/000711007X255336>), and the bidirectional (multilevel) counterpart of the the multilevel p2 model as described in Zijlstra, Van Duijn & Snijders (2009) <doi: 10.1348/000711007X255336>, the (multilevel) b2 model.
Author: Bonne J.H. Zijlstra <B.J.H.Zijlstra@uva.nl>
Maintainer: Bonne J.H. Zijlstra <B.J.H.Zijlstra@uva.nl>
Diff between dyads versions 1.1.4 dated 2021-04-16 and 1.2.1 dated 2022-08-17
DESCRIPTION | 10 MD5 | 18 NAMESPACE | 50 +- R/internalFunctionsDyads.R | 921 +++++++++++++++++++++++++++------------------ R/p2ML.R |only build/partial.rdb |binary man/b2ML.Rd | 200 ++++----- man/dyads-package.Rd | 142 +++--- man/j2.Rd | 6 man/p2.Rd | 2 man/p2ML.Rd |only 11 files changed, 774 insertions(+), 575 deletions(-)
More information about SIRthresholded at CRAN
Permanent link
Title: SQLite Interface for R
Description: Embeds the SQLite database engine in R and
provides an interface compliant with the DBI package. The source for
the SQLite engine and for various extensions in a recent version is
included. System libraries will never be consulted because
this package relies on static linking for the plugins it includes;
this also ensures a consistent experience across all installations.
Author: Kirill Mueller [aut, cre] ,
Hadley Wickham [aut],
David A. James [aut],
Seth Falcon [aut],
D. Richard Hipp [ctb] ,
Dan Kennedy [ctb] ,
Joe Mistachkin [ctb] ,
SQLite Authors [ctb] ,
Liam Healy [ctb] ,
R Consortium [fnd],
RStudio [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between RSQLite versions 2.2.15 dated 2022-07-17 and 2.2.16 dated 2022-08-17
DESCRIPTION | 14 +++---- MD5 | 18 ++++----- NEWS.md | 5 ++ README.md | 2 - inst/doc/RSQLite.R | 2 - inst/doc/RSQLite.Rmd | 2 - inst/doc/RSQLite.html | 2 - src/vendor/sqlite3/sqlite3.c | 79 ++++++++++++++++++++----------------------- src/vendor/sqlite3/sqlite3.h | 6 +-- vignettes/RSQLite.Rmd | 2 - 10 files changed, 66 insertions(+), 66 deletions(-)
Title: (Robust) Mediation Analysis
Description: Perform mediation analysis via a fast-and-robust bootstrap test, as well as various other methods. Details on the implementation and code examples can be found in Alfons, Ates, and Groenen (2022) <doi:10.18637/jss.v103.i13>.
Author: Andreas Alfons [aut, cre] ,
Nufer Y. Ates [ctb]
Maintainer: Andreas Alfons <alfons@ese.eur.nl>
Diff between robmed versions 0.11.0 dated 2022-05-23 and 1.0.0 dated 2022-08-17
DESCRIPTION | 10 ++-- MD5 | 95 +++++++++++++++++++++--------------------- NEWS | 9 +++ R/BSG2014.R | 18 ++++--- R/ci_plot.R | 5 ++ R/control.R | 15 +++--- R/cov_Huber.R | 8 +-- R/cov_ML.R | 6 +- R/density_plot.R | 5 ++ R/ellipse_plot.R | 5 ++ R/fit_mediation.R | 29 +++++++----- R/plot.R | 5 ++ R/robmed-package.R | 10 +++- R/setup_ci_plot.R | 5 ++ R/setup_density_plot.R | 5 ++ R/setup_ellipse_plot.R | 5 ++ R/setup_weight_plot.R | 5 ++ R/summary.R | 10 +++- R/test_mediation.R | 64 +++++++++++++++------------- R/weight_plot.R | 5 ++ R/weights.R | 6 +- build/partial.rdb |binary build/vignette.rds |binary data/BSG2014.RData |binary inst/CITATION |only inst/doc/robmed-intro.R | 14 +++--- inst/doc/robmed-intro.Rnw | 54 +++++++++++------------ inst/doc/robmed-intro.pdf |binary man/BSG2014.Rd | 18 ++++--- man/ci_plot.Rd | 5 ++ man/cov_Huber.Rd | 8 +-- man/cov_ML.Rd | 6 +- man/cov_control.Rd | 2 man/density_plot.Rd | 5 ++ man/ellipse_plot.Rd | 5 ++ man/fit_mediation.Rd | 27 +++++++---- man/plot-methods.Rd | 5 ++ man/reg_control.Rd | 11 ++-- man/robmed-package.Rd | 10 +++- man/setup_ci_plot.Rd | 5 ++ man/setup_density_plot.Rd | 5 ++ man/setup_ellipse_plot.Rd | 5 ++ man/setup_weight_plot.Rd | 5 ++ man/summary.test_mediation.Rd | 10 +++- man/test_mediation.Rd | 64 +++++++++++++++------------- man/weight_plot.Rd | 5 ++ man/weights.cov_Huber.Rd | 6 +- vignettes/robmed-intro.Rnw | 54 +++++++++++------------ vignettes/robmed.bib | 59 ++++++++++++-------------- 49 files changed, 432 insertions(+), 281 deletions(-)
Title: Robust Land-Use Optimization
Description: Robust multi-criteria land-allocation optimization that explicitly accounts for the uncertainty of the indicators in the objective function. Solves the problem of allocating scarce land to various land-use options with regard to multiple, coequal indicators. The method aims to find the land allocation that represents the indicator composition with the best possible trade-off under uncertainty. optimLanduse includes the actual optimization procedure as described by Knoke et al. (2016) <doi:10.1038/ncomms11877> and the post-hoc calculation of the portfolio performance as presented by Gosling et al. (2020) <doi:10.1016/j.jenvman.2020.110248>.
Author: Kai Husmann [aut, cre] ,
Volker von Groß [aut] ,
Jasper Fuchs [aut] ,
Kai Boedeker [aut] ,
Goettingen University - Forest Economics and Sustainable Land-use
Planning [cph, fnd],
TUM School of Life Sciences - Forest Management [cph, fnd]
Maintainer: Kai Husmann <kai.husmann@uni-goettingen.de>
Diff between optimLanduse versions 1.0.0 dated 2022-04-08 and 1.1.0 dated 2022-08-17
DESCRIPTION | 12 MD5 | 34 - NEWS.md | 19 R/calcPerformance.R | 29 - R/dataPreparation.R | 29 - R/examples.R | 21 R/initScenario.R | 47 - R/solveScenario.R | 16 README.md | 1112 +++++++++++++++++++++++++++++++++++---- build/partial.rdb |binary inst/extdata/exampleEmpty.xlsx |only inst/extdata/exampleGosling.xlsx |binary man/calcPerformance.Rd | 24 man/dataPreparation.Rd | 27 man/exampleData.Rd | 13 man/figures/exampleGraphic.png |only man/figures/flowchart.png |binary man/initScenario.Rd | 37 - man/solveScenario.Rd | 12 19 files changed, 1194 insertions(+), 238 deletions(-)
Title: Nonlinear Regression for Agricultural Applications
Description: Additional nonlinear regression functions using self-start (SS) algorithms. One of the functions is the Beta growth function proposed by Yin et al. (2003) <doi:10.1093/aob/mcg029>. There are several other functions with breakpoints (e.g. linear-plateau, plateau-linear, exponential-plateau, plateau-exponential, quadratic-plateau, plateau-quadratic and bilinear), a non-rectangular hyperbola and a bell-shaped curve. Twenty eight (28) new self-start (SS) functions in total. This package also supports the publication 'Nonlinear regression Models and applications in agricultural research' by Archontoulis and Miguez (2015) <doi:10.2134/agronj2012.0506>, a book chapter with similar material <doi:10.2134/appliedstatistics.2016.0003.c15> and a publication by Oddi et. al. (2019) in Ecology and Evolution <doi:10.1002/ece3.5543>. The function 'nlsLMList' uses 'nlsLM' for fitting, but it is otherwise almost identical to 'nlme::nlsList'.In addition, this release of the package [...truncated...]
Author: Fernando Miguez [aut, cre] ,
Jose Pinheiro [ctb, cph] ,
Douglas Bates [ctb, cph] ,
R-core [ctb, cph]
Maintainer: Fernando Miguez <femiguez@iastate.edu>
Diff between nlraa versions 1.2 dated 2022-02-14 and 1.5 dated 2022-08-17
DESCRIPTION | 6 MD5 | 64 +-- NAMESPACE | 1 R/IA_tab.R | 67 ++- R/SSbgf.R | 23 + R/SSblin.R | 2 R/SSdlf.R | 2 R/SSexpf.R | 2 R/SSexpfp.R | 6 R/SSlinp.R | 2 R/SSmoh.R | 2 R/SSnrh.R | 2 R/SSpexpf.R | 4 R/SSplin.R | 2 R/SSpquad.R | 2 R/SSprofd.R | 2 R/SSquadp.R | 2 R/SSratio.R | 4 R/nlsLMList.R | 2 R/predict_nlme.R | 23 + R/predict_nls.R | 56 ++ R/simulate_gam.R | 2 README.md | 16 build/partial.rdb |binary inst/doc/Bootstrapping.html | 757 +++++++++++++++++++++++-------------- inst/doc/Confidence-Bands.html | 661 ++++++++++++++++++++------------ inst/doc/Models-and-Functions.html | 254 +++++++----- inst/doc/nlraa-AgronJ-paper.html | 268 +++++++------ inst/doc/nlraa.html | 304 +++++++++----- man/IA_tab.Rd | 23 - man/R2M.Rd | 2 man/predict_nlme.Rd | 15 man/predict_nls.Rd | 9 33 files changed, 1660 insertions(+), 927 deletions(-)
Title: Generalized Linear Models for Categorical Responses
Description: In statistical modeling, there is a wide variety of regression models for categorical dependent variables (nominal or ordinal data); yet, there is no software embracing all these models together in a uniform and generalized format. Following the methodology proposed by Peyhardi, Trottier, and Guédon (2015) <doi:10.1093/biomet/asv042>, we introduce 'GLMcat', an R package to estimate generalized linear models implemented under the unified specification (r, F, Z). Where r represents the ratio of probabilities (reference, cumulative, adjacent, or sequential), F the cumulative cdf function for the linkage, and Z, the design matrix.
Author: Lorena Leon [aut, cre],
Jean Peyhardi [aut],
Catherine Trottier [aut]
Maintainer: Lorena Leon <ylorenaleonv@gmail.com>
Diff between GLMcat versions 0.2.4 dated 2021-09-23 and 0.2.5 dated 2022-08-17
DESCRIPTION | 13 +++--- MD5 | 38 ++++++++++--------- NAMESPACE | 5 ++ NEWS | 10 +++-- R/GLMcat2.R | 39 +++++++++++++++++++- R/GLMcatMethods.R | 4 +- R/step.R |only R/zzz.R | 1 README.md | 4 +- data/DisturbedDreams.rda |binary inst/doc/Discrete_CM_examples.pdf |binary inst/doc/GLMcat_tutorial.R | 35 +++++++++-------- inst/doc/GLMcat_tutorial.Rmd | 31 ++++++++------- inst/doc/GLMcat_tutorial.pdf |binary man/discrete_cm.Rd | 5 ++ man/glmcat.Rd | 3 + man/step.Rd | 8 +++- src/cdf.cpp | 74 ++++++++++++-------------------------- tests |only vignettes/GLMcat_tutorial.Rmd | 31 ++++++++------- 20 files changed, 172 insertions(+), 129 deletions(-)