Title: Simulate Complex Traits from Genotypes
Description: Simulate complex traits given a SNP genotype matrix and model parameters (the desired heritability, number of causal loci, and either the true ancestral allele frequencies used to generate the genotypes or the mean kinship for a real dataset). Emphasis on avoiding common biases due to the use of estimated allele frequencies. The code selects random loci to be causal, constructs coefficients for these loci and random independent non-genetic effects, and can optionally generate random group effects. Traits can follow three models: random coefficients, fixed effect sizes, and infinitesimal (multivariate normal). GWAS method benchmarking functions are also provided. Described in Yao and Ochoa (2022) <doi:10.1101/2022.03.25.485885>.
Author: Alejandro Ochoa [aut, cre]
Maintainer: Alejandro Ochoa <alejandro.ochoa@duke.edu>
Diff between simtrait versions 1.0.21 dated 2021-08-16 and 1.1.0 dated 2022-08-22
DESCRIPTION | 10 MD5 | 49 +- NAMESPACE | 2 NEWS.md | 33 + R/check_labs.R |only R/cov_trait.R | 45 + R/pval_aucpr.R | 2 R/pval_infl.R | 7 R/pval_power_calib.R |only R/pval_srmsd.R | 6 R/pval_type_1_err.R |only R/sim_trait.R | 73 ++- R/sim_trait_mvn.R | 19 README.md | 6 build/vignette.rds |binary inst/doc/simtrait.R | 154 ++++++ inst/doc/simtrait.Rmd | 175 +++++++ inst/doc/simtrait.html | 933 +++++++++++++++++++---------------------- man/cov_trait.Rd | 22 man/pval_aucpr.Rd | 2 man/pval_infl.Rd | 6 man/pval_power_calib.Rd |only man/pval_srmsd.Rd | 6 man/pval_type_1_err.Rd |only man/sim_trait.Rd | 23 - man/sim_trait_mvn.Rd | 31 + tests/testthat/test-simtrait.R | 229 +++++++++- vignettes/simtrait.Rmd | 175 +++++++ 28 files changed, 1422 insertions(+), 586 deletions(-)
Title: Predictive (Classification and Regression) Models Homologator
Description: Methods to unify the different ways of creating predictive models and their different predictive formats for classification and regression. It includes
methods such as K-Nearest Neighbors Schliep, K. P. (2004) <doi:10.5282/ubm/epub.1769>, Decision Trees Leo Breiman, Jerome H. Friedman, Richard A. Olshen, Charles J. Stone (2017) <doi:10.1201/9781315139470>,
ADA Boosting Esteban Alfaro, Matias Gamez, Noelia García (2013) <doi:10.18637/jss.v054.i02>, Extreme Gradient Boosting Chen & Guestrin (2016) <doi:10.1145/2939672.2939785>,
Random Forest Breiman (2001) <doi:10.1023/A:1010933404324>, Neural Networks Venables, W. N., & Ripley, B. D. (2002) <ISBN:0-387-95457-0>,
Support Vector Machines Bennett, K. P. & Campbell, C. (2000) <doi:10.1145/380995.380999>, Bayesian Methods Gelman, A., Carlin, J. B., Stern, H. S., & Rubin, D. B. (1995) <doi:10.1201/9780429258411>,
Linear Discriminant Analysis Venables, W. N., & Ripley, B. D. ( [...truncated...]
Author: Oldemar Rodriguez R. [aut, cre],
Andres Navarro D. [aut],
Ariel Arroyo S. [aut],
Diego Jimenez A. [ctb]
Maintainer: Oldemar Rodriguez R. <oldemar.rodriguez@ucr.ac.cr>
Diff between traineR versions 1.7.4 dated 2022-04-29 and 2.0.4 dated 2022-08-22
DESCRIPTION | 14 - MD5 | 54 ++++--- NAMESPACE | 12 + R/Utilities.R | 105 +++++++++++++- R/general.indexes.R | 55 +++++-- R/predict.R | 270 +++++++++++++++++++++++++------------- R/train.R | 250 +++++++++++++++++++++++++++++------ R/traineR.R | 8 - man/contr.dummy.Rd | 11 + man/contr.metric.Rd |only man/contr.ordinal.Rd | 11 + man/dummy.Rd |only man/general.indexes.Rd | 20 +- man/numerical.predictive.power.Rd | 3 man/predict.gbm.prmdt.Rd |only man/train.ada.Rd | 1 man/train.adabag.Rd | 8 - man/train.bayes.Rd | 11 + man/train.gbm.Rd |only man/train.glm.Rd | 12 + man/train.glmnet.Rd | 11 + man/train.knn.Rd | 11 + man/train.lda.Rd | 2 man/train.nnet.Rd | 11 + man/train.qda.Rd | 4 man/train.randomForest.Rd | 11 + man/train.rpart.Rd | 11 + man/train.svm.Rd | 11 + man/train.xgboost.Rd | 12 + man/traineR.Rd | 8 - 30 files changed, 712 insertions(+), 225 deletions(-)
Title: A Collection of Methods for Singular Spectrum Analysis
Description: Methods and tools for Singular Spectrum Analysis including decomposition,
forecasting and gap-filling for univariate and multivariate time series.
General description of the methods with many examples can be found in the book
Golyandina (2018, <doi:10.1007/978-3-662-57380-8>).
See 'citation("Rssa")' for details.
Author: Anton Korobeynikov, Alex Shlemov, Konstantin Usevich, Nina Golyandina
Maintainer: Anton Korobeynikov <anton@korobeynikov.info>
Diff between Rssa versions 1.0.4 dated 2021-10-05 and 1.0.5 dated 2022-08-22
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- build |only man/Rssa-package.Rd | 2 +- man/hmatr.Rd | 2 +- man/reconstruct.Rd | 2 +- man/rforecast.Rd | 4 ++-- man/ssa.Rd | 5 ++--- man/vforecast.Rd | 4 ++-- 9 files changed, 20 insertions(+), 20 deletions(-)
Title: Computes Proximity in Large Sparse Matrices
Description: Computes proximity between rows or columns of large matrices efficiently in C++.
Functions are optimised for large sparse matrices using the Armadillo and Intel TBB libraries.
Among several built-in similarity/distance measures, computation of correlation,
cosine similarity and Euclidean distance is particularly fast.
Author: Kohei Watanabe [cre, aut, cph]
,
Robrecht Cannoodt [aut]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between proxyC versions 0.3.0 dated 2022-08-05 and 0.3.1 dated 2022-08-22
DESCRIPTION | 6 +-- MD5 | 12 +++---- NEWS.md | 9 +++++ R/proxy.R | 44 +++++++++++++++++++++++----- man/simil.Rd | 33 +++++++++++++++++++-- src/pair.cpp | 14 +++++++++ tests/testthat/test-dist.R | 69 +++++++++++++++++++++++++++++++++++++++++++++ 7 files changed, 166 insertions(+), 21 deletions(-)
Title: Distributional Semantic Models in R
Description: An interactive laboratory for research on distributional semantic models ('DSM',
see <https://en.wikipedia.org/wiki/Distributional_semantics> for more information).
Author: Stephanie Evert [cre, aut]
Maintainer: Stephanie Evert <stephanie.evert@fau.de>
Diff between wordspace versions 0.2-7 dated 2022-02-22 and 0.2-8 dated 2022-08-22
DESCRIPTION | 13 +- MD5 | 77 ++++++++--------- NEWS | 6 + R/dsm_canonical_matrix.R | 14 ++- R/read_dsm_ucs.R | 4 build/vignette.rds |binary data/DSM_GoodsMatrix.rda |binary data/DSM_HieroglyphsMatrix.rda |binary data/DSM_SingularValues.rda |binary data/DSM_TermContext.rda |binary data/DSM_TermContextMatrix.rda |binary data/DSM_TermTerm.rda |binary data/DSM_TermTermMatrix.rda |binary data/DSM_Vectors.rda |binary data/DSM_VerbNounTriples_BNC.rda |binary data/ESSLLI08_Nouns.rda |binary data/RG65.rda |binary data/SemCorWSD.rda |binary data/WordSim353.rda |binary inst/doc/wordspace-intro.html | 135 ++++++++++++++++--------------- man/DSM_VerbNounTriples_BNC.Rd | 2 man/eval_clustering.Rd | 2 src/parts/utilities.cpp | 8 - src/wordspace.cpp | 8 - tests/testthat.R | 3 tests/testthat/test_canonical.R |only tests/testthat/test_context_vectors.R | 15 +-- tests/testthat/test_convenience.R | 6 - tests/testthat/test_dist_matrix.R | 10 +- tests/testthat/test_dsm.R | 1 tests/testthat/test_dsm_projection.R | 10 +- tests/testthat/test_dsm_score.R | 33 +++---- tests/testthat/test_evaluation.R | 1 tests/testthat/test_export.R | 1 tests/testthat/test_file_formats.R | 3 tests/testthat/test_nearest_neighbours.R | 9 -- tests/testthat/test_norms.R | 25 ++--- tests/testthat/test_pair_distances.R | 25 ++--- tests/testthat/test_scale_margins.R | 10 +- tests/testthat/test_subset.R | 1 40 files changed, 212 insertions(+), 210 deletions(-)
Title: A Dynamic Tile Server for R
Description: Makes it possible to serve map tiles for web maps (e.g. leaflet) based on a function or a stars object without having to render them in advance. This enables parallelization of the rendering, separating the data source and visualization location and to provide web services.
Author: Bart Kranstauber [aut, cre]
Maintainer: Bart Kranstauber <b.kranstauber@uva.nl>
Diff between starsTileServer versions 0.1 dated 2022-01-21 and 0.1.1 dated 2022-08-22
DESCRIPTION | 9 MD5 | 36 +-- README.md | 33 ++- build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/upscaling.R | 2 inst/doc/upscaling.Rmd | 2 inst/doc/upscaling.html | 252 ++++++++++++++++++++++++- inst/doc/using_functions.R | 2 inst/doc/using_functions.Rmd | 4 inst/doc/using_functions.html | 313 +++++++++++++++++++++++++++++--- inst/doc/using_shiny.R | 26 +- inst/doc/using_shiny.Rmd | 26 +- inst/doc/using_shiny.html | 262 ++++++++++++++++++++++++-- man/figures/README-plot_map_image-1.png |binary man/starsTileServer.Rd | 124 ++++++------ vignettes/upscaling.Rmd | 2 vignettes/using_functions.Rmd | 4 vignettes/using_shiny.Rmd | 26 +- 19 files changed, 913 insertions(+), 211 deletions(-)
More information about starsTileServer at CRAN
Permanent link
Title: Multivariate Analysis of Spatial Data Using a Unifying Spatial
Fusion Framework
Description: Multivariate modelling of geostatistical (point), lattice (areal) and point pattern data in a unifying spatial fusion framework. Details are given in Wang and Furrer (2021) <doi:10.1016/j.csda.2021.107240>. Model inference is done using either 'Stan' <https://mc-stan.org/> or 'INLA' <https://www.r-inla.org/>.
Author: Craig Wang [aut, cre] ,
Reinhard Furrer [ctb]
Maintainer: Craig Wang <craigwang247@gmail.com>
Diff between spatialfusion versions 0.6-5 dated 2022-01-25 and 0.6-6 dated 2022-08-22
DESCRIPTION | 13 +++++---- MD5 | 47 +++++++++++++++++------------------ NAMESPACE | 6 ++-- NEWS.md | 8 ++++- R/fusionData.R | 16 +++++------ R/fusionFit.R | 4 +- R/fusionPlot.R | 2 - R/fusionPred.R | 8 ++--- R/fusionSimulate.R | 30 ++++++++++------------ R/fusionStan.R | 4 +- R/fusionSummary.R | 2 - R/voronoiPolygons.R |only R/zzz.R | 4 +- build/partial.rdb |binary man/fitted.Rd | 2 - man/fusion.Rd | 12 +++----- man/fusion.dinla.Rd | 2 - man/fusion.dstan.Rd | 14 ++++------ man/fusionSimulate.Rd | 5 +-- man/plot.Rd | 2 - man/predict.Rd | 2 - man/spatialfusion-package.Rd | 6 ++-- man/summary.Rd | 2 - tests/testthat/test.R | 3 -- vignettes/spatialfusion_vignette.Rmd | 4 +- 25 files changed, 99 insertions(+), 99 deletions(-)
Title: Safely Access the RStudio API
Description: Access the RStudio API (if available) and provide informative error
messages when it's not.
Author: Kevin Ushey [aut, cre],
JJ Allaire [aut],
Hadley Wickham [aut],
Gary Ritchie [aut],
RStudio [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between rstudioapi versions 0.13 dated 2020-11-12 and 0.14 dated 2022-08-22
rstudioapi-0.13/rstudioapi/man/launcher.Rd |only rstudioapi-0.14/rstudioapi/DESCRIPTION | 13 rstudioapi-0.14/rstudioapi/MD5 | 102 ++-- rstudioapi-0.14/rstudioapi/NAMESPACE | 5 rstudioapi-0.14/rstudioapi/NEWS.md | 36 + rstudioapi-0.14/rstudioapi/R/code.R | 38 - rstudioapi-0.14/rstudioapi/R/commands.R | 107 ++++ rstudioapi-0.14/rstudioapi/R/dialogs.R | 2 rstudioapi-0.14/rstudioapi/R/document-api.R | 31 + rstudioapi-0.14/rstudioapi/R/document-methods.R | 12 rstudioapi-0.14/rstudioapi/R/jobs.R | 43 - rstudioapi-0.14/rstudioapi/R/launcher-functions.R | 224 +++++---- rstudioapi-0.14/rstudioapi/R/remote.R | 15 rstudioapi-0.14/rstudioapi/R/stubs.R | 23 rstudioapi-0.14/rstudioapi/build/vignette.rds |binary rstudioapi-0.14/rstudioapi/inst/doc/dialogs.html | 173 +++---- rstudioapi-0.14/rstudioapi/inst/doc/document-manipulation.html | 178 +++---- rstudioapi-0.14/rstudioapi/inst/doc/introduction.html | 65 -- rstudioapi-0.14/rstudioapi/inst/doc/projects.html | 162 +++--- rstudioapi-0.14/rstudioapi/inst/doc/r-session.R | 23 rstudioapi-0.14/rstudioapi/inst/doc/r-session.Rmd | 33 + rstudioapi-0.14/rstudioapi/inst/doc/r-session.html | 223 +++++---- rstudioapi-0.14/rstudioapi/inst/doc/terminal.html | 233 +++++----- rstudioapi-0.14/rstudioapi/inst/doc/visual-mode.html | 206 ++++---- rstudioapi-0.14/rstudioapi/man/build-tools.Rd | 4 rstudioapi-0.14/rstudioapi/man/executeCommand.Rd | 4 rstudioapi-0.14/rstudioapi/man/isJob.Rd |only rstudioapi-0.14/rstudioapi/man/jobAdd.Rd | 17 rstudioapi-0.14/rstudioapi/man/jobAddOutput.Rd | 4 rstudioapi-0.14/rstudioapi/man/jobAddProgress.Rd | 4 rstudioapi-0.14/rstudioapi/man/jobRemove.Rd | 4 rstudioapi-0.14/rstudioapi/man/jobRunScript.Rd | 2 rstudioapi-0.14/rstudioapi/man/jobSetProgress.Rd | 4 rstudioapi-0.14/rstudioapi/man/jobSetState.Rd | 4 rstudioapi-0.14/rstudioapi/man/jobSetStatus.Rd | 4 rstudioapi-0.14/rstudioapi/man/launcherAvailable.Rd |only rstudioapi-0.14/rstudioapi/man/launcherConfig.Rd | 19 rstudioapi-0.14/rstudioapi/man/launcherContainer.Rd | 17 rstudioapi-0.14/rstudioapi/man/launcherControlJob.Rd | 20 rstudioapi-0.14/rstudioapi/man/launcherGetInfo.Rd |only rstudioapi-0.14/rstudioapi/man/launcherGetJob.Rd | 22 rstudioapi-0.14/rstudioapi/man/launcherGetJobs.Rd |only rstudioapi-0.14/rstudioapi/man/launcherHostMount.Rd | 17 rstudioapi-0.14/rstudioapi/man/launcherNfsMount.Rd | 17 rstudioapi-0.14/rstudioapi/man/launcherPlacementConstraint.Rd | 20 rstudioapi-0.14/rstudioapi/man/launcherResourceLimit.Rd | 17 rstudioapi-0.14/rstudioapi/man/launcherSubmitJob.Rd | 21 rstudioapi-0.14/rstudioapi/man/launcherSubmitR.Rd | 21 rstudioapi-0.14/rstudioapi/man/registerCommandCallback.Rd |only rstudioapi-0.14/rstudioapi/man/registerCommandStreamCallback.Rd |only rstudioapi-0.14/rstudioapi/man/rstudio-documents.Rd | 14 rstudioapi-0.14/rstudioapi/man/rstudio-editors.Rd | 6 rstudioapi-0.14/rstudioapi/man/sendToConsole.Rd | 11 rstudioapi-0.14/rstudioapi/man/sourceMarkers.Rd | 5 rstudioapi-0.14/rstudioapi/man/unregisterCommandCallback.Rd |only rstudioapi-0.14/rstudioapi/vignettes/r-session.Rmd | 33 + 56 files changed, 1325 insertions(+), 933 deletions(-)
Title: Calculates Disproportionate Impact When Binary Success Data are
Disaggregated by Subgroups
Description: Implements methods for calculating disproportionate impact: the percentage point gap, proportionality index, and the 80% index.
California Community Colleges Chancellor's Office (2017). Percentage Point Gap Method. <https://www.cccco.edu/-/media/CCCCO-Website/About-Us/Divisions/Digital-Innovation-and-Infrastructure/Research/Files/PercentagePointGapMethod2017.ashx>.
California Community Colleges Chancellor's Office (2014). Guidelines for Measuring Disproportionate Impact in Equity Plans. <https://www.cccco.edu/-/media/CCCCO-Website/Files/DII/guidelines-for-measuring-disproportionate-impact-in-equity-plans-tfa-ada.pdf>.
Author: Vinh Nguyen [aut, cre]
Maintainer: Vinh Nguyen <nguyenvq714@gmail.com>
Diff between DisImpact versions 0.0.18 dated 2022-06-07 and 0.0.19 dated 2022-08-22
DESCRIPTION | 6 MD5 | 20 +-- NEWS | 2 inst/doc/DI-On-Long-Summarized-Data.html | 29 ++-- inst/doc/Intersectionality.html | 30 ++-- inst/doc/Multi-Ethnicity.html | 30 ++-- inst/doc/Scaling-DI-Calculations.R | 37 ++++++ inst/doc/Scaling-DI-Calculations.Rmd | 50 ++++++++ inst/doc/Scaling-DI-Calculations.html | 187 +++++++++++++++++++++++-------- inst/doc/Tutorial.html | 64 +++++----- vignettes/Scaling-DI-Calculations.Rmd | 50 ++++++++ 11 files changed, 372 insertions(+), 133 deletions(-)
Title: Access the 'Spark Catalog' API via 'sparklyr'
Description: Gain access to the 'Spark Catalog' API making use of the 'sparklyr' API. 'Catalog' <https://spark.apache.org/docs/2.4.3/api/java/org/apache/spark/sql/catalog/Catalog.html> is the interface for managing a metastore (aka metadata catalog) of relational entities (e.g. database(s), tables, functions, table columns and temporary views).
Author: Nathan Eastwood [aut, cre]
Maintainer: Nathan Eastwood <nathan.eastwood@icloud.com>
Diff between catalog versions 0.1.0 dated 2021-03-20 and 0.1.1 dated 2022-08-22
DESCRIPTION | 11 MD5 | 11 README.md | 39 inst/tinytest/derby.log | 12 inst/tinytest/logs/log4j.spark.log | 2339 +------------------------- inst/tinytest/logs/log4j.spark.log.2021-03-18 |only man/create_table.Rd | 4 7 files changed, 193 insertions(+), 2223 deletions(-)
Title: API Wrapper for the Canadian COVID-19 Tracker
Description: Provides R functions to GET data from the Canadian COVID-19 tracker
API <https://api.covid19tracker.ca>.
Author: Taylor Dunn [aut, cre]
Maintainer: Taylor Dunn <t.dunn19@gmail.com>
Diff between canadacovid versions 0.3.3 dated 2022-02-07 and 0.3.4 dated 2022-08-22
DESCRIPTION | 8 - MD5 | 14 +- NEWS.md | 4 R/reports.R | 225 ++++++++++++++++++-------------------- README.md | 159 +++++++++++++------------- man/get_reports.Rd | 1 tests/testthat/test-reports.R | 4 tests/testthat/test-vaccination.R | 15 +- 8 files changed, 215 insertions(+), 215 deletions(-)
Title: Tools for 'iNZight'
Description: Provides a collection of wrapper functions for common variable and dataset manipulation workflows primarily used by 'iNZight', a graphical user interface providing easy exploration and visualisation of data for students of statistics, available in both desktop and online versions. Additionally, many of the functions return the 'tidyverse' code used to obtain the result in an effort to bridge the gap between GUI and coding.
Author: Tom Elliott [aut, cre] ,
Daniel Barnett [aut],
Owen Jin [aut],
Yiwen He [aut],
Christoph Knopf [ctb],
Akshay Gupta [ctb],
Lushi Cai [ctb]
Maintainer: Tom Elliott <tom.elliott@auckland.ac.nz>
Diff between iNZightTools versions 1.12.2 dated 2022-01-18 and 1.12.3 dated 2022-08-22
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/import_data.R | 30 +++++++++++++++++++----------- R/validate_dataset.R | 2 +- man/aggregateData.Rd | 4 +++- man/as_survey_spec.Rd | 4 ++-- man/import_survey.Rd | 18 ++++++++++++------ man/smart_read.Rd | 13 ++++++++++++- tests/testthat/test_smart_read.R | 2 ++ 9 files changed, 63 insertions(+), 34 deletions(-)
Title: Create HTML Content with Bootstrap 5 Classes and Layouts
Description: Functions are pre-configured to utilize Bootstrap 5 classes and
HTML structures to create Bootstrap-styled HTML quickly and easily. Includes
functions for creating common Bootstrap elements such as containers, rows, cols,
navbars, etc. Intended to be used with the html5 package. Learn more at
<https://getbootstrap.com/>.
Author: Timothy Conwell
Maintainer: Timothy Conwell <timconwell@gmail.com>
Diff between bsTools versions 1.0.3 dated 2022-08-08 and 1.0.4 dated 2022-08-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/bsTools2.R | 3 +++ man/bs_doc.Rd | 3 +++ 4 files changed, 12 insertions(+), 6 deletions(-)
Title: Poisson Network Autoregressive Models
Description: Quasi likelihood-based methods for estimating Poisson Network Autoregression with p lags, PNAR, following generalized linear models are provided. PNAR models with the identity and with the logarithmic link function are allowed. The inclusion of exogenous covariates is also possible. Moreover, it provides tools for testing the linearity of linear PNAR model versus several nonlinear alternatives. Finally, it allows generating multivariate count distributions, from linear and nonlinear PNAR models, where the dependence between Poisson random variables is generated by suitable copulas. References include: Armillotta, M. and K. Fokianos (2022a). Poisson network autoregression. <arXiv:2104.06296>. Armillotta, M. and K. Fokianos (2022b). Testing linearity for network autoregressive models. <arXiv:2202.03852>.
Author: Michail Tsagris [aut, cre],
Mirko Armillotta [aut, cph],
Konstantinos Fokianos [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between PNAR versions 1.0 dated 2022-06-08 and 1.1 dated 2022-08-22
DESCRIPTION | 8 ++-- MD5 | 70 +++++++++++++++++++------------------- NAMESPACE | 14 +++---- R/global_optimise_LM_stnarpq.R | 24 ++++++++----- R/global_optimise_LM_tnarpq.R | 50 +++++++++++++++++++-------- R/lin_estimnarpq.R | 6 ++- R/log_lin_estimnarpq.R | 9 +++- R/poisson.MODpq.R | 2 + R/poisson.MODpq.log.R | 5 ++ R/poisson.MODpq.nonlin.R | 2 + R/poisson.MODpq.stnar.R | 2 + R/poisson.MODpq.tnar.R | 2 + R/score_test_nonlinpq_h0.R | 2 + R/score_test_stnarpq_DV.R | 29 +++++++++------ R/score_test_stnarpq_j.R | 13 +++++-- R/score_test_tnarpq_j.R | 47 ++++++++++++++++++------- man/PNAR-package.Rd | 4 +- man/adja.Rd | 2 - man/adja_gnp.Rd | 2 - man/crime.Rd | 2 - man/crime_W.Rd | 2 - man/getN.Rd | 2 - man/global_optimise_LM_stnarpq.Rd | 2 - man/global_optimise_LM_tnarpq.Rd | 4 +- man/lin_estimnarpq.Rd | 2 - man/log_lin_estimnarpq.Rd | 2 - man/poisson.MODpq.Rd | 2 - man/poisson.MODpq.log.Rd | 2 - man/poisson.MODpq.nonlin.Rd | 2 - man/poisson.MODpq.stnar.Rd | 2 - man/poisson.MODpq.tnar.Rd | 2 - man/rcopula.Rd | 2 - man/score_test_nonlinpq_h0.Rd | 2 - man/score_test_stnarpq_DV.Rd | 2 - man/score_test_stnarpq_j.Rd | 2 - man/score_test_tnarpq_j.Rd | 4 +- 36 files changed, 209 insertions(+), 122 deletions(-)
Title: Turn Images into Data Sets
Description: The goal of 'image2data' is to extract images and return
them into a data set,
especially for teaching data manipulation and data visualization.
Basically, the eponymous function takes an
image file ('png', 'tiff', 'jpeg', 'bmp') and turn it into a data set,
pixels being rows (subjects) and columns (variables) being their coordinate positions (x- and y-axis) and their respective color (in hex codes).
The function can return a complete image or a range of color (i.e., contour, silhouette).
The data can then be manipulated as would any data set by either creating other related variables (to hide the image) or as a genuine toy data set.
Author: P.-O. Caron [aut, cre, cph] ,
Alexandre Dufresne [aut, cph]
Maintainer: P.-O. Caron <pocaron19@gmail.com>
Diff between image2data versions 1.0.0 dated 2022-02-24 and 1.0.1 dated 2022-08-22
DESCRIPTION | 6 +++--- LICENSE | 4 ++-- MD5 | 7 ++++--- R/image2data.R | 19 +++++++++++++++++-- inst/extdata/pigeon.png |only 5 files changed, 26 insertions(+), 10 deletions(-)
Title: Import and Export 'SPSS', 'Stata' and 'SAS' Files
Description: Import foreign statistical formats into R via the embedded
'ReadStat' C library, <https://github.com/WizardMac/ReadStat>.
Author: Hadley Wickham [aut, cre],
Evan Miller [aut, cph] ,
Danny Smith [aut],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between haven versions 2.5.0 dated 2022-04-15 and 2.5.1 dated 2022-08-22
DESCRIPTION | 8 ++--- MD5 | 26 +++++++++--------- NEWS.md | 12 ++++++++ R/haven-spss.R | 12 +++++++- R/labelled-pillar.R | 2 - inst/doc/semantics.html | 43 ++++++++++++++++++------------- man/haven-package.Rd | 4 +- src/DfReader.cpp | 24 ++++++++--------- src/DfWriter.cpp | 9 +++--- src/cpp11.cpp | 40 ++++++++++++++-------------- tests/testthat/_snaps/haven-spss.md | 7 +++++ tests/testthat/_snaps/labelled-pillar.md | 28 ++++++++++---------- tests/testthat/test-haven-sas.R | 9 +++++- tests/testthat/test-haven-spss.R | 9 ++++++ 14 files changed, 142 insertions(+), 91 deletions(-)
Title: Dixon's Ratio Test for Outlier Detection
Description: For outlier detection in small and normally distributed
samples the ratio test of Dixon (Q-test) can be used. Density,
distribution function, quantile function and random generation
for Dixon's ratio statistics are provided as wrapper functions.
The core applies McBane's Fortran functions <doi:10.18637/jss.v016.i03>
that use Gaussian quadrature for a numerical solution.
Author: Thorsten Pohlert [aut, cre] ,
George C. McBane [ctb]
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between dixonTest versions 1.0.3 dated 2021-05-20 and 1.0.4 dated 2022-08-22
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/Dixon.R | 2 +- build/partial.rdb |binary inst/NEWS.Rd | 7 +++++++ man/Dixon.Rd | 2 +- 6 files changed, 19 insertions(+), 12 deletions(-)
Title: Semiparametric Spatial Filtering with Eigenvectors in
(Generalized) Linear Models
Description: Tools to decompose (transformed) spatial connectivity matrices and perform supervised or unsupervised semiparametric spatial filtering in a regression framework. The package supports unsupervised spatial filtering in standard linear as well as some generalized linear regression models.
Author: Sebastian Juhl [aut, cre]
Maintainer: Sebastian Juhl <sebastian.juhl@t-online.de>
Diff between spfilteR versions 1.1.4 dated 2022-03-09 and 1.1.5 dated 2022-08-22
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 6 ++++++ R/glmFilter.R | 16 ++++++++-------- R/lmFilter.R | 16 ++++++++-------- inst/doc/spfilteR_vignette.html | 26 +++++++++++++++++--------- man/MI.vec.Rd | 2 -- man/glmFilter.Rd | 16 ++++++++-------- man/lmFilter.Rd | 16 ++++++++-------- 9 files changed, 67 insertions(+), 55 deletions(-)
Title: Tidy Statistical Inference
Description: The objective of this package is to perform
inference using an expressive statistical grammar that coheres with
the tidy design framework.
Author: Andrew Bray [aut],
Chester Ismay [aut] ,
Evgeni Chasnovski [aut] ,
Simon Couch [aut, cre] ,
Ben Baumer [aut] ,
Mine Cetinkaya-Rundel [aut] ,
Ted Laderas [ctb] ,
Nick Solomon [ctb],
Johanna Hardin [ctb],
Albert Y. Kim [ctb] ,
Neal Fultz [ctb],
Doug Fr [...truncated...]
Maintainer: Simon Couch <simonpatrickcouch@gmail.com>
Diff between infer versions 1.0.2 dated 2022-06-10 and 1.0.3 dated 2022-08-22
DESCRIPTION | 8 - MD5 | 30 +-- NEWS.md | 4 R/infer.R | 2 inst/doc/anova.html | 21 +- inst/doc/chi_squared.html | 19 +- inst/doc/infer.html | 13 + inst/doc/observed_stat_examples.R | 30 +++ inst/doc/observed_stat_examples.Rmd | 50 ++++++ inst/doc/observed_stat_examples.html | 272 +++++++++++++++++++---------------- inst/doc/t_test.html | 25 ++- man/fit.infer.Rd | 20 +- man/generate.Rd | 20 +- man/infer.Rd | 6 man/observe.Rd | 6 vignettes/observed_stat_examples.Rmd | 50 ++++++ 16 files changed, 394 insertions(+), 182 deletions(-)
Title: Chromatographic Data Analysis Toolset
Description: Tools for high-throughput analysis of HPLC-DAD/UV
chromatograms (or similar data). Includes functions for preprocessing, alignment,
peak-finding and fitting, peak-table construction, data-visualization, etc.
Preprocessing and peak-table construction follow the rough formula laid out
in alsace (Wehrens, R., Bloemberg, T.G., and Eilers P.H.C., 2015.
<doi:10.1093/bioinformatics/btv299>. Alignment of chromatograms is available
using parametric time warping (ptw) (Wehrens, R., Bloemberg, T.G., and Eilers
P.H.C. 2015. <doi:10.1093/bioinformatics/btv299>) or variable penalty dynamic
time warping (VPdtw) (Clifford, D., & Stone, G. 2012. <doi:10.18637/jss.v047.i08>).
Peak-finding uses the algorithm by Tom O'Haver
<http://terpconnect.umd.edu/~toh/spectrum/PeakFindingandMeasurement.htm>.
Peaks are then fitted to a gaussian or exponential-gaussian hybrid peak shape
using non-linear least squares (Lan, K. & Jorgenson, J. W. 2001.
<doi:10.1016/S0021-9673(01)00594-5 [...truncated...]
Author: Ethan Bass [aut, cre]
Maintainer: Ethan Bass <ethanbass@gmail.com>
Diff between chromatographR versions 0.4.1 dated 2022-05-19 and 0.4.3 dated 2022-08-22
DESCRIPTION | 14 - MD5 | 74 +++-- NAMESPACE | 6 NEWS.md | 25 +- R/attach_metadata.R | 18 - R/chromatographR-package.R | 2 R/cluster_spectra.R | 108 ++++++-- R/combine_peaks.R | 12 R/correct_rt.R | 55 ++-- R/filter_peaks.R | 114 ++++++++- R/get_peaks.R | 66 ++++- R/get_peaktable.R | 31 +- R/load_chroms.R | 15 - R/plot_spectrum.R | 200 ++++++++++------ R/preprocess.R | 20 - README.md | 37 ++ build/partial.rdb |binary build/vignette.rds |binary data/pk_tab.RData |binary inst/CITATION | 12 inst/WORDLIST | 14 - inst/doc/chromatographR.R | 10 inst/doc/chromatographR.Rmd | 30 +- inst/doc/chromatographR.html | 506 ++++++++++++++++++++++++++++++++++++----- man/chromatographR-package.Rd | 2 man/cluster_spectra.Rd | 68 ++++- man/combine_peaks.Rd | 3 man/correct_rt.Rd | 20 - man/filter_peaks.Rd | 14 - man/filter_peaktable.Rd |only man/get_peaks.Rd | 19 + man/get_peaktable.Rd | 6 man/preprocess.Rd | 11 man/read_chroms.Rd |only tests/testthat/_snaps |only tests/testthat/test-pipeline.R | 228 +++++++++++++++++- tests/testthat/testdata |only vignettes/chromatographR.Rmd | 30 +- 38 files changed, 1384 insertions(+), 386 deletions(-)
More information about chromatographR at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-03 0.2.3
2016-04-11 0.2.2
2015-08-03 0.2.1
2015-04-28 0.2
Title: Subtests Using Algorithmic Rummaging Techniques
Description: Construct subtests from a pool of items by using ant-colony-optimization, genetic algorithms, brute force, or random sampling.
Schultze (2017) <doi:10.17169/refubium-622>.
Author: Martin Schultze [aut, cre],
Johanna Schueller [ctb]
Maintainer: Martin Schultze <schultze@psych.uni-frankfurt.de>
Diff between stuart versions 0.10.0 dated 2022-05-23 and 0.10.1 dated 2022-08-22
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- R/bf.cycle.R | 6 +++++- R/extractobjective.R | 4 +--- R/fitness.R | 6 +++++- R/gene.R | 2 +- R/kfold.R | 6 +++--- R/print.summary.stuartKfold.R | 2 +- R/run.lavaan.R | 5 +++++ man/gene.Rd | 2 +- man/kfold.Rd | 4 ++-- 11 files changed, 39 insertions(+), 28 deletions(-)
Title: Model Wrappers for Poisson Regression
Description: Bindings for Poisson regression models for use with the
'parsnip' package. Models include simple generalized linear models,
Bayesian models, and zero-inflated Poisson models (Zeileis, Kleiber,
and Jackman (2008) <doi:10.18637/jss.v027.i08>).
Author: Max Kuhn [aut] ,
Hannah Frick [aut, cre] ,
RStudio [cph, fnd]
Maintainer: Hannah Frick <hannah@rstudio.com>
Diff between poissonreg versions 1.0.0 dated 2022-06-15 and 1.0.1 dated 2022-08-22
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NEWS.md | 4 ++++ R/poisson_reg.R | 6 +++++- R/poissonreg-package.R | 2 +- README.md | 2 +- man/figures |only man/poissonreg-package.Rd | 27 ++++++++++++++++++++------- 8 files changed, 42 insertions(+), 20 deletions(-)
Title: The Matrix-Normal Inverse-Wishart Distribution
Description: Density evaluation and random number generation for the Matrix-Normal Inverse-Wishart (MNIW) distribution, as well as the the Matrix-Normal, Matrix-T, Wishart, and Inverse-Wishart distributions. Core calculations are implemented in a portable (header-only) C++ library, with matrix manipulations using the 'Eigen' library for linear algebra. Also provided is a Gibbs sampler for Bayesian inference on a random-effects model with multivariate normal observations.
Author: Martin Lysy [aut, cre],
Bryan Yates [aut]
Maintainer: Martin Lysy <mlysy@uwaterloo.ca>
Diff between mniw versions 1.0 dated 2019-10-09 and 1.0.1 dated 2022-08-22
DESCRIPTION | 10 ++++---- MD5 | 24 ++++++++++----------- R/RandomEffects.R | 5 ---- build/vignette.rds |binary inst/doc/mniw-distributions.Rmd | 4 +-- inst/doc/mniw-distributions.html | 44 ++++++++++++++++++++++++++++++--------- man/Hospitals.Rd | 6 +++-- man/MNIW.Rd | 5 ---- man/RxNormLM.Rd | 15 +++++++++++-- man/mniw-package.Rd | 5 ---- man/rRxNorm.Rd | 5 ---- src/RcppExports.cpp | 5 ++++ vignettes/mniw-distributions.Rmd | 4 +-- 13 files changed, 77 insertions(+), 55 deletions(-)
Title: Inference for Linear Models with Nuisance Parameters
Description: Efficient Frequentist profiling and Bayesian marginalization of parameters for which the conditional likelihood is that of a multivariate linear regression model. Arbitrary inter-observation error correlations are supported, with optimized calculations provided for independent-heteroskedastic and stationary dependence structures.
Author: Martin Lysy [aut, cre],
Bryan Yates [aut]
Maintainer: Martin Lysy <mlysy@uwaterloo.ca>
Diff between LMN versions 1.1.2 dated 2022-02-28 and 1.1.3 dated 2022-08-22
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++---------- R/lmn_loglik.R | 2 +- R/lmn_marg.R | 2 +- R/lmn_post.R | 2 +- R/lmn_prof.R | 2 +- build/vignette.rds |binary inst/doc/LMN.html | 49 +++++++++++++++++++++++++------------------------ man/LMN-package.Rd | 2 +- man/lmn_post.Rd | 4 ---- man/lmn_prior.Rd | 4 ---- 11 files changed, 46 insertions(+), 53 deletions(-)
More information about VARSELECTEXPOSURE at CRAN
Permanent link
Title: Call R from R
Description: It is sometimes useful to perform a computation in a separate
R process, without affecting the current R process at all. This
packages does exactly that.
Author: Gabor Csardi [aut, cre, cph] ,
Winston Chang [aut],
RStudio [cph, fnd],
Mango Solutions [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between callr versions 3.7.1 dated 2022-07-13 and 3.7.2 dated 2022-08-22
callr-3.7.1/callr/man/figures/unnamed-chunk-2.svg |only callr-3.7.1/callr/man/figures/unnamed-chunk-3.svg |only callr-3.7.2/callr/DESCRIPTION | 12 - callr-3.7.2/callr/MD5 | 75 +++--- callr-3.7.2/callr/NAMESPACE | 1 callr-3.7.2/callr/NEWS.md | 7 callr-3.7.2/callr/R/callr-package.R | 5 callr-3.7.2/callr/R/hook.R | 44 ++++ callr-3.7.2/callr/R/r-session.R | 2 callr-3.7.2/callr/R/setup.R | 6 callr-3.7.2/callr/README.md | 38 ++- callr-3.7.2/callr/inst/WORDLIST | 1 callr-3.7.2/callr/man/add_hook.Rd |only callr-3.7.2/callr/man/callr-package.Rd | 242 ++++++++++++++++++---- callr-3.7.2/callr/man/figures/bg-methods.svg | 2 callr-3.7.2/callr/man/figures/bg.svg | 2 callr-3.7.2/callr/man/figures/error1.svg | 2 callr-3.7.2/callr/man/figures/error2-2.svg | 2 callr-3.7.2/callr/man/figures/io-2.svg |only callr-3.7.2/callr/man/figures/io.svg | 2 callr-3.7.2/callr/man/figures/packages.svg | 2 callr-3.7.2/callr/man/figures/passargsfail.svg | 2 callr-3.7.2/callr/man/figures/passargsok.svg | 2 callr-3.7.2/callr/man/figures/poll-2.svg | 2 callr-3.7.2/callr/man/figures/poll-3.svg | 2 callr-3.7.2/callr/man/figures/poll-4.svg | 2 callr-3.7.2/callr/man/figures/poll.svg | 2 callr-3.7.2/callr/man/figures/rcmd.svg | 2 callr-3.7.2/callr/man/figures/rsession-4.svg | 2 callr-3.7.2/callr/man/figures/rsession-5.svg | 2 callr-3.7.2/callr/man/figures/rsession.svg | 2 callr-3.7.2/callr/man/figures/rsession2-2.svg | 2 callr-3.7.2/callr/man/figures/rsession2.svg | 2 callr-3.7.2/callr/man/figures/simple.svg | 2 callr-3.7.2/callr/man/r_process.Rd | 94 ++++---- callr-3.7.2/callr/man/r_session.Rd | 94 ++++---- callr-3.7.2/callr/man/r_session_options.Rd | 7 callr-3.7.2/callr/man/rcmd_process.Rd | 96 ++++---- callr-3.7.2/callr/man/roxygen |only callr-3.7.2/callr/man/rscript_process.Rd | 96 ++++---- callr-3.7.2/callr/tests/testthat/test-hook.R |only callr-3.7.2/callr/tests/testthat/test-package.R |only 42 files changed, 544 insertions(+), 314 deletions(-)
Title: Colorblind-Friendly Color Maps (Lite Version)
Description: Color maps designed to improve graph readability for readers with
common forms of color blindness and/or color vision deficiency. The color
maps are also perceptually-uniform, both in regular form and also when
converted to black-and-white for printing. This is the 'lite' version of the
'viridis' package that also contains 'ggplot2' bindings for discrete and
continuous color and fill scales and can be found at
<https://cran.r-project.org/package=viridis>.
Author: Simon Garnier [aut, cre],
Noam Ross [ctb, cph],
Bob Rudis [ctb, cph],
Marco Sciaini [ctb, cph],
Antônio Pedro Camargo [ctb, cph],
Cedric Scherer [ctb, cph]
Maintainer: Simon Garnier <garnier@njit.edu>
Diff between viridisLite versions 0.4.0 dated 2021-04-13 and 0.4.1 dated 2022-08-22
DESCRIPTION | 8 +++---- MD5 | 10 ++++---- NEWS.md | 12 ++++++++++ R/viridis.R | 60 ++++++++++++++++++++++++----------------------------- man/viridis.Rd | 25 +++++++++------------- man/viridis.map.Rd | 32 ++++++++++++++-------------- 6 files changed, 76 insertions(+), 71 deletions(-)
More information about truncnormbayes at CRAN
Permanent link
Title: Individual Conditional Expectation Plot Toolbox
Description: Implements Individual Conditional Expectation (ICE) plots, a tool for visualizing the model estimated by any supervised learning algorithm. ICE plots refine Friedman's partial dependence plot by graphing the functional relationship between the predicted response and a covariate of interest for individual observations. Specifically, ICE plots highlight the variation in the fitted values across the range of a covariate of interest, suggesting where and to what extent they may exist.
Author: Alex Goldstein, Adam Kapelner, Justin Bleich
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between ICEbox versions 1.1.2 dated 2017-07-13 and 1.1.5 dated 2022-08-22
CHANGELOG |only DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++--------- R/clusterICE.R | 2 +- R/dice.R | 2 +- R/ice.R | 11 +++++++---- R/plot.dice.R | 6 +++--- R/plot.ice.R | 16 ++++++++++------ man/WhiteWine.Rd | 10 +++++----- man/plot.dice.Rd | 2 +- man/plot.ice.Rd | 2 +- 11 files changed, 43 insertions(+), 35 deletions(-)
More information about handyFunctions at CRAN
Permanent link
Title: Tools for Making and Combining Functions
Description: Provides a suite of function-building tools centered around a
(forward) composition operator, %>>>%, which extends the semantics of the
'magrittr' %>% operator and supports 'Tidyverse' quasiquotation. It enables
you to construct composite functions that can be inspected and transformed as
list-like objects. In conjunction with %>>>%, a compact function constructor,
fn(), and a partial-application constructor, partial(), are also provided;
both support quasiquotation.
Author: Eugene Ha [aut, cre]
Maintainer: Eugene Ha <eha@posteo.de>
Diff between gestalt versions 0.1.9 dated 2022-02-02 and 0.2.0 dated 2022-08-22
DESCRIPTION | 9 - LICENSE | 2 MD5 | 52 ++--- NAMESPACE | 2 NEWS.md | 26 ++ R/compose.R | 90 +++++----- R/partial.R | 313 +++++++++++++---------------------- R/utils.R | 7 build/vignette.rds |binary inst/doc/gestalt.html | 150 ++++++++-------- man/compose.Rd | 175 +++++++++++++------ man/context.Rd | 42 +++- man/fn.Rd | 72 +++++--- man/partial.Rd | 55 +++--- man/posure.Rd | 24 +- tests/testthat/helper.R | 5 tests/testthat/test-closure.R | 2 tests/testthat/test-compose.R | 49 ++++- tests/testthat/test-constant.R | 2 tests/testthat/test-context.R | 4 tests/testthat/test-environments.R | 2 tests/testthat/test-errors.R | 2 tests/testthat/test-functions.R | 2 tests/testthat/test-partial.R | 171 ++++--------------- tests/testthat/test-posure.R | 2 tests/testthat/test-print.R | 72 -------- tests/testthat/test-quasiquotation.R | 2 27 files changed, 645 insertions(+), 689 deletions(-)
Title: Penalized Transformation Models
Description: Partially penalized versions of specific transformation models
implemented in package 'mlt'. Available models include a fully parametric version
of the Cox model, other parametric survival models (Weibull, etc.), models for
binary and ordered categorical variables, normal and transformed-normal (Box-Cox type)
linear models, and continuous outcome logistic regression. Hyperparameter tuning
is facilitated through model-based optimization functionalities from package 'mlrMBO'.
The accompanying vignette describes the methodology used in 'tramnet' in detail.
Transformation models and model-based optimization are described in
Hothorn et al. (2019) <doi:10.1111/sjos.12291> and
Bischl et al. (2016) <arxiv:1703.03373>, respectively.
Author: Lucas Kook [cre, aut],
Balint Tamasi [ctb],
Sandra Siegfried [ctb],
Samuel Pawel [ctb],
Torsten Hothorn [ctb]
Maintainer: Lucas Kook <lucasheinrich.kook@uzh.ch>
Diff between tramnet versions 0.0-6 dated 2021-07-19 and 0.0-7 dated 2022-08-22
DESCRIPTION | 12 ++++++------ MD5 | 21 +++++++++++---------- R/tramnet.R | 4 ++-- build/vignette.rds |binary inst/doc/tramnet.R | 2 +- inst/doc/tramnet.Rnw | 2 +- inst/doc/tramnet.pdf |binary man/mbo_tramnet.Rd | 12 ------------ tests/Colr-pen.R | 4 +++- tests/Colr-pen.Rout.save | 18 +++++++++--------- vignettes/Prostate.rda |only vignettes/tramnet.Rnw | 2 +- 12 files changed, 34 insertions(+), 43 deletions(-)
Title: Tools for Cleaning Up Messy Files
Description: Some tools for cleaning up messy 'Excel' files to be suitable
for R. People who have been working with 'Excel' for years built more
or less complicated sheets with names, characters, formats that are
not homogeneous. To be able to use them in R nowadays, we built a set
of functions that will avoid the majority of importation problems and
keep all the data at best.
Author: Vincent Guyader [aut, cre] ,
Sebastien Rochette [aut] ,
ThinkR [cph]
Maintainer: Vincent Guyader <vincent@thinkr.fr>
Diff between thinkr versions 0.15 dated 2020-07-07 and 0.16 dated 2022-08-22
thinkr-0.15/thinkr/R/excel_names.R |only thinkr-0.15/thinkr/man/excel_col.Rd |only thinkr-0.15/thinkr/man/excel_to_ncol.Rd |only thinkr-0.15/thinkr/man/ncol_to_excel.Rd |only thinkr-0.16/thinkr/DESCRIPTION | 50 +-- thinkr-0.16/thinkr/MD5 | 71 ++-- thinkr-0.16/thinkr/NAMESPACE | 4 thinkr-0.16/thinkr/R/as_numeric.R | 77 ++--- thinkr-0.16/thinkr/R/ca_ressemble_a_un_nombre.R | 30 +- thinkr-0.16/thinkr/R/efface_test.R | 24 - thinkr-0.16/thinkr/R/find_name.R | 30 +- thinkr-0.16/thinkr/R/from_excel_to_posixt.R | 30 +- thinkr-0.16/thinkr/R/is_full_figures.R | 34 +- thinkr-0.16/thinkr/R/is_likert.R | 41 +- thinkr-0.16/thinkr/R/is_misc.R | 60 ++-- thinkr-0.16/thinkr/R/levels_to_vec.R | 28 - thinkr-0.16/thinkr/R/make_unique.R | 40 +- thinkr-0.16/thinkr/R/ncol_to_excel.R |only thinkr-0.16/thinkr/R/notin.R | 28 - thinkr-0.16/thinkr/R/replace_pattern.R | 208 +++++++------- thinkr-0.16/thinkr/R/ublo.R | 108 +++---- thinkr-0.16/thinkr/R/utils-pipe.R | 22 - thinkr-0.16/thinkr/R/xlsx.plusieurs.R | 220 +++++++-------- thinkr-0.16/thinkr/R/zzz.R | 39 ++ thinkr-0.16/thinkr/README.md | 53 ++- thinkr-0.16/thinkr/build |only thinkr-0.16/thinkr/inst/doc |only thinkr-0.16/thinkr/man/as_mon_numeric.Rd | 15 - thinkr-0.16/thinkr/man/excel_names.Rd |only thinkr-0.16/thinkr/man/replace_pattern.Rd | 19 - thinkr-0.16/thinkr/man/thinkr-package.Rd | 9 thinkr-0.16/thinkr/tests/testthat.R | 8 thinkr-0.16/thinkr/tests/testthat/test-as_numeric.R |only thinkr-0.16/thinkr/tests/testthat/test-clean_names.R | 64 ++-- thinkr-0.16/thinkr/tests/testthat/test-find_name.R |only thinkr-0.16/thinkr/tests/testthat/test-is_likert.R |only thinkr-0.16/thinkr/tests/testthat/test-make_unique.R | 22 - thinkr-0.16/thinkr/tests/testthat/test-ncol_to_excel.R |only thinkr-0.16/thinkr/tests/testthat/test-replace_pattern.R |only thinkr-0.16/thinkr/tests/testthat/test-startupmessage.R |only thinkr-0.16/thinkr/vignettes |only 41 files changed, 719 insertions(+), 615 deletions(-)
Title: Big Data Preprocessing Architecture
Description: Provide a tool to easily build customized data flows to pre-process large volumes
of information from different sources. To this end, 'bdpar' allows to (i) easily use and
create new functionalities and (ii) develop new data source extractors according to the
user needs. Additionally, the package provides by default a predefined data flow
to extract and pre-process the most relevant information (tokens, dates, ... ) from some textual
sources (SMS, Email, tweets, YouTube comments).
Author: Miguel Ferreiro-Diaz [aut, cre],
David Ruano-Ordas [aut, ctr],
Tomas R. Cotos-Yanez [aut, ctr],
Jose Ramon Mendez Reboredo [aut, ctr],
University of Vigo [cph]
Maintainer: Miguel Ferreiro-Diaz <miguel.ferreiro.diaz@gmail.com>
Diff between bdpar versions 3.0.2 dated 2022-05-18 and 3.0.3 dated 2022-08-22
DESCRIPTION | 10 +++--- MD5 | 60 ++++++++++++++++++------------------ NEWS.md | 65 +++++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/bdpar.html | 17 +++++++--- inst/doc/bdparExample.html | 17 +++++++--- inst/doc/bdparExampleImage.html | 17 +++++++--- man/AbbreviationPipe.Rd | 14 ++++---- man/ContractionPipe.Rd | 14 ++++---- man/DefaultPipeline.Rd | 6 --- man/DynamicPipeline.Rd | 6 --- man/ExtractorEml.Rd | 42 ++++++++++++------------- man/ExtractorSms.Rd | 42 ++++++++++++------------- man/ExtractorTwtid.Rd | 42 ++++++++++++------------- man/ExtractorYtbid.Rd | 42 ++++++++++++------------- man/File2Pipe.Rd | 14 ++++---- man/FindEmojiPipe.Rd | 14 ++++---- man/FindEmoticonPipe.Rd | 14 ++++---- man/FindHashtagPipe.Rd | 14 ++++---- man/FindUrlPipe.Rd | 14 ++++---- man/FindUserNamePipe.Rd | 14 ++++---- man/GuessDatePipe.Rd | 14 ++++---- man/GuessLanguagePipe.Rd | 14 ++++---- man/InterjectionPipe.Rd | 14 ++++---- man/MeasureLengthPipe.Rd | 14 ++++---- man/SlangPipe.Rd | 14 ++++---- man/StopWordPipe.Rd | 14 ++++---- man/StoreFileExtPipe.Rd | 14 ++++---- man/TargetAssigningPipe.Rd | 14 ++++---- man/TeeCSVPipe.Rd | 14 ++++---- man/ToLowerCasePipe.Rd | 14 ++++---- 31 files changed, 316 insertions(+), 302 deletions(-)
Title: QTL Mapping for Multi Parent Populations
Description: For Multi Parent Populations (MPP) Identity By Descend (IBD)
probabilities are computed using Hidden Markov Models. These probabilities
are then used in a mixed model approach for QTL Mapping as described in
Li et al. (<doi:10.1007/s00122-021-03919-7>).
Author: Wenhao Li [aut] ,
Martin Boer [aut] ,
Bart-Jan van Rossum [aut, cre]
,
Fred van Eeuwijk [ctb]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenMPP versions 1.0.0 dated 2022-03-21 and 1.0.1 dated 2022-08-22
statgenMPP-1.0.0/statgenMPP/R/readRabbit.R |only statgenMPP-1.0.0/statgenMPP/man/readRABBIT.Rd |only statgenMPP-1.0.1/statgenMPP/DESCRIPTION | 14 statgenMPP-1.0.1/statgenMPP/MD5 | 77 statgenMPP-1.0.1/statgenMPP/NAMESPACE | 8 statgenMPP-1.0.1/statgenMPP/NEWS.md | 14 statgenMPP-1.0.1/statgenMPP/R/calcIBDMPP.R | 424 ++--- statgenMPP-1.0.1/statgenMPP/R/createGDataMPP.R | 516 ------ statgenMPP-1.0.1/statgenMPP/R/createGDataMPPInternal.R |only statgenMPP-1.0.1/statgenMPP/R/createQTLMPP.R | 644 ++++---- statgenMPP-1.0.1/statgenMPP/R/kinshipIBD.R |only statgenMPP-1.0.1/statgenMPP/R/randomQTLmodel.R | 88 - statgenMPP-1.0.1/statgenMPP/R/readRabbitMPP.R |only statgenMPP-1.0.1/statgenMPP/R/reexport.R | 57 statgenMPP-1.0.1/statgenMPP/R/scanQTL.R | 207 +- statgenMPP-1.0.1/statgenMPP/R/selQTLMPP.R | 489 +++--- statgenMPP-1.0.1/statgenMPP/R/statgenMPP.R | 13 statgenMPP-1.0.1/statgenMPP/R/utils.R | 162 +- statgenMPP-1.0.1/statgenMPP/README.md | 3 statgenMPP-1.0.1/statgenMPP/build/partial.rdb |binary statgenMPP-1.0.1/statgenMPP/build/vignette.rds |binary statgenMPP-1.0.1/statgenMPP/inst/doc/QTLMapping_in_MultiParentPopulations.R | 32 statgenMPP-1.0.1/statgenMPP/inst/doc/QTLMapping_in_MultiParentPopulations.Rmd | 780 +++++----- statgenMPP-1.0.1/statgenMPP/inst/doc/QTLMapping_in_MultiParentPopulations.html | 558 ++++--- statgenMPP-1.0.1/statgenMPP/inst/extdata/multipop/AxBxCpheno.txt | 2 statgenMPP-1.0.1/statgenMPP/inst/tinytest/ABC_MQM_max |binary statgenMPP-1.0.1/statgenMPP/inst/tinytest/gDataMPP |only statgenMPP-1.0.1/statgenMPP/inst/tinytest/test_createGDataMPP.R | 98 - statgenMPP-1.0.1/statgenMPP/inst/tinytest/test_createQTLmpp.R | 96 - statgenMPP-1.0.1/statgenMPP/inst/tinytest/test_gDataMPP.R |only statgenMPP-1.0.1/statgenMPP/inst/tinytest/test_kinshipIBD.R |only statgenMPP-1.0.1/statgenMPP/inst/tinytest/test_readRABBIT.R | 46 statgenMPP-1.0.1/statgenMPP/inst/tinytest/test_selQTLmpp.R | 130 - statgenMPP-1.0.1/statgenMPP/man/createGDataMPP.Rd |only statgenMPP-1.0.1/statgenMPP/man/kinshipIBD.Rd |only statgenMPP-1.0.1/statgenMPP/man/plot.QTLMPP.Rd | 284 +-- statgenMPP-1.0.1/statgenMPP/man/plot.gDataMPP.Rd | 2 statgenMPP-1.0.1/statgenMPP/man/randomQTLmodel.Rd | 40 statgenMPP-1.0.1/statgenMPP/man/readRABBITMPP.Rd |only statgenMPP-1.0.1/statgenMPP/man/scanQTL.Rd | 45 statgenMPP-1.0.1/statgenMPP/man/selQTLMPP.Rd | 182 +- statgenMPP-1.0.1/statgenMPP/man/statgenMPP-package.Rd | 52 statgenMPP-1.0.1/statgenMPP/man/summary.QTLMPP.Rd | 88 - statgenMPP-1.0.1/statgenMPP/man/summary.gDataMPP.Rd | 2 statgenMPP-1.0.1/statgenMPP/vignettes/QTLMapping_in_MultiParentPopulations.Rmd | 780 +++++----- 45 files changed, 2979 insertions(+), 2954 deletions(-)
Title: Risk Management and Optimization for Portfolio Investment
Description: Provides functions for risk management and portfolio investment of securities with practical tools for data processing and plotting. Moreover, it contains functions which perform the COS Method, an option pricing method based on the Fourier-cosine series (Fang, F. (2008) <doi:10.1137/080718061>).
Author: Wei Ling [aut, cre],
Yang Liu [aut]
Maintainer: Wei Ling <lingwei3418@163.com>
Diff between RMOPI versions 1.0 dated 2022-08-19 and 1.1 dated 2022-08-22
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/cos.R | 2 +- R/ggplot.R | 13 ++++++------- man/gghistplot.Rd | 4 ++-- man/gglineplot.Rd | 6 ++---- 6 files changed, 19 insertions(+), 22 deletions(-)
Title: Vault Client for Secrets and Sensitive Data
Description: Provides an interface to a 'HashiCorp' vault server over
its http API (typically these are self-hosted; see
<https://www.vaultproject.io>). This allows for secure storage and
retrieval of secrets over a network, such as tokens, passwords and
certificates. Authentication with vault is supported through
several backends including user name/password and authentication via
'GitHub'.
Author: Rich FitzJohn [aut, cre],
Robert Ashton [aut],
Wes Hinsley [aut],
Imperial College of Science, Technology and Medicine [cph]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between vaultr versions 1.1.0 dated 2021-06-09 and 1.1.1 dated 2022-08-22
DESCRIPTION | 8 - MD5 | 44 +++++----- build/vignette.rds |binary man/vault_api_client.Rd | 86 ++++++++++---------- man/vault_client.Rd | 80 +++++++++---------- man/vault_client_audit.Rd | 46 +++++------ man/vault_client_auth.Rd | 46 +++++------ man/vault_client_auth_approle.Rd | 98 +++++++++++------------ man/vault_client_auth_github.Rd | 62 +++++++-------- man/vault_client_auth_userpass.Rd | 74 +++++++++--------- man/vault_client_cubbyhole.Rd | 46 +++++------ man/vault_client_kv1.Rd | 56 ++++++------- man/vault_client_kv2.Rd | 104 +++++++++++++------------ man/vault_client_object.Rd | 18 ++-- man/vault_client_operator.Rd | 98 +++++++++++------------ man/vault_client_policy.Rd | 46 +++++------ man/vault_client_secrets.Rd | 46 +++++------ man/vault_client_token.Rd | 156 +++++++++++++++++++------------------- man/vault_client_tools.Rd | 34 ++++---- man/vault_client_transit.Rd | 152 ++++++++++++++++++------------------- man/vault_resolve_secrets.Rd | 12 +- man/vault_test_server.Rd | 62 +++++++-------- man/vaultr.Rd | 6 - 23 files changed, 695 insertions(+), 685 deletions(-)
Title: Item Response Models for Multiple Ratings
Description: Implements some item response models for multiple
ratings, including the hierarchical rater model,
conditional maximum likelihood estimation of linear
logistic partial credit model and a wrapper function
to the commercial FACETS program. See Robitzsch and
Steinfeld (2018) for a description of the functionality
of the package.
See Wang, Su and Qiu (2014; <doi:10.1111/jedm.12045>)
for an overview of modeling alternatives.
Author: Alexander Robitzsch [aut, cre], Jan Steinfeld [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between immer versions 1.3-3 dated 2022-05-17 and 1.4-15 dated 2022-08-22
DESCRIPTION | 8 - MD5 | 46 +++--- R/MHprop_refresh.R | 5 R/RcppExports.R | 2 R/immer_ccml.R | 31 ++-- R/immer_cml.R | 36 ++-- R/immer_cmml.R | 47 +++--- R/immer_cmml_proc_basispar.R | 11 - R/immer_create_design_matrix_formula.R | 31 ++-- R/lpcm_data_prep.R | 12 - README.md | 5 build/partial.rdb |binary inst/NEWS | 14 + man/immer_cml.Rd | 2 man/immer_hrm.Rd | 6 man/immer_jml.Rd | 4 man/immer_latent_regression.Rd | 15 +- man/immer_unique_patterns.Rd | 8 - src/RcppExports.cpp | 2 src/immer_rcpp_ccml.cpp | 69 +++++---- src/immer_rcpp_cml.cpp | 8 - src/immer_rcpp_cmml.cpp | 247 ++++++++++++++++++--------------- src/immer_rcpp_jml.cpp | 19 +- src/immer_rcpp_latent_regression.cpp | 10 - 24 files changed, 368 insertions(+), 270 deletions(-)
Title: Tools for Imaging Flow Cytometry
Description: Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®', part of 'Luminex®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.
Author: Yohann Demont [aut, cre],
Gautier Stoll [ctb],
Guido Kroemer [ldr],
Jean-Pierre Marolleau [ldr],
Loïc Garcon [ldr]
Maintainer: Yohann Demont <git.demont@gmail.com>
Diff between IFC versions 0.1.5 dated 2022-05-24 and 0.1.6 dated 2022-08-22
DESCRIPTION | 8 +-- MD5 | 97 +++++++++++++++++++++++---------------------- NAMESPACE | 1 R/DisplayGallery.R | 8 +-- R/ExportToDAF.R | 37 +++++++++-------- R/ExportToGallery.R | 5 +- R/ExportToNumpy.R | 8 +-- R/ExportToXIF.R | 6 +- R/ExtractFromDAF.R | 3 - R/ExtractFromXIF.R | 4 - R/ExtractImages_toBase64.R | 7 +-- R/ExtractImages_toFile.R | 5 +- R/ExtractImages_toMatrix.R | 7 +-- R/ExtractMasks_toMatrix.R | 7 +-- R/XIFtoTIFF.R | 65 ++++++++++++++++-------------- R/buildBatch.R | 8 +-- R/checksumDAF.R | 2 R/checksumXIF.R | 2 R/data_to_DAF.R | 2 R/fcs.R | 3 - R/getASSIST.R | 2 R/getFullTag.R | 49 ++++++++++++++++------ R/getIFD.R | 1 R/getImagesValues.R | 4 - R/getInfo.R | 6 +- R/getOffsets.R | 2 R/mergeXIF.R | 69 +++++++++++++++++++------------- R/objectExtract.R | 12 ++--- R/popsRename.R |only R/popsWithin.R | 2 R/readGatingStrategy.R | 4 - R/strings_utils.R | 34 ++++++++------- R/subsetXIF.R | 63 ++++++++++++++++------------- R/tiff_utils.R | 28 ++++++++++++ R/whoami.R | 1 R/writeGatingStrategy.R | 2 build/partial.rdb |binary inst/CITATION | 2 inst/include/extract.hpp | 4 - inst/include/gate.hpp | 4 - inst/include/utils.hpp | 3 - man/ExportToXIF.Rd | 3 + man/IFC-package.Rd | 4 - man/XIFtoTIFF.Rd | 3 + man/collapse_raw.Rd |only man/getFullTag.Rd | 4 + man/mergeXIF.Rd | 3 + man/next_bool.Rd | 4 + man/popsRename.Rd |only man/splitn.Rd | 9 +++- man/subsetXIF.Rd | 3 + 51 files changed, 365 insertions(+), 245 deletions(-)
Title: "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et
al.
Description: Methods for Cluster analysis. Much extended the original from
Peter Rousseeuw, Anja Struyf and Mia Hubert,
based on Kaufman and Rousseeuw (1990) "Finding Groups in Data".
Author: Martin Maechler [aut, cre] ,
Peter Rousseeuw [aut] ,
Anja Struyf [aut] ,
Mia Hubert [aut] ,
Kurt Hornik [trl, ctb] ,
<https://orcid.org/0000-0003-4198-9911>),
Matthias Studer [ctb],
Pierre Roudier [ctb],
Juan Gonzalez [ctb],
Kamil Kozlowski [ctb],
Er [...truncated...]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between cluster versions 2.1.3 dated 2022-03-28 and 2.1.4 dated 2022-08-22
DESCRIPTION | 8 +++---- MD5 | 48 ++++++++++++++++++++++---------------------- NAMESPACE | 1 R/0aaa.R | 8 ++++++- R/agnes.q | 6 ++--- R/clara.q | 4 +-- R/clusGap.R | 4 +-- R/daisy.q | 17 +++++++-------- R/medoids.R |only R/pam.q | 23 ++++++++------------- R/plothier.q | 10 ++++----- R/plotpart.q | 10 ++++----- R/silhouette.R | 11 ++++------ build/partial.rdb |binary inst/NEWS.Rd | 26 +++++++++++++++++++++++ man/clusplot.default.Rd | 2 - man/clusplot.partition.Rd | 4 +-- man/daisy.Rd | 36 ++++++++++++++++++++++++--------- man/dissimilarity.object.Rd | 18 +++++++++------- man/ellipsoidhull.Rd | 6 ++--- man/medoids.Rd |only man/plot.mona.Rd | 2 - man/pltree.Rd | 2 - po/R-cluster.pot | 2 - tests/daisy-ex.R | 5 ---- tests/daisy-ex.Rout.save | 13 ++++------- 26 files changed, 154 insertions(+), 112 deletions(-)
Title: Marine Benthic Ecosystem Analysis
Description: Preprocessing tools and biodiversity measures
(species abundance, species richness, population heterogeneity and
sensitivity) for analysing marine benthic data. See Van Loon et al.
(2015) <doi:10.1016/j.seares.2015.05.002> for an application of
these tools.
Author: Dennis Walvoort [aut, cre, cph]
Maintainer: Dennis Walvoort <dennis.Walvoort@wur.nl>
Diff between benthos versions 1.3-6 dated 2019-03-17 and 1.3-8 dated 2022-08-22
DESCRIPTION | 15 MD5 | 75 - NAMESPACE | 142 +-- R/data_oosterschelde.R | 4 R/indicators.R | 50 - R/io.R | 29 R/utils.R | 16 build/vignette.rds |binary inst/NEWS.Rd | 9 inst/doc/benthos.Rmd | 6 inst/doc/benthos.html | 1696 ++++++++++++++++++++++---------------- man/abundance.Rd | 6 man/ambi.Rd | 10 man/as_accepted.Rd | 6 man/hill.Rd | 32 man/hpie.Rd | 6 man/hurlbert.Rd | 6 man/is_binomen.Rd | 8 man/iti.Rd | 10 man/margalef.Rd | 6 man/northsea.Rd | 4 man/oosterschelde.Rd | 8 man/pool.Rd | 4 man/read_ambi.Rd | 4 man/read_beqi2.Rd | 4 man/read_iti.Rd | 4 man/read_ref.Rd | 4 man/read_taxa.Rd | 6 man/read_twn.Rd | 12 man/rygg.Rd | 6 man/shannon.Rd | 8 man/simpson.Rd | 6 man/species_richness.Rd | 6 man/to_worms.Rd | 18 man/total_abundance.Rd | 10 tests/testthat/test-bray_curtis.R |only tests/testthat/test-poole.R | 10 tests/testthat/test-utils.R | 42 vignettes/benthos.Rmd | 6 39 files changed, 1288 insertions(+), 1006 deletions(-)
Title: Quantification of Multivariate Dependence
Description: A multivariate copula-based dependence measure. For more information, see Griessenberger, Junker, Trutschnig (2022), On a multivariate copula-based dependence measure and its estimation, Electronic Journal of Statistics, 16, 2206-2251.
Author: Nicolas Dietrich [aut, cre],
Florian Griessenberger [aut],
Robert R. Junker [aut],
Valentin Petztel [aut],
Wolfgang Trutschnig [aut]
Maintainer: Nicolas Dietrich <nicolaspascal.dietrich@plus.ac.at>
Diff between qmd versions 1.1.1 dated 2022-08-18 and 1.1.2 dated 2022-08-22
DESCRIPTION | 8 ++++---- MD5 | 12 +++++++----- R/RcppExports.R | 12 ++++++------ R/util.R |only man/qmdrank.Rd | 12 +++++++----- man/seq_until_changes.Rd |only src/RcppExports.cpp | 10 +++++----- src/code.cpp | 45 ++++++++++++--------------------------------- 8 files changed, 41 insertions(+), 58 deletions(-)
Title: Estimate Functional and Stochastic Parameters of Linear Models
with Correlated Residuals
Description: Implements the Generalized Method of Wavelet Moments with Exogenous Inputs estimator (GMWMX) presented in Cucci, D. A., Voirol, L., Kermarrec, G., Montillet, J. P., and Guerrier, S. (2022) <arXiv:2206.09668>.
The GMWMX estimator allows to estimate functional and stochastic parameters of linear models with correlated residuals.
The 'gmwmx' package provides functions to estimate, compare and analyze models, utilities to load and work with Global Navigation Satellite System (GNSS) data as well as methods to compare results with the Maximum Likelihood Estimator (MLE) implemented in Hector.
Author: Davide Antonio Cucci [aut],
Lionel Voirol [aut, cre],
Stephane Guerrier [aut],
Jean-Philippe Montillet [ctb],
Gael Kermarrec [ctb]
Maintainer: Lionel Voirol <lionelvoirol@hotmail.com>
Diff between gmwmx versions 1.0.0 dated 2022-08-14 and 1.0.1 dated 2022-08-22
DESCRIPTION | 8 +-- MD5 | 20 +++++---- NEWS.md | 7 ++- README.md | 27 +++++++++++- inst/doc/load_estimate_compare_models.R | 61 +++++++++++++++++++++-------- inst/doc/load_estimate_compare_models.Rmd | 61 ++++++++++++++++++++++++++--- inst/doc/load_estimate_compare_models.html | 32 ++++++++------- inst/doc/simulate_data.html | 4 - inst/extdata/fit_cola_wn_fgn.rda |only inst/extdata/fit_cola_wn_matern.rda |only inst/extdata/fit_cola_wn_plp.rda |only inst/extdata/fit_dobs_wn_plp_gmwmx.rda |only vignettes/load_estimate_compare_models.Rmd | 61 ++++++++++++++++++++++++++--- 13 files changed, 223 insertions(+), 58 deletions(-)
Title: Interpolate Data for Smooth Animations
Description: In order to create smooth animation between states of data,
tweening is necessary. This package provides a range of functions for
creating tweened data that can be used as basis for animation. Furthermore
it adds a number of vectorized interpolaters for common R data
types such as numeric, date and colour.
Author: Thomas Lin Pedersen [aut, cre]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between tweenr versions 2.0.0 dated 2022-08-17 and 2.0.1 dated 2022-08-22
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/interpolate_along.R | 2 +- R/tween_along.R | 6 ++++-- R/tween_at.R | 4 +++- R/tween_components.R | 4 +++- R/tween_state.R | 4 +++- 9 files changed, 30 insertions(+), 17 deletions(-)
Title: Robust Asymptotic Statistics
Description: Base S4-classes and functions for robust asymptotic statistics.
Author: Matthias Kohl [cre, cph, aut],
Peter Ruckdeschel [aut, cph],
Mykhailo Pupashenko [ctb] ,
Gerald Kroisandt [ctb] ,
R Core Team [ctb, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between RobAStBase versions 1.2.1 dated 2019-04-25 and 1.2.2 dated 2022-08-22
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- inst/NEWS | 7 +++++++ man/0RobAStBase-package.Rd | 4 ++-- man/makeIC-methods.Rd | 4 ++-- 5 files changed, 22 insertions(+), 15 deletions(-)
Title: Interface to the iDigBio Data API
Description: An interface to iDigBio's search API that allows downloading
specimen records. Searches are returned as a data.frame. Other
functions such as the metadata end points return lists of information.
iDigBio is a US project focused on digitizing and serving museum
specimen collections on the web. See <https://www.idigbio.org> for
information on iDigBio.
Author: Francois Michonneau [aut, cph],
Matthew Collins [aut],
Scott Chamberlain [ctb],
Kevin Love [ctb],
Hem Nalini Morzaria-Luna [ctb],
Maureen Kelly [ctb, cre]
Maintainer: Maureen Kelly <mokelly2@ufl.edu>
Diff between ridigbio versions 0.3.5 dated 2017-02-16 and 0.3.6 dated 2022-08-22
DESCRIPTION | 50 +-- LICENSE | 4 MD5 | 101 +++---- NAMESPACE | 26 - NEWS.md |only R/base.R | 332 ++++++++++++------------ R/idig_build_attrib.R | 64 ++-- R/idig_count_media.R | 62 ++-- R/idig_count_records.R | 54 +-- R/idig_meta_fields.R | 80 ++--- R/idig_search.R | 407 +++++++++++++++--------------- R/idig_search_media.R | 124 ++++----- R/idig_search_records.R | 307 +++++++++++----------- R/idig_top_media.R | 92 +++--- R/idig_top_records.R | 84 +++--- R/idig_view_media.R | 36 +- R/idig_view_records.R | 36 +- R/ridigbio.R | 72 ++--- R/startup.R | 10 README.md | 63 ++-- man/build_field_lists.Rd | 48 +-- man/idig_GET.Rd | 52 +-- man/idig_POST.Rd | 56 ++-- man/idig_build_attrib.Rd | 60 ++-- man/idig_check.Rd | 48 +-- man/idig_check_error.Rd | 48 +-- man/idig_count_media.Rd | 54 +-- man/idig_count_records.Rd | 52 +-- man/idig_meta_fields.Rd | 54 +-- man/idig_parse.Rd | 46 +-- man/idig_search.Rd | 123 ++++----- man/idig_search_media.Rd | 126 ++++----- man/idig_search_records.Rd | 289 ++++++++++----------- man/idig_top_media.Rd | 71 ++--- man/idig_top_records.Rd | 68 ++--- man/idig_url.Rd | 46 +-- man/idig_validate.Rd | 50 +-- man/idig_version.Rd | 46 +-- man/idig_view_media.Rd | 50 +-- man/idig_view_records.Rd | 50 +-- man/ridigbio.Rd | 103 +++---- tests/testthat/test-base.R | 86 +++--- tests/testthat/test-idig_build_attrib.R | 40 +- tests/testthat/test-idig_count_media.R | 58 ++-- tests/testthat/test-idig_count_records.R | 38 +- tests/testthat/test-idig_meta_fields.R | 108 +++---- tests/testthat/test-idig_search_media.R | 105 +++---- tests/testthat/test-idig_search_records.R | 227 ++++++++-------- tests/testthat/test-idig_top_media.R | 114 ++++---- tests/testthat/test-idig_top_records.R | 110 ++++---- tests/testthat/test-idig_view_media.R | 32 +- tests/testthat/test-idig_view_records.R | 34 +- 52 files changed, 2261 insertions(+), 2235 deletions(-)
Title: Automated Reporting of Results and Statistical Models
Description: The aim of the 'report' package is to bridge the gap between
R’s output and the formatted results contained in your manuscript.
This package converts statistical models and data frames into textual
reports suited for publication, ensuring standardization and quality
in results reporting.
Author: Dominique Makowski [aut, cre] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Brenton M. Wiernik [aut] ,
Rudolf Siegel [ctb] ,
Remi Theriault [ctb]
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between report versions 0.5.1 dated 2022-02-22 and 0.5.5 dated 2022-08-22
report-0.5.1/report/tests/spelling.R |only report-0.5.1/report/tests/testthat/test-format_text.R |only report-0.5.5/report/DESCRIPTION | 49 - report-0.5.5/report/MD5 | 141 +-- report-0.5.5/report/NAMESPACE | 3 report-0.5.5/report/NEWS.md | 28 report-0.5.5/report/R/cite_easystats.R | 427 +++++++--- report-0.5.5/report/R/format_citation.R | 10 report-0.5.5/report/R/format_formula.R | 12 report-0.5.5/report/R/report.MixMod.R | 2 report-0.5.5/report/R/report.R | 27 report-0.5.5/report/R/report.aov.R | 9 report-0.5.5/report/R/report.brmsfit.R | 8 report-0.5.5/report/R/report.character.R | 8 report-0.5.5/report/R/report.compare_performance.R | 139 --- report-0.5.5/report/R/report.data.frame.R | 25 report-0.5.5/report/R/report.default.R | 24 report-0.5.5/report/R/report.factor.R | 6 report-0.5.5/report/R/report.glmmTMB.R | 2 report-0.5.5/report/R/report.htest.R | 15 report-0.5.5/report/R/report.lavaan.R | 19 report-0.5.5/report/R/report.lm.R | 54 - report-0.5.5/report/R/report.lme.R | 2 report-0.5.5/report/R/report.lme4.R | 2 report-0.5.5/report/R/report.numeric.R | 29 report-0.5.5/report/R/report.sessionInfo.R | 7 report-0.5.5/report/R/report.stanreg.R | 13 report-0.5.5/report/R/report.test_performance.R | 123 -- report-0.5.5/report/R/report_info.R | 45 - report-0.5.5/report/R/report_intercept.R | 3 report-0.5.5/report/R/report_parameters.R | 9 report-0.5.5/report/R/report_participants.R | 287 +++++- report-0.5.5/report/R/report_performance.R | 16 report-0.5.5/report/R/report_sample.R | 7 report-0.5.5/report/R/report_table.R | 54 + report-0.5.5/report/R/report_text.R | 9 report-0.5.5/report/R/zzz.R |only report-0.5.5/report/README.md | 257 +++--- report-0.5.5/report/build/vignette.rds |binary report-0.5.5/report/inst/doc/cite_packages.R | 2 report-0.5.5/report/inst/doc/cite_packages.Rmd | 2 report-0.5.5/report/inst/doc/cite_packages.html | 170 ++- report-0.5.5/report/inst/doc/new_models.html | 29 report-0.5.5/report/inst/doc/report.R | 2 report-0.5.5/report/inst/doc/report.Rmd | 2 report-0.5.5/report/inst/doc/report.html | 327 +++++-- report-0.5.5/report/inst/easystats_bib.bib |only report-0.5.5/report/inst/easystats_bib.yaml |only report-0.5.5/report/man/as.report.Rd | 138 +-- report-0.5.5/report/man/cite_easystats.Rd | 65 + report-0.5.5/report/man/report_participants.Rd | 52 + report-0.5.5/report/tests/testthat/_snaps/unix |only report-0.5.5/report/tests/testthat/_snaps/windows/report.aov.md | 25 report-0.5.5/report/tests/testthat/_snaps/windows/report.data.frame.md | 172 ++-- report-0.5.5/report/tests/testthat/_snaps/windows/report.htest-correlation.md | 18 report-0.5.5/report/tests/testthat/_snaps/windows/report.htest-t-test.md | 70 + report-0.5.5/report/tests/testthat/_snaps/windows/report.ivreg.md | 53 + report-0.5.5/report/tests/testthat/_snaps/windows/report.lavaan.md | 29 report-0.5.5/report/tests/testthat/_snaps/windows/report.lm.md | 114 ++ report-0.5.5/report/tests/testthat/_snaps/windows/report.lmer.md | 31 report-0.5.5/report/tests/testthat/_snaps/windows/report.stanreg.md | 52 + report-0.5.5/report/tests/testthat/_snaps/windows/report.survreg.md | 38 report-0.5.5/report/tests/testthat/test-report.aov.R | 3 report-0.5.5/report/tests/testthat/test-report.bayesfactor_models.R | 11 report-0.5.5/report/tests/testthat/test-report.data.frame.R | 81 + report-0.5.5/report/tests/testthat/test-report.lm.R | 3 report-0.5.5/report/tests/testthat/test-report.survreg.R | 1 report-0.5.5/report/tests/testthat/test-report_participants.R | 46 - report-0.5.5/report/vignettes/cite_packages.Rmd | 2 report-0.5.5/report/vignettes/report.Rmd | 2 70 files changed, 2184 insertions(+), 1227 deletions(-)
Title: Read, Manipulate, and Write Profiler Data
Description: Defines a data structure for profiler data, and methods to read and
write from the 'Rprof' and 'pprof' file formats.
Author: Kirill Mueller [aut, cre] ,
R Consortium [fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between profile versions 1.0.2 dated 2020-05-11 and 1.0.3 dated 2022-08-22
DESCRIPTION | 25 ++++++++--------- MD5 | 10 +++---- NEWS.md | 13 +++++++++ R/rprof-to-ds.R | 6 ++-- README.md | 69 ++++++++++++++++++++++++++----------------------- man/profile-package.Rd | 4 +- 6 files changed, 72 insertions(+), 55 deletions(-)
Title: Change-Point Detection by Sample-Splitting Methods
Description: Implements multiple change searching algorithms for a variety of
frequently considered parametric change-point models. In particular, it
integrates a criterion proposed by Zou, Wang and Li (2020)
<doi:10.1214/19-AOS1814> to select the number of change-points in a
data-driven fashion. Moreover, it also provides interfaces for
user-customized change-point models with one's own cost function and
parameter estimation routine. It is easy to get started with the
cpss.* set of functions by accessing their documentation pages
(e.g., ?cpss).
Author: Guanghui Wang [aut, cre],
Changliang Zou [aut]
Maintainer: Guanghui Wang <ghwang.nk@gmail.com>
Diff between cpss versions 0.0.2 dated 2020-11-23 and 0.0.3 dated 2022-08-22
cpss-0.0.2/cpss/man/tool1.Rd |only cpss-0.0.2/cpss/man/tool2.Rd |only cpss-0.0.2/cpss/man/tool3.Rd |only cpss-0.0.2/cpss/man/tool4.Rd |only cpss-0.0.3/cpss/DESCRIPTION | 21 + cpss-0.0.3/cpss/MD5 | 68 +++--- cpss-0.0.3/cpss/NAMESPACE | 8 cpss-0.0.3/cpss/NEWS.md | 8 cpss-0.0.3/cpss/R/class.R | 319 +++++++++++++++++------------ cpss-0.0.3/cpss/R/cpss.R |only cpss-0.0.3/cpss/R/custom.R | 154 ++++++-------- cpss-0.0.3/cpss/R/data.R |only cpss-0.0.3/cpss/R/em.R | 29 +- cpss-0.0.3/cpss/R/glm.R | 50 ++-- cpss-0.0.3/cpss/R/meanvar.R | 73 +++--- cpss-0.0.3/cpss/R/utils.R | 2 cpss-0.0.3/cpss/README.md | 45 +++- cpss-0.0.3/cpss/build |only cpss-0.0.3/cpss/data |only cpss-0.0.3/cpss/man/SC.Rd |only cpss-0.0.3/cpss/man/SC_vals.Rd |only cpss-0.0.3/cpss/man/S_vals.Rd |only cpss-0.0.3/cpss/man/algo.Rd |only cpss-0.0.3/cpss/man/algo_param_dim.Rd |only cpss-0.0.3/cpss/man/coef-cpss-method.Rd | 4 cpss-0.0.3/cpss/man/cps.Rd |only cpss-0.0.3/cpss/man/cpss-class.Rd | 6 cpss-0.0.3/cpss/man/cpss.Rd |only cpss-0.0.3/cpss/man/cpss.custom.Rd | 102 +++------ cpss-0.0.3/cpss/man/cpss.em.Rd | 27 +- cpss-0.0.3/cpss/man/cpss.glm.Rd | 25 +- cpss-0.0.3/cpss/man/cpss.lm.Rd | 25 +- cpss-0.0.3/cpss/man/cpss.mean.Rd | 30 +- cpss-0.0.3/cpss/man/cpss.meanvar.Rd | 19 - cpss-0.0.3/cpss/man/cpss.var.Rd | 23 +- cpss-0.0.3/cpss/man/dat.Rd |only cpss-0.0.3/cpss/man/mdl.Rd |only cpss-0.0.3/cpss/man/ncps.Rd |only cpss-0.0.3/cpss/man/params.Rd |only cpss-0.0.3/cpss/man/pelt_pen.Rd |only cpss-0.0.3/cpss/man/plot-cpss-method.Rd | 6 cpss-0.0.3/cpss/man/summary-cpss-method.Rd | 4 cpss-0.0.3/cpss/man/update-cpss-method.Rd | 6 cpss-0.0.3/cpss/man/update_inputs.Rd |only cpss-0.0.3/cpss/man/well.Rd |only cpss-0.0.3/cpss/src/RcppExports.cpp | 5 46 files changed, 586 insertions(+), 473 deletions(-)
Title: Automated Retrieval of ACLED Conflict Event Data
Description: Access and manage the application programming interface (API) of the Armed Conflict Location & Event Data Project (ACLED) at <https://acleddata.com/>. The package makes it easy to retrieve a user-defined sample (or all of the available data) of ACLED, enabling a seamless integration of regular data updates into the research work flow. It requires a minimal number of dependencies. See the package's README file for a note on replicability when drawing on ACLED data. When using this package, you acknowledge that you have read ACLED's terms and conditions of use, and that you agree with their attribution requirements.
Author: Christoph Dworschak [aut, cre]
,
Rob Williams [ctb]
Maintainer: Christoph Dworschak <dworschak@posteo.de>
Diff between acled.api versions 1.1.5 dated 2021-11-12 and 1.1.6 dated 2022-08-22
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ R/acled.api.R | 6 +++--- R/acled.api.internal.R | 2 +- R/supp.fun.R | 8 ++++---- README.md | 24 ++++-------------------- man/acled.api.Rd | 6 +++--- man/get.api.regions.Rd | 2 +- 9 files changed, 34 insertions(+), 45 deletions(-)
Title: Wavelet System Prediction
Description: The wavelet-based variance transformation method is used for system modelling and prediction. It refines predictor spectral representation using Wavelet Theory, which leads to improved model specifications and prediction accuracy. Details of methodologies used in the package can be found in Jiang, Z., Sharma, A., & Johnson, F. (2020) <doi:10.1029/2019WR026962>, Jiang, Z., Rashid, M. M., Johnson, F., & Sharma, A. (2020) <doi:10.1016/j.envsoft.2020.104907>, and Jiang, Z., Sharma, A., & Johnson, F. (2021) <doi:10.1016/J.JHYDROL.2021.126816>.
Author: Ze Jiang [aut, cre] ,
Md. Mamunur Rashid [aut] ,
Ashish Sharma [aut] ,
Fiona Johnson [aut]
Maintainer: Ze Jiang <ze.jiang@unsw.edu.au>
Diff between WASP versions 1.4.2 dated 2022-02-21 and 1.4.3 dated 2022-08-22
DESCRIPTION | 12 - MD5 | 18 +- NEWS.md | 4 build/vignette.rds |binary inst/doc/WASP.R | 2 inst/doc/WASP.Rmd | 2 inst/doc/WASP.html | 477 +++++++++++++++++++++++++++++++++++++++++++++++++---- man/data.SW1.Rd | 28 +-- man/data.SW3.Rd | 28 +-- vignettes/WASP.Rmd | 2 10 files changed, 501 insertions(+), 72 deletions(-)
Title: The Uniform Manifold Approximation and Projection (UMAP) Method
for Dimensionality Reduction
Description: An implementation of the Uniform Manifold Approximation and
Projection dimensionality reduction by McInnes et al. (2018)
<arXiv:1802.03426>. It also provides means to transform new data and to
carry out supervised dimensionality reduction. An implementation of the
related LargeVis method of Tang et al. (2016) <arXiv:1602.00370> is also
provided. This is a complete re-implementation in R (and C++, via the 'Rcpp'
package): no Python installation is required. See the uwot website
(<https://github.com/jlmelville/uwot>) for more documentation and examples.
Author: James Melville [aut, cre],
Aaron Lun [ctb],
Mohamed Nadhir Djekidel [ctb],
Yuhan Hao [ctb]
Maintainer: James Melville <jlmelville@gmail.com>
Diff between uwot versions 0.1.13 dated 2022-08-16 and 0.1.14 dated 2022-08-22
DESCRIPTION | 6 MD5 | 34 +- NAMESPACE | 1 NEWS.md | 25 + R/RcppExports.R | 78 +++--- R/transform.R | 97 ++++--- R/uwot.R | 417 ++++++++++++++++++++++++++++++++- build/partial.rdb |binary man/similarity_graph.Rd |only man/umap_transform.Rd | 20 - man/unload_uwot.Rd | 124 ++++----- tests/testthat/test_curve.R | 24 - tests/testthat/test_mixed_distances.R | 208 ++++++++-------- tests/testthat/test_output.R | 69 +++-- tests/testthat/test_pca.R | 116 ++++----- tests/testthat/test_rand_init.R | 22 - tests/testthat/test_scale.R | 58 ++-- tests/testthat/test_similarity_graph.R |only tests/testthat/test_supervised.R | 256 ++++++++++---------- 19 files changed, 1018 insertions(+), 537 deletions(-)
Title: A Tidy API for Graph Manipulation
Description: A graph, while not "tidy" in itself, can be thought of as two tidy
data frames describing node and edge data respectively. 'tidygraph'
provides an approach to manipulate these two virtual data frames using the
API defined in the 'dplyr' package, as well as provides tidy interfaces to
a lot of common graph algorithms.
Author: Thomas Lin Pedersen [cre, aut]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between tidygraph versions 1.2.1 dated 2022-04-05 and 1.2.2 dated 2022-08-22
DESCRIPTION | 8 ++--- MD5 | 62 ++++++++++++++++++++++----------------------- NEWS.md | 6 ++++ R/activate.R | 6 ++-- R/local.R | 5 ++- R/map.R | 4 +- R/morphers.R | 4 +- R/search.R | 18 ++++++------- README.md | 29 ++++++++++----------- man/centrality.Rd | 64 +++++++++++++++++++++++------------------------ man/component_games.Rd | 10 +++---- man/context_accessors.Rd | 8 ++--- man/create_graphs.Rd | 28 ++++++++++---------- man/edge_types.Rd | 16 +++++------ man/evolution_games.Rd | 12 ++++---- man/fortify.tbl_graph.Rd | 2 - man/graph_measures.Rd | 42 +++++++++++++++--------------- man/graph_types.Rd | 24 ++++++++--------- man/group_graph.Rd | 24 ++++++++--------- man/local_graph.Rd | 23 +++++++--------- man/morphers.Rd | 38 +++++++++++++-------------- man/mutate_as_tbl.Rd | 6 ++-- man/node_measures.Rd | 20 +++++++------- man/node_rank.Rd | 30 +++++++++++----------- man/node_topology.Rd | 6 ++-- man/node_types.Rd | 24 ++++++++--------- man/pair_measures.Rd | 24 ++++++++--------- man/sampling_games.Rd | 14 +++++----- man/search_graph.Rd | 20 +++++++------- man/tbl_graph.Rd | 32 +++++++++++------------ man/tidygraph-package.Rd | 2 - man/type_games.Rd | 12 ++++---- 32 files changed, 315 insertions(+), 308 deletions(-)
Title: Time Series Models for Disease Surveillance
Description: Fits time series models for routine disease surveillance tasks and returns probability distributions for a variety of quantities of interest, including age-standardized rates, period and cumulative percent change, and measures of health inequality. Calculates Theil's index to measure inequality among multiple groups, and can be extended to measure inequality across multiple groups nested within geographies. Inference is completed using Markov chain Monte Carlo via the Stan modeling language. The models are appropriate for count data such as disease incidence and mortality data, employing a Poisson or binomial likelihood and the first-difference (random-walk) prior for unknown risk. Optionally add a covariance matrix for multiple, correlated time series models. References: Donegan, Hughes, and Lee (2022) <doi:10.2196/34589>; Stan Development Team (2021) <https://mc-stan.org>; Theil (1972, ISBN:0-444-10378-3).
Author: Connor Donegan [aut, cre]
Maintainer: Connor Donegan <connor.donegan@gmail.com>
Diff between surveil versions 0.2.0 dated 2022-04-03 and 0.2.1 dated 2022-08-22
surveil-0.2.0/surveil/inst/doc/demonstration.R |only surveil-0.2.0/surveil/inst/doc/demonstration.Rmd |only surveil-0.2.0/surveil/inst/doc/demonstration.html |only surveil-0.2.0/surveil/vignettes/demonstration.Rmd |only surveil-0.2.1/surveil/DESCRIPTION | 8 surveil-0.2.1/surveil/MD5 | 39 - surveil-0.2.1/surveil/NEWS.md | 4 surveil-0.2.1/surveil/R/stan_rw.R | 6 surveil-0.2.1/surveil/R/surveil-package.R | 6 surveil-0.2.1/surveil/build/partial.rdb |only surveil-0.2.1/surveil/build/vignette.rds |binary surveil-0.2.1/surveil/inst/CITATION | 10 surveil-0.2.1/surveil/inst/doc/age-standardization.R | 28 - surveil-0.2.1/surveil/inst/doc/age-standardization.Rmd | 76 -- surveil-0.2.1/surveil/inst/doc/age-standardization.html | 423 +++++++--------- surveil-0.2.1/surveil/inst/doc/surveil-demo.R |only surveil-0.2.1/surveil/inst/doc/surveil-demo.Rmd |only surveil-0.2.1/surveil/inst/doc/surveil-demo.html |only surveil-0.2.1/surveil/inst/doc/surveil-mcmc.R |only surveil-0.2.1/surveil/inst/doc/surveil-mcmc.Rmd |only surveil-0.2.1/surveil/inst/doc/surveil-mcmc.html |only surveil-0.2.1/surveil/man/stan_rw.Rd | 4 surveil-0.2.1/surveil/man/surveil-package.Rd | 6 surveil-0.2.1/surveil/vignettes/age-standardization.Rmd | 76 -- surveil-0.2.1/surveil/vignettes/bib.bib | 39 + surveil-0.2.1/surveil/vignettes/surveil-demo.Rmd |only surveil-0.2.1/surveil/vignettes/surveil-mcmc.Rmd |only 27 files changed, 331 insertions(+), 394 deletions(-)
Title: Automatic Calculation of Effects for Piecewise Structural
Equation Models
Description: Automatically calculate direct, indirect, and total effects for
piecewise structural equation models, comprising lists of fitted models
representing structured equations (Lefcheck, 2016 <doi:10/f8s8rb>).
Confidence intervals are provided via bootstrapping.
Author: Mark V. Murphy [aut, cre]
Maintainer: Mark V. Murphy <murphymv@gmail.com>
Diff between semEff versions 0.6.0 dated 2021-10-12 and 0.6.1 dated 2022-08-22
DESCRIPTION | 18 MD5 | 95 +- NEWS.md | 34 R/bootEff-fun.R | 60 - R/data.R | 10 R/semEff-fun.R | 54 - R/stdEff-fun.R | 186 ++-- README.md | 14 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 10 inst/doc/predicting-effects.Rmd | 8 inst/doc/predicting-effects.html | 290 ++++++- inst/doc/semEff.Rmd | 20 inst/doc/semEff.html | 1547 ++++++++++++++++++++++++++++++++++++++- man/Object.Type.Rd | 116 +- man/Param.Type.Rd | 94 +- man/R2.Rd | 481 ++++++------ man/RVIF.Rd | 52 - man/VIF.Rd | 118 +- man/avgEst.Rd | 174 ++-- man/bootCI.Rd | 178 ++-- man/bootEff.Rd | 343 ++++---- man/getData.Rd | 104 +- man/getEff.Rd | 124 +-- man/getX.Rd | 174 ++-- man/getY.Rd | 94 +- man/glt.Rd | 284 +++---- man/pSapply.Rd | 122 +-- man/predEff.Rd | 404 +++++----- man/print.bootCI.Rd | 42 - man/print.semEff.Rd | 68 - man/rMapply.Rd | 90 +- man/sdW.Rd | 48 - man/semEff-package.Rd | 48 - man/semEff.Rd | 306 +++---- man/shipley.Rd | 2 man/shipley.growth.Rd | 2 man/shipley.sem.Rd | 2 man/shipley.sem.boot.Rd | 2 man/shipley.sem.eff.Rd | 2 man/stdEff.Rd | 435 +++++----- man/summary.semEff.Rd | 58 - man/varW.Rd | 90 +- man/xNam.Rd | 104 +- vignettes/apa.csl |only vignettes/predicting-effects.Rmd | 8 vignettes/references.bib | 126 +-- vignettes/semEff.Rmd | 20 49 files changed, 4209 insertions(+), 2452 deletions(-)
Title: Specify (Pre)Registrations and Export Them Human- And
Machine-Readably
Description: Preregistrations, or more generally, registrations, enable
explicit timestamped and (often but not necessarily publicly) frozen
documentation of plans and expectations as well as decisions and
justifications. In research, preregistrations are commonly used to
clearly document plans and facilitate justifications of deviations from
those plans, as well as decreasing the effects of publication bias by
enabling identification of research that was conducted but not published.
Like reporting guidelines, (pre)registration forms often have specific
structures that facilitate systematic reporting of important items. The
'preregr' package facilitates specifying (pre)registrations in R and
exporting them to a human-readable format (using R Markdown partials or
exporting to an 'HTML' file) as well as human-readable embedded data
(using 'JSON'), as well as importing such exported (pre)registration
specifications from such embedded 'JSON'.
Author: Gjalt-Jorn Peters [aut, cre] ,
Szilvia Zoergő [ctb] ,
Olmo den Akker [ctb] ,
Aleksandra Lazić [ctb]
Maintainer: Gjalt-Jorn Peters <gjalt-jorn@behaviorchange.eu>
Diff between preregr versions 0.2.1 dated 2022-01-25 and 0.2.5 dated 2022-08-22
DESCRIPTION | 27 MD5 | 121 +- R/form_to_rmd_template.R | 2 R/forms_that_are_included.R | 41 README.md | 21 build/partial.rdb |binary build/vignette.rds |binary data/form_OSFqual1_v1.rda |only data/form_preregQE_v0_93.rda |binary data/form_preregQE_v0_94.rda |binary data/form_prpQuant_v1.rda |binary inst/doc/creating_form_from_spreadsheet.Rmd | 2 inst/doc/creating_form_from_spreadsheet.html | 352 +++++++ inst/doc/creating_prereg_form.html | 742 +++++++++++++--- inst/doc/form_OSFprereg_v1.html | 632 ++++++++++++- inst/doc/form_OSFqual1_v1.R |only inst/doc/form_OSFqual1_v1.Rmd |only inst/doc/form_OSFqual1_v1.html |only inst/doc/form_generalPurpose_v1.html | 362 +++++++- inst/doc/form_generalPurpose_v1_1.html | 447 ++++++++- inst/doc/form_inclSysRev_v0_92.html | 672 ++++++++++++-- inst/doc/form_prereg2D_v1.html | 1130 ++++++++++++++++++++++--- inst/doc/form_preregQE_v0_93.html | 471 ++++++++-- inst/doc/form_preregQE_v0_94.html | 510 +++++++++-- inst/doc/form_prpQuant_v1.html | 471 +++++++++- inst/doc/importing_form_from_url.html | 280 +++++- inst/doc/importing_pregistration_from_url.html | 238 ++++- inst/doc/preregr_intro.html | 301 ++++++ inst/doc/rmd_template_from_form.html | 265 +++++ inst/doc/specifying_prereg_content.html | 476 +++++++--- inst/extdata/preregr-form_OSFqual1_v1.xlsx |only inst/extdata/preregr-form_preregQE_v0_93.xlsx |binary inst/extdata/preregr-form_preregQE_v0_94.xlsx |binary inst/extdata/preregr-form_prpQuant_v1.xlsx |binary man/examplePrereg_1.Rd | 36 man/export_to_yaml_or_json.Rd | 118 +- man/form_OSFprereg_v1.Rd | 68 - man/form_OSFqual1_v1.Rd |only man/form_add.Rd | 226 ++--- man/form_almostEmptyForm.Rd | 38 man/form_create.Rd | 124 +- man/form_fromSpreadsheet.Rd | 94 +- man/form_generalPurpose_v1_1.Rd | 56 - man/form_prereg2D_v1.Rd | 34 man/form_preregQE_v0_94.Rd | 54 - man/form_show.Rd | 66 - man/form_to_html.Rd | 86 - man/forms.Rd | 34 man/import_from_html.Rd | 104 +- man/import_yaml_or_json.Rd | 66 - man/prereg_initialize.Rd | 70 - man/prereg_justify.Rd | 136 +-- man/prereg_knit_item_content.Rd | 70 - man/prereg_next_item.Rd | 100 +- man/prereg_show_item_completion.Rd | 66 - man/prereg_show_item_content.Rd | 64 - man/prereg_spec_to_html.Rd | 88 - man/prereg_spec_to_pdf.Rd | 104 +- man/prereg_specify.Rd | 106 +- man/preregr-package.Rd | 57 - man/read_spreadsheet.Rd | 130 +- man/rmd_templates.Rd | 178 +-- man/validate_value.Rd | 174 +-- vignettes/creating_form_from_spreadsheet.Rmd | 2 vignettes/form_OSFqual1_v1.Rmd |only 65 files changed, 7836 insertions(+), 2276 deletions(-)
Title: Wrangle, Analyze, and Visualize Animal Movement Data
Description: Tools to import, clean, and visualize movement data,
particularly from motion capture systems such as Optitrack's
'Motive', the Straw Lab's 'Flydra', or from other sources. We provide
functions to remove artifacts, standardize tunnel position and tunnel
axes, select a region of interest, isolate specific trajectories, fill
gaps in trajectory data, and calculate 3D and per-axis velocity. For
experiments of visual guidance, we also provide functions that use
subject position to estimate perception of visual stimuli.
Author: Vikram B. Baliga [aut, cre] ,
Melissa S. Armstrong [aut] ,
Eric R. Press [aut] ,
Anne-Sophie Bonnet-Lebrun [rev],
Marco Sciaini [rev]
Maintainer: Vikram B. Baliga <vbaliga87@gmail.com>
Diff between pathviewr versions 1.0.1 dated 2021-05-06 and 1.1.3 dated 2022-08-22
DESCRIPTION | 10 MD5 | 97 NAMESPACE | 5 NEWS.md | 22 R/analytical_functions.R | 2255 +++++---- R/data_import_functions.R | 15 R/plotting_functions.R | 12 R/utility_functions.R | 5915 +++++++++++++------------- R/utils-pipe.R | 24 README.md | 660 +- build/vignette.rds |binary inst/doc/data-import-cleaning.html | 534 ++ inst/doc/managing-frame-gaps.R | 2 inst/doc/managing-frame-gaps.Rmd | 414 - inst/doc/managing-frame-gaps.html | 294 + inst/doc/visual-perception-functions.Rmd | 2 inst/doc/visual-perception-functions.html | 361 + man/calc_min_dist_v.Rd | 13 man/clean_by_span.Rd |only man/deg_2_rad.Rd | 1 man/figures/README-all_in_one-1.png |binary man/figures/README-motive_V_sf_pos-1.png |binary man/figures/logo.png |binary man/find_curve_elbow.Rd | 4 man/get_2d_angle.Rd | 7 man/get_3d_angle.Rd | 7 man/get_3d_cross_prod.Rd | 1 man/get_dist_point_line.Rd | 1 man/get_traj_velocities.Rd |only man/get_velocity.Rd | 1 man/insert_treatments.Rd | 7 man/pathviewr-package.Rd | 11 man/rad_2_deg.Rd | 1 man/remove_duplicate_frames.Rd |only man/remove_vel_anomalies.Rd |only man/set_traj_frametime.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test-angular_functions.R | 81 tests/testthat/test-calc_min_dist_box.R | 161 tests/testthat/test-calc_min_dist_v.R | 162 tests/testthat/test-exclude_by_velocity.R | 85 tests/testthat/test-flydra_data_import.R | 6 tests/testthat/test-get_header.R | 34 tests/testthat/test-get_sf.R | 279 - tests/testthat/test-get_vis_angle.R | 284 - tests/testthat/test-insert_treatments.R | 2 tests/testthat/test-plot_viewr_trajectories.R | 438 - tests/testthat/test-relabel_viewr_axes.R | 40 tests/testthat/test-section_tunnel_by.R | 2 tests/testthat/test-visualize_frame_gap.R | 154 vignettes/managing-frame-gaps.Rmd | 414 - vignettes/visual-perception-functions.Rmd | 2 52 files changed, 7128 insertions(+), 5692 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.9.0 dated 2022-08-06 and 0.9.1 dated 2022-08-22
DESCRIPTION | 10 +- MD5 | 22 +++--- R/Internal_Functions.R | 19 +++-- R/Regression.R | 10 +- R/gvload.R | 2 README.md | 6 - build/partial.rdb |binary inst/doc/NNSvignette_Classification.html | 68 ++++++++----------- inst/doc/NNSvignette_Clustering_and_Regression.html | 38 +++++----- inst/doc/NNSvignette_Correlation_and_Dependence.html | 14 +-- inst/doc/NNSvignette_Partial_Moments.html | 2 tests/testthat/test_Partition_Map.R | 30 ++++---- 12 files changed, 111 insertions(+), 110 deletions(-)
Title: Tools to Process the Munich ChronoType Questionnaire (MCTQ)
Description: A complete toolkit to process the Munich ChronoType
Questionnaire (MCTQ) for its three versions (standard, micro, and shift).
MCTQ is a quantitative and validated tool to assess chronotypes using
peoples' sleep behavior, originally presented by Till Roenneberg, Anna
Wirz-Justice, and Martha Merrow (2003, <doi:10.1177/0748730402239679>).
Author: Daniel Vartanian [aut, cre, ccp, cph]
,
Ana Amelia Benedito-Silva [aut, sad]
,
Mario Pedrazzoli [aut, sad] ,
Jonathan Keane [rev] ,
Mario Andre Leocadio-Miguel [rev]
,
Interdisciplinary Sleep Research Group [fnd],
University of Sao Paulo [fnd]
Maintainer: Daniel Vartanian <danvartan@gmail.com>
Diff between mctq versions 0.2.0 dated 2022-05-09 and 0.3.0 dated 2022-08-22
DESCRIPTION | 18 +++--- MD5 | 106 ++++++++++++++++++------------------- NAMESPACE | 1 NEWS.md | 12 +++- R/fd.R | 7 +- R/gu.R | 23 ++++---- R/le_week.R | 8 +- R/micro_mctq.R | 2 R/msl.R | 104 ++++++++++++++++++++++++------------ R/pretty_mctq.R | 2 R/qplot_walk.R | 7 +- R/random_mctq.R | 6 +- R/sdu.R | 83 ++++++++++++++-------------- R/sjl.R | 71 +++++++++++------------- R/sloss_week.R | 10 +-- R/so.R | 32 +++++------ R/std_mctq.R | 2 R/tbt.R | 27 ++++----- README.md | 23 ++++---- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 - inst/WORDLIST | 4 + inst/doc/mctq.html | 71 +++++++++++++----------- inst/doc/time-span-objects.html | 13 +++- inst/extdata/shift_mctq.csv | 2 inst/extdata/std_mctq.csv | 2 man/assign_date.Rd | 6 +- man/cycle_time.Rd | 30 ++++++---- man/fd.Rd | 7 +- man/gu.Rd | 23 ++++---- man/le_week.Rd | 8 +- man/mctq-package.Rd | 6 +- man/micro_mctq.Rd | 2 man/msf_sc.Rd | 92 ++++++++++++++++++++++---------- man/msl.Rd | 13 ++-- man/napd.Rd | 18 +++--- man/qplot_walk.Rd | 19 +++--- man/sd24.Rd | 11 ++- man/sd_overall.Rd | 23 +++----- man/sd_week.Rd | 8 +- man/sdu.Rd | 23 +++----- man/shorter_interval.Rd | 6 +- man/sjl.Rd | 30 ++++------ man/sjl_sc.Rd | 28 +++++---- man/sjl_weighted.Rd | 13 ++-- man/sloss_week.Rd | 10 +-- man/so.Rd | 31 +++++----- man/std_mctq.Rd | 2 man/sum_time.Rd | 30 ++++++---- man/tbt.Rd | 26 ++++----- tests/testthat/Rplots.pdf |binary tests/testthat/test-msf_sc.R | 4 - tests/testthat/test-utils-checks.R | 10 +++ 54 files changed, 629 insertions(+), 490 deletions(-)
Title: Pixel Filters for 'ggplot2' and 'grid'
Description: Provides a range of filters that can be applied to layers from the
'ggplot2' package and its extensions, along with other graphic elements such
as guides and theme elements. The filters are applied at render time and
thus uses the exact pixel dimensions needed.
Author: Thomas Lin Pedersen [aut, cre]
,
RStudio [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between ggfx versions 1.0.0 dated 2021-03-31 and 1.0.1 dated 2022-08-22
DESCRIPTION | 8 MD5 | 21 + NEWS.md |only README.md | 10 build/vignette.rds |binary inst/doc/custom_filters.html | 429 ++++++++++++++++++++++----------------- inst/doc/geoms.html | 209 ++++++++++--------- inst/doc/ggfx.html | 264 ++++++++++++++---------- man/figures/README-example-1.png |binary man/ggfx-package.Rd | 7 man/object_support.Rd | 28 +- man/with_kernel.Rd | 2 12 files changed, 568 insertions(+), 410 deletions(-)
Title: Domain Specific MetaData Scheme
Description: Forms the core for developing own domain specific metadata schemes.
It contains the basic functionality needed for all metadata schemes based on the
'dmdScheme'. See R.M. Krug and O.L. Petchey (2019) <DOI:10.5281/zenodo.3581970>.
Author: Rainer M. Krug [aut, cre] ,
Owen L. Petchey [ctb]
Maintainer: Rainer M. Krug <Rainer.Krug@uzh.ch>
Diff between dmdScheme versions 1.3.2 dated 2022-04-12 and 1.3.5 dated 2022-08-22
dmdScheme-1.3.2/dmdScheme/man/reexports.Rd |only dmdScheme-1.3.5/dmdScheme/DESCRIPTION | 16 dmdScheme-1.3.5/dmdScheme/MD5 | 29 - dmdScheme-1.3.5/dmdScheme/NAMESPACE | 4 dmdScheme-1.3.5/dmdScheme/R/as_dmdScheme.xml_document.R | 2 dmdScheme-1.3.5/dmdScheme/R/imports_eml.R | 12 dmdScheme-1.3.5/dmdScheme/R/make_index.R | 2 dmdScheme-1.3.5/dmdScheme/build/vignette.rds |binary dmdScheme-1.3.5/dmdScheme/inst/doc/Develop_and_Use_the_dmdScheme.R | 2 dmdScheme-1.3.5/dmdScheme/inst/doc/Develop_and_Use_the_dmdScheme.Rmd | 2 dmdScheme-1.3.5/dmdScheme/inst/doc/Develop_and_Use_the_dmdScheme.html | 223 +++++----- dmdScheme-1.3.5/dmdScheme/man/as_dmdScheme.Rd | 5 dmdScheme-1.3.5/dmdScheme/man/make_index.Rd | 2 dmdScheme-1.3.5/dmdScheme/man/report.Rd | 6 dmdScheme-1.3.5/dmdScheme/man/validate.Rd | 6 dmdScheme-1.3.5/dmdScheme/vignettes/Develop_and_Use_the_dmdScheme.Rmd | 2 16 files changed, 157 insertions(+), 156 deletions(-)
Title: Paleontological and Phylogenetic Analyses of Evolution
Description: Provides tools for transforming, a posteriori time-scaling, and
modifying phylogenies containing extinct (i.e. fossil) lineages. In particular,
most users are interested in the functions timePaleoPhy, bin_timePaleoPhy,
cal3TimePaleoPhy and bin_cal3TimePaleoPhy, which date cladograms of
fossil taxa using stratigraphic data. This package also contains a large number
of likelihood functions for estimating sampling and diversification rates from
different types of data available from the fossil record (e.g. range data,
occurrence data, etc). paleotree users can also simulate diversification and
sampling in the fossil record using the function simFossilRecord, which is a
detailed simulator for branching birth-death-sampling processes composed of
discrete taxonomic units arranged in ancestor-descendant relationships. Users
can use simFossilRecord to simulate diversification in incompletely sampled
fossil records, under various models of morphological differentiation (i.e.
the various pattern [...truncated...]
Author: David W. Bapst, Peter J. Wagner
Maintainer: David W. Bapst <dwbapst@gmail.com>
Diff between paleotree versions 3.4.4 dated 2022-04-25 and 3.4.5 dated 2022-08-22
CHANGELOG | 3 +++ DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/timePaleoPhy.R | 2 +- build/partial.rdb |binary man/timePaleoPhy.Rd | 2 +- 6 files changed, 15 insertions(+), 12 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] ,
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 1.27.0 dated 2022-08-10 and 1.28.0 dated 2022-08-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/tracking-runs.R | 11 ++++++----- tests/testthat/test-tracking-runs.R | 6 ++++-- 4 files changed, 16 insertions(+), 13 deletions(-)
Title: Generalized Linear Model Data Sets
Description: Data sets from the book Generalized Linear Models with Examples in R by Dunn and Smyth.
Author: Peter K. Dunn [cre,aut], Gordon K. Smyth [aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between GLMsData versions 1.0.0 dated 2018-04-10 and 1.4 dated 2022-08-22
GLMsData-1.0.0/GLMsData/NEWS |only GLMsData-1.4/GLMsData/DESCRIPTION | 8 +-- GLMsData-1.4/GLMsData/MD5 | 33 +++++++------- GLMsData-1.4/GLMsData/NEWS.md |only GLMsData-1.4/GLMsData/build |only GLMsData-1.4/GLMsData/man/AIS.Rd | 2 GLMsData-1.4/GLMsData/man/babblers.Rd | 6 +- GLMsData-1.4/GLMsData/man/breakdown.Rd | 2 GLMsData-1.4/GLMsData/man/ccancer.Rd | 75 ++++++++++++++++----------------- GLMsData-1.4/GLMsData/man/ceo.Rd | 3 - GLMsData-1.4/GLMsData/man/cheese.Rd | 3 - GLMsData-1.4/GLMsData/man/cins.Rd | 9 ++- GLMsData-1.4/GLMsData/man/earinf.Rd | 13 ++--- GLMsData-1.4/GLMsData/man/feedrates.Rd | 6 +- GLMsData-1.4/GLMsData/man/mandible.Rd | 4 - GLMsData-1.4/GLMsData/man/motorins.Rd | 2 GLMsData-1.4/GLMsData/man/nambeware.Rd | 2 GLMsData-1.4/GLMsData/man/quilpie.Rd | 2 GLMsData-1.4/GLMsData/man/wacancer.Rd | 72 +++++++++++++++---------------- 19 files changed, 122 insertions(+), 120 deletions(-)
Title: Antarctic Spatial Data Manipulation
Description: Loads and creates spatial data, including layers and tools that are relevant
to the activities of the Commission for the Conservation of Antarctic Marine Living
Resources. Provides two categories of functions: load functions and create functions.
Load functions are used to import existing spatial layers from the online CCAMLR GIS
such as the ASD boundaries. Create functions are used to create layers from user data
such as polygons and grids.
Author: Stephane Thanassekos [aut, cre],
Keith Reid [aut],
Lucy Robinson [aut],
Michael D. Sumner [ctb],
Roger Bivand [ctb]
Maintainer: Stephane Thanassekos <stephane.thanassekos@ccamlr.org>
Diff between CCAMLRGIS versions 4.0.0 dated 2022-05-10 and 4.0.1 dated 2022-08-22
DESCRIPTION | 10 +- MD5 | 48 ++++----- NEWS.md | 4 R/CCAMLRGIS_DataDescription.R | 4 R/Pies.R | 4 R/add_labels.R | 1 R/assign_areas.r | 10 +- R/create.R | 32 +++--- R/get_depths.R | 8 - R/load.R | 2 R/project_data.r | 4 build/vignette.rds |binary inst/doc/CCAMLRGIS.html | 203 ++++++++++++++++++++++++++++++++++++++++-- man/SmallBathy.Rd | 4 man/add_col.Rd | 136 ++++++++++++++-------------- man/add_labels.Rd | 2 man/assign_areas.Rd | 10 +- man/create_Lines.Rd | 8 - man/create_Pies.Rd | 4 man/create_Points.Rd | 8 - man/create_PolyGrids.Rd | 8 - man/create_Polys.Rd | 8 - man/get_depths.Rd | 8 - man/load_Bathy.Rd | 2 man/project_data.Rd | 4 25 files changed, 363 insertions(+), 169 deletions(-)
Title: Physical and Physiological Ecosystem Properties from Eddy
Covariance Data
Description: Calculation of physical (e.g. aerodynamic conductance, surface temperature),
and physiological (e.g. canopy conductance, water-use efficiency) ecosystem properties
from eddy covariance data and accompanying meteorological measurements. Calculations
assume the land surface to behave like a 'big-leaf' and return bulk ecosystem/canopy variables.
Author: Juergen Knauer [aut, cre] ,
Thomas Wutzler [aut] ,
Alison Bennett [aut] ,
Soenke Zaehle [ctb] ,
Tarek El-Madany [ctb] ,
Mirco Migliavacca [ctb]
Maintainer: Juergen Knauer <J.Knauer@westernsydney.edu.au>
Diff between bigleaf versions 0.8.1 dated 2022-05-01 and 0.8.2 dated 2022-08-22
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ NEWS | 5 +++++ R/decoupling.r | 3 ++- R/meteorological_variables.r | 9 ++++++--- R/stability_correction.r | 3 ++- build/vignette.rds |binary inst/doc/bigleaf_tutorial.pdf |binary man/air.density.Rd | 2 +- man/decoupling.Rd | 2 +- man/latent.heat.vaporization.Rd | 2 +- man/psychrometric.constant.Rd | 2 +- man/stability.parameter.Rd | 2 +- 13 files changed, 37 insertions(+), 27 deletions(-)