Title: Visualize Genome Coverage with Various Annotations
Description: The goal of 'ggcoverage' is to simplify the process of visualizing genome coverage. It contains functions to
load data from BAM, BigWig or BedGraph files, create genome coverage plot, add various annotations to
the coverage plot, including base and amino acid annotation, GC annotation, gene annotation, transcript annotation, ideogram annotation and peak annotation.
Author: Yabing Song [aut, cre]
Maintainer: Yabing Song <songyb0519@gmail.com>
Diff between ggcoverage versions 0.7.0 dated 2022-08-18 and 0.7.1 dated 2022-09-05
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ R/geom_base.R | 40 ++++++++++++++++++++-------------------- R/geom_coverage.R | 24 ++++++++++++------------ R/geom_gc.R | 26 +++++++++++++------------- R/geom_gene.R | 28 ++++++++++++++-------------- R/geom_peak.R | 42 +++++++++++++++++++++--------------------- R/geom_transcript.R | 28 ++++++++++++++-------------- R/ggcoverage.R | 26 +++++++++++++------------- README.md | 9 +++++++-- inst/doc/ggcoverage.Rmd | 4 +++- inst/doc/ggcoverage.html | 9 +++++---- vignettes/ggcoverage.Rmd | 4 +++- 13 files changed, 140 insertions(+), 130 deletions(-)
Title: Script Based 'NONMEM' Model Development
Description: Industrialisation of 'NONMEM'
<https://www.iconplc.com/innovation/nonmem/> via fully and rapidly reusable
model development 'workflows' entirely within 'RStudio'. Quickly get started
with new models by importing 'NONMEM' templates from the built-in code
library. Manipulate 'NONMEM' code from within R either via the tracked
'manual edit' interface or 'programmatically' via convenience functions.
Script 'workflows' by piping sequences of model building steps from control
file creation, to execution, to post-processing and evaluation. Run caching
makes 'workflows' R markdown friendly for easy documentation of thoughts and
modelling decisions alongside executable code. Share, reuse and recycle
'workflows' for new problems.
Author: Tarj Sahota [aut, cre, cph],
AstraZeneca [cph],
Nuria Buil Bruna [ctb],
Stein Schalkwijk [ctb]
Maintainer: Tarj Sahota <t.sahota0@gmail.com>
Diff between NMproject versions 0.6.7 dated 2021-10-17 and 0.6.8 dated 2022-09-05
NMproject-0.6.7/NMproject/inst/extdata/CodeLibrary/Models/ADVAN2logDV.mod |only NMproject-0.6.7/NMproject/inst/extdata/CodeLibrary/Models/ADVAN2logDVM3.mod |only NMproject-0.6.7/NMproject/inst/extdata/CodeLibrary/Models/M3_bql.mod |only NMproject-0.6.7/NMproject/inst/extdata/examples/theopp/Models/patches/patch-tarjinde-2021-04-20-13-50-09 |only NMproject-0.6.7/NMproject/inst/extdata/examples/theopp/Models/patches/patch-tarjinde-2021-04-20-13-50-09.tmp |only NMproject-0.6.7/NMproject/inst/extdata/examples/theopp/Models/patches/patch-tarjinde-2021-06-04-17-07-24 |only NMproject-0.6.7/NMproject/inst/extdata/examples/theopp/Models/patches/patch-tarjinde-2021-06-04-17-07-24.tmp |only NMproject-0.6.7/NMproject/inst/extdata/examples/theopp/Models/patches/patch-tarjinde-2021-08-15-16-55-38 |only NMproject-0.6.7/NMproject/man/nm_default_dir.Rd |only NMproject-0.6.8/NMproject/DESCRIPTION | 52 - NMproject-0.6.8/NMproject/MD5 | 188 +++-- NMproject-0.6.8/NMproject/NAMESPACE | 21 NMproject-0.6.8/NMproject/NEWS.md | 50 + NMproject-0.6.8/NMproject/R/NMproject-options.R | 91 +- NMproject-0.6.8/NMproject/R/addin-apps.R | 21 NMproject-0.6.8/NMproject/R/apply_manual_edit.R | 35 - 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NMproject-0.6.8/NMproject/man/run_nm_single.Rd |only NMproject-0.6.8/NMproject/man/sge_parallel_execute.Rd | 18 NMproject-0.6.8/NMproject/man/system_nm_intern.Rd | 13 NMproject-0.6.8/NMproject/man/wait_for.Rd | 3 NMproject-0.6.8/NMproject/man/write_ctl.Rd | 4 NMproject-0.6.8/NMproject/tests/testthat/test-basic.R | 6 NMproject-0.6.8/NMproject/tests/testthat/test-manual_edit.R | 2 NMproject-0.6.8/NMproject/tests/testthat/test-subroutine.R |only NMproject-0.6.8/NMproject/tests/testthat/test-theopp.R | 32 NMproject-0.6.8/NMproject/tests/testthat/theopp.zip |binary 111 files changed, 1546 insertions(+), 1025 deletions(-)
Title: Additional Functions for Model Tuning
Description: The ability to tune models is important. 'finetune' enhances
the 'tune' package by providing more specialized methods for finding
reasonable values of model tuning parameters. Two racing methods
described by Kuhn (2014) <arXiv:1405.6974> are included. An iterative
search method using generalized simulated annealing (Bohachevsky,
Johnson and Stein, 1986) <doi:10.1080/00401706.1986.10488128> is also
included.
Author: Max Kuhn [aut, cre] ,
RStudio [cph, fnd]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between finetune versions 0.2.0 dated 2022-03-25 and 1.0.0 dated 2022-09-05
finetune-0.2.0/finetune/tests/helpers.R |only finetune-1.0.0/finetune/DESCRIPTION | 10 finetune-1.0.0/finetune/MD5 | 58 +- finetune-1.0.0/finetune/NEWS.md | 6 finetune-1.0.0/finetune/R/control_race.R | 39 - finetune-1.0.0/finetune/R/control_sim_anneal.R | 46 -- finetune-1.0.0/finetune/R/tune_race_anova.R | 14 finetune-1.0.0/finetune/R/tune_race_win_loss.R | 1 finetune-1.0.0/finetune/R/tune_sim_anneal.R | 22 finetune-1.0.0/finetune/README.md | 37 - finetune-1.0.0/finetune/build |only finetune-1.0.0/finetune/man/control_race.Rd | 24 - finetune-1.0.0/finetune/man/control_sim_anneal.Rd | 30 - finetune-1.0.0/finetune/man/finetune-package.Rd | 4 finetune-1.0.0/finetune/man/tune_race_anova.Rd | 58 +- finetune-1.0.0/finetune/tests/testthat.R | 4 finetune-1.0.0/finetune/tests/testthat/_snaps |only finetune-1.0.0/finetune/tests/testthat/helper.R |only finetune-1.0.0/finetune/tests/testthat/test-anova-filter.R | 225 ++++------ finetune-1.0.0/finetune/tests/testthat/test-anova-overall.R | 89 ++- finetune-1.0.0/finetune/tests/testthat/test-race-control.R | 90 ---- finetune-1.0.0/finetune/tests/testthat/test-random-integer-neighbors.R | 27 - finetune-1.0.0/finetune/tests/testthat/test-sa-control.R | 100 ---- finetune-1.0.0/finetune/tests/testthat/test-sa-decision.R | 5 finetune-1.0.0/finetune/tests/testthat/test-sa-misc.R | 120 ++--- finetune-1.0.0/finetune/tests/testthat/test-sa-overall.R | 204 +++++---- finetune-1.0.0/finetune/tests/testthat/test-sa-perturb.R | 21 finetune-1.0.0/finetune/tests/testthat/test-win-loss-filter.R | 47 -- finetune-1.0.0/finetune/tests/testthat/test-win-loss-overall.R | 96 +--- 29 files changed, 623 insertions(+), 754 deletions(-)
Title: Linguistic Matching and Accommodation
Description: Measure similarity between texts. Offers a variety of processing
tools and similarity metrics to facilitate flexible representation of texts and matching.
Implements forms of Language Style Matching (Ireland & Pennebaker, 2010) <doi:10.1037/a0020386>
and Latent Semantic Analysis (Landauer & Dumais, 1997) <doi:10.1037/0033-295X.104.2.211>.
Author: Micah Iserman
Maintainer: Micah Iserman <micah.iserman@gmail.com>
Diff between lingmatch versions 1.0.3 dated 2022-01-25 and 1.0.4 dated 2022-09-05
lingmatch-1.0.3/lingmatch/R/utils.R |only lingmatch-1.0.4/lingmatch/DESCRIPTION | 8 lingmatch-1.0.4/lingmatch/MD5 | 76 lingmatch-1.0.4/lingmatch/NEWS.md | 7 lingmatch-1.0.4/lingmatch/R/download.dict.R |only lingmatch-1.0.4/lingmatch/R/download.lspace.R |only lingmatch-1.0.4/lingmatch/R/lingmatch.R | 2340 ++---------- lingmatch-1.0.4/lingmatch/R/lma_dict.R |only lingmatch-1.0.4/lingmatch/R/lma_dtm.R |only lingmatch-1.0.4/lingmatch/R/lma_initdirs.R |only lingmatch-1.0.4/lingmatch/R/lma_lspace.R |only lingmatch-1.0.4/lingmatch/R/lma_meta.R |only lingmatch-1.0.4/lingmatch/R/lma_patcat.R |only lingmatch-1.0.4/lingmatch/R/lma_process.R |only lingmatch-1.0.4/lingmatch/R/lma_simets.R |only lingmatch-1.0.4/lingmatch/R/lma_termcat.R |only lingmatch-1.0.4/lingmatch/R/lma_weight.R |only lingmatch-1.0.4/lingmatch/R/read.dic.R |only lingmatch-1.0.4/lingmatch/R/read.segments.R |only lingmatch-1.0.4/lingmatch/R/select.dict.R |only lingmatch-1.0.4/lingmatch/R/select.lspace.R |only lingmatch-1.0.4/lingmatch/R/standardize.lspace.R |only lingmatch-1.0.4/lingmatch/README.md | 4 lingmatch-1.0.4/lingmatch/man/download.dict.Rd | 5 lingmatch-1.0.4/lingmatch/man/download.lspace.Rd | 5 lingmatch-1.0.4/lingmatch/man/lingmatch.Rd | 18 lingmatch-1.0.4/lingmatch/man/lma_dict.Rd | 22 lingmatch-1.0.4/lingmatch/man/lma_dtm.Rd | 8 lingmatch-1.0.4/lingmatch/man/lma_initdirs.Rd | 11 lingmatch-1.0.4/lingmatch/man/lma_lspace.Rd | 25 lingmatch-1.0.4/lingmatch/man/lma_meta.Rd | 4 lingmatch-1.0.4/lingmatch/man/lma_patcat.Rd | 28 lingmatch-1.0.4/lingmatch/man/lma_process.Rd | 14 lingmatch-1.0.4/lingmatch/man/lma_simets.Rd | 12 lingmatch-1.0.4/lingmatch/man/lma_termcat.Rd | 36 lingmatch-1.0.4/lingmatch/man/lma_weight.Rd | 58 lingmatch-1.0.4/lingmatch/man/read.dic.Rd | 26 lingmatch-1.0.4/lingmatch/man/read.segments.Rd | 17 lingmatch-1.0.4/lingmatch/man/select.dict.Rd | 8 lingmatch-1.0.4/lingmatch/man/select.lspace.Rd | 25 lingmatch-1.0.4/lingmatch/man/standardize.lspace.Rd | 7 lingmatch-1.0.4/lingmatch/tests/testthat/test-lingmatch.R | 332 - lingmatch-1.0.4/lingmatch/tests/testthat/test-lma_dtm.R | 82 lingmatch-1.0.4/lingmatch/tests/testthat/test-lma_lspace.R | 100 lingmatch-1.0.4/lingmatch/tests/testthat/test-lma_simets.R | 176 lingmatch-1.0.4/lingmatch/tests/testthat/test-lma_termcat.R | 188 lingmatch-1.0.4/lingmatch/tests/testthat/test-lma_weight.R | 123 lingmatch-1.0.4/lingmatch/tests/testthat/test-utils.R | 476 +- 48 files changed, 1553 insertions(+), 2688 deletions(-)
Title: A Fully Featured Logging Framework
Description: A flexible, feature-rich yet light-weight logging
framework based on 'R6' classes. It supports hierarchical loggers,
custom log levels, arbitrary data fields in log events, logging to
plaintext, 'JSON', (rotating) files, memory buffers. For extra
appenders that support logging to databases, email and push
notifications see the the package lgr.app.
Author: Stefan Fleck [aut, cre]
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Diff between lgr versions 0.4.3 dated 2021-09-16 and 0.4.4 dated 2022-09-05
DESCRIPTION | 8 LICENSE | 4 MD5 | 251 - NAMESPACE | 189 - NEWS.md | 426 +-- R/Appender.R | 3027 +++++++++++----------- R/Filter.R | 516 +-- R/Filterable.R | 202 - R/Layout.R | 864 +++--- R/LogEvent.R | 1119 ++++---- R/Logger.R | 2482 +++++++++--------- R/basic_config.R | 312 +- R/default_functions.R | 106 R/event_list.R | 315 +- R/get_logger.R | 273 - R/lgr-package.R | 480 +-- R/log_levels.R | 805 ++--- R/logger_config.R | 560 ++-- R/logger_index.R | 112 R/logger_tree.R | 340 +- R/read_json_lines.R | 40 R/simple_logging.R | 668 ++-- R/string_repr.R | 244 - R/use_logger.R | 88 R/utils-formatting.R | 138 - R/utils-logging.R | 324 +- R/utils-rd.R | 388 +- R/utils-rotor.R | 24 R/utils-sfmisc.R | 1624 +++++------ R/utils.R | 564 ++-- README.md | 502 +-- build/vignette.rds |binary inst/WORDLIST | 228 - inst/benchmarks/benchmarks.Rmd | 280 +- inst/configs/minimal.yaml | 8 inst/configs/recommended.yaml | 16 inst/doc/lgr.R | 801 ++--- inst/doc/lgr.Rmd | 1803 ++++++------- inst/doc/lgr.html | 2180 +++++++++------ inst/draft_vignettes/lgr-configs.Rmd | 118 inst/draft_vignettes/lgr-faq.Rmd | 66 inst/logger_comparison/logger_comparison.Rmd | 328 +- inst/logger_comparison/logger_comparison.html | 838 +++--- man/Appender.Rd | 260 - man/AppenderBuffer.Rd | 380 +- man/AppenderConsole.Rd | 168 - man/AppenderFile.Rd | 437 +-- man/AppenderFileRotating.Rd | 408 +- man/AppenderFileRotatingDate.Rd | 228 - man/AppenderFileRotatingTime.Rd | 366 +- man/AppenderMemory.Rd | 488 +-- man/AppenderTable.Rd | 216 - man/CannotInitializeAbstractClassError.Rd | 42 man/EventFilter.Rd | 200 - man/FilterForceLevel.Rd | 160 - man/FilterInject.Rd | 164 - man/Filterable.Rd | 246 - man/Layout.Rd | 182 - man/LayoutFormat.Rd | 436 +-- man/LayoutGlue.Rd | 252 - man/LayoutJson.Rd | 332 +- man/LogEvent.Rd | 261 - man/Logger.Rd | 1220 ++++---- man/LoggerGlue.Rd | 286 +- man/as.data.frame.LogEvent.Rd | 174 - man/as_LogEvent.Rd |only man/basic_config.Rd | 140 - man/colorize_levels.Rd | 71 man/default_exception_handler.Rd | 44 man/event_list.Rd | 179 - man/figures/yog-logo-plain.svg | 186 - man/figures/yog-logo.svg | 332 +- man/get_log_levels.Rd | 108 man/get_logger.Rd | 100 man/is_filter.Rd | 58 man/label_levels.Rd | 78 man/lgr-package.Rd | 122 man/logger_config.Rd | 116 man/logger_index.Rd | 48 man/logger_tree.Rd | 102 man/pad_right.Rd | 42 man/print.Appender.Rd | 54 man/print.LogEvent.Rd | 198 - man/print.Logger.Rd | 96 man/print.logger_tree.Rd | 50 man/read_json_lines.Rd | 44 man/simple_logging.Rd | 296 +- man/standardize_threshold.Rd | 133 man/string_repr.Rd | 80 man/suspend_logging.Rd | 98 man/system_infos.Rd | 68 man/toString.LogEvent.Rd | 44 man/use_logger.Rd | 55 man/with_log_level.Rd | 88 tests/testthat.R | 8 tests/testthat/manual_tests/test_AppenderDigest.R | 180 - tests/testthat/test_Appender.R | 969 +++---- tests/testthat/test_AppenderFileRotating.R | 958 +++--- tests/testthat/test_Filter.R | 138 - tests/testthat/test_Filterable.R | 130 tests/testthat/test_Layout.R | 190 - tests/testthat/test_LogEvent.R | 187 - tests/testthat/test_Logger.R | 915 +++--- tests/testthat/test_default_functions.R | 28 tests/testthat/test_event_list.R | 55 tests/testthat/test_get_logger.R | 312 +- tests/testthat/test_lgr-package.R | 136 tests/testthat/test_log_levels.R | 224 - tests/testthat/test_logger_config.R | 276 +- tests/testthat/test_logger_index.R | 28 tests/testthat/test_logger_tree.R | 122 tests/testthat/test_parallel.R | 122 tests/testthat/test_print_Appender.R | 74 tests/testthat/test_print_LogEvent.R | 131 tests/testthat/test_print_Logger.R | 60 tests/testthat/test_read_json_log.R | 52 tests/testthat/test_simple_logging.R | 262 - tests/testthat/test_string_repr.R | 54 tests/testthat/test_utils-logging.R | 150 - tests/testthat/test_utils-rd.R | 32 tests/testthat/test_utils.R | 198 - tests/testthat/testdata/lg_full.json | 56 tests/testthat/testdata/lg_full.yaml | 32 tests/testthat/testdata/lg_simple.json | 2 tests/testthat/testdata/lg_simple.yaml | 18 vignettes/lgr.Rmd | 1803 ++++++------- vignettes/log_flow.svg | 4 127 files changed, 21137 insertions(+), 20366 deletions(-)
Title: Compute Power or Sample Size for GWAS with Covariate Effect
Description: Fast computation of the required sample size or the
achieved power, for GWAS studies with different types of covariate
effects and different types of covariate-gene dependency structure.
For the detailed description of the methodology, see Zhang (2022)
"Power and Sample Size Computation for Genetic Association Studies
of Binary Traits: Accounting for Covariate Effects" <arXiv:2203.15641>.
Author: Ziang Zhang, Lei Sun
Maintainer: Ziang Zhang <aguero.zhang@mail.utoronto.ca>
Diff between SPCompute versions 1.0.1 dated 2022-04-01 and 1.0.2 dated 2022-09-05
SPCompute-1.0.1/SPCompute/R/functions.R |only SPCompute-1.0.2/SPCompute/DESCRIPTION | 8 ++-- SPCompute-1.0.2/SPCompute/MD5 | 18 +++++++---- SPCompute-1.0.2/SPCompute/NAMESPACE | 3 + SPCompute-1.0.2/SPCompute/R/01_single_E.R |only SPCompute-1.0.2/SPCompute/R/02_multiple_E_binary_trait.R |only SPCompute-1.0.2/SPCompute/R/03_multiple_E_continuous_trait.R |only SPCompute-1.0.2/SPCompute/R/04_wrapper.R |only SPCompute-1.0.2/SPCompute/man/Compute_Power.Rd | 2 - SPCompute-1.0.2/SPCompute/man/Compute_Power_multi.Rd |only SPCompute-1.0.2/SPCompute/man/Compute_Size.Rd | 2 - SPCompute-1.0.2/SPCompute/man/Compute_Size_multi.Rd |only SPCompute-1.0.2/SPCompute/man/check_parameters.Rd | 2 - SPCompute-1.0.2/SPCompute/man/convert_preva_to_intercept.Rd |only 14 files changed, 22 insertions(+), 13 deletions(-)
Title: Data Analysis for Censored Environmental Data
Description: Contains methods described by Dennis Helsel in
his book "Statistics for Censored Environmental Data
using Minitab and R" (2011) and courses and videos at
<https://practicalstats.com>. This package adds new functions to
the `NADA` Package.
Author: Paul Julian [aut, cre],
Dennis Helsel [aut, cph]
Maintainer: Paul Julian <pauljulianphd@gmail.com>
Diff between NADA2 versions 1.0.2 dated 2022-04-19 and 1.1.0 dated 2022-09-05
DESCRIPTION | 11 +++--- MD5 | 82 ++++++++++++++++++++++++++++++++----------------- NAMESPACE | 1 NEWS.md | 14 +++++++- R/Example1.R |only R/Example2.R |only R/Example3.R |only R/Gales_Creek.R |only R/Markers.R |only R/ReconLogistic.R |only R/TCE2.R |only R/cboxplot.R | 44 +++++++++++++++----------- R/cen1way.R | 24 ++++++++------ R/cen2means.R | 34 +++++++++++--------- R/cenCompareCdfs.R | 13 ++++--- R/cenCompareQQ.R | 68 +++++++++++++++++++++------------------- R/cenPredInt.R | 18 +++++----- R/cenQQ.R | 12 ++++--- R/cenTolInt.R | 79 ++++++++++++++++++++++++----------------------- R/cen_ecdf.R | 19 +++++++---- R/cen_paired.R | 6 ++- R/cenanova.R | 31 ++++++++++-------- R/centrend.R | 12 ++++--- R/centrendsea.R |only build/partial.rdb |binary build/vignette.rds |only data/Example1.rda |only data/Example2.rda |only data/Example3.rda |only data/Gales_Creek.rda |only data/Markers.rda |only data/ReconLogistic.rda |only data/TCE2.rda |only inst |only man/Example1.Rd |only man/Example2.Rd |only man/Example3.Rd |only man/Gales_Creek.Rd |only man/ReconLogistic.Rd |only man/TCE2.Rd |only man/cboxplot.Rd | 12 +++---- man/cen1way.Rd | 8 ++-- man/cen2means.Rd | 8 ++-- man/cenCompareCdfs.Rd | 6 +-- man/cenCompareQQ.Rd | 8 ++-- man/cenPredInt.Rd | 8 ++-- man/cenQQ.Rd | 6 +-- man/cenTolInt.Rd | 8 ++-- man/cen_ecdf.Rd | 14 +++++--- man/cenanova.Rd | 8 ++-- man/centrend.Rd | 5 ++ man/centrendsea.Rd |only man/markers.Rd |only vignettes |only 54 files changed, 329 insertions(+), 230 deletions(-)
Title: Fast Computation of Latent Correlations for Mixed Data
Description: The first stand-alone R package for computation of latent correlation that takes into account all variable types (continuous/binary/ordinal/zero-inflated),
comes with an optimized memory footprint, and is computationally efficient, essentially making latent correlation estimation almost as fast as rank-based correlation estimation.
The estimation is based on latent copula Gaussian models.
For continuous/binary types, see Fan, J., Liu, H., Ning, Y., and Zou, H. (2017).
For ternary type, see Quan X., Booth J.G. and Wells M.T. (2018) <arXiv:1809.06255>.
For truncated type or zero-inflated type, see Yoon G., Carroll R.J. and Gaynanova I. (2020) <doi:10.1093/biomet/asaa007>.
For approximation method of computation, see Yoon G., Müller C.L. and Gaynanova I. (2021) <doi:10.1080/10618600.2021.1882468>. The latter method uses multi-linear interpolation originally implemented in the R package <https://cran.r-project.org/package=chebpol>.
Author: Mingze Huang [aut, cre] ,
Grace Yoon [aut] ,
Christian Müller [aut] ,
Irina Gaynanova [aut]
Maintainer: Mingze Huang <mingzehuang@gmail.com>
Diff between latentcor versions 2.0.0 dated 2022-08-09 and 2.0.1 dated 2022-09-05
DESCRIPTION | 6 ++--- MD5 | 27 ++++++++++++----------- NAMESPACE | 1 NEWS.md | 4 +++ R/internal.R | 23 +++++++++++++++++++ R/interpolation.R | 4 +-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/latentcor.R | 2 - inst/doc/latentcor.Rmd | 2 - inst/doc/latentcor.html | 34 ++++++++++++++--------------- inst/doc/latentcor_math.html | 50 +++++++++++++++++++++---------------------- man/interpolation.Rd | 4 +-- man/r_ml_wrapper.Rd |only vignettes/latentcor.Rmd | 2 - 15 files changed, 94 insertions(+), 65 deletions(-)
Title: Sparse Group Lasso
Description: Efficient implementation of sparse group lasso with optional bound
constraints on the coefficients. It supports the use of a sparse design matrix
as well as
returning coefficient estimates in a sparse matrix. Furthermore, it correctly
calculates the degrees of freedom to allow for information criteria rather
than cross-validation with very large data. Finally, the interface to
compiled code avoids unnecessary copies and allows for the use of
long integers.
Author: Daniel J. McDonald [aut, cre],
Xiaoxuan Liang [aut],
Aaron Cohen [aut]
Maintainer: Daniel J. McDonald <daniel@stat.ubc.ca>
Diff between sparsegl versions 0.3.0 dated 2022-03-07 and 0.4.0 dated 2022-09-05
DESCRIPTION | 8 MD5 | 57 ++-- NAMESPACE | 2 NEWS.md |only R/estimate_risk.R | 63 ++-- R/glmnet-utilities.R | 7 R/norms.R | 9 R/sgl_logit.R | 18 - R/sgl_ls.R | 29 +- R/sparsegl-methods.R | 2 R/sparsegl.R | 61 ++-- R/zzz.R |only README.md | 12 build/partial.rdb |binary build/vignette.rds |binary inst/doc/sparsegl.R | 2 inst/doc/sparsegl.Rmd | 4 inst/doc/sparsegl.html | 472 +++++++++++++++++++++++++++++----- man/estimate_risk.Rd | 18 - man/figures/README-minimal-ex-1.png |binary man/grouped_sp_norm.Rd | 30 +- man/sparsegl.Rd | 21 + src/log_sgl_subfuns.f90 | 10 src/sgl_subfuns.f90 | 29 +- src/sparsegl.f90 | 50 ++- src/sparsegl_init.c | 12 src/sparsegllog.f90 | 35 +- src/spmatmul.f90 | 4 tests/testthat/test-l1penalty.R |only tests/testthat/test-risk_estimation.R | 43 ++- vignettes/sparsegl.Rmd | 4 31 files changed, 731 insertions(+), 271 deletions(-)
Title: Draw Samples with the Desired Properties from a Data Set
Description: A tool to sample data with the desired properties.Samples can be
drawn by purposive sampling with determining distributional
conditions, such as deviation from normality (skewness and kurtosis),
and sample size in quantitative research studies.
For purposive sampling, a researcher has something in mind and participants that
fit the purpose of the study are included (Etikan,Musa, & Alkassim, 2015)
<doi:10.11648/j.ajtas.20160501.11>.Purposive sampling can be useful for answering
many research questions (Klar & Leeper, 2019)
<doi:10.1002/9781119083771.ch21>.
Author: Kubra Atalay Kabasakal [aut, cre]
,
Huseyin Yıldız [ctb]
Maintainer: Kubra Atalay Kabasakal <katalay@hacettepe.edu.tr>
Diff between drawsample versions 1.0.0 dated 2021-03-01 and 1.0.1 dated 2022-09-05
drawsample-1.0.0/drawsample/inst/WORDLIST |only drawsample-1.0.0/drawsample/tests |only drawsample-1.0.1/drawsample/DESCRIPTION | 15 drawsample-1.0.1/drawsample/LICENSE |only drawsample-1.0.1/drawsample/MD5 | 57 - drawsample-1.0.1/drawsample/NAMESPACE | 3 drawsample-1.0.1/drawsample/NEWS.md | 9 drawsample-1.0.1/drawsample/R/constants_table.R | 12 drawsample-1.0.1/drawsample/R/draw_sample.R | 97 +- drawsample-1.0.1/drawsample/R/draw_sample_ir.R |only drawsample-1.0.1/drawsample/R/draw_sample_n.R | 52 - drawsample-1.0.1/drawsample/R/draw_sample_n_ir.R |only drawsample-1.0.1/drawsample/R/draw_sample_rep.R |only drawsample-1.0.1/drawsample/R/draw_sample_shiny.R | 641 +++++++++++++----- drawsample-1.0.1/drawsample/R/example_data.R | 4 drawsample-1.0.1/drawsample/R/globals.R | 2 drawsample-1.0.1/drawsample/R/likert_example.R |only drawsample-1.0.1/drawsample/R/package.R | 6 drawsample-1.0.1/drawsample/README.md | 133 --- drawsample-1.0.1/drawsample/build/partial.rdb |binary drawsample-1.0.1/drawsample/data/constants_table.rda |binary drawsample-1.0.1/drawsample/data/example_data.rda |binary drawsample-1.0.1/drawsample/data/likert_example.rda |only drawsample-1.0.1/drawsample/inst/CITATION | 16 drawsample-1.0.1/drawsample/man/constants_table.Rd | 13 drawsample-1.0.1/drawsample/man/draw_sample.Rd | 21 drawsample-1.0.1/drawsample/man/draw_sample_ir.Rd |only drawsample-1.0.1/drawsample/man/draw_sample_n.Rd | 23 drawsample-1.0.1/drawsample/man/draw_sample_n_ir.Rd |only drawsample-1.0.1/drawsample/man/draw_sample_rep.Rd |only drawsample-1.0.1/drawsample/man/draw_sample_shiny.Rd | 2 drawsample-1.0.1/drawsample/man/drawsample-package.Rd | 4 drawsample-1.0.1/drawsample/man/example_data.Rd | 5 drawsample-1.0.1/drawsample/man/figures |only drawsample-1.0.1/drawsample/man/likert_example.Rd |only 35 files changed, 696 insertions(+), 419 deletions(-)
Title: Training Run Tools for 'TensorFlow'
Description: Create and manage unique directories for each 'TensorFlow'
training run. Provides a unique, time stamped directory for each run
along with functions to retrieve the directory of the latest run or
latest several runs.
Author: Tomasz Kalinowski [ctb, cre],
Daniel Falbel [ctb],
JJ Allaire [aut],
RStudio [cph, fnd],
Mike Bostock [cph] ,
Masayuki Tanaka [cph] ,
jQuery Foundation [cph] ,
jQuery contributors [cph] ,
Shaun Bowe [cph] ,
Materialize [cph] ,
Yuxi You [cph] ,
Kevin [...truncated...]
Maintainer: Tomasz Kalinowski <tomasz@rstudio.com>
Diff between tfruns versions 1.5.0 dated 2021-02-26 and 1.5.1 dated 2022-09-05
DESCRIPTION | 17 ++- MD5 | 30 +++--- NEWS.md | 4 R/flags.R | 2 R/metrics_viewer.R | 3 R/run_metadata.R | 2 build/vignette.rds |binary inst/doc/managing.html | 81 ++++++++++-------- inst/doc/overview.R | 1 inst/doc/overview.Rmd | 27 +----- inst/doc/overview.html | 207 ++++++++++++++++++++++++++++++---------------- inst/doc/tuning.html | 156 ++++++++++++++++++++-------------- man/view_run_metrics.Rd | 15 ++- man/write_run_data.Rd | 2 man/write_run_metadata.Rd | 12 +- vignettes/overview.Rmd | 27 +----- 16 files changed, 343 insertions(+), 243 deletions(-)
Title: Mixed-Effect Models, with or without Spatial Random Effects
Description: Inference based on models with or without spatially-correlated random effects, multivariate responses, or non-Gaussian random effects (e.g., Beta). Variation in residual variance (heteroscedasticity) can itself be represented by a mixed-effect model. Both classical geostatistical models (Rousset and Ferdy 2014 <doi:10.1111/ecog.00566>), and Markov random field models on irregular grids (as considered in the 'INLA' package, <https://www.r-inla.org>), can be fitted, with distinct computational procedures exploiting the sparse matrix representations for the latter case and other autoregressive models. Laplace approximations are used for likelihood or restricted likelihood. Penalized quasi-likelihood and other variants discussed in the h-likelihood literature (Lee and Nelder 2001 <doi:10.1093/biomet/88.4.987>) are also implemented.
Author: Francois Rousset [aut, cre, cph]
,
Jean-Baptiste Ferdy [aut, cph],
Alexandre Courtiol [aut] ,
GSL authors [ctb]
Maintainer: Francois Rousset <francois.rousset@umontpellier.fr>
Diff between spaMM versions 3.12.0 dated 2022-06-18 and 3.13.0 dated 2022-09-05
spaMM-3.12.0/spaMM/R/sXaug_Matrix_CHM.R |only spaMM-3.13.0/spaMM/DESCRIPTION | 10 spaMM-3.13.0/spaMM/MD5 | 189 +- spaMM-3.13.0/spaMM/NAMESPACE | 6 spaMM-3.13.0/spaMM/R/CanonizeRanPars.R | 6 spaMM-3.13.0/spaMM/R/GLM.fit.R | 13 spaMM-3.13.0/spaMM/R/HLCor_body.R | 2 spaMM-3.13.0/spaMM/R/HLfit_Internals.R | 709 +++++++--- spaMM-3.13.0/spaMM/R/HLfit_b_internals.R | 59 spaMM-3.13.0/spaMM/R/HLfit_body.R | 361 +---- spaMM-3.13.0/spaMM/R/HLfit_body_augZXy.R | 13 spaMM-3.13.0/spaMM/R/HLframes.R | 2 spaMM-3.13.0/spaMM/R/IRLS_internals.R | 4 spaMM-3.13.0/spaMM/R/LLM.R |only spaMM-3.13.0/spaMM/R/LR.R | 9 spaMM-3.13.0/spaMM/R/LevM_internals.R | 9 spaMM-3.13.0/spaMM/R/LevM_v_h.R | 36 spaMM-3.13.0/spaMM/R/LevM_v_h_spprec.R | 24 spaMM-3.13.0/spaMM/R/MakeCovEst.R | 41 spaMM-3.13.0/spaMM/R/RcppExports.R | 12 spaMM-3.13.0/spaMM/R/augZXy_obj.R | 16 spaMM-3.13.0/spaMM/R/betaresp.R |only spaMM-3.13.0/spaMM/R/calc_logdisp_cov.R | 11 spaMM-3.13.0/spaMM/R/confint.R | 674 ++++----- spaMM-3.13.0/spaMM/R/constructors_IMRFs.R | 21 spaMM-3.13.0/spaMM/R/corrFamilies.R | 4 spaMM-3.13.0/spaMM/R/corrHLfit-internals.R | 60 spaMM-3.13.0/spaMM/R/corrPars.R | 334 ++-- spaMM-3.13.0/spaMM/R/correlationFns.R | 2 spaMM-3.13.0/spaMM/R/cov_new_fix.R | 19 spaMM-3.13.0/spaMM/R/extractors.R | 181 ++ spaMM-3.13.0/spaMM/R/fit_as_ZX.R | 293 +++- spaMM-3.13.0/spaMM/R/fit_as_sparsePrecision.R | 187 +- spaMM-3.13.0/spaMM/R/fitmecorrHLfit_body_internals.R | 82 - spaMM-3.13.0/spaMM/R/fitmv_body.R | 4 spaMM-3.13.0/spaMM/R/geo_info.R | 7 spaMM-3.13.0/spaMM/R/get_inits_by_glm.R | 32 spaMM-3.13.0/spaMM/R/hatvalues.R | 4 spaMM-3.13.0/spaMM/R/infomat.R |only spaMM-3.13.0/spaMM/R/llm.fit.R |only spaMM-3.13.0/spaMM/R/makeLowerUpper.R | 15 spaMM-3.13.0/spaMM/R/negbin.R | 109 + spaMM-3.13.0/spaMM/R/negbin1.R |only spaMM-3.13.0/spaMM/R/negbin2_dvl.R |only spaMM-3.13.0/spaMM/R/newPLS.R | 93 - spaMM-3.13.0/spaMM/R/plot.HLfit.R | 166 +- spaMM-3.13.0/spaMM/R/plot_effects.R | 18 spaMM-3.13.0/spaMM/R/poisson.R | 278 ++- spaMM-3.13.0/spaMM/R/postfit_internals.R | 31 spaMM-3.13.0/spaMM/R/predict.R | 90 - spaMM-3.13.0/spaMM/R/preprocess.R | 79 - spaMM-3.13.0/spaMM/R/preprocess_MV.R | 27 spaMM-3.13.0/spaMM/R/preprocess_internals.R | 113 - spaMM-3.13.0/spaMM/R/profile.R | 3 spaMM-3.13.0/spaMM/R/sXaug_EigenDense_QRP_Chol_scaled.R | 337 +++- spaMM-3.13.0/spaMM/R/sXaug_Matrix_CHM_Hess.R |only spaMM-3.13.0/spaMM/R/sXaug_Matrix_QRP_CHM.R | 257 ++- spaMM-3.13.0/spaMM/R/sXaug_sparsePrecisions.R | 538 ++++--- spaMM-3.13.0/spaMM/R/simulate.HL.R | 72 - spaMM-3.13.0/spaMM/R/spaMM.data.R | 12 spaMM-3.13.0/spaMM/R/spaMM_boot.R | 555 ++++--- spaMM-3.13.0/spaMM/R/summary.HL.R | 51 spaMM-3.13.0/spaMM/R/utils.R | 53 spaMM-3.13.0/spaMM/inst/NEWS.Rd | 31 spaMM-3.13.0/spaMM/man/AIC.Rd | 11 spaMM-3.13.0/spaMM/man/HLfit.Rd | 3 spaMM-3.13.0/spaMM/man/PLS-internals.Rd | 6 spaMM-3.13.0/spaMM/man/beta_resp.Rd |only spaMM-3.13.0/spaMM/man/confint.Rd | 17 spaMM-3.13.0/spaMM/man/extractors.Rd | 2 spaMM-3.13.0/spaMM/man/fixed.Rd | 37 spaMM-3.13.0/spaMM/man/get_infomat.Rd |only spaMM-3.13.0/spaMM/man/get_matrix.Rd | 12 spaMM-3.13.0/spaMM/man/get_ranPars.Rd | 5 spaMM-3.13.0/spaMM/man/llm.fit.Rd |only spaMM-3.13.0/spaMM/man/method.Rd | 7 spaMM-3.13.0/spaMM/man/negbin.Rd | 19 spaMM-3.13.0/spaMM/man/negbin1.Rd |only spaMM-3.13.0/spaMM/man/pedigree.Rd | 4 spaMM-3.13.0/spaMM/man/plot_effect.Rd | 27 spaMM-3.13.0/spaMM/man/poisson.Rd | 8 spaMM-3.13.0/spaMM/man/predVar.Rd | 2 spaMM-3.13.0/spaMM/man/predict.Rd | 2 spaMM-3.13.0/spaMM/man/spaMM.Rd | 2 spaMM-3.13.0/spaMM/man/spaMM_boot.Rd | 7 spaMM-3.13.0/spaMM/man/summary.HL.Rd | 2 spaMM-3.13.0/spaMM/man/vcov.Rd | 11 spaMM-3.13.0/spaMM/src/Makevars.win | 6 spaMM-3.13.0/spaMM/src/RcppExports.cpp | 39 spaMM-3.13.0/spaMM/src/spaMM_linear.cpp | 130 + spaMM-3.13.0/spaMM/tests/test-all.R | 2 spaMM-3.13.0/spaMM/tests/testthat/nestedFiles/test-mv-corrFamily.R | 2 spaMM-3.13.0/spaMM/tests/testthat/nestedFiles/test-mv-nested.R | 4 spaMM-3.13.0/spaMM/tests/testthat/test-IsoriX-new.R | 2 spaMM-3.13.0/spaMM/tests/testthat/test-LLM.R |only spaMM-3.13.0/spaMM/tests/testthat/test-corrFamilies.R | 2 spaMM-3.13.0/spaMM/tests/testthat/test-negbin1.R | 2 spaMM-3.13.0/spaMM/tests/testthat/test-obsInfo.R | 2 spaMM-3.13.0/spaMM/tests/testthat/test-pedigree.R | 4 spaMM-3.13.0/spaMM/tests/testthat/test-ranCoefs.R | 4 spaMM-3.13.0/spaMM/tests/testthat/test-simulate.R | 29 spaMM-3.13.0/spaMM/tests/testthat/test-spaMM.R | 8 102 files changed, 4275 insertions(+), 2509 deletions(-)
Title: Regularized Greedy Forest
Description: Regularized Greedy Forest wrapper of the 'Regularized Greedy Forest' <https://github.com/RGF-team/rgf/tree/master/python-package> 'python' package, which also includes a Multi-core implementation (FastRGF) <https://github.com/RGF-team/rgf/tree/master/FastRGF>.
Author: Lampros Mouselimis [aut, cre] ,
Ryosuke Fukatani [cph] ,
Nikita Titov [cph] ,
Tong Zhang [cph] ,
Rie Johnson [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between RGF versions 1.0.8 dated 2021-05-07 and 1.1.0 dated 2022-09-05
DESCRIPTION | 12 MD5 | 29 - NEWS.md | 8 R/package.R | 7 README.md | 18 build/vignette.rds |binary inst/CITATION | 2 inst/doc/the_RGF_package.html | 1037 +++++++++++++++----------------------- man/FastRGF_Classifier.Rd | 44 - man/FastRGF_Regressor.Rd | 44 - man/Internal_class.Rd | 60 +- man/RGF_Classifier.Rd | 44 - man/RGF_Regressor.Rd | 44 - tests/testthat/setup.R | 7 tests/testthat/teardown.R |only tests/testthat/test-RGF_package.R | 11 16 files changed, 601 insertions(+), 766 deletions(-)
Title: Fit Models Derived from Point Processes to Species Distributions
using 'inlabru'
Description: Integrated species distribution modeling is a rising field in quantitative ecology thanks to significant rises in the quantity of data available, increases in computational speed and the proven benefits of using such models.
Despite this, the general software to help ecologists construct such models in an easy-to-use framework is lacking.
We therefore introduce the R package 'PointedSDMs': which provides the tools to help ecologists set up integrated models and perform inference on them.
There are also functions within the package to help run spatial cross-validation for model selection, as well as generic plotting and predicting functions.
An introduction to these methods is discussed in Issac, Jarzyna, Keil, Dambly, Boersch-Supan, Browning, Freeman, Golding, Guillera-Arroita, Henrys, Jarvis, Lahoz-Monfort, Pagel, Pescott, Schmucki, Simmonds and O’Hara (2020) <doi:10.1016/j.tree.2019.08.006>.
Author: Philip Mostert [aut, cre],
Bob O'hara [aut]
Maintainer: Philip Mostert <philip.s.mostert@ntnu.no>
Diff between PointedSDMs versions 1.1.0 dated 2022-08-31 and 1.1.1 dated 2022-09-05
PointedSDMs-1.1.0/PointedSDMs/tests/testthat/testthat_runModel.R |only PointedSDMs-1.1.1/PointedSDMs/DESCRIPTION | 6 PointedSDMs-1.1.1/PointedSDMs/MD5 | 54 +-- PointedSDMs-1.1.1/PointedSDMs/NAMESPACE | 1 PointedSDMs-1.1.1/PointedSDMs/NEWS.md | 16 - PointedSDMs-1.1.1/PointedSDMs/R/bruSDM_predict.R | 6 PointedSDMs-1.1.1/PointedSDMs/R/datasetOut.R | 2 PointedSDMs-1.1.1/PointedSDMs/R/fitISDM.R |only PointedSDMs-1.1.1/PointedSDMs/R/runModel.R | 143 ---------- PointedSDMs-1.1.1/PointedSDMs/README.md | 8 PointedSDMs-1.1.1/PointedSDMs/inst/doc/Setophaga.R | 6 PointedSDMs-1.1.1/PointedSDMs/inst/doc/Setophaga.Rmd | 14 PointedSDMs-1.1.1/PointedSDMs/inst/doc/Setophaga.html | 18 - PointedSDMs-1.1.1/PointedSDMs/inst/doc/Solitary_tinamou.R | 4 PointedSDMs-1.1.1/PointedSDMs/inst/doc/Solitary_tinamou.Rmd | 8 PointedSDMs-1.1.1/PointedSDMs/inst/doc/Solitary_tinamou.html | 12 PointedSDMs-1.1.1/PointedSDMs/inst/doc/Spatiotemporal_example.R | 2 PointedSDMs-1.1.1/PointedSDMs/inst/doc/Spatiotemporal_example.Rmd | 4 PointedSDMs-1.1.1/PointedSDMs/inst/doc/Spatiotemporal_example.html | 8 PointedSDMs-1.1.1/PointedSDMs/man/datasetOut.Rd | 2 PointedSDMs-1.1.1/PointedSDMs/man/figures/README-predict_and_plot-1.png |binary PointedSDMs-1.1.1/PointedSDMs/man/fitISDM.Rd |only PointedSDMs-1.1.1/PointedSDMs/man/plot.Rd | 2 PointedSDMs-1.1.1/PointedSDMs/man/predict.Rd | 4 PointedSDMs-1.1.1/PointedSDMs/man/runModel.Rd | 2 PointedSDMs-1.1.1/PointedSDMs/tests/testthat/testthat_datasetOut.R | 2 PointedSDMs-1.1.1/PointedSDMs/tests/testthat/testthat_fitISDM.R |only PointedSDMs-1.1.1/PointedSDMs/vignettes/Setophaga.Rmd | 14 PointedSDMs-1.1.1/PointedSDMs/vignettes/Solitary_tinamou.Rmd | 8 PointedSDMs-1.1.1/PointedSDMs/vignettes/Spatiotemporal_example.Rmd | 4 30 files changed, 104 insertions(+), 246 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data
management system with support for the Structured Query Language (SQL). This package includes all of
DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Muehleisen [aut, cre] ,
Mark Raasveldt [aut] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrochers [cph],
Victor Z [...truncated...]
Maintainer: Hannes Muehleisen <hannes@cwi.nl>
Diff between duckdb versions 0.4.0 dated 2022-06-21 and 0.5.0 dated 2022-09-05
duckdb-0.4.0/duckdb/src/duckdb/src/common/arrow_wrapper.cpp |only duckdb-0.4.0/duckdb/src/duckdb/src/common/types/batched_chunk_collection.cpp |only duckdb-0.4.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_simple_aggregate.cpp |only duckdb-0.4.0/duckdb/src/duckdb/src/execution/operator/scan/physical_chunk_scan.cpp |only duckdb-0.4.0/duckdb/src/duckdb/src/execution/physical_plan/plan_chunk_get.cpp |only duckdb-0.4.0/duckdb/src/duckdb/src/include/duckdb/common/arrow.hpp |only duckdb-0.4.0/duckdb/src/duckdb/src/include/duckdb/common/arrow_wrapper.hpp |only duckdb-0.4.0/duckdb/src/duckdb/src/include/duckdb/common/result_arrow_wrapper.hpp |only duckdb-0.4.0/duckdb/src/duckdb/src/include/duckdb/common/types/batched_chunk_collection.hpp |only duckdb-0.4.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_simple_aggregate.hpp |only duckdb-0.4.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_chunk_scan.hpp |only duckdb-0.4.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_chunk_get.hpp |only duckdb-0.5.0/duckdb/DESCRIPTION | 10 duckdb-0.5.0/duckdb/MD5 | 1937 duckdb-0.5.0/duckdb/NAMESPACE | 4 duckdb-0.5.0/duckdb/R/Connection.R | 9 duckdb-0.5.0/duckdb/R/Driver.R | 20 duckdb-0.5.0/duckdb/R/Result.R | 2 duckdb-0.5.0/duckdb/R/cpp11.R | 24 duckdb-0.5.0/duckdb/R/dbBind__duckdb_result.R | 2 duckdb-0.5.0/duckdb/R/dbConnect__duckdb_driver.R | 5 duckdb-0.5.0/duckdb/R/dbDataType__duckdb_driver.R | 3 duckdb-0.5.0/duckdb/R/dbDisconnect__duckdb_connection.R | 1 duckdb-0.5.0/duckdb/R/dbFetch__duckdb_result.R | 4 duckdb-0.5.0/duckdb/R/dbQuoteIdentifier__duckdb_connection.R |only duckdb-0.5.0/duckdb/R/dbQuoteLiteral__duckdb_connection.R | 2 duckdb-0.5.0/duckdb/R/print__duckdb_explain.R | 3 duckdb-0.5.0/duckdb/R/register.R | 8 duckdb-0.5.0/duckdb/R/substrait.R |only duckdb-0.5.0/duckdb/R/zzz.R | 4 duckdb-0.5.0/duckdb/man/backend-duckdb.Rd | 7 duckdb-0.5.0/duckdb/man/duckdb.Rd | 12 duckdb-0.5.0/duckdb/man/duckdb_connection-class.Rd | 10 duckdb-0.5.0/duckdb/man/duckdb_get_substrait.Rd |only duckdb-0.5.0/duckdb/man/duckdb_get_substrait_json.Rd |only duckdb-0.5.0/duckdb/man/duckdb_prepare_substrait.Rd |only duckdb-0.5.0/duckdb/src/Makevars | 4 duckdb-0.5.0/duckdb/src/Makevars.win | 4 duckdb-0.5.0/duckdb/src/altrep.cpp | 32 duckdb-0.5.0/duckdb/src/connection.cpp | 2 duckdb-0.5.0/duckdb/src/cpp11.cpp | 112 duckdb-0.5.0/duckdb/src/database.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/extension/parquet/column_reader.cpp | 45 duckdb-0.5.0/duckdb/src/duckdb/extension/parquet/column_writer.cpp | 604 duckdb-0.5.0/duckdb/src/duckdb/extension/parquet/include/column_writer.hpp | 56 duckdb-0.5.0/duckdb/src/duckdb/extension/parquet/include/generated_column_reader.hpp |only duckdb-0.5.0/duckdb/src/duckdb/extension/parquet/include/parquet_reader.hpp | 11 duckdb-0.5.0/duckdb/src/duckdb/extension/parquet/include/parquet_writer.hpp | 5 duckdb-0.5.0/duckdb/src/duckdb/extension/parquet/include/resizable_buffer.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/extension/parquet/include/thrift_tools.hpp | 10 duckdb-0.5.0/duckdb/src/duckdb/extension/parquet/parquet-extension.cpp | 279 duckdb-0.5.0/duckdb/src/duckdb/extension/parquet/parquet_metadata.cpp | 26 duckdb-0.5.0/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp | 83 duckdb-0.5.0/duckdb/src/duckdb/extension/parquet/parquet_writer.cpp | 25 duckdb-0.5.0/duckdb/src/duckdb/src/catalog/catalog.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/catalog/catalog_entry/index_catalog_entry.cpp | 44 duckdb-0.5.0/duckdb/src/duckdb/src/catalog/catalog_entry/scalar_macro_catalog_entry.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/catalog/catalog_entry/schema_catalog_entry.cpp | 22 duckdb-0.5.0/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 182 duckdb-0.5.0/duckdb/src/duckdb/src/catalog/catalog_entry/table_function_catalog_entry.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/catalog/catalog_entry/view_catalog_entry.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/catalog/catalog_search_path.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/catalog/default/default_functions.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/catalog/default/default_types.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/common/allocator.cpp | 183 duckdb-0.5.0/duckdb/src/duckdb/src/common/arrow |only duckdb-0.5.0/duckdb/src/duckdb/src/common/checksum.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/common/constants.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/common/enums/expression_type.cpp | 81 duckdb-0.5.0/duckdb/src/duckdb/src/common/enums/optimizer_type.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/common/enums/physical_operator_type.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/common/enums/statement_type.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/common/exception.cpp | 99 duckdb-0.5.0/duckdb/src/duckdb/src/common/field_writer.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/common/file_buffer.cpp | 40 duckdb-0.5.0/duckdb/src/duckdb/src/common/file_system.cpp | 39 duckdb-0.5.0/duckdb/src/duckdb/src/common/hive_partitioning.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/common/local_file_system.cpp | 67 duckdb-0.5.0/duckdb/src/duckdb/src/common/operator/cast_operators.cpp | 104 duckdb-0.5.0/duckdb/src/duckdb/src/common/operator/string_cast.cpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/common/preserved_error.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/common/radix_partitioning.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/common/row_operations/row_aggregate.cpp | 28 duckdb-0.5.0/duckdb/src/duckdb/src/common/row_operations/row_external.cpp | 57 duckdb-0.5.0/duckdb/src/duckdb/src/common/row_operations/row_gather.cpp | 94 duckdb-0.5.0/duckdb/src/duckdb/src/common/row_operations/row_heap_scatter.cpp | 40 duckdb-0.5.0/duckdb/src/duckdb/src/common/row_operations/row_match.cpp | 19 duckdb-0.5.0/duckdb/src/duckdb/src/common/row_operations/row_radix_scatter.cpp | 64 duckdb-0.5.0/duckdb/src/duckdb/src/common/row_operations/row_scatter.cpp | 17 duckdb-0.5.0/duckdb/src/duckdb/src/common/serializer/buffered_deserializer.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/common/sort/merge_sorter.cpp | 126 duckdb-0.5.0/duckdb/src/duckdb/src/common/sort/radix_sort.cpp | 20 duckdb-0.5.0/duckdb/src/duckdb/src/common/sort/sort_state.cpp | 92 duckdb-0.5.0/duckdb/src/duckdb/src/common/sort/sorted_block.cpp | 155 duckdb-0.5.0/duckdb/src/duckdb/src/common/string_util.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/common/types.cpp | 259 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/batched_data_collection.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/common/types/chunk_collection.cpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/column_data_allocator.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/common/types/column_data_collection.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/common/types/column_data_collection_segment.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/common/types/data_chunk.cpp | 516 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/date.cpp | 12 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/decimal.cpp | 24 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/hyperloglog.cpp | 14 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/interval.cpp | 17 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/row_data_collection.cpp | 25 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/row_data_collection_scanner.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/common/types/row_layout.cpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/string_heap.cpp | 26 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/string_type.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/timestamp.cpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/uuid.cpp | 40 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/validity_mask.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/value.cpp | 23 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/vector.cpp | 75 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/vector_buffer.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/common/types/vector_cache.cpp | 19 duckdb-0.5.0/duckdb/src/duckdb/src/common/vector_operations/boolean_operators.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/common/vector_operations/comparison_operators.cpp | 9 duckdb-0.5.0/duckdb/src/duckdb/src/common/vector_operations/is_distinct_from.cpp | 36 duckdb-0.5.0/duckdb/src/duckdb/src/common/vector_operations/null_operations.cpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/common/vector_operations/vector_cast.cpp | 14 duckdb-0.5.0/duckdb/src/duckdb/src/common/vector_operations/vector_hash.cpp | 17 duckdb-0.5.0/duckdb/src/duckdb/src/common/vector_operations/vector_storage.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/execution/aggregate_hashtable.cpp | 123 duckdb-0.5.0/duckdb/src/duckdb/src/execution/base_aggregate_hashtable.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/execution/expression_executor.cpp | 30 duckdb-0.5.0/duckdb/src/duckdb/src/execution/expression_executor/execute_case.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/execution/expression_executor/execute_comparison.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/execution/expression_executor/execute_function.cpp | 37 duckdb-0.5.0/duckdb/src/duckdb/src/execution/expression_executor/execute_operator.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/execution/expression_executor/execute_parameter.cpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/execution/expression_executor/execute_reference.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/execution/expression_executor_state.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/execution/index/art/art.cpp | 528 duckdb-0.5.0/duckdb/src/duckdb/src/execution/index/art/art_key.cpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/execution/index/art/iterator.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/execution/index/art/leaf.cpp | 65 duckdb-0.5.0/duckdb/src/duckdb/src/execution/index/art/node.cpp | 162 duckdb-0.5.0/duckdb/src/duckdb/src/execution/index/art/node16.cpp | 58 duckdb-0.5.0/duckdb/src/duckdb/src/execution/index/art/node256.cpp | 44 duckdb-0.5.0/duckdb/src/duckdb/src/execution/index/art/node4.cpp | 73 duckdb-0.5.0/duckdb/src/duckdb/src/execution/index/art/node48.cpp | 47 duckdb-0.5.0/duckdb/src/duckdb/src/execution/index/art/prefix.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/execution/index/art/swizzleable_pointer.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/execution/join_hashtable.cpp | 612 duckdb-0.5.0/duckdb/src/duckdb/src/execution/nested_loop_join/nested_loop_join_inner.cpp | 12 duckdb-0.5.0/duckdb/src/duckdb/src/execution/nested_loop_join/nested_loop_join_mark.cpp | 19 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/aggregate/aggregate_object.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/aggregate/distinct_aggregate_data.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_hash_aggregate.cpp | 109 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_perfecthash_aggregate.cpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_streaming_window.cpp | 109 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_ungrouped_aggregate.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/aggregate/physical_window.cpp | 1867 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/filter/physical_filter.cpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/helper/physical_batch_collector.cpp | 36 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/helper/physical_limit.cpp | 36 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/helper/physical_limit_percent.cpp | 45 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/helper/physical_load.cpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/helper/physical_materialized_collector.cpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/helper/physical_reservoir_sample.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/helper/physical_result_collector.cpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/helper/physical_set.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/helper/physical_streaming_limit.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/helper/physical_streaming_sample.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/helper/physical_vacuum.cpp | 77 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/join/outer_join_marker.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/join/perfect_hash_join_executor.cpp | 32 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/join/physical_blockwise_nl_join.cpp | 155 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/join/physical_comparison_join.cpp | 33 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/join/physical_cross_product.cpp | 119 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/join/physical_delim_join.cpp | 36 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp | 744 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/join/physical_iejoin.cpp | 132 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/join/physical_index_join.cpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/join/physical_join.cpp | 38 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/join/physical_nested_loop_join.cpp | 202 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/join/physical_piecewise_merge_join.cpp | 65 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/join/physical_range_join.cpp | 44 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/order/physical_order.cpp | 25 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/order/physical_top_n.cpp | 46 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/persistent/buffered_csv_reader.cpp | 78 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_to_file.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_delete.cpp | 41 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_export.cpp | 23 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_insert.cpp | 44 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/persistent/physical_update.cpp | 48 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/projection/physical_projection.cpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/projection/physical_tableinout_function.cpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/projection/physical_unnest.cpp | 68 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/scan/physical_column_data_scan.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/scan/physical_expression_scan.cpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/scan/physical_table_scan.cpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_index.cpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/set/physical_recursive_cte.cpp | 39 duckdb-0.5.0/duckdb/src/duckdb/src/execution/operator/set/physical_union.cpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/execution/partitionable_hashtable.cpp | 33 duckdb-0.5.0/duckdb/src/duckdb/src/execution/perfect_aggregate_hashtable.cpp | 20 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_operator.cpp | 23 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_aggregate.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_column_data_get.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_comparison_join.cpp | 32 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_copy_to_file.cpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_delim_get.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_delim_join.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_explain.cpp | 14 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_export.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_expression_get.cpp | 19 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_limit.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_prepare.cpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_recursive_cte.cpp | 17 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_show_select.cpp | 14 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_simple.cpp | 23 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan/plan_window.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/execution/physical_plan_generator.cpp | 138 duckdb-0.5.0/duckdb/src/duckdb/src/execution/radix_partitioned_hashtable.cpp | 131 duckdb-0.5.0/duckdb/src/duckdb/src/execution/reservoir_sample.cpp | 19 duckdb-0.5.0/duckdb/src/duckdb/src/execution/window_segment_tree.cpp | 18 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/algebraic/avg.cpp | 55 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/distributive/approx_count.cpp | 24 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/distributive/arg_min_max.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/distributive/bitagg.cpp | 41 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/distributive/bool.cpp | 24 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/distributive/count.cpp | 25 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/distributive/entropy.cpp | 32 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/distributive/first.cpp | 139 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/distributive/kurtosis.cpp | 12 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/distributive/minmax.cpp | 69 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/distributive/product.cpp | 12 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/distributive/skew.cpp | 12 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/distributive/string_agg.cpp | 67 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/distributive/sum.cpp | 93 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/holistic/approximate_quantile.cpp | 82 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/holistic/mode.cpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/holistic/quantile.cpp | 152 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/holistic/reservoir_quantile.cpp | 118 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/nested/histogram.cpp | 31 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/nested/list.cpp | 802 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/regression/regr_avg.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/regression/regr_intercept.cpp | 17 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/regression/regr_r2.cpp | 27 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/regression/regr_sxx_syy.cpp | 31 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/regression/regr_sxy.cpp | 25 duckdb-0.5.0/duckdb/src/duckdb/src/function/aggregate/sorted_aggregate_function.cpp | 39 duckdb-0.5.0/duckdb/src/duckdb/src/function/function.cpp | 150 duckdb-0.5.0/duckdb/src/duckdb/src/function/function_set.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/function/macro_function.cpp | 19 duckdb-0.5.0/duckdb/src/duckdb/src/function/pragma/pragma_functions.cpp | 41 duckdb-0.5.0/duckdb/src/duckdb/src/function/pragma/pragma_queries.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/date/current.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/date/date_part.cpp | 51 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/date/date_trunc.cpp | 114 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/date/strftime.cpp | 110 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/enum/enum_functions_implementation.cpp | 36 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/generic/alias.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/generic/constant_or_null.cpp | 35 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/generic/current_setting.cpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/generic/hash.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/generic/least.cpp | 31 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/generic/stats.cpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/generic/typeof.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/generic_functions.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/list/array_slice.cpp | 33 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/list/contains_or_position.cpp | 52 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/list/flatten.cpp | 24 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/list/list_aggregates.cpp | 125 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/list/list_concat.cpp | 29 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/list/list_extract.cpp | 46 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/list/list_lambdas.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/list/list_sort.cpp | 61 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/list/list_value.cpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/list/range.cpp | 14 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/map/cardinality.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/map/map.cpp | 25 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/map/map_extract.cpp | 36 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/map/map_from_entries.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/math/numeric.cpp | 41 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/math/random.cpp | 39 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/math/setseed.cpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/nested_functions.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/operators/arithmetic.cpp | 151 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/operators/subtract.cpp | 12 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/sequence/nextval.cpp | 17 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/string/caseconvert.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/string/concat.cpp | 26 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/string/instr.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/string/jaro_winkler.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/string/length.cpp | 21 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/string/like.cpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/string/printf.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/string/regexp.cpp | 57 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/string/string_split.cpp | 36 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/string/substring.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/string_functions.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/struct/struct_extract.cpp | 19 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/struct/struct_insert.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/struct/struct_pack.cpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/system/aggregate_export.cpp | 71 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar/system/system_functions.cpp | 12 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar_function.cpp | 21 duckdb-0.5.0/duckdb/src/duckdb/src/function/scalar_macro_function.cpp | 22 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/arrow.cpp | 44 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/arrow_conversion.cpp | 48 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/copy_csv.cpp | 19 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/glob.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/pragma_detailed_profiling_output.cpp | 23 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/pragma_last_profiling_output.cpp | 21 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/range.cpp | 40 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/read_csv.cpp | 165 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/summary.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/system/duckdb_extensions.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/function/table/system/duckdb_functions.cpp | 79 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/system/pragma_functions.cpp | 12 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/system/pragma_table_info.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/system/test_all_types.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/system/test_vector_types.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/system_functions.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/table_scan.cpp | 81 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/unnest.cpp | 33 duckdb-0.5.0/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/function/table_function.cpp | 9 duckdb-0.5.0/duckdb/src/duckdb/src/function/table_macro_function.cpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/function/udf_function.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb.h | 144 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/aggregate_function_catalog_entry.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/column_dependency_manager.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/index_catalog_entry.hpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/macro_catalog_entry.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/pragma_function_catalog_entry.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/scalar_function_catalog_entry.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/scalar_macro_catalog_entry.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_catalog_entry.hpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_function_catalog_entry.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_macro_catalog_entry.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/view_catalog_entry.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_search_path.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/allocator.hpp | 54 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/arrow |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/bitpacking.hpp | 46 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/constants.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/dl.hpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/enum_class_hash.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/enums/catalog_type.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/enums/expression_type.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/enums/index_type.hpp | 12 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/enums/optimizer_type.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/enums/physical_operator_type.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/enums/profiler_format.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/enums/set_operation_type.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/enums/statement_type.hpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/enums/undo_flags.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/exception.hpp | 67 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/field_writer.hpp | 63 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/file_system.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/hive_partitioning.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/limits.hpp | 96 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/operator/comparison_operators.hpp | 24 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/preserved_error.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/radix.hpp | 54 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/radix_partitioning.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/row_operations/row_operations.hpp | 34 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/serializer.hpp | 47 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_deserializer.hpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_file_writer.hpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/serializer/buffered_serializer.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/sort/sort.hpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/sort/sorted_block.hpp | 104 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/string_map_set.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/string_util.hpp | 9 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types.hpp | 178 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/arrow_aux_data.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/batched_data_collection.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/blob.hpp | 22 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/cast_helpers.hpp | 41 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/chunk_collection.hpp | 11 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_allocator.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_collection.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_collection_iterators.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_collection_segment.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_scan_states.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/data_chunk.hpp | 26 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/date.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/decimal.hpp | 39 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/hash.hpp | 29 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/hugeint.hpp | 39 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/hyperloglog.hpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/interval.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/row_data_collection.hpp | 50 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/row_data_collection_scanner.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/row_layout.hpp | 23 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/selection_vector.hpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/string_heap.hpp | 37 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/string_type.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/uuid.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/vector.hpp | 24 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/vector_buffer.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/types/vector_cache.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/aggregate_executor.hpp | 163 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/binary_executor.hpp | 22 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/decimal_cast.hpp | 22 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/senary_executor.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/septenary_executor.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/ternary_executor.hpp | 28 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/unary_executor.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/vector_operations.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/aggregate_hashtable.hpp | 31 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/base_aggregate_hashtable.hpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/executor.hpp | 25 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/expression_executor.hpp | 26 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/art.hpp | 63 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/art_key.hpp | 18 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/iterator.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/leaf.hpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node.hpp | 49 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node16.hpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node256.hpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node4.hpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node48.hpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/prefix.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/index/art/swizzleable_pointer.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/join_hashtable.hpp | 130 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/nested_loop_join.hpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/aggregate_object.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/distinct_aggregate_data.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/grouped_aggregate_data.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_hash_aggregate.hpp | 31 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_perfecthash_aggregate.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_streaming_window.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_ungrouped_aggregate.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_window.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/filter/physical_filter.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_limit.hpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_load.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_streaming_limit.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_streaming_sample.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_vacuum.hpp | 28 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/outer_join_marker.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/perfect_hash_join_executor.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_blockwise_nl_join.hpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_comparison_join.hpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_cross_product.hpp | 37 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_delim_join.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_hash_join.hpp | 20 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_index_join.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_join.hpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_nested_loop_join.hpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_piecewise_merge_join.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_range_join.hpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/list.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_top_n.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/buffered_csv_reader.hpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_projection.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_tableinout_function.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_unnest.hpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_column_data_scan.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_expression_scan.hpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/set/physical_recursive_cte.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/partitionable_hashtable.hpp | 11 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/perfect_aggregate_hashtable.hpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_operator.hpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/physical_plan_generator.hpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/radix_partitioned_hashtable.hpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/execution/reservoir_sample.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate/algebraic/corr.hpp | 24 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate/algebraic/covar.hpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate/algebraic/stddev.hpp | 21 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate/distributive_functions.hpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate/nested_functions.hpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate/regression/regr_count.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate/regression/regr_slope.hpp | 18 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate/sum_helpers.hpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/aggregate_function.hpp | 165 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/compression_function.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/copy_function.hpp | 17 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/function.hpp | 63 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/function_serialization.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/function_set.hpp | 52 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/macro_function.hpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/generic_functions.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/nested_functions.hpp | 34 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/strftime.hpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/scalar/string_functions.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/scalar_function.hpp | 44 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/scalar_macro_function.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/table/arrow.hpp | 31 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/table/read_csv.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/table/system_functions.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/table/table_scan.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/table_function.hpp | 14 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/table_macro_function.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/function/udf_function.hpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/appender.hpp | 21 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/capi_internal.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/client_config.hpp | 23 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/client_context.hpp | 19 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/client_data.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/config.hpp | 49 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/connection.hpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/database.hpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/extension_helper.hpp | 17 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/materialized_query_result.hpp | 31 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/pending_query_result.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/prepared_statement.hpp | 9 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/prepared_statement_data.hpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/query_profiler.hpp | 11 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/query_result.hpp | 79 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/main/settings.hpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/optimizer/cardinality_estimator.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/optimizer/estimated_properties.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/optimizer/filter_pullup.hpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/optimizer/in_clause_rewriter.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_node.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/query_graph.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order_optimizer.hpp | 50 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/optimizer/optimizer_extension.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parallel/task_scheduler.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/column_definition.hpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/bound_expression.hpp | 34 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/lambda_expression.hpp | 9 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/operator_expression.hpp | 14 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/expression/parameter_expression.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_info.hpp | 86 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_aggregate_function_info.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_collation_info.hpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_copy_function_info.hpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_function_info.hpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_index_info.hpp | 25 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_info.hpp | 22 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_pragma_function_info.hpp | 17 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_scalar_function_info.hpp | 18 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_schema_info.hpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_sequence_info.hpp | 20 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_table_function_info.hpp | 20 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_table_info.hpp | 26 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_type_info.hpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_view_info.hpp | 24 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/exported_table_data.hpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/vacuum_info.hpp | 29 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parser.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/parser_extension.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/query_node.hpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/sql_statement.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/delete_statement.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/extension_statement.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/insert_statement.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/list.hpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/logical_plan_statement.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/update_statement.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/statement/vacuum_statement.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/tableref/table_function_ref.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/tokens.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/binder.hpp | 30 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_constraint.hpp | 9 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_parameter_map.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/bound_result_modifier.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression.hpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_aggregate_expression.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_between_expression.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_case_expression.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_cast_expression.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_columnref_expression.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_comparison_expression.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_conjunction_expression.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_constant_expression.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_default_expression.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_function_expression.hpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_lambda_expression.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_operator_expression.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_parameter_data.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_parameter_expression.hpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_reference_expression.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_subquery_expression.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_unnest_expression.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_window_expression.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression/list.hpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder.hpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/order_binder.hpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/filter/conjunction_filter.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/filter/constant_filter.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/filter/null_filter.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/joinside.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/logical_operator.hpp | 51 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/logical_tokens.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/list.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_aggregate.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_any_join.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_column_data_get.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_comparison_join.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_copy_to_file.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_create.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_create_index.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_create_table.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_cross_product.hpp | 9 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_cteref.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delete.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delim_get.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delim_join.hpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_distinct.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_dummy_scan.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_empty_result.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_execute.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_explain.hpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_export.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_expression_get.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_filter.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_get.hpp | 12 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_insert.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_join.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_limit.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_limit_percent.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_order.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_pragma.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_prepare.hpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_projection.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_recursive_cte.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_sample.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_set.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_set_operation.hpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_show.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_simple.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_top_n.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_unnest.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_update.hpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_window.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/parsed_data/bound_create_table_info.hpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/plan_serialization.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/planner.hpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/query_node/bound_set_operation_node.hpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/subquery/flatten_dependent_join.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/table_binding.hpp | 19 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/planner/table_filter.hpp | 9 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/arena_allocator.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/block.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/block_handle.hpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/buffer_handle.hpp | 25 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/managed_buffer.hpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp | 20 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/table_data_writer.hpp | 14 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint/write_overflow_strings_to_disk.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint_manager.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/data_table.hpp | 77 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/index.hpp | 12 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/meta_block_reader.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/object_cache.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/base_statistics.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/distinct_statistics.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/numeric_statistics.hpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/string_statistics.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/statistics/validity_statistics.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/string_uncompressed.hpp | 52 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_checkpoint_state.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_data.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/table/column_segment.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/table/scan_state.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/table/standard_column_data.hpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/storage/table_index.hpp |only duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/transaction/commit_state.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/transaction/local_storage.hpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/transaction/transaction.hpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/transaction/undo_buffer.hpp | 22 duckdb-0.5.0/duckdb/src/duckdb/src/include/duckdb/verification |only duckdb-0.5.0/duckdb/src/duckdb/src/main/appender.cpp | 61 duckdb-0.5.0/duckdb/src/duckdb/src/main/capi/appender-c.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/main/capi/arrow-c.cpp | 39 duckdb-0.5.0/duckdb/src/duckdb/src/main/capi/data_chunk-c.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/main/capi/pending-c.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/main/capi/prepared-c.cpp | 25 duckdb-0.5.0/duckdb/src/duckdb/src/main/capi/result-c.cpp | 325 duckdb-0.5.0/duckdb/src/duckdb/src/main/capi/table_function-c.cpp | 25 duckdb-0.5.0/duckdb/src/duckdb/src/main/capi/threading-c.cpp | 67 duckdb-0.5.0/duckdb/src/duckdb/src/main/client_context.cpp | 441 duckdb-0.5.0/duckdb/src/duckdb/src/main/client_verify.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/main/config.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/main/connection.cpp | 39 duckdb-0.5.0/duckdb/src/duckdb/src/main/database.cpp | 118 duckdb-0.5.0/duckdb/src/duckdb/src/main/extension/extension_helper.cpp | 314 duckdb-0.5.0/duckdb/src/duckdb/src/main/extension/extension_install.cpp | 64 duckdb-0.5.0/duckdb/src/duckdb/src/main/extension/extension_load.cpp | 49 duckdb-0.5.0/duckdb/src/duckdb/src/main/materialized_query_result.cpp | 74 duckdb-0.5.0/duckdb/src/duckdb/src/main/pending_query_result.cpp | 21 duckdb-0.5.0/duckdb/src/duckdb/src/main/prepared_statement.cpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/main/prepared_statement_data.cpp | 51 duckdb-0.5.0/duckdb/src/duckdb/src/main/query_profiler.cpp | 61 duckdb-0.5.0/duckdb/src/duckdb/src/main/query_result.cpp | 325 duckdb-0.5.0/duckdb/src/duckdb/src/main/relation.cpp | 22 duckdb-0.5.0/duckdb/src/duckdb/src/main/relation/distinct_relation.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/main/relation/filter_relation.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/main/relation/limit_relation.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/main/relation/order_relation.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/main/relation/setop_relation.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/main/relation/subquery_relation.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/main/settings/settings.cpp | 124 duckdb-0.5.0/duckdb/src/duckdb/src/main/stream_query_result.cpp | 42 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/cardinality_estimator.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/estimated_properties.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/expression_rewriter.cpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/in_clause_rewriter.cpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/join_node.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/join_order/query_graph.cpp | 9 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/join_order_optimizer.cpp | 315 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/optimizer.cpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/pullup/pullup_from_left.cpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_cross_product.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_get.cpp | 12 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_inner_join.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_left_join.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/remove_unused_columns.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/rule/comparison_simplification.cpp | 40 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/rule/date_part_simplification.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/statistics/operator/propagate_join.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/optimizer/statistics_propagator.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/parallel/executor.cpp | 222 duckdb-0.5.0/duckdb/src/duckdb/src/parallel/executor_task.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/parallel/pipeline.cpp | 28 duckdb-0.5.0/duckdb/src/duckdb/src/parallel/pipeline_executor.cpp | 17 duckdb-0.5.0/duckdb/src/duckdb/src/parallel/task_scheduler.cpp | 31 duckdb-0.5.0/duckdb/src/duckdb/src/parallel/thread_context.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/parser/column_definition.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/parser/expression/comparison_expression.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/parser/expression/constant_expression.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/parser/expression/lambda_expression.cpp | 20 duckdb-0.5.0/duckdb/src/duckdb/src/parser/expression/parameter_expression.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/parser/expression/window_expression.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/parser/parsed_data/alter_table_info.cpp | 207 duckdb-0.5.0/duckdb/src/duckdb/src/parser/parsed_data/create_index_info.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/parser/parsed_data/create_info.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/parser/parsed_data/create_table_info.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/parser/parsed_expression.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/parser/parsed_expression_iterator.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/parser/parser.cpp | 24 duckdb-0.5.0/duckdb/src/duckdb/src/parser/query_node.cpp | 47 duckdb-0.5.0/duckdb/src/duckdb/src/parser/query_node/select_node.cpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/parser/query_node/set_operation_node.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/parser/statement/delete_statement.cpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/parser/statement/extension_statement.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/parser/statement/insert_statement.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/parser/statement/update_statement.cpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/parser/statement/vacuum_statement.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/expression/transform_function.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/expression/transform_lambda.cpp | 9 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/expression/transform_operator.cpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/expression/transform_subquery.cpp | 59 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/helpers/transform_cte.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/helpers/transform_sample.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/helpers/transform_typename.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/statement/transform_alter_sequence.cpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/statement/transform_alter_table.cpp | 49 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/statement/transform_create_function.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/statement/transform_create_index.cpp | 11 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/statement/transform_create_sequence.cpp | 66 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/statement/transform_create_type.cpp | 11 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/statement/transform_delete.cpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/statement/transform_insert.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/statement/transform_rename.cpp | 11 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/statement/transform_select_node.cpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/statement/transform_update.cpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/statement/transform_vacuum.cpp | 51 duckdb-0.5.0/duckdb/src/duckdb/src/parser/transform/tableref/transform_subquery.cpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/planner/bind_context.cpp | 57 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder.cpp | 47 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/expression/bind_aggregate_expression.cpp | 20 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/expression/bind_between_expression.cpp | 1 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/expression/bind_cast_expression.cpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/expression/bind_collate_expression.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/expression/bind_columnref_expression.cpp | 65 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/expression/bind_comparison_expression.cpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/expression/bind_function_expression.cpp | 112 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/expression/bind_lambda.cpp | 179 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/expression/bind_macro_expression.cpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/expression/bind_operator_expression.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/expression/bind_parameter_expression.cpp | 29 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/expression/bind_unnest_expression.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/expression/bind_window_expression.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/query_node/bind_select_node.cpp | 24 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/query_node/bind_setop_node.cpp | 210 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/query_node/bind_table_macro_node.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_select_node.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_setop.cpp | 36 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/query_node/plan_subquery.cpp | 104 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/statement/bind_copy.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/statement/bind_create.cpp | 69 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/statement/bind_create_table.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/statement/bind_delete.cpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/statement/bind_execute.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/statement/bind_export.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/statement/bind_extension.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/statement/bind_insert.cpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/statement/bind_logical_plan.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/statement/bind_pragma.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/statement/bind_prepare.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/statement/bind_simple.cpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/statement/bind_update.cpp | 3 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/statement/bind_vacuum.cpp | 52 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/tableref/bind_table_function.cpp | 122 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/tableref/plan_crossproductref.cpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/planner/binder/tableref/plan_joinref.cpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/planner/bound_result_modifier.cpp | 19 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression.cpp | 72 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_aggregate_expression.cpp | 23 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_between_expression.cpp | 18 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_case_expression.cpp | 36 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_cast_expression.cpp | 75 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_columnref_expression.cpp | 20 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_comparison_expression.cpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_conjunction_expression.cpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_constant_expression.cpp | 14 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_default_expression.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_expression.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_function_expression.cpp | 27 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_lambda_expression.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_operator_expression.cpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_parameter_expression.cpp | 51 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_reference_expression.cpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_subquery_expression.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_unnest_expression.cpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression/bound_window_expression.cpp | 56 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression_binder.cpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression_binder/column_alias_binder.cpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression_binder/constant_binder.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression_binder/group_binder.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/planner/expression_binder/order_binder.cpp | 43 duckdb-0.5.0/duckdb/src/duckdb/src/planner/filter/conjunction_filter.cpp | 21 duckdb-0.5.0/duckdb/src/duckdb/src/planner/filter/constant_filter.cpp | 12 duckdb-0.5.0/duckdb/src/duckdb/src/planner/filter/null_filter.cpp | 14 duckdb-0.5.0/duckdb/src/duckdb/src/planner/joinside.cpp | 40 duckdb-0.5.0/duckdb/src/duckdb/src/planner/logical_operator.cpp | 242 duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_aggregate.cpp | 46 duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_any_join.cpp | 14 duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_column_data_get.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_comparison_join.cpp | 23 duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_copy_to_file.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_create.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_create_index.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_create_table.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_cross_product.cpp | 27 duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_cteref.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_delete.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_delim_get.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_delim_join.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_distinct.cpp | 11 duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_dummy_scan.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_empty_result.cpp | 18 duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_execute.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_explain.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_export.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_expression_get.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_filter.cpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_get.cpp | 84 duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_insert.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_join.cpp | 17 duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_limit.cpp | 15 duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_limit_percent.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_order.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_pragma.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_prepare.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_projection.cpp | 12 duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_recursive_cte.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_sample.cpp | 11 duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_set.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_set_operation.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_show.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_simple.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_top_n.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_unnest.cpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_update.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/operator/logical_window.cpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/planner/parsed_data |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/plan_serialization.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/planner/planner.cpp | 232 duckdb-0.5.0/duckdb/src/duckdb/src/planner/pragma_handler.cpp | 5 duckdb-0.5.0/duckdb/src/duckdb/src/planner/subquery/flatten_dependent_join.cpp | 150 duckdb-0.5.0/duckdb/src/duckdb/src/planner/table_binding.cpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/planner/table_filter.cpp | 61 duckdb-0.5.0/duckdb/src/duckdb/src/storage/arena_allocator.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/storage/buffer/buffer_handle.cpp | 47 duckdb-0.5.0/duckdb/src/duckdb/src/storage/buffer/managed_buffer.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/src/storage/buffer_manager.cpp | 532 duckdb-0.5.0/duckdb/src/duckdb/src/storage/checkpoint/table_data_reader.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/storage/checkpoint/table_data_writer.cpp | 9 duckdb-0.5.0/duckdb/src/duckdb/src/storage/checkpoint/write_overflow_strings_to_disk.cpp | 36 duckdb-0.5.0/duckdb/src/duckdb/src/storage/checkpoint_manager.cpp | 130 duckdb-0.5.0/duckdb/src/duckdb/src/storage/compression/bitpacking.cpp | 250 duckdb-0.5.0/duckdb/src/duckdb/src/storage/compression/dictionary_compression.cpp | 132 duckdb-0.5.0/duckdb/src/duckdb/src/storage/compression/fixed_size_uncompressed.cpp | 23 duckdb-0.5.0/duckdb/src/duckdb/src/storage/compression/numeric_constant.cpp | 45 duckdb-0.5.0/duckdb/src/duckdb/src/storage/compression/rle.cpp | 31 duckdb-0.5.0/duckdb/src/duckdb/src/storage/compression/string_uncompressed.cpp | 198 duckdb-0.5.0/duckdb/src/duckdb/src/storage/compression/validity_uncompressed.cpp | 21 duckdb-0.5.0/duckdb/src/duckdb/src/storage/data_table.cpp | 186 duckdb-0.5.0/duckdb/src/duckdb/src/storage/index.cpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/storage/local_storage.cpp | 35 duckdb-0.5.0/duckdb/src/duckdb/src/storage/meta_block_reader.cpp | 13 duckdb-0.5.0/duckdb/src/duckdb/src/storage/single_file_block_manager.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/storage/statistics/base_statistics.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/storage/statistics/distinct_statistics.cpp | 17 duckdb-0.5.0/duckdb/src/duckdb/src/storage/statistics/list_statistics.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/storage/statistics/numeric_statistics.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/storage/statistics/string_statistics.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/storage/statistics/validity_statistics.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/storage/storage_info.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/src/storage/storage_manager.cpp | 20 duckdb-0.5.0/duckdb/src/duckdb/src/storage/table/column_checkpoint_state.cpp | 9 duckdb-0.5.0/duckdb/src/duckdb/src/storage/table/column_data.cpp | 16 duckdb-0.5.0/duckdb/src/duckdb/src/storage/table/column_data_checkpointer.cpp | 26 duckdb-0.5.0/duckdb/src/duckdb/src/storage/table/column_segment.cpp | 7 duckdb-0.5.0/duckdb/src/duckdb/src/storage/table/list_column_data.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/storage/table/row_group.cpp | 17 duckdb-0.5.0/duckdb/src/duckdb/src/storage/table/standard_column_data.cpp | 9 duckdb-0.5.0/duckdb/src/duckdb/src/storage/table/struct_column_data.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/src/storage/table/update_segment.cpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/storage/table_index.cpp |only duckdb-0.5.0/duckdb/src/duckdb/src/storage/wal_replay.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/transaction/commit_state.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/src/transaction/transaction.cpp | 10 duckdb-0.5.0/duckdb/src/duckdb/src/transaction/undo_buffer.cpp | 69 duckdb-0.5.0/duckdb/src/duckdb/src/verification |only duckdb-0.5.0/duckdb/src/duckdb/third_party/httplib/httplib.hpp | 13 duckdb-0.5.0/duckdb/src/duckdb/third_party/hyperloglog/hyperloglog.cpp | 4 duckdb-0.5.0/duckdb/src/duckdb/third_party/hyperloglog/hyperloglog.hpp | 4 duckdb-0.5.0/duckdb/src/duckdb/third_party/jaro_winkler |only duckdb-0.5.0/duckdb/src/duckdb/third_party/libpg_query/include/nodes/parsenodes.hpp | 7 duckdb-0.5.0/duckdb/src/duckdb/third_party/libpg_query/include/parser/gram.hpp | 1892 duckdb-0.5.0/duckdb/src/duckdb/third_party/libpg_query/include/parser/kwlist.hpp | 12 duckdb-0.5.0/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp |31456 +++++----- duckdb-0.5.0/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_scan.cpp | 906 duckdb-0.5.0/duckdb/src/duckdb/third_party/mbedtls |only duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/TApplicationException.h | 6 duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/TBase.h | 6 duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/TLogging.h | 6 duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/TToString.h | 6 duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/Thrift.h | 6 duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TCompactProtocol.h | 4 duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TCompactProtocol.tcc | 6 duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TProtocol.h | 62 duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TProtocolException.h | 6 duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/protocol/TVirtualProtocol.h | 6 duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/transport/PlatformSocket.h | 6 duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/transport/TBufferTransports.h | 6 duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/transport/TTransport.h | 6 duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/transport/TTransportException.h | 6 duckdb-0.5.0/duckdb/src/duckdb/third_party/thrift/thrift/transport/TVirtualTransport.h | 6 duckdb-0.5.0/duckdb/src/duckdb/ub_src_common.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/ub_src_common_arrow.cpp |only duckdb-0.5.0/duckdb/src/duckdb/ub_src_common_types.cpp | 10 duckdb-0.5.0/duckdb/src/duckdb/ub_src_execution_index_art.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/ub_src_execution_operator_aggregate.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/ub_src_execution_operator_join.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/ub_src_execution_operator_scan.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/ub_src_execution_physical_plan.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/ub_src_function.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/ub_src_function_scalar_list.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/ub_src_function_scalar_map.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/ub_src_function_scalar_string.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/ub_src_function_scalar_struct.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/ub_src_function_table_system.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/ub_src_main.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/ub_src_main_capi.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/ub_src_optimizer.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/ub_src_parser_parsed_data.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/ub_src_parser_statement.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/ub_src_planner.cpp | 2 duckdb-0.5.0/duckdb/src/duckdb/ub_src_planner_binder_statement.cpp | 8 duckdb-0.5.0/duckdb/src/duckdb/ub_src_planner_expression.cpp | 6 duckdb-0.5.0/duckdb/src/duckdb/ub_src_planner_operator.cpp | 62 duckdb-0.5.0/duckdb/src/duckdb/ub_src_planner_parsed_data.cpp |only duckdb-0.5.0/duckdb/src/duckdb/ub_src_storage.cpp | 4 duckdb-0.5.0/duckdb/src/include/rapi.hpp | 7 duckdb-0.5.0/duckdb/src/include/typesr.hpp | 14 duckdb-0.5.0/duckdb/src/register.cpp | 44 duckdb-0.5.0/duckdb/src/relational.cpp | 14 duckdb-0.5.0/duckdb/src/scan.cpp | 46 duckdb-0.5.0/duckdb/src/statement.cpp | 204 duckdb-0.5.0/duckdb/src/types.cpp | 45 duckdb-0.5.0/duckdb/src/utils.cpp | 11 duckdb-0.5.0/duckdb/tests/testthat/_snaps/backend-dbplyr__duckdb_connection.md | 142 duckdb-0.5.0/duckdb/tests/testthat/_snaps/types.md |only duckdb-0.5.0/duckdb/tests/testthat/helper-DBItest.R |only duckdb-0.5.0/duckdb/tests/testthat/test-DBItest.R | 24 duckdb-0.5.0/duckdb/tests/testthat/test-dbQuoteIdentifier__duckdb_connection.R |only duckdb-0.5.0/duckdb/tests/testthat/test_arrow.R | 29 duckdb-0.5.0/duckdb/tests/testthat/test_backend-dbplyr__duckdb_connection.R | 220 duckdb-0.5.0/duckdb/tests/testthat/test_extensions.R | 44 duckdb-0.5.0/duckdb/tests/testthat/test_integer64.R |only duckdb-0.5.0/duckdb/tests/testthat/test_list.R | 4 duckdb-0.5.0/duckdb/tests/testthat/test_register.R | 4 duckdb-0.5.0/duckdb/tests/testthat/test_types.R |only 993 files changed, 38276 insertions(+), 27611 deletions(-)
Title: Reference-Based Multiple Imputation for Ordinal/Binary Response
Description: Reference-based multiple imputation of ordinal and binary responses under Bayesian
framework, as described in Wang and Liu (2022) <arXiv:2203.02771>. Methods for
missing-not-at-random include Jump-to-Reference (J2R), Copy Reference (CR), and Delta
Adjustment which can generate tipping point analysis.
Author: Ying Liu [aut],
Tony Wang [aut, cre]
Maintainer: Tony Wang <xwang@imedacs.com>
Diff between remiod versions 1.0.0 dated 2022-03-14 and 1.0.1 dated 2022-09-05
remiod-1.0.0/remiod/inst/doc/intro_remiod.R |only remiod-1.0.0/remiod/inst/doc/intro_remiod.Rmd |only remiod-1.0.0/remiod/inst/doc/intro_remiod.html |only remiod-1.0.0/remiod/vignettes/intro_remiod.Rmd |only remiod-1.0.1/remiod/DESCRIPTION | 15 remiod-1.0.1/remiod/MD5 | 100 +++--- remiod-1.0.1/remiod/NAMESPACE | 5 remiod-1.0.1/remiod/NEWS.md |only remiod-1.0.1/remiod/R/JAGSmodel_opm.R |only remiod-1.0.1/remiod/R/clm_MI_CR.R | 54 +-- remiod-1.0.1/remiod/R/clm_MI_J2R.R | 54 +-- remiod-1.0.1/remiod/R/clm_MI_delta.R | 55 +-- remiod-1.0.1/remiod/R/data.R | 19 + remiod-1.0.1/remiod/R/divide_matrices_custom.R | 19 + remiod-1.0.1/remiod/R/extract_MIdata.R | 7 remiod-1.0.1/remiod/R/get_MI_RB.R | 26 + remiod-1.0.1/remiod/R/get_model1_info.R |only remiod-1.0.1/remiod/R/get_modeltypes_custom.R | 2 remiod-1.0.1/remiod/R/get_subset.R |only remiod-1.0.1/remiod/R/glm_MI_CR.R | 14 remiod-1.0.1/remiod/R/glm_MI_J2R.R | 26 + remiod-1.0.1/remiod/R/glm_MI_delta.R | 14 remiod-1.0.1/remiod/R/list.models.R | 12 remiod-1.0.1/remiod/R/miAnalyze.R |only remiod-1.0.1/remiod/R/model_imp_custom.R | 32 +- remiod-1.0.1/remiod/R/opm_MI_CR.R |only remiod-1.0.1/remiod/R/opm_MI_J2R.R |only remiod-1.0.1/remiod/R/opm_MI_delta.R |only remiod-1.0.1/remiod/R/remiod.R | 37 +- remiod-1.0.1/remiod/R/tang_MI_RB.R | 60 +++ remiod-1.0.1/remiod/R/tang_seq_get_likelihood.R | 1 remiod-1.0.1/remiod/R/tang_seq_helper.R | 74 ++++ remiod-1.0.1/remiod/R/tang_seq_imp.R | 61 ++- remiod-1.0.1/remiod/R/tang_seq_updatebeta.R | 2 remiod-1.0.1/remiod/R/updateMI.R | 16 - remiod-1.0.1/remiod/R/utils.R | 381 ++++++++++++++++++++---- remiod-1.0.1/remiod/README.md | 46 ++ remiod-1.0.1/remiod/build/vignette.rds |binary remiod-1.0.1/remiod/data/antidep.rda |only remiod-1.0.1/remiod/inst/doc/ExampleBinary.html |only remiod-1.0.1/remiod/inst/doc/ExampleBinary.md |only remiod-1.0.1/remiod/inst/doc/ExampleGauss.html |only remiod-1.0.1/remiod/inst/doc/ExampleGauss.md |only remiod-1.0.1/remiod/inst/doc/introremiod.html |only remiod-1.0.1/remiod/inst/doc/introremiod.md |only remiod-1.0.1/remiod/man/antidep.Rd |only remiod-1.0.1/remiod/man/clm_MI_CR.Rd | 9 remiod-1.0.1/remiod/man/clm_MI_J2R.Rd | 9 remiod-1.0.1/remiod/man/clm_MI_delta.Rd | 13 remiod-1.0.1/remiod/man/extract_MIdata.Rd | 5 remiod-1.0.1/remiod/man/get_MI_RB.Rd | 7 remiod-1.0.1/remiod/man/get_subset.Rd |only remiod-1.0.1/remiod/man/miAnalyze.Rd |only remiod-1.0.1/remiod/man/opm_MI_CR.Rd |only remiod-1.0.1/remiod/man/opm_MI_J2R.Rd |only remiod-1.0.1/remiod/man/opm_MI_delta.Rd |only remiod-1.0.1/remiod/man/schizob.Rd | 2 remiod-1.0.1/remiod/man/schizow.Rd | 2 remiod-1.0.1/remiod/man/tang_MI_RB.Rd | 7 remiod-1.0.1/remiod/vignettes/ExampleBinary.md |only remiod-1.0.1/remiod/vignettes/ExampleGauss.md |only remiod-1.0.1/remiod/vignettes/introremiod.md |only remiod-1.0.1/remiod/vignettes/missing-1.png |only remiod-1.0.1/remiod/vignettes/missing-2.png |only remiod-1.0.1/remiod/vignettes/missing-3.png |only remiod-1.0.1/remiod/vignettes/probit_plot-1.png |only remiod-1.0.1/remiod/vignettes/probit_plot-2.png |only remiod-1.0.1/remiod/vignettes/trace-1.png |only 68 files changed, 888 insertions(+), 298 deletions(-)
Title: Stochastic Process Model for Analysis of Longitudinal and
Time-to-Event Outcomes
Description: Utilities to estimate parameters of the models with survival functions
induced by stochastic covariates. Miscellaneous functions for data preparation
and simulation are also provided. For more information, see:
(i)"Stochastic model for analysis of longitudinal data on aging and mortality"
by Yashin A. et al. (2007),
Mathematical Biosciences, 208(2), 538-551, <DOI:10.1016/j.mbs.2006.11.006>;
(ii) "Health decline, aging and mortality: how are they related?"
by Yashin A. et al. (2007),
Biogerontology 8(3), 291(302), <DOI:10.1007/s10522-006-9073-3>.
Author: I. Zhbannikov, Liang He, K. Arbeev, I. Akushevich, A. Yashin.
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Diff between stpm versions 1.7.11 dated 2022-05-31 and 1.7.12 dated 2022-09-05
DESCRIPTION | 10 - MD5 | 21 +- R/spm_time-dependent.R | 39 +++-- R/utils.R | 10 + build/vignette.rds |binary inst/NEWS | 2 inst/doc/stpm-vignette.R | 11 - inst/doc/stpm-vignette.Rmd | 11 - inst/doc/stpm-vignette.html | 342 +++++++++++++++++++++++--------------------- man/assign_to_global.Rd |only man/spm_time_dep.Rd | 2 vignettes/stpm-vignette.Rmd | 11 - 12 files changed, 257 insertions(+), 202 deletions(-)
Title: Multivariate Exploratory Data Analysis and Data Mining
Description: Exploratory data analysis methods to summarize, visualize and describe datasets. The main principal component methods are available, those with the largest potential in terms of applications: principal component analysis (PCA) when variables are quantitative, correspondence analysis (CA) and multiple correspondence analysis (MCA) when variables are categorical, Multiple Factor Analysis when variables are structured in groups, etc. and hierarchical cluster analysis. F. Husson, S. Le and J. Pages (2017).
Author: Francois Husson, Julie Josse, Sebastien Le, Jeremy Mazet
Maintainer: Francois Husson <francois.husson@agrocampus-ouest.fr>
Diff between FactoMineR versions 2.4 dated 2020-12-11 and 2.5 dated 2022-09-05
DESCRIPTION | 14 MD5 | 127 +- NAMESPACE | 14 R/AovSum.r | 1 R/CA.R | 24 R/DMFA.R | 88 - R/FAMD.R | 7 R/GPA.R | 1718 +++++++++++++-------------- R/HCPC.R | 65 - R/HMFA.R | 36 R/LinearModel.R |only R/MCA.R | 40 R/MFA.R | 44 R/PCA.R | 36 R/RegBest.r | 48 R/autoLab.R | 116 - R/catdes.r | 131 +- R/coeffRV.R | 50 R/condes.r | 202 +-- R/coord.ellipse.R | 4 R/descfreq.R | 44 R/dimdesc.r | 35 R/ellipseCA.R | 56 R/estim_ncp.r | 138 +- R/graph.var.R | 32 R/meansComp.R |only R/plot.CA.R | 45 R/plot.CaGalt.R | 36 R/plot.DMFA.R | 56 R/plot.FAMD.R | 6 R/plot.GPA.R | 4 R/plot.HCPC.R | 365 ++--- R/plot.HMFA.R | 6 R/plot.MCA.R | 52 R/plot.MFA.R | 2828 ++++++++++++++++++++++----------------------- R/plot.PCA.R | 68 - R/plot.catdes.R | 144 +- R/plot.meansComp.R |only R/plotGPApartial.R | 4 R/plotMFApartial.R | 6 R/plotellipses.r | 8 R/predict.FAMD.R | 2 R/predict.LinearModel.R |only R/predict.MCA.R | 4 R/predict.MFA.R | 6 R/prefpls.r | 6 R/print.LinearModel.R |only R/print.condes.R |only R/print.dimdesc.R |only R/reconst.R | 82 - R/summary.CA.r | 4 R/summary.CaGalt.R | 4 R/summary.FAMD.r | 4 R/summary.MCA.r | 4 R/summary.MFA.r | 4 R/summary.PCA.r | 4 R/svd.triplet.R | 6 R/tab.disjonctif.R | 95 + R/tab.disjonctif.prop.R | 79 + R/textual.r | 78 - R/zz.R |only man/LinearModel.Rd |only man/MFA.Rd | 2 man/PCA.Rd | 4 man/meansComp.Rd |only man/plot.PCA.Rd | 2 man/plot.meansComp.Rd |only man/predict.LinearModel.Rd |only man/print.LinearModel.Rd |only man/print.condes.Rd |only src |only 71 files changed, 3627 insertions(+), 3461 deletions(-)
Title: Misc Extensions for the 'SPOT' Package
Description: Implements additional models, simulation tools, and interfaces as extensions to 'SPOT'.
It provides tools for hyperparameter tuning via 'keras/tensorflow', interfacing 'mlr', for performing Markov chain simulations,
and for sensitivity analysis based on sequential bifurcation methods as described in Bettonvil and Kleijnen (1996).
Furthermore, additional plotting functions for output from 'SPOT' runs are implemented.
Bartz-Beielstein T, Lasarczyk C W G, Preuss M (2005) <doi:10.1109/CEC.2005.1554761>.
Bartz-Beielstein T, Zaefferer M, Rehbach F (2021) <arXiv:1712.04076>.
Bartz-Beielstein T, Rehbach F, Sen A, Zaefferer M <arXiv:2105.14625>.
Bettonvil, B, Kleijnen JPC (1996) <doi:10.1016/S0377-2217(96)00156-7>.
Author: Thomas Bartz-Beielstein [aut, cre]
,
Martin Zaefferer [aut] ,
Frederik Rehbach [aut]
Maintainer: Thomas Bartz-Beielstein <tbb@bartzundbartz.de>
Diff between SPOTMisc versions 1.19.50 dated 2022-08-19 and 1.19.52 dated 2022-09-05
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Title: Machine Learning Models and Tools
Description: Meta-package for statistical and machine learning with a unified
interface for model fitting, prediction, performance assessment, and
presentation of results. Approaches for model fitting and prediction of
numerical, categorical, or censored time-to-event outcomes include
traditional regression models, regularization methods, tree-based methods,
support vector machines, neural networks, ensembles, data preprocessing,
filtering, and model tuning and selection. Performance metrics are provided
for model assessment and can be estimated with independent test sets, split
sampling, cross-validation, or bootstrap resampling. Resample estimation
can be executed in parallel for faster processing and nested in cases of
model tuning and selection. Modeling results can be summarized with
descriptive statistics; calibration curves; variable importance; partial
dependence plots; confusion matrices; and ROC, lift, and other performance
curves.
Author: Brian J Smith [aut, cre]
Maintainer: Brian J Smith <brian-j-smith@uiowa.edu>
Diff between MachineShop versions 3.5.0 dated 2022-06-03 and 3.6.0 dated 2022-09-05
MachineShop-3.5.0/MachineShop/man/deprecated.Rd |only MachineShop-3.6.0/MachineShop/DESCRIPTION | 18 MachineShop-3.6.0/MachineShop/MD5 | 159 +- MachineShop-3.6.0/MachineShop/NAMESPACE | 6 MachineShop-3.6.0/MachineShop/NEWS.md | 9 MachineShop-3.6.0/MachineShop/R/MLModel.R | 19 MachineShop-3.6.0/MachineShop/R/ML_AdaBagModel.R | 7 MachineShop-3.6.0/MachineShop/R/ML_AdaBoostModel.R | 1 MachineShop-3.6.0/MachineShop/R/ML_BARTMachineModel.R | 7 MachineShop-3.6.0/MachineShop/R/ML_BARTModel.R | 12 MachineShop-3.6.0/MachineShop/R/ML_BlackBoostModel.R | 5 MachineShop-3.6.0/MachineShop/R/ML_C50Model.R | 1 MachineShop-3.6.0/MachineShop/R/ML_CForestModel.R | 7 MachineShop-3.6.0/MachineShop/R/ML_CoxModel.R | 13 MachineShop-3.6.0/MachineShop/R/ML_EarthModel.R | 1 MachineShop-3.6.0/MachineShop/R/ML_FDAModel.R | 6 MachineShop-3.6.0/MachineShop/R/ML_GAMBoostModel.R | 1 MachineShop-3.6.0/MachineShop/R/ML_GBMModel.R | 1 MachineShop-3.6.0/MachineShop/R/ML_GLMBoostModel.R | 1 MachineShop-3.6.0/MachineShop/R/ML_GLMModel.R | 31 MachineShop-3.6.0/MachineShop/R/ML_GLMNetModel.R | 7 MachineShop-3.6.0/MachineShop/R/ML_KNNModel.R | 11 MachineShop-3.6.0/MachineShop/R/ML_LARSModel.R | 1 MachineShop-3.6.0/MachineShop/R/ML_LDAModel.R | 5 MachineShop-3.6.0/MachineShop/R/ML_LMModel.R | 5 MachineShop-3.6.0/MachineShop/R/ML_MDAModel.R | 1 MachineShop-3.6.0/MachineShop/R/ML_NNetModel.R | 7 MachineShop-3.6.0/MachineShop/R/ML_NaiveBayesModel.R | 5 MachineShop-3.6.0/MachineShop/R/ML_PLSModel.R | 3 MachineShop-3.6.0/MachineShop/R/ML_POLRModel.R | 6 MachineShop-3.6.0/MachineShop/R/ML_QDAModel.R | 3 MachineShop-3.6.0/MachineShop/R/ML_RFSRCModel.R | 6 MachineShop-3.6.0/MachineShop/R/ML_RPartModel.R | 1 MachineShop-3.6.0/MachineShop/R/ML_RandomForestModel.R | 5 MachineShop-3.6.0/MachineShop/R/ML_RangerModel.R | 1 MachineShop-3.6.0/MachineShop/R/ML_SVMModel.R | 20 MachineShop-3.6.0/MachineShop/R/ML_SurvRegModel.R | 9 MachineShop-3.6.0/MachineShop/R/ML_TreeModel.R | 7 MachineShop-3.6.0/MachineShop/R/ML_XGBModel.R | 9 MachineShop-3.6.0/MachineShop/R/ModelFrame.R | 15 MachineShop-3.6.0/MachineShop/R/ModelSpecification.R | 23 MachineShop-3.6.0/MachineShop/R/TrainedInputs.R | 4 MachineShop-3.6.0/MachineShop/R/classes.R | 17 MachineShop-3.6.0/MachineShop/R/coerce.R | 45 MachineShop-3.6.0/MachineShop/R/combine.R | 1 MachineShop-3.6.0/MachineShop/R/conditions.R | 63 MachineShop-3.6.0/MachineShop/R/convert.R | 11 MachineShop-3.6.0/MachineShop/R/expand.R | 2 MachineShop-3.6.0/MachineShop/R/extract.R | 4 MachineShop-3.6.0/MachineShop/R/fit.R | 24 MachineShop-3.6.0/MachineShop/R/metricinfo.R | 2 MachineShop-3.6.0/MachineShop/R/modelinfo.R | 1 MachineShop-3.6.0/MachineShop/R/models.R | 1 MachineShop-3.6.0/MachineShop/R/predict.R | 28 MachineShop-3.6.0/MachineShop/R/print.R | 12 MachineShop-3.6.0/MachineShop/R/resample.R | 13 MachineShop-3.6.0/MachineShop/R/rfe.R | 13 MachineShop-3.6.0/MachineShop/R/survival.R | 46 MachineShop-3.6.0/MachineShop/R/utils.R | 11 MachineShop-3.6.0/MachineShop/README.md | 69 - MachineShop-3.6.0/MachineShop/build/vignette.rds |binary MachineShop-3.6.0/MachineShop/inst/doc/MLModels.html | 13 MachineShop-3.6.0/MachineShop/inst/doc/UserGuide.R | 108 - MachineShop-3.6.0/MachineShop/inst/doc/UserGuide.Rmd | 111 - MachineShop-3.6.0/MachineShop/inst/doc/UserGuide.html | 642 +++++----- MachineShop-3.6.0/MachineShop/man/MLModel.Rd | 8 MachineShop-3.6.0/MachineShop/man/ModelFrame-methods.Rd | 5 MachineShop-3.6.0/MachineShop/man/ModelSpecification-methods.Rd | 13 MachineShop-3.6.0/MachineShop/man/SVMModel.Rd | 5 MachineShop-3.6.0/MachineShop/man/as.MLModel.Rd | 2 MachineShop-3.6.0/MachineShop/man/as.data.frame.Rd |only MachineShop-3.6.0/MachineShop/man/combine-methods.Rd | 1 MachineShop-3.6.0/MachineShop/man/fit-methods.Rd | 15 MachineShop-3.6.0/MachineShop/man/inputs.Rd | 1 MachineShop-3.6.0/MachineShop/man/predict.Rd | 5 MachineShop-3.6.0/MachineShop/man/resample-methods.Rd | 13 MachineShop-3.6.0/MachineShop/man/rfe-methods.Rd | 13 MachineShop-3.6.0/MachineShop/tests/testthat/Rplots.pdf |binary MachineShop-3.6.0/MachineShop/tests/testthat/test-ML_ParsnipModel.R |only MachineShop-3.6.0/MachineShop/tests/testthat/test-survival.txt | 419 +++--- MachineShop-3.6.0/MachineShop/vignettes/UserGuide.Rmd | 111 - MachineShop-3.6.0/MachineShop/vignettes/img/using_strategies_tune_plot-1.png |binary 82 files changed, 1215 insertions(+), 1092 deletions(-)
Title: Exploratory Graph Analysis – a Framework for Estimating the
Number of Dimensions in Multivariate Data using Network
Psychometrics
Description: Implements the Exploratory Graph Analysis (EGA) framework for dimensionality and psychometric assessment. EGA is part of a new area called network psychometrics that uses undirected network models for the assessment of psychometric properties. EGA estimates the number of dimensions (or factors) using graphical lasso or Triangulated Maximally Filtered Graph (TMFG) and a weighted network community detection algorithm. A bootstrap method for verifying the stability of the dimensions and items in those dimensions is available. The fit of the structure suggested by EGA can be verified using Entropy Fit Indices. A novel approach called Unique Variable Analysis (UVA) can be used to identify and reduce redundant variables in multivariate data. Network loadings, which are roughly equivalent to factor loadings when the data generating model is a factor model, are available. Network scores can also be computed using the network loadings. Dynamic EGA (dynEGA) will estimate dimensions from time ser [...truncated...]
Author: Hudson Golino [aut, cre] ,
Alexander Christensen [aut] ,
Robert Moulder [ctb] ,
Luis E. Garrido [ctb] ,
Laura Jamison [ctb]
Maintainer: Hudson Golino <hfg9s@virginia.edu>
Diff between EGAnet versions 1.2.0 dated 2022-08-12 and 1.2.3 dated 2022-09-05
EGAnet-1.2.0/EGAnet/R/datasets.R |only EGAnet-1.2.3/EGAnet/DESCRIPTION | 8 EGAnet-1.2.3/EGAnet/MD5 | 164 +-- EGAnet-1.2.3/EGAnet/NAMESPACE | 1 EGAnet-1.2.3/EGAnet/NEWS | 16 EGAnet-1.2.3/EGAnet/R/CFA.R | 3 EGAnet-1.2.3/EGAnet/R/EBICglasso.qgraph.R | 11 EGAnet-1.2.3/EGAnet/R/EGA.R | 54 - EGAnet-1.2.3/EGAnet/R/EGA.estimate.R | 12 EGAnet-1.2.3/EGAnet/R/EGA.fit.R | 3 EGAnet-1.2.3/EGAnet/R/LCT.R | 8 EGAnet-1.2.3/EGAnet/R/UVA.R | 6 EGAnet-1.2.3/EGAnet/R/boot.ergoInfo.R | 84 + EGAnet-1.2.3/EGAnet/R/bootEGA.R | 279 +---- EGAnet-1.2.3/EGAnet/R/color_palette_EGA.R | 52 - EGAnet-1.2.3/EGAnet/R/compare.EGA.plots.R | 3 EGAnet-1.2.3/EGAnet/R/dimensionStability.R | 12 EGAnet-1.2.3/EGAnet/R/dynEGA.R | 303 ++++-- EGAnet-1.2.3/EGAnet/R/dynEGA.ind.pop.R | 49 - EGAnet-1.2.3/EGAnet/R/entropyFit.R | 8 EGAnet-1.2.3/EGAnet/R/ergoInfo.R | 25 EGAnet-1.2.3/EGAnet/R/glla.R | 2 EGAnet-1.2.3/EGAnet/R/hierEGA.R | 6 EGAnet-1.2.3/EGAnet/R/infoCluster.R | 285 +++-- EGAnet-1.2.3/EGAnet/R/invariance.R | 433 +++++++- EGAnet-1.2.3/EGAnet/R/itemStability.R | 79 - EGAnet-1.2.3/EGAnet/R/jsd.ergoInfo.R |only EGAnet-1.2.3/EGAnet/R/methods.R | 2 EGAnet-1.2.3/EGAnet/R/methods.section.R | 50 - EGAnet-1.2.3/EGAnet/R/net.loads.R | 6 EGAnet-1.2.3/EGAnet/R/net.scores.R | 6 EGAnet-1.2.3/EGAnet/R/network.descriptives.R | 7 EGAnet-1.2.3/EGAnet/R/plots.R | 2 EGAnet-1.2.3/EGAnet/R/residualEGA.R | 7 EGAnet-1.2.3/EGAnet/R/riEGA.R | 5 EGAnet-1.2.3/EGAnet/R/sim.dynEGA.R | 21 EGAnet-1.2.3/EGAnet/R/simDFM.R | 126 +- EGAnet-1.2.3/EGAnet/R/tefi.R | 4 EGAnet-1.2.3/EGAnet/R/totalCorMat.R | 4 EGAnet-1.2.3/EGAnet/R/toy.example.R |only EGAnet-1.2.3/EGAnet/R/utils-EGAnet.R | 531 +++++------ EGAnet-1.2.3/EGAnet/R/vn.entropy.R | 10 EGAnet-1.2.3/EGAnet/data/sim.dynEGA.RData |binary EGAnet-1.2.3/EGAnet/inst/doc/Exploratory_Graph_Analysis.html | 4 EGAnet-1.2.3/EGAnet/man/CFA.Rd | 3 EGAnet-1.2.3/EGAnet/man/EBICglasso.qgraph.Rd | 9 EGAnet-1.2.3/EGAnet/man/EGA.Rd | 17 EGAnet-1.2.3/EGAnet/man/EGA.estimate.Rd | 3 EGAnet-1.2.3/EGAnet/man/EGA.fit.Rd | 3 EGAnet-1.2.3/EGAnet/man/LCT.Rd | 8 EGAnet-1.2.3/EGAnet/man/UVA.Rd | 6 EGAnet-1.2.3/EGAnet/man/boot.ergoInfo.Rd | 19 EGAnet-1.2.3/EGAnet/man/boot.wmt.Rd | 14 EGAnet-1.2.3/EGAnet/man/bootEGA.Rd | 27 EGAnet-1.2.3/EGAnet/man/compare.EGA.plots.Rd | 3 EGAnet-1.2.3/EGAnet/man/depression.Rd | 11 EGAnet-1.2.3/EGAnet/man/dimensionStability.Rd | 12 EGAnet-1.2.3/EGAnet/man/dnn.weights.Rd | 14 EGAnet-1.2.3/EGAnet/man/dynEGA.Rd | 45 EGAnet-1.2.3/EGAnet/man/dynEGA.ind.pop.Rd | 41 EGAnet-1.2.3/EGAnet/man/ega.wmt.Rd | 16 EGAnet-1.2.3/EGAnet/man/entropyFit.Rd | 8 EGAnet-1.2.3/EGAnet/man/ergoInfo.Rd | 9 EGAnet-1.2.3/EGAnet/man/glla.Rd | 2 EGAnet-1.2.3/EGAnet/man/hierEGA.Rd | 6 EGAnet-1.2.3/EGAnet/man/infoCluster.Rd | 10 EGAnet-1.2.3/EGAnet/man/intelligenceBattery.Rd | 11 EGAnet-1.2.3/EGAnet/man/invariance.Rd | 148 ++- EGAnet-1.2.3/EGAnet/man/itemStability.Rd | 32 EGAnet-1.2.3/EGAnet/man/jsd.ergoInfo.Rd |only EGAnet-1.2.3/EGAnet/man/methods.section.Rd | 50 - EGAnet-1.2.3/EGAnet/man/net.loads.Rd | 6 EGAnet-1.2.3/EGAnet/man/net.scores.Rd | 6 EGAnet-1.2.3/EGAnet/man/network.descriptives.Rd | 7 EGAnet-1.2.3/EGAnet/man/optimism.Rd | 15 EGAnet-1.2.3/EGAnet/man/prime.num.Rd | 11 EGAnet-1.2.3/EGAnet/man/residualEGA.Rd | 7 EGAnet-1.2.3/EGAnet/man/riEGA.Rd | 5 EGAnet-1.2.3/EGAnet/man/sim.dynEGA.Rd | 28 EGAnet-1.2.3/EGAnet/man/simDFM.Rd | 15 EGAnet-1.2.3/EGAnet/man/tefi.Rd | 4 EGAnet-1.2.3/EGAnet/man/totalCorMat.Rd | 4 EGAnet-1.2.3/EGAnet/man/toy.example.Rd | 40 EGAnet-1.2.3/EGAnet/man/vn.entropy.Rd | 10 EGAnet-1.2.3/EGAnet/man/wmt2.Rd | 10 85 files changed, 2026 insertions(+), 1360 deletions(-)
Title: Process and Data Management - FAIR
Description: Tools, methods and processes for the management
of analysis workflows. These lightweight solutions facilitate
structuring R&D activities. These solutions were developed to comply with FAIR
principles as discussed by Jacobsen et al. (2017) <doi:10.1162/dint_r_00024>,
and with ALCOA+ principles as proposed by the U.S. FDA.
Author: Gregoire Thomas [aut, cre]
Maintainer: Gregoire Thomas <gregoire.thomas@SQU4RE.com>
Diff between D4TAlink.light versions 2.1.5 dated 2022-08-26 and 2.1.7 dated 2022-09-05
D4TAlink.light-2.1.5/D4TAlink.light/R/taskRmd.R |only D4TAlink.light-2.1.7/D4TAlink.light/DESCRIPTION | 15 +- D4TAlink.light-2.1.7/D4TAlink.light/MD5 | 42 +++-- D4TAlink.light-2.1.7/D4TAlink.light/NAMESPACE | 5 D4TAlink.light-2.1.7/D4TAlink.light/NEWS |only D4TAlink.light-2.1.7/D4TAlink.light/R/init.R | 3 D4TAlink.light-2.1.7/D4TAlink.light/R/taskFiles.R | 45 +++--- D4TAlink.light-2.1.7/D4TAlink.light/R/taskGlobals.R | 30 +++- D4TAlink.light-2.1.7/D4TAlink.light/R/taskPaths.R | 11 + D4TAlink.light-2.1.7/D4TAlink.light/R/taskRmarkdown.R |only D4TAlink.light-2.1.7/D4TAlink.light/R/taskRscript.R |only D4TAlink.light-2.1.7/D4TAlink.light/inst/doc/D4TAlink_basics.R | 46 +++--- D4TAlink.light-2.1.7/D4TAlink.light/inst/doc/D4TAlink_basics.Rmd | 71 +++++++--- D4TAlink.light-2.1.7/D4TAlink.light/inst/doc/D4TAlink_basics.html | 37 ++++- D4TAlink.light-2.1.7/D4TAlink.light/inst/template/SQU4REtemplate.Rmd |only D4TAlink.light-2.1.7/D4TAlink.light/inst/template/SQU4REtemplate.docx |only D4TAlink.light-2.1.7/D4TAlink.light/inst/template/template.R |only D4TAlink.light-2.1.7/D4TAlink.light/inst/template/template.Rmd | 34 +++- D4TAlink.light-2.1.7/D4TAlink.light/man/DTx.Rd |only D4TAlink.light-2.1.7/D4TAlink.light/man/formatTaskDocx.Rd |only D4TAlink.light-2.1.7/D4TAlink.light/man/getTaskRscriptTemplate.Rd |only D4TAlink.light-2.1.7/D4TAlink.light/man/initTaskRmd.Rd | 2 D4TAlink.light-2.1.7/D4TAlink.light/man/initTaskRscript.Rd |only D4TAlink.light-2.1.7/D4TAlink.light/man/renderTaskRmd.Rd | 2 D4TAlink.light-2.1.7/D4TAlink.light/man/setTaskRmdTemplate.Rd | 10 + D4TAlink.light-2.1.7/D4TAlink.light/man/setTaskRscriptTemplate.Rd |only D4TAlink.light-2.1.7/D4TAlink.light/tests/testthat/test01.R | 13 + D4TAlink.light-2.1.7/D4TAlink.light/vignettes/D4TAlink_basics.Rmd | 71 +++++++--- 28 files changed, 311 insertions(+), 126 deletions(-)
More information about D4TAlink.light at CRAN
Permanent link
Title: 'SAS' Linear Model
Description: This is a core implementation of 'SAS' procedures for linear models - GLM, REG, ANOVA, FREQ, and UNIVARIATE. Some R packages provide type II and type III SS. However, the results of nested and complex designs are often different from those of 'SAS.' Different results does not necessarily mean incorrectness. However, many wants the same results to SAS. This package aims to achieve that.
Reference: Littell RC, Stroup WW, Freund RJ (2002, ISBN:0-471-22174-0).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between sasLM versions 0.9.0 dated 2022-08-06 and 0.9.1 dated 2022-09-05
sasLM-0.9.0/sasLM/inst/doc/Report-Different-Simplest2207240918.pdf |only sasLM-0.9.0/sasLM/inst/doc/Report-NOT-OKs2207240918.pdf |only sasLM-0.9.0/sasLM/inst/doc/Validation-Report-GLM-2207240919.pdf |only sasLM-0.9.1/sasLM/DESCRIPTION | 6 sasLM-0.9.1/sasLM/MD5 | 74 +++++----- sasLM-0.9.1/sasLM/NAMESPACE | 2 sasLM-0.9.1/sasLM/R/Coll.R | 54 ++----- sasLM-0.9.1/sasLM/R/GLM.R | 16 +- sasLM-0.9.1/sasLM/R/ORcmh.R |only sasLM-0.9.1/sasLM/R/ORinv.R |only sasLM-0.9.1/sasLM/R/ORmn.R | 11 - sasLM-0.9.1/sasLM/R/ORmn1.R | 25 ++- sasLM-0.9.1/sasLM/R/QuartileRange.R | 2 sasLM-0.9.1/sasLM/R/RDinv.R |only sasLM-0.9.1/sasLM/R/RDmn.R | 4 sasLM-0.9.1/sasLM/R/RDmn1.R | 31 ++-- sasLM-0.9.1/sasLM/R/RRinv.R |only sasLM-0.9.1/sasLM/R/RRmn.R | 4 sasLM-0.9.1/sasLM/R/RRmn1.R | 17 +- sasLM-0.9.1/sasLM/R/ScoreCI.R | 2 sasLM-0.9.1/sasLM/R/UNIV.R | 2 sasLM-0.9.1/sasLM/R/lr.R | 2 sasLM-0.9.1/sasLM/R/pD.R | 7 sasLM-0.9.1/sasLM/R/pResD.R |only sasLM-0.9.1/sasLM/inst/NEWS.Rd | 13 + sasLM-0.9.1/sasLM/inst/doc/Report-Different-Simplest2208200942.pdf |only sasLM-0.9.1/sasLM/inst/doc/Report-NOT-OKs2208200943.pdf |only sasLM-0.9.1/sasLM/inst/doc/Validation-Report-GLM-2208200944.pdf |only sasLM-0.9.1/sasLM/inst/doc/sasLM-manual.pdf |binary sasLM-0.9.1/sasLM/man/Coll.Rd | 2 sasLM-0.9.1/sasLM/man/ORcmh.Rd |only sasLM-0.9.1/sasLM/man/ORinv.Rd |only sasLM-0.9.1/sasLM/man/ORmn.Rd | 11 - sasLM-0.9.1/sasLM/man/ORmn1.Rd | 6 sasLM-0.9.1/sasLM/man/QuartileRange.Rd | 4 sasLM-0.9.1/sasLM/man/RDinv.Rd |only sasLM-0.9.1/sasLM/man/RDmn.Rd | 9 - sasLM-0.9.1/sasLM/man/RDmn1.Rd | 4 sasLM-0.9.1/sasLM/man/RRinv.Rd |only sasLM-0.9.1/sasLM/man/RRmn.Rd | 11 - sasLM-0.9.1/sasLM/man/RRmn1.Rd | 6 sasLM-0.9.1/sasLM/man/ScoreCI.Rd | 6 sasLM-0.9.1/sasLM/man/UNIV.Rd | 2 sasLM-0.9.1/sasLM/man/lfit.Rd | 4 sasLM-0.9.1/sasLM/man/lr.Rd | 2 sasLM-0.9.1/sasLM/man/pResD.Rd |only 46 files changed, 187 insertions(+), 152 deletions(-)
Title: Fundamentos De Estadistica Descriptiva e Inferencial
Description: Este paquete pretende apoyar el proceso enseñanza-aprendizaje de estadística descriptiva e inferencial. Las funciones contenidas en el paquete 'estadistica' cubren los conceptos básicos estudiados en un curso introductorio. Muchos conceptos son ilustrados con gráficos dinámicos o web apps para facilitar su comprensión. This package aims to help the teaching-learning process of descriptive and inferential statistics. The functions contained in the package 'estadistica' cover the basic concepts studied in a statistics introductory course. Many concepts are illustrated with dynamic graphs or web apps to make the understanding easier. See: Esteban et al. (2005, ISBN: 9788497323741), Newbold et al.(2019, ISBN:9781292315034 ), Murgui et al. (2002, ISBN:9788484424673) .
Author: Vicente Coll-Serrano [aut, cre],
Rosario Martinez Verdu [aut],
Cristina Pardo Garcia [ctb]
Maintainer: Vicente Coll-Serrano <estadistic@uv.es>
Diff between estadistica versions 0.2.1 dated 2022-02-14 and 0.2.2 dated 2022-09-05
DESCRIPTION | 11 +- MD5 | 92 +++++++++++------------ NAMESPACE | 1 R/coeficiente.variacion.R | 16 ++-- R/correlacion.R | 99 +++++++++++++++++-------- R/covarianza.R | 117 ++++++++++++++++++++++++----- R/cuantiles.R | 11 ++ R/cuantiles.int.R | 3 R/data.sets.R | 8 -- R/descriptivos.R | 80 ++++++++++---------- R/desviacion.R | 18 +++- R/globals.R | 5 - R/ic.diferencia.proporciones.R | 20 +++-- R/ic.proporcion.R | 92 +++++++++++++++++------ R/matriz.correlacion.R | 10 +- R/matriz.covarianzas.R | 10 +- R/media.R | 18 +++- R/mediana.R | 14 ++- R/mediana.int.R | 2 R/medidas.forma.R | 67 ++++++++++------ R/moda.R | 114 ++++++++++++++++++---------- R/momento.central.R | 49 ++++++++---- R/regresion.simple.R | 134 ++++++++++++++++++++++----------- R/series.temporales.R | 17 ++-- R/tabla.bidimensional.R | 85 ++++++++++++++------- R/tabla.frecuencias.R | 21 +++-- R/unir.vectores.R |only R/varianza.R | 17 +++- data/salarios2018.rdata |binary man/coeficiente.variacion.Rd | 5 - man/correlacion.Rd | 9 +- man/covarianza.Rd | 12 +-- man/cuantiles.Rd | 150 +++++++++++++++++++------------------- man/desviacion.Rd | 2 man/ic.diferencia.proporciones.Rd | 112 ++++++++++++++-------------- man/ic.proporcion.Rd | 148 +++++++++++++++++++------------------ man/matriz.correlacion.Rd | 3 man/matriz.covar.Rd | 3 man/media.Rd | 138 +++++++++++++++++----------------- man/mediana.Rd | 126 +++++++++++++++---------------- man/moda.Rd | 3 man/momento.central.Rd | 3 man/regresion.simple.Rd | 4 - man/salarios2018.Rd | 8 -- man/tabla.bidimensional.Rd | 103 +++++++++++++------------- man/tabla.frecuencias.Rd | 97 +++++++++++------------- man/unir.vectores.Rd |only man/varianza.Rd | 2 48 files changed, 1193 insertions(+), 866 deletions(-)
Title: Diversity Dynamics using Fossil Sampling Data
Description: Functions to describe sampling and diversity dynamics of fossil occurrence datasets (e.g. from the Paleobiology Database). The package includes methods to calculate range- and occurrence-based metrics of taxonomic richness, extinction and origination rates, along with traditional sampling measures. A powerful subsampling tool is also included that implements frequently used sampling standardization methods in a multiple bin-framework. The plotting of time series and the occurrence data can be simplified by the functions incorporated in the package, as well as other calculations, such as environmental affinities and extinction selectivity testing. Details can be found in: Kocsis, A.T.; Reddin, C.J.; Alroy, J. and Kiessling, W. (2019) <doi:10.1101/423780>.
Author: Adam T. Kocsis, John Alroy, Carl J. Reddin, Wolfgang Kiessling
Maintainer: Adam T. Kocsis <adam.t.kocsis@gmail.com>
Diff between divDyn versions 0.8.1 dated 2021-03-02 and 0.8.2 dated 2022-09-05
DESCRIPTION | 16 ++++----- MD5 | 58 +++++++++++++++++++---------------- NAMESPACE | 78 +++++++++++++++++++++++++++++------------------- R/data.R | 43 ++++++++++++++++++++++---- R/diversityDynamics.r | 6 +-- R/inter.R |only R/modeltab.R | 81 +++++++++++++++++++++++++++++++++++++++++++++++--- R/plotting.R | 9 ++++- R/subsample.R | 40 +++++++++++++++++++++--- R/zzz.R | 10 +++++- README.md | 10 +++--- build/vignette.rds |binary data/corals.RData |binary data/keys.RData |binary data/stages.RData |binary data/stages2018.RData |only data/stratkeys.RData |binary data/tens.RData |binary inst/CITATION | 2 - inst/NEWS | 16 +++++++++ inst/doc/handout.Rmd | 8 ++-- inst/doc/handout.pdf |binary man/divDyn.Rd | 6 +-- man/keys.Rd | 4 +- man/matchtime.Rd |only man/modeltab.Rd | 28 +++++++++++++++-- man/stages.Rd | 8 ++-- man/stages2018.Rd |only man/stratkeys.Rd | 4 +- src/Engine.cpp | 26 ++++++++-------- src/RcppExports.cpp | 5 +++ vignettes/handout.Rmd | 8 ++-- 32 files changed, 338 insertions(+), 128 deletions(-)
Title: A Solver for 'ompr' that Uses the R Optimization Infrastructure
('ROI')
Description: A solver for 'ompr' based on the R Optimization Infrastructure ('ROI').
The package makes all solvers in 'ROI' available to solve 'ompr' models. Please see the
'ompr' website <https://dirkschumacher.github.io/ompr/> and package docs for more information
and examples on how to use it.
Author: Dirk Schumacher [aut, cre]
Maintainer: Dirk Schumacher <mail@dirk-schumacher.net>
Diff between ompr.roi versions 1.0.0 dated 2022-01-27 and 1.0.1 dated 2022-09-05
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/as-roi-model.R | 28 ++++++++++++++++------------ tests/testthat/test-solver-roi.R | 13 +++++++++++++ 5 files changed, 41 insertions(+), 20 deletions(-)
Title: Tipping Point Analyses
Description: The strength of evidence provided by epidemiological and observational
studies is inherently limited by the potential for unmeasured confounding.
We focus on three key quantities: the observed bound of the confidence
interval closest to the null, the relationship between an unmeasured
confounder and the outcome, for example a plausible residual effect
size for an unmeasured continuous or binary confounder, and the
relationship between an unmeasured confounder and the exposure,
for example a realistic mean difference or prevalence difference
for this hypothetical confounder between exposure groups. Building
on the methods put forth by Cornfield et al. (1959), Bross (1966),
Schlesselman (1978), Rosenbaum & Rubin (1983), Lin et al. (1998),
Lash et al. (2009), Rosenbaum (1986), Cinelli & Hazlett (2020),
VanderWeele & Ding (2017), and Ding & VanderWeele (2016),
we can use these quantities to assess how an unmeasured confounder
may tip our result to insignificance.
Author: Lucy D'Agostino McGowan [aut, cre]
Maintainer: Lucy D'Agostino McGowan <lucydagostino@gmail.com>
Diff between tipr versions 1.0.0 dated 2022-08-06 and 1.0.1 dated 2022-09-05
DESCRIPTION | 26 ++++++--- MD5 | 51 +++++++++---------- NEWS.md | 8 ++- R/adjust_coefficient.R | 108 ++++++++++++++++++++--------------------- R/e_value.R | 2 R/exdata_rr.R | 2 R/tip-helpers.R | 34 ++++++------ R/tip.R | 16 +++--- R/tip_with_binary.R | 16 +++--- inst |only man/adjust_coef_with_binary.Rd | 8 +-- man/adjust_hr.Rd | 4 - man/adjust_hr_with_binary.Rd | 12 ++-- man/adjust_or.Rd | 4 - man/adjust_or_with_binary.Rd | 12 ++-- man/adjust_rr.Rd | 6 +- man/adjust_rr_with_binary.Rd | 14 ++--- man/e_value.Rd | 2 man/exdata_rr.Rd | 2 man/tip.Rd | 4 - man/tip_hr.Rd | 4 - man/tip_hr_with_binary.Rd | 4 - man/tip_or.Rd | 4 - man/tip_or_with_binary.Rd | 4 - man/tip_rr.Rd | 4 - man/tip_rr_with_binary.Rd | 4 - man/tip_with_binary.Rd | 4 - 27 files changed, 186 insertions(+), 173 deletions(-)
Title: Tools to Match Corporate Lending Portfolios with Climate Data
Description: These tools implement in R a fundamental part of the software
'PACTA' (Paris Agreement Capital Transition Assessment), which is a
free tool that calculates the alignment between financial portfolios
and climate scenarios (<https://2degrees-investing.org/>). Financial
institutions use 'PACTA' to study how their capital allocation
decisions align with climate change mitigation goals. This package
matches data from corporate lending portfolios to asset level data
from market-intelligence databases (e.g. power plant capacities,
emission factors, etc.). This is the first step to assess if a
financial portfolio aligns with climate goals.
Author: Jackson Hoffart [aut, cre] ,
Mauro Lepore [aut, ctr] ,
Klaus Hagedorn [aut],
Florence Palandri [aut],
Evgeny Petrovsky [aut],
2 Degrees Investing Initiative [cph, fnd]
Maintainer: Jackson Hoffart <jackson.hoffart@gmail.com>
Diff between r2dii.match versions 0.1.0 dated 2022-05-05 and 0.1.1 dated 2022-09-05
DESCRIPTION | 8 +-- MD5 | 16 +++--- NEWS.md | 4 + README.md | 70 ++++++++++++++-------------- inst/WORDLIST | 4 - man/prioritize.Rd | 8 ++- man/r2dii.match-package.Rd | 2 tests/testthat/_snaps/match_name.md | 89 +++++++++++++++++++++++------------- tests/testthat/test-match_name.R | 12 ++-- 9 files changed, 123 insertions(+), 90 deletions(-)
Title: Kernel SHAP
Description: Multidimensional version of the iterative Kernel SHAP
algorithm described in Ian Covert and Su-In Lee (2021)
<http://proceedings.mlr.press/v130/covert21a>. SHAP values are
calculated iteratively until convergence, along with approximate
standard errors. The package allows to work with any model that
provides numeric predictions of dimension one or higher. Examples
include linear regression, logistic regression (logit or probability
scale), other generalized linear models, generalized additive models,
and neural networks. The package plays well together with
meta-learning packages like 'tidymodels', 'caret' or 'mlr3'.
Visualizations can be done using the R package 'shapviz'.
Author: Michael Mayer [aut, cre],
David Watson [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between kernelshap versions 0.1.0 dated 2022-08-12 and 0.2.0 dated 2022-09-05
kernelshap-0.1.0/kernelshap/man/extractors.Rd |only kernelshap-0.2.0/kernelshap/DESCRIPTION | 46 kernelshap-0.2.0/kernelshap/MD5 | 31 kernelshap-0.2.0/kernelshap/NAMESPACE | 35 kernelshap-0.2.0/kernelshap/NEWS.md | 38 kernelshap-0.2.0/kernelshap/R/data.R |only kernelshap-0.2.0/kernelshap/R/kernelshap.R | 466 ++++------ kernelshap-0.2.0/kernelshap/R/methods.R | 186 +-- kernelshap-0.2.0/kernelshap/R/utils.R |only kernelshap-0.2.0/kernelshap/README.md | 255 +++-- kernelshap-0.2.0/kernelshap/data |only kernelshap-0.2.0/kernelshap/man/Z_exact.Rd |only kernelshap-0.2.0/kernelshap/man/figures/logo.png |binary kernelshap-0.2.0/kernelshap/man/is.kernelshap.Rd | 48 - kernelshap-0.2.0/kernelshap/man/kernelshap.Rd | 298 ++++-- kernelshap-0.2.0/kernelshap/man/ks_extract.Rd |only kernelshap-0.2.0/kernelshap/man/print.kernelshap.Rd | 62 - kernelshap-0.2.0/kernelshap/tests/testthat/test-kernelshap-multioutput.R |only kernelshap-0.2.0/kernelshap/tests/testthat/test-kernelshap.R | 70 - kernelshap-0.2.0/kernelshap/tests/testthat/test-methods.R | 28 20 files changed, 866 insertions(+), 697 deletions(-)
Title: Privacy Preserving Record Linkage
Description: A toolbox for deterministic, probabilistic and privacy-preserving record linkage techniques. Combines the functionality of the 'Merge ToolBox' (<https://www.record-linkage.de>) with current privacy-preserving techniques.
Author: Rainer Schnell [aut, cph],
Dorothea Rukasz [aut, cre],
Christian Borgs [ctb],
Stefan Brumme [ctb] ,
William B. Brogden [ctb] ,
Tim O'Brien [ctb] ,
Stephen Lacy [ctb] ,
Apache Software Foundation [cph]
Maintainer: Dorothea Rukasz <mitarbeiter.schnell@uni-due.de>
Diff between PPRL versions 0.3.6 dated 2021-02-11 and 0.3.7 dated 2022-09-05
DESCRIPTION | 13 +- MD5 | 14 +-- R/Linkage.R | 6 - R/RcppExports.R | 210 ++++++++++++++++++++++++------------------------ src/FunctionWrapper.cpp | 1 src/Makevars | 2 src/Makevars.win | 1 src/RcppExports.cpp | 5 + 8 files changed, 128 insertions(+), 124 deletions(-)
Title: Analysis of Multivariate Event Times
Description: Implementation of various statistical models for multivariate
event history data <doi:10.1007/s10985-013-9244-x>. Including multivariate
cumulative incidence models <doi:10.1002/sim.6016>, and bivariate random
effects probit models (Liability models) <doi:10.1016/j.csda.2015.01.014>.
Also contains two-stage binomial modelling that can do pairwise odds-ratio
dependence modelling based marginal logistic regression models. This is an
alternative to the alternating logistic regression approach (ALR).
Author: Klaus K. Holst [aut, cre],
Thomas Scheike [aut]
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between mets versions 1.2.9 dated 2021-09-06 and 1.3.0 dated 2022-09-05
mets-1.2.9/mets/vignettes/binomial-case-control-ascertainment.org |only mets-1.3.0/mets/DESCRIPTION | 10 mets-1.3.0/mets/MD5 | 199 mets-1.3.0/mets/NAMESPACE | 23 mets-1.3.0/mets/NEWS.md | 9 mets-1.3.0/mets/R/Event.Split.R |only mets-1.3.0/mets/R/binomial.regression.R | 937 +++- mets-1.3.0/mets/R/binomial.twostage.R | 33 mets-1.3.0/mets/R/bptwin.R | 23 mets-1.3.0/mets/R/casewise.R | 15 mets-1.3.0/mets/R/cifreg.R | 233 - mets-1.3.0/mets/R/cor.R | 49 mets-1.3.0/mets/R/discrete-survival-haplo.R | 88 mets-1.3.0/mets/R/doubleFGR.R | 44 mets-1.3.0/mets/R/dsort.R | 8 mets-1.3.0/mets/R/dutils.R | 93 mets-1.3.0/mets/R/efficient-binreg.R |only mets-1.3.0/mets/R/gof-phreg.R | 75 mets-1.3.0/mets/R/mediator-survival.R |only mets-1.3.0/mets/R/mutinomialreg.R | 130 mets-1.3.0/mets/R/phreg.R | 799 ++- mets-1.3.0/mets/R/recreg.R | 284 - mets-1.3.0/mets/R/recurrent.marginal.R | 1048 ++-- mets-1.3.0/mets/R/restricted.mean.R |only mets-1.3.0/mets/R/sim.clayton.oakes.R | 84 mets-1.3.0/mets/R/twostage.R | 849 --- mets-1.3.0/mets/R/wild-phreg.R | 10 mets-1.3.0/mets/build/vignette.rds |binary mets-1.3.0/mets/inst/doc/basic-dutils.html | 410 + mets-1.3.0/mets/inst/doc/binomial-family.R | 2 mets-1.3.0/mets/inst/doc/binomial-family.Rmd | 2 mets-1.3.0/mets/inst/doc/binomial-family.html | 632 ++ mets-1.3.0/mets/inst/doc/binomial-twin.html | 604 ++ mets-1.3.0/mets/inst/doc/binreg-ate.R | 26 mets-1.3.0/mets/inst/doc/binreg-ate.Rmd | 51 mets-1.3.0/mets/inst/doc/binreg-ate.html | 853 ++- mets-1.3.0/mets/inst/doc/binreg.html | 431 + mets-1.3.0/mets/inst/doc/cifreg.R | 45 mets-1.3.0/mets/inst/doc/cifreg.Rmd | 55 mets-1.3.0/mets/inst/doc/cifreg.html | 875 ++- mets-1.3.0/mets/inst/doc/haplo-discrete-ttp.Rmd | 9 mets-1.3.0/mets/inst/doc/haplo-discrete-ttp.html | 396 + mets-1.3.0/mets/inst/doc/interval-discrete-survival.R | 56 mets-1.3.0/mets/inst/doc/interval-discrete-survival.Rmd | 83 mets-1.3.0/mets/inst/doc/interval-discrete-survival.html | 496 +- mets-1.3.0/mets/inst/doc/marginal-cox.html | 496 +- mets-1.3.0/mets/inst/doc/mediation-survival.R |only mets-1.3.0/mets/inst/doc/mediation-survival.Rmd |only mets-1.3.0/mets/inst/doc/mediation-survival.html |only mets-1.3.0/mets/inst/doc/quantitative-twin.R | 51 mets-1.3.0/mets/inst/doc/quantitative-twin.Rmd | 80 mets-1.3.0/mets/inst/doc/quantitative-twin.html | 764 +-- mets-1.3.0/mets/inst/doc/recurrent-events.R | 251 - mets-1.3.0/mets/inst/doc/recurrent-events.Rmd | 130 mets-1.3.0/mets/inst/doc/recurrent-events.html | 1134 +++-- mets-1.3.0/mets/inst/doc/time-to-event-family-studies-arev.R | 347 + mets-1.3.0/mets/inst/doc/time-to-event-family-studies-arev.Rmd | 214 mets-1.3.0/mets/inst/doc/time-to-event-family-studies-arev.html | 2197 +++++----- mets-1.3.0/mets/inst/doc/twostage-survival.R | 11 mets-1.3.0/mets/inst/doc/twostage-survival.Rmd | 13 mets-1.3.0/mets/inst/doc/twostage-survival.html | 1263 +++-- mets-1.3.0/mets/man/Effbinreg.Rd |only mets-1.3.0/mets/man/EventSplit.Rd |only mets-1.3.0/mets/man/aalenMets.Rd |only mets-1.3.0/mets/man/basehazplot.phreg.Rd | 9 mets-1.3.0/mets/man/binreg.Rd | 3 mets-1.3.0/mets/man/binregATE.Rd | 20 mets-1.3.0/mets/man/binregCasewise.Rd | 1 mets-1.3.0/mets/man/covarianceRecurrent.Rd | 2 mets-1.3.0/mets/man/doubleFGR.Rd | 8 mets-1.3.0/mets/man/gofG.phreg.Rd | 6 mets-1.3.0/mets/man/mediatorSurv.Rd |only mets-1.3.0/mets/man/medweight.Rd |only mets-1.3.0/mets/man/mlogit.Rd | 6 mets-1.3.0/mets/man/prob.exceed.recurrent.Rd | 4 mets-1.3.0/mets/man/recreg.Rd | 34 mets-1.3.0/mets/man/recurrentMarginal.Rd | 1 mets-1.3.0/mets/man/resmean.phreg.Rd |only mets-1.3.0/mets/man/resmeanIPCW.Rd |only mets-1.3.0/mets/man/simMultistate.Rd | 11 mets-1.3.0/mets/man/simRecurrent.Rd | 20 mets-1.3.0/mets/man/simRecurrentTS.Rd | 9 mets-1.3.0/mets/src/aalenfrailty.cpp | 51 mets-1.3.0/mets/src/biprobit.cpp | 4 mets-1.3.0/mets/src/cor.cpp | 8 mets-1.3.0/mets/src/fastcox.cpp | 485 -- mets-1.3.0/mets/src/init.c | 7 mets-1.3.0/mets/src/tools.cpp | 8 mets-1.3.0/mets/tests/testthat/test_dutils.R | 19 mets-1.3.0/mets/tests/testthat/test_iid.R |only mets-1.3.0/mets/vignettes/binomial-family.Rmd | 2 mets-1.3.0/mets/vignettes/binreg-ate.Rmd | 51 mets-1.3.0/mets/vignettes/cifreg.Rmd | 55 mets-1.3.0/mets/vignettes/data |only mets-1.3.0/mets/vignettes/haplo-discrete-ttp.Rmd | 9 mets-1.3.0/mets/vignettes/interval-discrete-survival.Rmd | 83 mets-1.3.0/mets/vignettes/mediation-survival.Rmd |only mets-1.3.0/mets/vignettes/quantitative-twin.Rmd | 80 mets-1.3.0/mets/vignettes/recurrent-events.Rmd | 130 mets-1.3.0/mets/vignettes/time-to-event-family-studies-arev.Rmd | 214 mets-1.3.0/mets/vignettes/twostage-survival.Rmd | 13 101 files changed, 11059 insertions(+), 7314 deletions(-)
Title: Conventional and Fuzzy Data Envelopment Analysis
Description: Set of functions for Data Envelopment Analysis. It runs both classic and fuzzy DEA models.See: Banker, R.; Charnes, A.; Cooper, W.W. (1984). <doi:10.1287/mnsc.30.9.1078>, Charnes, A.; Cooper, W.W.; Rhodes, E. (1978). <doi:10.1016/0377-2217(78)90138-8> and Charnes, A.; Cooper, W.W.; Rhodes, E. (1981). <doi:10.1287/mnsc.27.6.668>.
Author: Vicente Coll-Serrano, Vicente Bolos, Rafael Benitez Suarez <rabesua@uv.es>
Maintainer: Vicente Bolos <vicente.bolos@uv.es>
Diff between deaR versions 1.2.5 dated 2022-01-13 and 1.2.6 dated 2022-09-05
deaR-1.2.5/deaR/R/plot.deafuzzy.R |only deaR-1.2.6/deaR/DESCRIPTION | 10 deaR-1.2.6/deaR/MD5 | 56 +-- deaR-1.2.6/deaR/NAMESPACE | 4 deaR-1.2.6/deaR/R/bootstrap_basic.R | 6 deaR-1.2.6/deaR/R/cross_efficiency.R | 3 deaR-1.2.6/deaR/R/cross_efficiency_fuzzy.R | 4 deaR-1.2.6/deaR/R/data_sets.R | 56 +++ deaR-1.2.6/deaR/R/efficiencies.R | 9 deaR-1.2.6/deaR/R/efficiencies.dea.R | 5 deaR-1.2.6/deaR/R/efficiencies.dea_fuzzy.R | 5 deaR-1.2.6/deaR/R/malmquist_index.R | 4 deaR-1.2.6/deaR/R/model_additive.R | 2 deaR-1.2.6/deaR/R/model_nonradial.R | 2 deaR-1.2.6/deaR/R/model_rdm.R | 10 deaR-1.2.6/deaR/R/modelfuzzy_guotanaka.R | 4 deaR-1.2.6/deaR/R/modelfuzzy_possibilistic.R | 446 +++++++++++++------------- deaR-1.2.6/deaR/R/plot.dea_fuzzy.R |only deaR-1.2.6/deaR/build/partial.rdb |binary deaR-1.2.6/deaR/data/FuzzyExample.RData |only deaR-1.2.6/deaR/man/FuzzyExample.Rd |only deaR-1.2.6/deaR/man/bootstrap_basic.Rd | 4 deaR-1.2.6/deaR/man/cross_efficiency.Rd | 2 deaR-1.2.6/deaR/man/cross_efficiency_fuzzy.Rd | 2 deaR-1.2.6/deaR/man/efficiencies.Rd | 5 deaR-1.2.6/deaR/man/efficiencies.dea.Rd | 3 deaR-1.2.6/deaR/man/efficiencies.dea_fuzzy.Rd | 3 deaR-1.2.6/deaR/man/malmquist_index.Rd | 4 deaR-1.2.6/deaR/man/model_additive.Rd | 2 deaR-1.2.6/deaR/man/model_nonradial.Rd | 2 deaR-1.2.6/deaR/man/plot.dea_fuzzy.Rd | 2 31 files changed, 364 insertions(+), 291 deletions(-)
Title: ADaM in R Asset Library
Description: A toolbox for programming Clinical Data Standards Interchange Consortium
(CDISC) compliant Analysis Data Model (ADaM) datasets in R. ADaM datasets are a
mandatory part of any New Drug or Biologics License Application submitted to the
United States Food and Drug Administration (FDA). Analysis derivations are
implemented in accordance with the "Analysis Data Model Implementation Guide"
(CDISC Analysis Data Model Team, 2021, <https://www.cdisc.org/standards/foundational/adam/adamig-v1-3-release-package>).
Author: Thomas Neitmann [aut, cre],
Stefan Bundfuss [aut],
Ben Straub [aut],
Samia Kabi [aut],
Gordon Miller [aut],
Teckla Akinyi [aut],
Andrew Smith [aut],
Konstantina Koukourikou [aut],
Ross Farrugia [aut],
Eric Simms [aut],
Annie Yang [aut],
Robin Koeger [...truncated...]
Maintainer: Thomas Neitmann <thomas.neitmann@roche.com>
Diff between admiral versions 0.7.1 dated 2022-07-18 and 0.8.0 dated 2022-09-05
admiral-0.7.1/admiral/R/assertthat_checks.R |only admiral-0.7.1/admiral/R/compat_friendly_type.R |only admiral-0.7.1/admiral/R/dataset_vignette.R |only admiral-0.7.1/admiral/R/derive_derived_param.R |only admiral-0.7.1/admiral/R/derive_last_dose.R |only admiral-0.7.1/admiral/R/derive_var_disposition_dt.R |only admiral-0.7.1/admiral/R/derive_var_trtedtm.R |only admiral-0.7.1/admiral/R/derive_var_trtsdtm.R |only admiral-0.7.1/admiral/R/dev_utils.R |only admiral-0.7.1/admiral/R/joins.R |only admiral-0.7.1/admiral/R/test_helpers.R |only admiral-0.7.1/admiral/R/warnings.R |only admiral-0.7.1/admiral/data/admiral_adae.rda |only admiral-0.7.1/admiral/data/admiral_adcm.rda |only admiral-0.7.1/admiral/data/admiral_adeg.rda |only admiral-0.7.1/admiral/data/admiral_adex.rda |only admiral-0.7.1/admiral/data/admiral_adpp.rda |only admiral-0.7.1/admiral/data/admiral_advs.rda |only admiral-0.7.1/admiral/data/datalist |only admiral-0.7.1/admiral/man/admiral_adae.Rd |only admiral-0.7.1/admiral/man/admiral_adcm.Rd |only admiral-0.7.1/admiral/man/admiral_adeg.Rd |only admiral-0.7.1/admiral/man/admiral_adex.Rd |only admiral-0.7.1/admiral/man/admiral_adpp.Rd |only admiral-0.7.1/admiral/man/admiral_advs.Rd |only admiral-0.7.1/admiral/man/assert_character_scalar.Rd |only admiral-0.7.1/admiral/man/assert_character_vector.Rd |only admiral-0.7.1/admiral/man/assert_data_frame.Rd |only admiral-0.7.1/admiral/man/assert_filter_cond.Rd |only admiral-0.7.1/admiral/man/assert_function.Rd |only admiral-0.7.1/admiral/man/assert_has_variables.Rd |only admiral-0.7.1/admiral/man/assert_integer_scalar.Rd |only admiral-0.7.1/admiral/man/assert_list_element.Rd |only admiral-0.7.1/admiral/man/assert_list_of.Rd |only admiral-0.7.1/admiral/man/assert_logical_scalar.Rd |only admiral-0.7.1/admiral/man/assert_numeric_vector.Rd |only admiral-0.7.1/admiral/man/assert_one_to_one.Rd |only admiral-0.7.1/admiral/man/assert_order_vars.Rd |only 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admiral-0.8.0/admiral/R/derive_date_vars.R | 1128 ++++++-- admiral-0.8.0/admiral/R/derive_extreme_records.R | 3 admiral-0.8.0/admiral/R/derive_merged.R | 304 +- admiral-0.8.0/admiral/R/derive_param_computed.R |only admiral-0.8.0/admiral/R/derive_param_doseint.R | 8 admiral-0.8.0/admiral/R/derive_param_exist_flag.R | 30 admiral-0.8.0/admiral/R/derive_param_exposure.R | 41 admiral-0.8.0/admiral/R/derive_param_first_event.R | 3 admiral-0.8.0/admiral/R/derive_param_framingham.R |only admiral-0.8.0/admiral/R/derive_param_tte.R | 159 - admiral-0.8.0/admiral/R/derive_param_wbc_abs.R | 5 admiral-0.8.0/admiral/R/derive_summary_records.R | 27 admiral-0.8.0/admiral/R/derive_var_ady.R | 13 admiral-0.8.0/admiral/R/derive_var_aendy.R | 15 admiral-0.8.0/admiral/R/derive_var_analysis_ratio.R | 3 admiral-0.8.0/admiral/R/derive_var_anrind.R | 3 admiral-0.8.0/admiral/R/derive_var_astdy.R | 13 admiral-0.8.0/admiral/R/derive_var_atirel.R | 29 admiral-0.8.0/admiral/R/derive_var_atoxgr.R |only admiral-0.8.0/admiral/R/derive_var_base.R | 4 admiral-0.8.0/admiral/R/derive_var_basetype.R | 4 admiral-0.8.0/admiral/R/derive_var_chg.R | 7 admiral-0.8.0/admiral/R/derive_var_confirmation_flag.R |only admiral-0.8.0/admiral/R/derive_var_disposition_status.R | 40 admiral-0.8.0/admiral/R/derive_var_dthcaus.R | 105 admiral-0.8.0/admiral/R/derive_var_extreme_date.R | 286 -- admiral-0.8.0/admiral/R/derive_var_extreme_flag.R | 61 admiral-0.8.0/admiral/R/derive_var_last_dose_amt.R | 46 admiral-0.8.0/admiral/R/derive_var_last_dose_date.R | 30 admiral-0.8.0/admiral/R/derive_var_last_dose_grp.R | 30 admiral-0.8.0/admiral/R/derive_var_obs_number.R | 3 admiral-0.8.0/admiral/R/derive_var_ontrtfl.R | 3 admiral-0.8.0/admiral/R/derive_var_pchg.R | 3 admiral-0.8.0/admiral/R/derive_var_shift.R | 3 admiral-0.8.0/admiral/R/derive_var_trtdurd.R | 4 admiral-0.8.0/admiral/R/derive_vars_aage.R | 83 admiral-0.8.0/admiral/R/derive_vars_disposition_reason.R | 8 admiral-0.8.0/admiral/R/derive_vars_dtm_to_dt.R | 4 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admiral-0.8.0/admiral/man/derive_param_bmi.Rd | 21 admiral-0.8.0/admiral/man/derive_param_bsa.Rd | 21 admiral-0.8.0/admiral/man/derive_param_computed.Rd |only admiral-0.8.0/admiral/man/derive_param_doseint.Rd | 21 admiral-0.8.0/admiral/man/derive_param_exist_flag.Rd | 21 admiral-0.8.0/admiral/man/derive_param_exposure.Rd | 22 admiral-0.8.0/admiral/man/derive_param_first_event.Rd | 21 admiral-0.8.0/admiral/man/derive_param_framingham.Rd |only admiral-0.8.0/admiral/man/derive_param_map.Rd | 21 admiral-0.8.0/admiral/man/derive_param_qtc.Rd | 20 admiral-0.8.0/admiral/man/derive_param_rr.Rd | 21 admiral-0.8.0/admiral/man/derive_param_tte.Rd | 29 admiral-0.8.0/admiral/man/derive_param_wbc_abs.Rd | 22 admiral-0.8.0/admiral/man/derive_summary_records.Rd | 23 admiral-0.8.0/admiral/man/derive_var_ady.Rd | 4 admiral-0.8.0/admiral/man/derive_var_aendy.Rd | 10 admiral-0.8.0/admiral/man/derive_var_age_years.Rd | 11 admiral-0.8.0/admiral/man/derive_var_agegr_fda.Rd | 64 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admiral-0.8.0/admiral/man/filter_extreme.Rd | 12 admiral-0.8.0/admiral/man/filter_relative.Rd | 12 admiral-0.8.0/admiral/man/format.sdg_select.Rd | 25 admiral-0.8.0/admiral/man/format.smq_select.Rd | 25 admiral-0.8.0/admiral/man/format_eoxxstt_default.Rd | 14 admiral-0.8.0/admiral/man/format_reason_default.Rd | 10 admiral-0.8.0/admiral/man/get_duplicates_dataset.Rd | 9 admiral-0.8.0/admiral/man/get_imputation_target_date.Rd |only admiral-0.8.0/admiral/man/get_imputation_target_time.Rd |only admiral-0.8.0/admiral/man/get_many_to_one_dataset.Rd | 9 admiral-0.8.0/admiral/man/get_not_mapped.Rd |only admiral-0.8.0/admiral/man/get_one_to_many_dataset.Rd | 9 admiral-0.8.0/admiral/man/get_partialdatetime.Rd |only admiral-0.8.0/admiral/man/get_summary_records.Rd |only admiral-0.8.0/admiral/man/get_terms_from_db.Rd | 9 admiral-0.8.0/admiral/man/impute_dtc_dt.Rd |only admiral-0.8.0/admiral/man/impute_dtc_dtm.Rd |only admiral-0.8.0/admiral/man/list_all_templates.Rd | 12 admiral-0.8.0/admiral/man/list_tte_source_objects.Rd |only admiral-0.8.0/admiral/man/max_cond.Rd |only admiral-0.8.0/admiral/man/min_cond.Rd |only admiral-0.8.0/admiral/man/params.Rd | 23 admiral-0.8.0/admiral/man/print.adam_templates.Rd |only admiral-0.8.0/admiral/man/print.derivation_slice.Rd | 8 admiral-0.8.0/admiral/man/print.tte_source.Rd | 9 admiral-0.8.0/admiral/man/queries.Rd | 13 admiral-0.8.0/admiral/man/queries_mh.Rd |only admiral-0.8.0/admiral/man/query.Rd | 25 admiral-0.8.0/admiral/man/reexports.Rd | 5 admiral-0.8.0/admiral/man/restrict_derivation.Rd | 8 admiral-0.8.0/admiral/man/restrict_imputed_dtc_dt.Rd |only admiral-0.8.0/admiral/man/restrict_imputed_dtc_dtm.Rd |only admiral-0.8.0/admiral/man/roxygen |only admiral-0.8.0/admiral/man/sdg_select.Rd | 23 admiral-0.8.0/admiral/man/signal_duplicate_records.Rd | 9 admiral-0.8.0/admiral/man/slice_derivation.Rd | 8 admiral-0.8.0/admiral/man/smq_select.Rd | 23 admiral-0.8.0/admiral/man/tte_source.Rd | 28 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| 237 - admiral-0.8.0/admiral/tests/testthat/test-derive_var_atoxgr.R |only admiral-0.8.0/admiral/tests/testthat/test-derive_var_confirmation_flag.R |only admiral-0.8.0/admiral/tests/testthat/test-derive_var_disposition_status.R | 16 admiral-0.8.0/admiral/tests/testthat/test-derive_var_dthcaus.R | 214 - admiral-0.8.0/admiral/tests/testthat/test-derive_var_extreme_date.R | 95 admiral-0.8.0/admiral/tests/testthat/test-derive_var_last_dose_amt.R | 50 admiral-0.8.0/admiral/tests/testthat/test-derive_var_last_dose_date.R | 53 admiral-0.8.0/admiral/tests/testthat/test-derive_var_last_dose_grp.R | 31 admiral-0.8.0/admiral/tests/testthat/test-derive_vars_duration.R | 71 admiral-0.8.0/admiral/tests/testthat/test-derive_vars_last_dose.R | 143 - admiral-0.8.0/admiral/tests/testthat/test-filter_confirmation.R |only admiral-0.8.0/admiral/tests/testthat/test-user_helpers.R | 41 admiral-0.8.0/admiral/tests/testthat/test-utils.R | 45 admiral-0.8.0/admiral/vignettes/adsl.Rmd | 203 + admiral-0.8.0/admiral/vignettes/bds_exposure.Rmd | 12 admiral-0.8.0/admiral/vignettes/bds_finding.Rmd | 12 admiral-0.8.0/admiral/vignettes/bds_tte.Rmd | 57 admiral-0.8.0/admiral/vignettes/higher_order.Rmd |only admiral-0.8.0/admiral/vignettes/imputation.Rmd | 138 - admiral-0.8.0/admiral/vignettes/lab_grading.Rmd |only admiral-0.8.0/admiral/vignettes/occds.Rmd | 50 admiral-0.8.0/admiral/vignettes/queries_dataset.Rmd | 2 375 files changed, 8982 insertions(+), 5947 deletions(-)
Title: Transformation Models with Mixed Effects
Description: Likelihood-based estimation of mixed-effects transformation models
using the Template Model Builder ('TMB', Kristensen et al., 2016)
<doi:10.18637/jss.v070.i05>. The technical details of transformation models
are given in Hothorn et al. (2018) <doi:10.1111/sjos.12291>. Likelihood
contributions of exact, randomly censored (left, right, interval) and
truncated observations are supported. The random effects are assumed to be
normally distributed on the scale of the transformation function, the
marginal likelihood is evaluated using the Laplace approximation, and the
gradients are calculated with automatic differentiation (Tamasi & Hothorn,
2021) <doi:10.32614/RJ-2021-075>. Penalized smooth shift terms can be
defined using 'mgcv'.
Author: Balint Tamasi [aut, cre] ,
Torsten Hothorn [ctb]
Maintainer: Balint Tamasi <balint.tamasi@uzh.ch>
Diff between tramME versions 1.0.2 dated 2022-07-04 and 1.0.3 dated 2022-09-05
DESCRIPTION | 33 ++++++++++++++++------------ MD5 | 22 +++++++++--------- NEWS.md | 5 ++++ R/smooth.R | 4 +-- R/terms.R | 23 ++++++++++++++++--- R/tramTMB.R | 13 ++++------- inst/doc/RJ-2021-075.pdf |binary inst/doc/mixed-effects-additive-models.R | 4 +-- inst/doc/mixed-effects-additive-models.Rnw | 6 ++--- inst/doc/mixed-effects-additive-models.pdf |binary vignettes/mixed-effects-additive-models.Rnw | 6 ++--- vignettes/sim1.rda |binary 12 files changed, 69 insertions(+), 47 deletions(-)
Title: Nonparametric Kernel Smoothing Methods for Mixed Data Types
Description: Nonparametric (and semiparametric) kernel methods that seamlessly handle a mix of continuous, unordered, and ordered factor data types. We would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC, <https://www.nserc-crsng.gc.ca/>), the Social Sciences and Humanities Research Council of Canada (SSHRC, <https://www.sshrc-crsh.gc.ca/>), and the Shared Hierarchical Academic Research Computing Network (SHARCNET, <https://sharcnet.ca/>).
Author: Jeffrey S. Racine [aut, cre],
Tristen Hayfield [aut]
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
Diff between np versions 0.60-13 dated 2022-08-16 and 0.60-14 dated 2022-09-05
CHANGELOG | 10 +++++++++- DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- R/zzz.R | 2 +- inst/doc/entropy_np.pdf |binary inst/doc/np.pdf |binary inst/doc/np_faq.Rnw | 24 +++++++++++++++++++----- inst/doc/np_faq.pdf |binary src/jksum.c | 4 ++-- vignettes/np_faq.Rnw | 24 +++++++++++++++++++----- 10 files changed, 64 insertions(+), 28 deletions(-)
Title: Fast and Robust Hierarchical Clustering with Noise Points
Detection
Description: A retake on the Genie algorithm
(Gagolewski, 2021 <DOI:10.1016/j.softx.2021.100722>) - a robust
hierarchical clustering method
(Gagolewski, Bartoszuk, Cena, 2016 <DOI:10.1016/j.ins.2016.05.003>).
Now faster and more memory efficient; determining the whole hierarchy
for datasets of 10M points in low dimensional Euclidean spaces or
100K points in high-dimensional ones takes only 1-2 minutes.
Allows clustering with respect to mutual reachability distances
so that it can act as a noise point detector or a robustified version of
'HDBSCAN*' (that is able to detect a predefined number of
clusters and hence it does not dependent on the somewhat
fragile 'eps' parameter).
The package also features an implementation of economic inequity indices
(the Gini, Bonferroni index), external cluster validity measures
(e.g., the adjusted asymmetric accuracy and partition similarity scores
such as the adjusted Rand, Fowlkes-Mallows, adjusted mutual information,
and pair sets indices),
and intern [...truncated...]
Author: Marek Gagolewski [aut, cre, cph]
,
Maciej Bartoszuk [ctb],
Anna Cena [ctb],
Peter M. Larsen [ctb]
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between genieclust versions 1.0.1 dated 2022-08-08 and 1.1.0 dated 2022-09-05
DESCRIPTION | 20 +- MD5 | 63 ++++-- NAMESPACE | 12 + NEWS | 66 +++++- R/RcppExports.R | 315 +++++++++++++++++++++++++++----- R/gclust.R | 10 - R/genieclust-package.R | 2 R/mst.R | 40 ++-- man/cluster_validity_measures.Rd |only man/comparing_partitions.Rd | 141 ++++++++++---- man/emst_mlpack.Rd | 5 man/gclust.Rd | 10 - man/genieclust-package.Rd | 2 man/inequity.Rd | 18 + man/mst.Rd | 24 +- src/RcppExports.cpp | 183 +++++++++++++++++- src/c_common.h | 10 - src/c_compare_partitions.h | 233 +++++++++++++++++++---- src/c_cvi.h |only src/c_matrix.h | 8 src/c_scipy_rectangular_lsap.h | 10 - src/cvi.h |only src/cvi_calinski_harabasz.h |only src/cvi_davies_bouldin.h |only src/cvi_dunnowa.h |only src/cvi_generalized_dunn.h |only src/cvi_generalized_dunn_delta.h |only src/cvi_generalized_dunn_lowercase_d1.h |only src/cvi_generalized_dunn_lowercase_d2.h |only src/cvi_generalized_dunn_lowercase_d3.h |only src/cvi_generalized_dunn_lowercase_d4.h |only src/cvi_generalized_dunn_lowercase_d5.h |only src/cvi_generalized_dunn_lowercase_d6.h |only src/cvi_generalized_dunn_uppercase_d1.h |only src/cvi_generalized_dunn_uppercase_d2.h |only src/cvi_generalized_dunn_uppercase_d3.h |only src/cvi_silhouette.h |only src/cvi_wcnn.h |only src/cvi_wcss.h |only src/r_compare_partitions.cpp | 194 +++++++++++++++---- src/r_cvi.cpp |only src/r_gclust.cpp | 14 - src/r_inequity.cpp | 18 + 43 files changed, 1111 insertions(+), 287 deletions(-)
Title: ATPOL Grid Implementation
Description: ATPOL is a rectangular grid system used for botanical studies in Poland. The ATPOL grid was developed in Institute of Botany, Jagiellonian University, Krakow, Poland in '70. Since then it is widely used to represent distribution of plants in Poland.
'atpolR' provides functions to translate geographic coordinates to the grid and vice versa. It also allows to create a choreograph map.
Author: Grzegorz Sapijaszko [aut, cre, cph],
Lukasz Komsta [ctb],
Marek Verey [ctb]
Maintainer: Grzegorz Sapijaszko <grzegorz@sapijaszko.net>
Diff between atpolR versions 0.1.0 dated 2022-08-31 and 0.1.1 dated 2022-09-05
DESCRIPTION | 8 ++-- MD5 | 14 +++---- NEWS.md | 5 ++ R/plot_points_on_atpol.R | 68 ++++++++++++++++---------------------- build/partial.rdb |binary inst/doc/atpolR.Rmd | 21 +++++------ inst/doc/atpolR.html | 84 ++++++++++++++++++++++------------------------- vignettes/atpolR.Rmd | 21 +++++------ 8 files changed, 106 insertions(+), 115 deletions(-)
Title: Efficient Computations of Standard Clustering Comparison
Measures
Description: Implements an efficient O(n) algorithm based on bucket-sorting for
fast computation of standard clustering comparison measures. Available measures
include adjusted Rand index (ARI), normalized information distance (NID),
normalized mutual information (NMI), adjusted mutual information (AMI),
normalized variation information (NVI) and entropy, as described in Vinh et al (2009)
<doi:10.1145/1553374.1553511>. Include AMI (Adjusted Mutual Information) since version 0.1.2,
a modified version of ARI (MARI), as described in Sundqvist et al. <doi:10.1007/s00180-022-01230-7>
and simple Chi-square distance since version 1.0.0.
Author: Julien Chiquet [aut, cre] ,
Guillem Rigaill [aut],
Martina Sundqvist [aut],
Valentin Dervieux [ctb]
Maintainer: Julien Chiquet <julien.chiquet@inrae.fr>
Diff between aricode versions 1.0.0 dated 2020-06-26 and 1.0.1 dated 2022-09-05
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/aricode-package.R | 2 +- man/aricode.Rd | 2 +- src/RcppExports.cpp | 5 +++++ src/aricode.cpp | 19 ++++++++----------- 7 files changed, 31 insertions(+), 25 deletions(-)
Title: Accelerated Oblique Random Survival Forests
Description: Fit, interpret, and make predictions with oblique random survival forests. Oblique decision trees are notoriously slow compared to their axis based counterparts, but 'aorsf' runs as fast or faster than axis-based decision tree algorithms for right-censored time-to-event outcomes. Methods to accelerate and interpret the oblique random survival forest are described in Jaeger et al., (2022) <arXiv:2208.01129>.
Author: Byron Jaeger [aut, cre] ,
Nicholas Pajewski [ctb],
Sawyer Welden [ctb],
Christopher Jackson [rev]
Maintainer: Byron Jaeger <bjaeger@wakehealth.edu>
Diff between aorsf versions 0.0.1 dated 2022-08-23 and 0.0.2 dated 2022-09-05
DESCRIPTION | 6 - MD5 | 12 +-- NEWS.md | 4 + inst/doc/aorsf.html | 6 - man/orsf.Rd | 80 +++++++++++----------- tests/testthat/test-orsf.R | 132 +++++++++++++++++++------------------ tests/testthat/test-orsf_predict.R | 3 7 files changed, 126 insertions(+), 117 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-19 0.3.0
2021-10-07 0.2.0
2021-06-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-13 0.1.0
Title: Relational Data Modeler
Description: The aim of this package is to manipulate relational
data models in R.
It provides functions to create, modify and export data models
in json format.
It also allows importing models created
with 'MySQL Workbench' (<https://www.mysql.com/products/workbench/>).
These functions are accessible through a graphical user
interface made with 'shiny'.
Constraints such as types, keys, uniqueness and mandatory fields are
automatically checked and corrected when editing a model.
Finally, real data can be confronted to a model to check their compatibility.
Author: Patrice Godard [aut, cre, cph]
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Diff between ReDaMoR versions 0.6.3 dated 2022-04-13 and 0.6.5 dated 2022-09-05
DESCRIPTION | 16 ++--- MD5 | 19 +++--- R/model_relational_data.R | 133 +++++++++++++++++++++++++++++---------------- build/vignette.rds |binary inst/doc/ReDaMoR.R | 4 + inst/doc/ReDaMoR.Rmd | 14 +++- inst/doc/ReDaMoR.html | 30 +++++----- inst/pkgdown.yml |only man/confront_data.Rd | 8 ++ man/read_SQL_data_model.Rd | 4 - vignettes/ReDaMoR.Rmd | 14 +++- 11 files changed, 155 insertions(+), 87 deletions(-)
Title: Bayesian Latent Gaussian Modelling using INLA and Extensions
Description: Facilitates spatial and general latent Gaussian modeling using
integrated nested Laplace approximation via the INLA package (<https://www.r-inla.org>).
Additionally, extends the GAM-like model class to more general nonlinear predictor
expressions, and implements a log Gaussian Cox process likelihood for
modeling univariate and spatial point processes based on ecological survey data.
Model components are specified with general inputs and mapping methods to the
latent variables, and the predictors are specified via general R expressions,
with separate expressions for each observation likelihood model in
multi-likelihood models. A prediction method based on fast Monte Carlo sampling
allows posterior prediction of general expressions of the latent variables.
Ecology-focused introduction in Bachl, Lindgren, Borchers, and Illian (2019)
<doi:10.1111/2041-210X.13168>.
Author: Finn Lindgren [aut, cre, cph] ,
Fabian E. Bachl [aut, cph] ,
David L. Borchers [ctb, dtc, cph] ,
Daniel Simpson [ctb, cph] ,
Lindesay Scott-Howard [ctb, dtc, cph] ,
Seaton Andy [ctb] ,
Suen Man Ho [ctb, cph] ,
Roudier Pierre [ctb, cph] ,
Meehan Tim [ [...truncated...]
Maintainer: Finn Lindgren <finn.lindgren@gmail.com>
Diff between inlabru versions 2.5.2 dated 2022-03-30 and 2.5.3 dated 2022-09-05
DESCRIPTION | 48 - MD5 | 119 +-- NAMESPACE | 5 NEWS.md | 29 R/bru.gof.R | 24 R/bru.inference.R | 197 +++-- R/bru.integration.R | 13 R/bru.spatial.R | 3 R/data.gorillas.R | 5 R/data.mexdolphin.R | 10 R/data.mrsea.R | 4 R/data.robins_subset.R |only R/effect.R | 1075 ----------------------------- R/environment.R | 2 R/fmesher_utils.R | 10 R/ggplot.R | 134 +-- R/inla.R | 2 R/local_testthat.R | 8 R/mappers.R |only R/model.R | 4 R/nlinla.R | 8 R/spde.R | 5 R/track_plotting.R | 126 ++- R/utils.R | 14 README.md | 20 build/vignette.rds |binary data/robins_subset.rda |only inst/doc/linearapprox.html | 21 inst/doc/method.Rmd | 309 +++++++- inst/doc/method.html | 412 +++++++++-- inst/doc/website_examples.html | 4 inst/misc/Lambert_ocean.png |binary man/bru_mapper.Rd | 50 + man/bru_mapper_methods.Rd | 8 man/bru_summarise.Rd |only man/component_eval.Rd | 4 man/devel.cvmeasure.Rd | 8 man/figures/README-example-1.png |binary man/gg.prediction.Rd | 7 man/gorillas.Rd | 5 man/inlabru-deprecated.Rd | 10 man/local_testthat.Rd | 18 man/mexdolphin.Rd | 6 man/mrsea.Rd | 4 man/predict.bru.Rd | 4 man/robins_subset.Rd |only man/spoly.Rd | 3 man/summary.component.Rd | 4 tests/testthat/_snaps/latent_spde2D.md | 4 tests/testthat/_snaps/lgcp_1d.md | 16 tests/testthat/_snaps/lgcp_2d.md | 4 tests/testthat/test_copy.R | 27 tests/testthat/test_ipoints.R | 20 tests/testthat/test_latent_clinear.R | 5 tests/testthat/test_latent_factor.R | 2 tests/testthat/test_latent_fixed_effects.R | 38 - tests/testthat/test_lgcp_1d.R | 16 tests/testthat/test_lgcp_1d_nonlinear.R | 23 tests/testthat/test_lgcp_2d.R | 12 tests/testthat/test_mapper.R | 6 tests/testthat/test_predict.R | 51 + tests/testthat/test_utils.R | 1 vignettes/method.Rmd | 309 +++++++- 63 files changed, 1727 insertions(+), 1549 deletions(-)
More information about greta.dynamics at CRAN
Permanent link
Title: A Simple HTTP Database Interface to 'ClickHouse'
Description: 'ClickHouse' (<https://clickhouse.com/>)
is an open-source, high performance columnar
OLAP (online analytical processing of queries) database management system
for real-time analytics using SQL. This 'DBI' backend
relies on the 'ClickHouse' HTTP interface and support HTTPS protocol.
Author: Patrice Godard [aut, cre, cph]
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Diff between ClickHouseHTTP versions 0.1.1 dated 2022-03-29 and 0.1.3 dated 2022-09-05
DESCRIPTION | 8 +- MD5 | 8 +- R/connection.R | 171 ++++++++++++++++++++++++++++++--------------------------- R/driver.R | 22 ++++--- R/result.R | 35 ++++++----- 5 files changed, 130 insertions(+), 114 deletions(-)
More information about ClickHouseHTTP at CRAN
Permanent link
Title: Spatiotemporal Boundary Detection Model for Areal Unit Data
Description: Implements a spatiotemporal boundary detection model with a dissimilarity
metric for areal data with inference in a Bayesian setting using Markov chain
Monte Carlo (MCMC). The response variable can be modeled as Gaussian (no nugget),
probit or Tobit link and spatial correlation is introduced at each time point
through a conditional autoregressive (CAR) prior. Temporal correlation is introduced
through a hierarchical structure and can be specified as exponential or first-order
autoregressive. Full details of the package can be found in the accompanying vignette.
Furthermore, the details of the package can be found in "Diagnosing Glaucoma
Progression with Visual Field Data Using a Spatiotemporal Boundary Detection Method",
by Berchuck et al (2018), <arXiv:1805.11636>. The paper is in press at the Journal of
the American Statistical Association.
Author: Samuel I. Berchuck [aut, cre]
Maintainer: Samuel I. Berchuck <sib2@duke.edu>
Diff between womblR versions 1.0.4 dated 2018-12-04 and 1.0.5 dated 2022-09-05
DESCRIPTION | 10 MD5 | 48 +- NEWS.md | 4 R/GarwayHeath-data.R | 2 R/PLOT_Sensitivity.R | 17 build/vignette.rds |binary inst/doc/womblR-example.R | 74 +-- inst/doc/womblR-example.html | 799 +++++++++++++++++++++++++++++++++---------- man/GarwayHeath.Rd | 8 man/HFAII_Queen.Rd | 6 man/HFAII_QueenHF.Rd | 6 man/HFAII_Rook.Rd | 6 man/PlotAdjacency.Rd | 22 - man/PlotSensitivity.Rd | 22 - man/PlotVfTimeSeries.Rd | 15 man/STBDwDM.Rd | 23 - man/VFSeries.Rd | 6 man/diagnostics.Rd | 8 man/womblR.Rd | 8 src/DIAG_NormalLogLik.cpp | 3 src/DIAG_SamplePPD.cpp | 3 src/DIAG_TobitLogLik.cpp | 3 src/PRED_ThetaKrigging.cpp | 3 src/PRED_YKrigging.cpp | 3 src/RcppExports.cpp | 5 25 files changed, 810 insertions(+), 294 deletions(-)
Title: Variance Ratio Tests and Other Tests for Martingale Difference
Hypothesis
Description: A collection of statistical tests for martingale difference hypothesis, including automatic portmanteau test (Escansiano and Lobato, 2009) <doi:10.1016/j.jeconom.2009.03.001> and automatic variance ratio test (Kim, 2009) <doi:10.1016/j.frl.2009.04.003>.
Author: Jae H. Kim
Maintainer: Jae H. Kim <jaekim8080@gmail.com>
Diff between vrtest versions 1.0 dated 2022-07-02 and 1.1 dated 2022-09-05
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/Wright.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Develop and Apply Two-Regression Algorithms
Description: Facilitates development and application of two-regression
algorithms for research-grade wearable devices. It provides an easy
way for users to access previously-developed algorithms, and also to
develop their own. Initial motivation came from Hibbing PR, LaMunion SR,
Kaplan AS, & Crouter SE (2018) <doi:10.1249/MSS.0000000000001532>.
However, other algorithms are now supported. Please see the associated
references in the package documentation for full details of the algorithms
that are supported.
Author: Paul R. Hibbing [aut, cre],
Vincent T. van Hees [ctb]
Maintainer: Paul R. Hibbing <paulhibbing@gmail.com>
Diff between TwoRegression versions 0.1.2 dated 2018-03-19 and 1.0.0 dated 2022-09-05
TwoRegression-0.1.2/TwoRegression/R/Data.R |only TwoRegression-0.1.2/TwoRegression/R/Dates&Times.R |only TwoRegression-0.1.2/TwoRegression/R/File_Reading_Functions.R |only TwoRegression-0.1.2/TwoRegression/R/File_Reading_Helper_Functions.R |only TwoRegression-0.1.2/TwoRegression/R/IMU_ActiGraph_Scripts.R |only TwoRegression-0.1.2/TwoRegression/R/IMU_TwoRegressionProcessing_Helper_Functions.R |only TwoRegression-0.1.2/TwoRegression/R/IMU_TwoRegressionProcessing_MasterFunction.R |only TwoRegression-0.1.2/TwoRegression/R/Messages.R |only TwoRegression-0.1.2/TwoRegression/R/Sensor_Functions.R |only TwoRegression-0.1.2/TwoRegression/R/zzz.R |only TwoRegression-0.1.2/TwoRegression/man/AG_collapse.Rd |only TwoRegression-0.1.2/TwoRegression/man/TwoRegression.Rd |only TwoRegression-0.1.2/TwoRegression/man/algorithm_verify.Rd |only TwoRegression-0.1.2/TwoRegression/man/apply_two_regression_hibbing18.Rd |only TwoRegression-0.1.2/TwoRegression/man/attachment_verify.Rd |only TwoRegression-0.1.2/TwoRegression/man/check_columns.Rd |only TwoRegression-0.1.2/TwoRegression/man/check_second.Rd |only TwoRegression-0.1.2/TwoRegression/man/classify_magnetometer.Rd |only TwoRegression-0.1.2/TwoRegression/man/cv.Rd |only TwoRegression-0.1.2/TwoRegression/man/get_VM.Rd |only TwoRegression-0.1.2/TwoRegression/man/get_cvPER.Rd |only TwoRegression-0.1.2/TwoRegression/man/get_cv_vars.Rd |only TwoRegression-0.1.2/TwoRegression/man/get_day_of_year.Rd |only TwoRegression-0.1.2/TwoRegression/man/get_directions.Rd |only TwoRegression-0.1.2/TwoRegression/man/get_imu_file_meta.Rd |only TwoRegression-0.1.2/TwoRegression/man/get_minute.Rd |only TwoRegression-0.1.2/TwoRegression/man/get_raw_file_meta.Rd |only TwoRegression-0.1.2/TwoRegression/man/hibbing18_twoReg_process.Rd |only TwoRegression-0.1.2/TwoRegression/man/imu_collapse.Rd |only TwoRegression-0.1.2/TwoRegression/man/imu_filter_gyroscope.Rd |only TwoRegression-0.1.2/TwoRegression/man/imu_verify.Rd |only TwoRegression-0.1.2/TwoRegression/man/message_update.Rd |only TwoRegression-0.1.2/TwoRegression/man/read_AG_raw.Rd |only TwoRegression-0.1.2/TwoRegression/man/read_IMU.Rd |only TwoRegression-0.1.2/TwoRegression/tests/testthat/IMU_Sample_Data.rds |only TwoRegression-0.1.2/TwoRegression/tests/testthat/test-IMU_master_function.R |only TwoRegression-1.0.0/TwoRegression/DESCRIPTION | 35 TwoRegression-1.0.0/TwoRegression/MD5 | 130 - TwoRegression-1.0.0/TwoRegression/NAMESPACE | 19 TwoRegression-1.0.0/TwoRegression/NEWS.md | 26 TwoRegression-1.0.0/TwoRegression/R/0a_global_vars_&_imports.R |only TwoRegression-1.0.0/TwoRegression/R/0b_package_doc.R |only TwoRegression-1.0.0/TwoRegression/R/0c_data_doc.R |only TwoRegression-1.0.0/TwoRegression/R/0d_Messages.R |only TwoRegression-1.0.0/TwoRegression/R/TwoRegression.R | 141 + TwoRegression-1.0.0/TwoRegression/R/crouter__main.R |only TwoRegression-1.0.0/TwoRegression/R/crouter_helpers.R |only TwoRegression-1.0.0/TwoRegression/R/cv_2rm.R |only TwoRegression-1.0.0/TwoRegression/R/fit_2rm__main.R |only TwoRegression-1.0.0/TwoRegression/R/fit_2rm_helpers.R |only TwoRegression-1.0.0/TwoRegression/R/hibbing__main.R |only TwoRegression-1.0.0/TwoRegression/R/hibbing_directions.R |only TwoRegression-1.0.0/TwoRegression/R/hibbing_input_validation.R |only TwoRegression-1.0.0/TwoRegression/R/hibbing_smooth_old.R |only TwoRegression-1.0.0/TwoRegression/R/hibbing_subwrapper__main.R |only TwoRegression-1.0.0/TwoRegression/R/hibbing_subwrapper_validation.R |only TwoRegression-1.0.0/TwoRegression/R/plot_2rm__main.R |only TwoRegression-1.0.0/TwoRegression/R/plot_2rm_helpers.R |only TwoRegression-1.0.0/TwoRegression/R/predict_2rm.R |only TwoRegression-1.0.0/TwoRegression/R/smooth_2rm.R |only TwoRegression-1.0.0/TwoRegression/R/summary_2rm__main.R |only TwoRegression-1.0.0/TwoRegression/R/summary_2rm_helpers.R |only TwoRegression-1.0.0/TwoRegression/R/sysdata.rda |binary TwoRegression-1.0.0/TwoRegression/R/zz_utils.R |only TwoRegression-1.0.0/TwoRegression/README.md | 36 TwoRegression-1.0.0/TwoRegression/build/vignette.rds |binary TwoRegression-1.0.0/TwoRegression/data/all_data.rda |binary TwoRegression-1.0.0/TwoRegression/data/count_data.rda |only TwoRegression-1.0.0/TwoRegression/data/imu_to_check.rda |binary TwoRegression-1.0.0/TwoRegression/data/imu_to_collapse.rda |binary TwoRegression-1.0.0/TwoRegression/data/raw_for_cv.rda |binary TwoRegression-1.0.0/TwoRegression/data/raw_to_collapse.rda |binary TwoRegression-1.0.0/TwoRegression/inst/CITATION | 8 TwoRegression-1.0.0/TwoRegression/inst/doc/TwoRegression.R | 223 ++ TwoRegression-1.0.0/TwoRegression/inst/doc/TwoRegression.Rmd | 435 ++++- TwoRegression-1.0.0/TwoRegression/inst/doc/TwoRegression.html | 805 ++++++++-- TwoRegression-1.0.0/TwoRegression/man/DualCP_LOSO.Rd |only TwoRegression-1.0.0/TwoRegression/man/TwoRegression-Function.Rd |only TwoRegression-1.0.0/TwoRegression/man/TwoRegression-Package.Rd |only TwoRegression-1.0.0/TwoRegression/man/all_data.Rd | 82 - TwoRegression-1.0.0/TwoRegression/man/count_data.Rd |only TwoRegression-1.0.0/TwoRegression/man/directions.Rd |only TwoRegression-1.0.0/TwoRegression/man/fit_2rm.Rd |only TwoRegression-1.0.0/TwoRegression/man/get_2rm_formula.Rd |only TwoRegression-1.0.0/TwoRegression/man/get_cut_point.Rd |only TwoRegression-1.0.0/TwoRegression/man/get_cv.Rd |only TwoRegression-1.0.0/TwoRegression/man/get_lm_formula.Rd |only TwoRegression-1.0.0/TwoRegression/man/hibbing-helpers.Rd |only TwoRegression-1.0.0/TwoRegression/man/hibbing-input-validation.Rd |only TwoRegression-1.0.0/TwoRegression/man/imu_to_check.Rd | 54 TwoRegression-1.0.0/TwoRegression/man/imu_to_collapse.Rd | 76 TwoRegression-1.0.0/TwoRegression/man/plot.TwoRegression.Rd |only TwoRegression-1.0.0/TwoRegression/man/plotCP.Rd |only TwoRegression-1.0.0/TwoRegression/man/plot_sed.Rd |only TwoRegression-1.0.0/TwoRegression/man/plot_walkrun.Rd |only TwoRegression-1.0.0/TwoRegression/man/predict.TwoRegression.Rd |only TwoRegression-1.0.0/TwoRegression/man/raw_for_cv.Rd | 40 TwoRegression-1.0.0/TwoRegression/man/raw_to_collapse.Rd | 42 TwoRegression-1.0.0/TwoRegression/man/smooth_2rm.Rd |only TwoRegression-1.0.0/TwoRegression/man/summary.TwoRegression.Rd |only TwoRegression-1.0.0/TwoRegression/tests/testthat.R | 8 TwoRegression-1.0.0/TwoRegression/tests/testthat/_snaps |only TwoRegression-1.0.0/TwoRegression/tests/testthat/test-cv_2rm.R |only TwoRegression-1.0.0/TwoRegression/tests/testthat/test-directions.R |only TwoRegression-1.0.0/TwoRegression/tests/testthat/test-fit_2rm__main.R |only TwoRegression-1.0.0/TwoRegression/tests/testthat/test-summary_2rm__main.R |only TwoRegression-1.0.0/TwoRegression/vignettes/TwoRegression.Rmd | 435 ++++- 107 files changed, 2079 insertions(+), 516 deletions(-)
Title: Spatially Varying Change Points
Description: Implements a spatially varying change point model with
unique intercepts, slopes, variance intercepts and slopes, and
change points at each location. Inference is within the
Bayesian setting using Markov chain Monte Carlo (MCMC). The
response variable can be modeled as Gaussian (no nugget),
probit or Tobit link and the five spatially varying parameter
are modeled jointly using a multivariate conditional
autoregressive (MCAR) prior. The MCAR is a unique process that
allows for a dissimilarity metric to dictate the local spatial
dependencies. Full details of the package can be found in the accompanying vignette.
Furthermore, the details of the package can be found in the corresponding paper on arXiv
by Berchuck et al (2018): "A spatially varying change points model for monitoring glaucoma
progression using visual field data", <arXiv:1811.11038>.
Author: Samuel I. Berchuck [aut, cre]
Maintainer: Samuel I. Berchuck <sib2@duke.edu>
Diff between spCP versions 1.2 dated 2018-12-05 and 1.3 dated 2022-09-05
DESCRIPTION | 10 MD5 | 38 +- R/GarwayHeath-data.R | 2 build/vignette.rds |binary inst/doc/spCP-example.R | 60 +-- inst/doc/spCP-example.html | 727 +++++++++++++++++++++++++++++++++++---------- man/GarwayHeath.Rd | 8 man/HFAII_Queen.Rd | 6 man/HFAII_QueenHF.Rd | 6 man/HFAII_Rook.Rd | 6 man/PlotCP.Rd | 31 + man/VFSeries.Rd | 6 man/diagnostics.Rd | 8 man/spCP.Rd | 22 + src/DIAG_NormalLogLik.cpp | 3 src/DIAG_ProbitLogLik.cpp | 3 src/DIAG_SamplePPD.cpp | 3 src/DIAG_TobitLogLik.cpp | 3 src/PRED_PredictFuture.cpp | 3 src/RcppExports.cpp | 5 20 files changed, 708 insertions(+), 242 deletions(-)
Title: Computes Proximity in Large Sparse Matrices
Description: Computes proximity between rows or columns of large matrices efficiently in C++.
Functions are optimised for large sparse matrices using the Armadillo and Intel TBB libraries.
Among several built-in similarity/distance measures, computation of correlation,
cosine similarity and Euclidean distance is particularly fast.
Author: Kohei Watanabe [cre, aut, cph]
,
Robrecht Cannoodt [aut]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between proxyC versions 0.3.1 dated 2022-08-22 and 0.3.2 dated 2022-09-05
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/proxy.R | 18 +++++++++--------- man/simil.Rd | 6 +++--- 5 files changed, 25 insertions(+), 19 deletions(-)
Title: Fast Spatial Regression using Moran Eigenvectors
Description: Functions for estimating spatial varying coefficient models, mixed models, and other spatial regression models for Gaussian and non-Gaussian data. Moran eigenvectors are used to an approximate Gaussian process modeling which is interpretable in terms of the Moran coefficient. The GP is used for modeling the spatial processes in residuals and regression coefficients. For details see Murakami (2021) <arXiv:1703.04467>.
Author: Daisuke Murakami <dmuraka@ism.ac.jp>
Maintainer: Daisuke Murakami <dmuraka@ism.ac.jp>
Diff between spmoran versions 0.2.2.5 dated 2022-08-08 and 0.2.2.6 dated 2022-09-05
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