Title: Robust Statistical Methods
Description: A toolbox of common robust statistical tests, including robust
descriptives, robust t-tests, and robust ANOVA. It is also available as a
module for 'jamovi' (see <https://www.jamovi.org> for more information).
Walrus is based on the WRS2 package by Patrick Mair, which is in turn based on
the scripts and work of Rand Wilcox. These analyses are described in depth in
the book 'Introduction to Robust Estimation & Hypothesis Testing'.
Author: Jonathon Love, Patrick Mair
Maintainer: Jonathon Love <jon@thon.cc>
Diff between walrus versions 1.0.4 dated 2022-03-09 and 1.0.5 dated 2022-09-07
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- R/walrus.R | 2 +- man/ranova.Rd | 13 +++++++++++-- man/rdesc.Rd | 15 +++++++++++++-- man/rplots.Rd | 11 +++++++++-- man/rttestIS.Rd | 18 +++++++++++++++--- man/walrus-package.Rd | 2 +- 8 files changed, 62 insertions(+), 23 deletions(-)
Title: Preparation, Checking and Post-Processing Data for PK/PD
Modeling
Description: Efficient tools for preparation, checking and post-processing of data in PK/PD (pharmacokinetics/pharmacodynamics) modeling, with focus on use of Nonmem. Helps with trivial but tedious tasks and tries to identify errors to save time on debugging. Implemented in 'data.table', but easily integrated with 'base' and 'tidyverse'.
Author: Philip Delff [aut, cre]
Maintainer: Philip Delff <philip@delff.dk>
Diff between NMdata versions 0.0.12 dated 2022-06-06 and 0.0.13 dated 2022-09-07
DESCRIPTION | 6 - MD5 | 80 +++++++++++--------- NAMESPACE | 3 NEWS.md | 23 +++++ R/NMcheckData.R | 15 ++- R/NMcheckDataFile.R | 8 +- R/NMexpandDoses.R |only R/NMextractText.R | 4 - R/NMgenText.R | 4 - R/NMreadCsv.R | 2 R/NMscanData.R | 1 R/NMscanInput.R | 2 R/NMwriteData.R | 4 - R/NMwriteSection.R | 9 +- R/addTAPD.R |only R/mergeCheck.R | 7 + R/summary_NMdata.R | 6 - R/tmpcol.R | 5 - README.md | 51 +++++++++++- inst/examples/data/mad.rds |only man/NMcheckData.Rd | 4 + man/NMexpandDoses.Rd |only man/NMextractText.Rd | 4 - man/NMgenText.Rd | 4 - man/NMorderColumns.Rd | 1 man/NMstamp.Rd | 1 man/NMwriteSection.Rd | 2 man/addTAPD.Rd |only man/figures/README-unnamed-chunk-2-1.png |binary man/findCovs.Rd | 1 man/findVars.Rd | 1 man/flagsAssign.Rd | 1 man/flagsCount.Rd | 1 man/mergeCheck.Rd | 1 man/tmpcol.Rd | 9 -- tests/testthat/testData/data/mad.rds |only tests/testthat/testOutput/pk.RData |binary tests/testthat/testOutput/pk.rds |binary tests/testthat/testReference/NMcheckDataFile_01.rds |only tests/testthat/testReference/NMexpandDoses_01.rds |only tests/testthat/testReference/NMscanData_30.rds |only tests/testthat/testReference/addTAPD_01.rds |only tests/testthat/testReference/addTAPD_02.rds |only tests/testthat/test_NMcheckData.R | 24 ------ tests/testthat/test_NMcheckDataFile.R |only tests/testthat/test_NMexpandDoses.R |only tests/testthat/test_NMscanData.R | 16 ++++ tests/testthat/test_addTAD.R |only 48 files changed, 197 insertions(+), 103 deletions(-)
Title: Utilities for Working with Google APIs
Description: Provides utilities for working with Google APIs
<https://developers.google.com/apis-explorer>. This includes
functions and classes for handling common credential types and for
preparing, executing, and processing HTTP requests.
Author: Jennifer Bryan [aut, cre] ,
Craig Citro [aut],
Hadley Wickham [aut] ,
Google Inc [cph],
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between gargle versions 1.2.0 dated 2021-07-02 and 1.2.1 dated 2022-09-07
DESCRIPTION | 43 MD5 | 144 +- NEWS.md | 17 R/Gargle-class.R | 15 R/credentials_app_default.R | 15 R/credentials_byo_oauth2.R | 6 R/credentials_external_account.R | 10 R/credentials_gce.R | 37 R/gargle-oauth-endpoint.R | 10 R/gargle-package.R | 6 R/inside-the-house.R | 4 R/oauth-cache.R | 17 R/request-develop.R | 14 R/request-make.R | 3 R/request_retry.R | 14 R/response_process.R | 17 R/roxygen-templates.R | 88 - R/secret.R | 3 R/utils-ui.R | 36 README.md | 4 build/vignette.rds |binary inst/WORDLIST | 4 inst/doc/auth-from-web.Rmd | 2 inst/doc/auth-from-web.html | 302 +++++- inst/doc/gargle-auth-in-client-package.R | 2 inst/doc/gargle-auth-in-client-package.Rmd | 10 inst/doc/gargle-auth-in-client-package.html | 477 ++++++++- inst/doc/get-api-credentials.Rmd | 4 inst/doc/get-api-credentials.html | 462 ++++++++- inst/doc/how-gargle-gets-tokens.Rmd | 4 inst/doc/how-gargle-gets-tokens.html | 492 ++++++++- inst/doc/non-interactive-auth.R | 2 inst/doc/non-interactive-auth.Rmd | 4 inst/doc/non-interactive-auth.html | 497 ++++++++-- inst/doc/request-helper-functions.html | 401 +++++++- inst/doc/troubleshooting.html | 316 +++++- man/AuthState-class.Rd | 60 - man/Gargle-class.Rd | 78 - man/GceToken.Rd | 72 - man/WifToken.Rd | 86 - man/cred_funs.Rd | 18 man/credentials_app_default.Rd | 8 man/credentials_byo_oauth2.Rd | 8 man/credentials_external_account.Rd | 4 man/credentials_gce.Rd | 2 man/gargle-package.Rd | 5 man/gargle_options.Rd | 6 man/oauth_external_token.Rd | 2 man/request_develop.Rd | 3 man/request_retry.Rd | 23 tests/spelling.R | 9 tests/testthat/_snaps/gargle-oauth-endpoint.md |only tests/testthat/_snaps/inside-the-house.md | 12 tests/testthat/_snaps/oauth-cache.md | 12 tests/testthat/_snaps/oauth-refresh.md | 21 tests/testthat/_snaps/request-develop.md | 8 tests/testthat/_snaps/response_process.md | 32 tests/testthat/_snaps/utils-ui.md | 104 ++ tests/testthat/fixtures/sheets-spreadsheets-get-quota-exceeded-readgroup_429.R | 2 tests/testthat/test-AuthState-class.R | 8 tests/testthat/test-credentials_app_default.R | 12 tests/testthat/test-fetch.R | 12 tests/testthat/test-gargle-oauth-endpoint.R |only tests/testthat/test-gce-token.R | 51 - tests/testthat/test-request-develop.R | 9 tests/testthat/test-request_retry.R | 45 tests/testthat/test-response_process.R | 2 tests/testthat/test-utils-ui.R | 11 vignettes/articles/managing-tokens-securely.Rmd | 6 vignettes/auth-from-web.Rmd | 2 vignettes/gargle-auth-in-client-package.Rmd | 10 vignettes/get-api-credentials.Rmd | 4 vignettes/how-gargle-gets-tokens.Rmd | 4 vignettes/non-interactive-auth.Rmd | 4 74 files changed, 3329 insertions(+), 908 deletions(-)
Title: Tidy Characterizations of Model Performance
Description: Tidy tools for quantifying how well model fits to a data set
such as confusion matrices, class probability curve summaries, and
regression metrics (e.g., RMSE).
Author: Max Kuhn [aut],
Davis Vaughan [aut],
Emil Hvitfeldt [aut, cre] ,
RStudio [cph, fnd]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@rstudio.com>
Diff between yardstick versions 1.0.0 dated 2022-06-06 and 1.1.0 dated 2022-09-07
DESCRIPTION | 17 +++-- MD5 | 16 ++-- NEWS.md | 7 ++ R/metrics.R | 8 -- README.md | 24 +++---- inst/doc/metric-types.html | 128 ++++++++++++++++++++------------------- inst/doc/multiclass.html | 18 ++--- man/yardstick-package.Rd | 3 tests/testthat/_snaps/metrics.md | 7 +- 9 files changed, 122 insertions(+), 106 deletions(-)
Title: Estimation of an Ordinary Differential Equation Model by
Parameter Cascade Method
Description: An implementation of the parameter cascade method in Ramsay, J. O., Hooker,G., Campbell, D., and Cao, J. (2007) for estimating ordinary differential equation models with missing or complete observations. It combines smoothing method and profile estimation to estimate any non-linear dynamic system. The package also offers variance estimates for parameters of interest based on either bootstrap or Delta method.
Author: Haixu Wang [aut, cre],
Jiguo Cao [aut]
Maintainer: Haixu Wang <haixuw@sfu.ca>
Diff between pCODE versions 0.9.3 dated 2019-11-23 and 0.9.4 dated 2022-09-07
pCODE-0.9.3/pCODE/README.md |only pCODE-0.9.3/pCODE/tests/testthat/test-deltavar.R |only pCODE-0.9.4/pCODE/DESCRIPTION | 11 pCODE-0.9.4/pCODE/MD5 | 16 pCODE-0.9.4/pCODE/NEWS.md | 4 pCODE-0.9.4/pCODE/R/PCODE.R | 49 +- pCODE-0.9.4/pCODE/build/vignette.rds |binary pCODE-0.9.4/pCODE/inst/doc/pcode-vignette.R | 24 - pCODE-0.9.4/pCODE/inst/doc/pcode-vignette.html | 537 ++++++++++++++++------- pCODE-0.9.4/pCODE/tests/testthat/test-PCODE.R | 64 +- 10 files changed, 461 insertions(+), 244 deletions(-)
Title: Mapping Fisheries Data and Spatial Analysis Tools
Description: This software has evolved from fisheries research conducted at the
Pacific Biological Station (PBS) in 'Nanaimo', British Columbia, Canada. It
extends the R language to include two-dimensional plotting features similar
to those commonly available in a Geographic Information System (GIS).
Embedded C code speeds algorithms from computational geometry, such as
finding polygons that contain specified point events or converting between
longitude-latitude and Universal Transverse Mercator (UTM) coordinates.
Additionally, we include 'C++' code developed by Angus Johnson for the
'Clipper' library, data for a global shoreline, and other data sets in the
public domain. Under the user's R library directory '.libPaths()',
specifically in './PBSmapping/doc', a complete user's guide is offered and
should be consulted to use package functions effectively.
Author: Jon T. Schnute [aut],
Nicholas Boers [aut],
Rowan Haigh [aut, cre],
Alex Couture-Beil [ctb],
Denis Chabot [ctb],
Chris Grandin [ctb],
Angus Johnson [ctb],
Paul Wessel [ctb],
Franklin Antonio [ctb],
Nicholas J. Lewin-Koh [ctb],
Roger Bivand [ctb]
Maintainer: Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>
Diff between PBSmapping versions 2.73.1 dated 2022-07-12 and 2.73.2 dated 2022-09-07
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- inst/doc/ChangeLog.txt | 9 +++++++-- man/PolySet.Rd | 22 +++++++++++----------- man/bcBathymetry.Rd | 2 +- man/calcArea.Rd | 4 ++-- man/convUL.Rd | 7 +++---- man/pythagoras.Rd | 4 ++-- 8 files changed, 38 insertions(+), 34 deletions(-)
Title: Model Species Distributions by Estimating the Probability of
Occurrence Using Presence-Only Data
Description: Provides a likelihood-based approach to modeling species distributions using presence-only data. In contrast to the popular software program MAXENT, this approach yields estimates of the probability of occurrence, which is a natural descriptor of a species' distribution.
Author: Richard Chandler, Andy Royle and Roeland Kindt
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between maxlike versions 0.1-8 dated 2019-11-30 and 0.1-9 dated 2022-09-07
maxlike-0.1-8/maxlike/README |only maxlike-0.1-9/maxlike/DESCRIPTION | 10 +++++----- maxlike-0.1-9/maxlike/MD5 | 9 ++++----- maxlike-0.1-9/maxlike/NEWS | 7 +++++++ maxlike-0.1-9/maxlike/man/carw.Rd | 2 +- maxlike-0.1-9/maxlike/man/maxlike.Rd | 8 +++----- 6 files changed, 20 insertions(+), 16 deletions(-)
Title: Extra Appenders for 'lgr'
Description: Additional appenders for the logging package 'lgr' that
support logging to databases, email and push notifications.
Author: Stefan Fleck [aut, cre]
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Diff between lgrExtra versions 0.0.6 dated 2022-05-05 and 0.0.7 dated 2022-09-07
DESCRIPTION | 8 +-- MD5 | 28 ++++++------- NEWS.md | 11 +++-- man/AppenderDbi.Rd | 74 +++++++++++++++++------------------ man/AppenderDigest.Rd | 56 +++++++++++++------------- man/AppenderDt.Rd | 56 +++++++++++++------------- man/AppenderElasticSearch.Rd | 80 +++++++++++++++++++------------------- man/AppenderGmail.Rd | 66 +++++++++++++++---------------- man/AppenderMail.Rd | 90 +++++++++++++++++++++---------------------- man/AppenderPushbullet.Rd | 90 +++++++++++++++++++++---------------------- man/AppenderSendmail.Rd | 85 ++++++++++++++++++++-------------------- man/AppenderSyslog.Rd | 54 ++++++++++++------------- man/LayoutDbi.Rd | 64 +++++++++++++++--------------- man/LayoutElasticSearch.Rd | 44 ++++++++++----------- man/Serializer.Rd | 30 +++++--------- 15 files changed, 417 insertions(+), 419 deletions(-)
Title: Clustering of Datasets
Description: Hierarchical and partitioning algorithms of blocks of variables. The partitioning algorithm includes an option called noise cluster to set aside atypical blocks of variables. The CLUSTATIS method (for quantitative blocks) (Llobell, Cariou, Vigneau, Labenne & Qannari (2020) <doi:10.1016/j.foodqual.2018.05.013>, Llobell, Vigneau & Qannari (2019) <doi:10.1016/j.foodqual.2019.02.017>) and the CLUSCATA method (for Check-All-That-Apply data) (Llobell, Cariou, Vigneau, Labenne & Qannari (2019) <doi:10.1016/j.foodqual.2018.09.006>, Llobell, Giacalone, Labenne & Qannari (2019) <doi:10.1016/j.foodqual.2019.05.017>) are the core of this package. The CATATIS methods allows to compute some indices and tests to control the quality of CATA data. Multivariate analysis and clustering of subjects for quantitative multiblock data, CATA, Free Sorting and JAR experiments are available.
Author: Fabien Llobell [aut, cre] ,
Evelyne Vigneau [ctb] ,
Veronique Cariou [ctb] ,
El Mostafa Qannari [ctb]
Maintainer: Fabien Llobell <fllobell@hotmail.fr>
Diff between ClustBlock versions 2.4.1 dated 2022-03-31 and 3.0.0 dated 2022-09-07
DESCRIPTION | 10 ++-- MD5 | 84 +++++++++++++++++++++++----------------- NAMESPACE | 7 +++ NEWS | 8 ++- R/PB_tuna.R |only R/catatis.R | 88 ++++++++++++++++++++++++++++++++---------- R/catatis_jar.R |only R/change_cata_format.R | 10 ++-- R/change_cata_format2.R |only R/cheese.R |only R/cluscata.R | 27 ++++++------ R/cluscata_jar.R |only R/cluscata_kmeans.R | 14 ++---- R/cluscata_kmeans_jar.R |only R/clustatis.R | 2 R/consistency_cata.R | 14 +----- R/consistency_cata_panel.R | 31 ++++++-------- R/plot.catatis.R | 2 R/plot.cluscata.R | 2 R/plot.clustatis.R | 2 R/plot.statis.R | 2 R/preprocess_JAR.R |only R/print.catatis.R | 2 R/print.cluscata.R | 2 R/print.clustatis.R | 2 R/print.statis.R | 2 R/statis.R | 1 R/summary.catatis.R | 2 R/summary.cluscata.R | 2 R/summary.clustatis.R | 2 R/summary.statis.R | 2 R/vp_s.R | 2 data/PB_tuna.rda |only data/cheese.rda |only inst/CITATION | 4 - man/ClustBlock-package.Rd | 20 ++++++--- man/PB_tuna.Rd |only man/catatis.Rd | 28 ++++++++++--- man/catatis_jar.Rd |only man/change_cata_format.Rd | 10 ++-- man/change_cata_format2.Rd |only man/cheese.Rd |only man/cluscata.Rd | 17 +++++--- man/cluscata_jar.Rd |only man/cluscata_kmeans.Rd | 6 +- man/cluscata_kmeans_jar.Rd |only man/clustatis.Rd | 2 man/consistency_cata.Rd | 2 man/consistency_cata_panel.Rd | 4 + man/preprocess_JAR.Rd |only man/statis.Rd | 1 51 files changed, 260 insertions(+), 156 deletions(-)
Title: Clean and Analyze Continuous Glucose Monitor Data
Description: This code provides several different functions for cleaning and analyzing continuous glucose monitor data. Currently it works with 'Dexcom', 'iPro 2', 'Diasend', 'Libre', or 'Carelink' data. The cleandata() function takes a directory of CGM data files and prepares them for analysis. cgmvariables() iterates through a directory of cleaned CGM data files and produces a single spreadsheet with data for each file in either rows or columns. The column format of this spreadsheet is compatible with REDCap data upload. cgmreport() also iterates through a directory of cleaned data, and produces PDFs of individual and aggregate AGP plots. Please visit <https://github.com/childhealthbiostatscore/R-Packages/> to download the new-user guide.
Author: Tim Vigers [aut, cre]
Maintainer: Tim Vigers <timothy.vigers@cuanschutz.edu>
Diff between cgmanalysis versions 2.7.3 dated 2022-07-07 and 2.7.4 dated 2022-09-07
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- R/cgmvariables.R | 16 +++++++++++++--- R/cleandata.R | 24 ++++++++++++++++++++---- man/cgmvariables.Rd | 8 +++++++- man/cleandata.Rd | 7 ++++++- 6 files changed, 57 insertions(+), 20 deletions(-)
Title: Broken Stick Model for Irregular Longitudinal Data
Description: Data on multiple individuals through time are often sampled at times that differ between persons. Irregular observation times can severely complicate the statistical analysis of the data. The broken stick model approximates each subject’s trajectory by one or more connected line segments. The times at which segments connect (breakpoints) are identical for all subjects and under control of the user. A well-fitting broken stick model effectively transforms individual measurements made at irregular times into regular trajectories with common observation times.
Specification of the model requires just three variables: time, measurement and subject. The model is a special case of the linear mixed model, with time as a linear B-spline and subject as the grouping factor. The main assumptions are: subjects are exchangeable, trajectories between consecutive breakpoints are straight, random effects follow a multivariate normal distribution, and unobserved data are missing at random.
The package [...truncated...]
Author: Stef van Buuren [aut, cre]
Maintainer: Stef van Buuren <stef.vanbuuren@tno.nl>
Diff between brokenstick versions 2.1.0 dated 2022-03-30 and 2.3.0 dated 2022-09-07
DESCRIPTION | 20 - MD5 | 84 ++-- NEWS.md | 24 + R/brokenstick.R | 12 R/fitted.R | 2 R/get.R | 64 ++- R/internals.R | 4 R/model.frame.R | 4 R/plot.R | 39 +- R/predict.R | 162 ++++---- R/smocc_200.R | 22 - R/summary.R | 4 README.md | 30 - build/vignette.rds |binary data/fit_200.rda |binary data/fit_200_light.rda |binary data/smocc_200.rda |binary inst/CITATION | 2 inst/doc/brokenstick.html | 233 +++++++++++- inst/doc/mainfunctions.R | 30 - inst/doc/mainfunctions.Rmd | 56 +- inst/doc/mainfunctions.html | 569 ++++++++++++++++++++++++------ inst/doc/oldfriends.R | 32 - inst/doc/oldfriends.Rmd | 10 inst/doc/oldfriends.html | 318 ++++++++++++++-- inst/doc/perfectmodel.R | 17 inst/doc/perfectmodel.Rmd | 23 + inst/doc/perfectmodel.html | 354 +++++++++++++++--- man/brokenstick.Rd | 14 man/fit_200.Rd | 6 man/fit_200_light.Rd | 6 man/get_knots.Rd | 12 man/get_omega.Rd | 16 man/get_r2.Rd | 1 man/kr.Rd | 6 man/plot.brokenstick.Rd | 9 man/plot_trajectory.Rd | 18 man/predict.Rd | 101 +++-- man/smocc_200.Rd | 18 tests/testthat/test-predict.brokenstick.R | 26 - vignettes/mainfunctions.Rmd | 56 +- vignettes/oldfriends.Rmd | 10 vignettes/perfectmodel.Rmd | 23 + 43 files changed, 1851 insertions(+), 586 deletions(-)
Title: Non-Parametric Causal Effects of Feasible Interventions Based on
Modified Treatment Policies
Description: Non-parametric estimators for casual effects based on longitudinal modified treatment
policies as described in Diaz, Williams, Hoffman, and Schenck <doi:10.1080/01621459.2021.1955691>, traditional point treatment,
and traditional longitudinal effects. Continuous, binary, and categorical treatments are allowed as well are
censored outcomes. The treatment mechanism is estimated via a density ratio classification procedure
irrespective of treatment variable type. For both continuous and binary outcomes, additive treatment effects
can be calculated and relative risks and odds ratios may be calculated for binary outcomes.
Author: Nicholas Williams [aut, cre, cph]
,
Ivan Diaz [aut, cph]
Maintainer: Nicholas Williams <ntwilliams.personal@gmail.com>
Diff between lmtp versions 1.3.0 dated 2022-05-21 and 1.3.1 dated 2022-09-07
DESCRIPTION | 11 +-- MD5 | 40 ++++++------ NEWS.md | 16 +++++ R/contrasts.R | 14 ++++ R/density_ratios.R | 17 +++-- R/estimators.R | 123 ++++++++++++++++++++++++++++++--------- R/gcomp.R | 12 ++- R/print.R | 2 R/sdr.R | 18 ++++- R/sl.R | 11 +++ R/tmle.R | 12 ++- R/utils.R | 8 +- README.md | 31 +++++++-- build/partial.rdb |binary man/figures/pointtrt.png |only man/figures/survival.png |only man/figures/timevary.png |only man/figures/timevarysurvival.png |only man/lmtp_contrast.Rd | 4 - man/lmtp_ipw.Rd | 71 ++++++++++++---------- man/lmtp_sdr.Rd | 68 ++++++++++++--------- man/lmtp_sub.Rd | 6 + man/lmtp_tmle.Rd | 56 ++++++++++------- 23 files changed, 354 insertions(+), 166 deletions(-)
Title: Tools for Biostatistics, Public Policy, and Law
Description: Statistical tests widely utilized in biostatistics, public policy, and law. Along with the well-known tests for equality of means and variances, randomness, and measures of relative variability, the package contains new robust tests of symmetry, omnibus and directional tests of normality, and their graphical counterparts such as robust QQ plot, robust trend tests for variances, etc. All implemented tests and methods are illustrated by simulations and real-life examples from legal statistics, economics, and biostatistics.
Author: Joseph L. Gastwirth [aut],
Yulia R. Gel [aut],
W. L. Wallace Hui [aut],
Vyacheslav Lyubchich [aut, cre]
,
Weiwen Miao [aut],
Kimihiro Noguchi [aut]
Maintainer: Vyacheslav Lyubchich <lyubchic@umces.edu>
Diff between lawstat versions 3.4 dated 2020-04-25 and 3.5 dated 2022-09-07
DESCRIPTION | 10 ++++----- MD5 | 46 ++++++++++++++++++++++----------------------- R/cd.R | 3 -- R/cmh.test.R | 2 - R/gini.index.R | 2 - R/j.maad.R | 2 - R/laplace.test.R | 4 --- R/levene.test.R | 2 - R/lnested.test.R | 2 - R/lorenz.curve.R | 2 - R/ltrend.test.R | 2 - R/mma.test.R | 2 - R/neuhauser.hothorn.test.R | 2 - R/nig.parameter.R | 2 - R/rjb.test.R | 2 - R/rlm.test.R | 2 - R/robust.mmm.test.R | 2 - R/rqq.R | 2 - R/runs.test.R | 2 - R/sj.test.R | 2 - R/vgam_extract.R | 2 - build/partial.rdb |binary inst/REFERENCES.bib | 4 +-- man/laplace.test.Rd | 3 -- 24 files changed, 49 insertions(+), 55 deletions(-)
Title: Censored Regression with Conditional Heteroscedasticity
Description: Different approaches to censored or truncated regression with
conditional heteroscedasticity are provided. First, continuous
distributions can be used for the (right and/or left censored or truncated)
response with separate linear predictors for the mean and variance.
Second, cumulative link models for ordinal data
(obtained by interval-censoring continuous data) can be employed for
heteroscedastic extended logistic regression (HXLR). In the latter type of
models, the intercepts depend on the thresholds that define the intervals.
Infrastructure for working with censored or truncated normal, logistic,
and Student-t distributions, i.e., d/p/q/r functions and distributions3
objects.
Author: Jakob Messner [aut, cre] ,
Achim Zeileis [aut] ,
Reto Stauffer [aut]
Maintainer: Jakob Messner <jakob.messner@posteo.net>
Diff between crch versions 1.0-4 dated 2019-09-03 and 1.1-0 dated 2022-09-07
crch-1.0-4/crch/NEWS |only crch-1.1-0/crch/DESCRIPTION | 26 crch-1.1-0/crch/MD5 | 54 - crch-1.1-0/crch/NAMESPACE | 100 ++ crch-1.1-0/crch/NEWS.md |only crch-1.1-0/crch/R/CensoredLogistic.R |only crch-1.1-0/crch/R/CensoredNormal.R |only crch-1.1-0/crch/R/CensoredStudentsT.R |only crch-1.1-0/crch/R/TruncatedLogistic.R |only crch-1.1-0/crch/R/TruncatedNormal.R |only crch-1.1-0/crch/R/TruncatedStudentsT.R |only crch-1.1-0/crch/R/crch.R | 26 crch-1.1-0/crch/R/tlogis.R | 20 crch-1.1-0/crch/build/partial.rdb |binary crch-1.1-0/crch/build/vignette.rds |binary crch-1.1-0/crch/inst/doc/crch.pdf |binary crch-1.1-0/crch/man/CensoredLogistic.Rd |only crch-1.1-0/crch/man/CensoredNormal.Rd |only crch-1.1-0/crch/man/CensoredStudentsT.Rd |only crch-1.1-0/crch/man/TruncatedLogistic.Rd |only crch-1.1-0/crch/man/TruncatedNormal.Rd |only crch-1.1-0/crch/man/TruncatedStudentsT.Rd |only crch-1.1-0/crch/man/clogis.Rd | 6 crch-1.1-0/crch/man/cnorm.Rd | 6 crch-1.1-0/crch/man/crch.Rd | 6 crch-1.1-0/crch/man/crch.boost.Rd | 5 crch-1.1-0/crch/man/ct.Rd | 6 crch-1.1-0/crch/man/predict.crch.Rd | 15 crch-1.1-0/crch/man/tlogis.Rd | 6 crch-1.1-0/crch/man/tnorm.Rd | 6 crch-1.1-0/crch/man/tt.Rd | 6 crch-1.1-0/crch/src/tlogis.c | 16 crch-1.1-0/crch/src/tnorm.c | 16 crch-1.1-0/crch/src/tt.c | 16 crch-1.1-0/crch/tests/Examples/crch-Ex.Rout.save | 841 ++++++++++++++++++++++- 35 files changed, 1073 insertions(+), 104 deletions(-)
Title: Maximum Likelihood Shrinkage using Generalized Ridge or Least
Angle Regression
Description: Functions are provided to calculate and display ridge TRACE Diagnostics for a
variety of alternative Shrinkage Paths. While all methods focus on Maximum Likelihood
estimation of unknown true effects under normal distribution-theory, some estimates are
modified to be Unbiased or to have "Correct Range" when estimating either [1] the noncentrality
of the F-ratio for testing that true Beta coefficients are Zeros or [2] the "relative" MSE
Risk (i.e. MSE divided by true sigma-square, where the "relative" variance of OLS is known.)
The eff.ridge() function implements the "Efficient Shrinkage Path" introduced in Obenchain
(2022) <Open Statistics>. This "p-Parameter" Shrinkage-Path always passes through the
vector of regression coefficient estimates Most-Likely to achieve the overall Optimal
Variance-Bias Trade-Off and is the shortest Path with this property. Functions eff.aug() and
eff.biv() augment the calculations made by eff.ridge() to provide plots of the bivariate
confidence ellips [...truncated...]
Author: Bob Obenchain
Maintainer: Bob Obenchain <wizbob@att.net>
Diff between RXshrink versions 2.1 dated 2022-04-06 and 2.2 dated 2022-09-07
DESCRIPTION | 17 ++--- MD5 | 54 ++++++++-------- NAMESPACE | 12 ++- R/MLfuns.R | 6 - R/RXpredict.R | 2 R/YonX.R | 2 R/aug.lars.R | 2 R/correct.signs.R | 2 R/eff.aug.R | 6 - R/eff.ridge.R | 64 +++++++----------- R/internal.R | 70 ++++++++++++++++++++ R/qm.ridge.R | 162 ++++++++++++++++++++---------------------------- R/uc.lars.R | 2 build/partial.rdb |binary data/longley2.rda |binary data/mpg.rda |binary man/RXpredict.Rd | 2 man/RXshrink-package.Rd | 16 ++-- man/correct.signs.Rd | 2 man/eff.ridge.Rd | 2 man/haldport.Rd | 8 +- man/internal.Rd | 6 + man/longley2.Rd | 2 man/plot.YonX.Rd | 8 +- man/plot.eff.ridge.Rd | 23 ++++-- man/plot.qm.ridge.Rd | 22 ++++-- man/plot.uc.lars.Rd | 7 +- man/qm.ridge.Rd | 2 28 files changed, 277 insertions(+), 224 deletions(-)
Title: Render Sequence Plots using 'ggplot2'
Description: A set of wrapper functions that mainly re-produces some of the
sequence plots rendered with TraMineR::seqplot() and 'TraMineRextras'.
Whereas 'TraMineR' uses base R to produce the plots this library draws on
'ggplot2'. The plots are produced on the basis of a sequence object defined
with TraMineR::seqdef(). The package automates the reshaping and plotting
of sequence data. Resulting plots are of class 'ggplot', i.e. components
can be added and tweaked using '+' and regular 'ggplot2' functions.
Author: Marcel Raab [aut, cre]
Maintainer: Marcel Raab <marcel.raab@gmail.com>
Diff between ggseqplot versions 0.7.2 dated 2022-08-05 and 0.8.0 dated 2022-09-07
ggseqplot-0.7.2/ggseqplot/R/rfplot.R |only ggseqplot-0.7.2/ggseqplot/tests/testthat/test-rfplot.R |only ggseqplot-0.8.0/ggseqplot/DESCRIPTION | 13 ggseqplot-0.8.0/ggseqplot/MD5 | 80 +- ggseqplot-0.8.0/ggseqplot/NAMESPACE | 1 ggseqplot-0.8.0/ggseqplot/NEWS.md | 15 ggseqplot-0.8.0/ggseqplot/R/ggseqdplot.R | 22 ggseqplot-0.8.0/ggseqplot/R/ggseqeplot.R | 3 ggseqplot-0.8.0/ggseqplot/R/ggseqfplot.R | 92 +- ggseqplot-0.8.0/ggseqplot/R/ggseqiplot.R | 32 ggseqplot-0.8.0/ggseqplot/R/ggseqmsplot.R | 12 ggseqplot-0.8.0/ggseqplot/R/ggseqmtplot.R | 11 ggseqplot-0.8.0/ggseqplot/R/ggseqplot-package.R | 1 ggseqplot-0.8.0/ggseqplot/R/ggseqrfplot.R | 401 ++++++++-- ggseqplot-0.8.0/ggseqplot/R/ggseqrplot.R | 1 ggseqplot-0.8.0/ggseqplot/R/ggseqtrplot.R | 438 ++++++------ ggseqplot-0.8.0/ggseqplot/R/internal_helpers.R | 110 +-- ggseqplot-0.8.0/ggseqplot/R/zzz.R |only ggseqplot-0.8.0/ggseqplot/README.md | 10 ggseqplot-0.8.0/ggseqplot/build/partial.rdb |binary ggseqplot-0.8.0/ggseqplot/inst/CITATION |only ggseqplot-0.8.0/ggseqplot/inst/doc/ggseqplot.R | 28 ggseqplot-0.8.0/ggseqplot/inst/doc/ggseqplot.Rmd | 54 + ggseqplot-0.8.0/ggseqplot/inst/doc/ggseqplot.html | 166 +++- ggseqplot-0.8.0/ggseqplot/man/ggseqdplot.Rd | 2 ggseqplot-0.8.0/ggseqplot/man/ggseqeplot.Rd | 3 ggseqplot-0.8.0/ggseqplot/man/ggseqfplot.Rd | 6 ggseqplot-0.8.0/ggseqplot/man/ggseqiplot.Rd | 5 ggseqplot-0.8.0/ggseqplot/man/ggseqmsplot.Rd | 1 ggseqplot-0.8.0/ggseqplot/man/ggseqmtplot.Rd | 1 ggseqplot-0.8.0/ggseqplot/man/ggseqplot-package.Rd | 9 ggseqplot-0.8.0/ggseqplot/man/ggseqrfplot.Rd | 182 +++- ggseqplot-0.8.0/ggseqplot/man/ggseqrplot.Rd | 1 ggseqplot-0.8.0/ggseqplot/man/ggseqtrplot.Rd | 2 ggseqplot-0.8.0/ggseqplot/tests/testthat/test-ggseqdplot.R | 6 ggseqplot-0.8.0/ggseqplot/tests/testthat/test-ggseqeplot.R | 74 -- ggseqplot-0.8.0/ggseqplot/tests/testthat/test-ggseqfplot.R | 5 ggseqplot-0.8.0/ggseqplot/tests/testthat/test-ggseqiplot.R | 6 ggseqplot-0.8.0/ggseqplot/tests/testthat/test-ggseqmsplot.R | 6 ggseqplot-0.8.0/ggseqplot/tests/testthat/test-ggseqmtplot.R | 7 ggseqplot-0.8.0/ggseqplot/tests/testthat/test-ggseqrfplot.R | 42 - ggseqplot-0.8.0/ggseqplot/tests/testthat/test-ggseqtrplot.R | 84 +- ggseqplot-0.8.0/ggseqplot/vignettes/ggseqplot.Rmd | 54 + 43 files changed, 1286 insertions(+), 700 deletions(-)
Title: Decision Analytic Modelling in Health Economics
Description: Classes and functions for modelling health care interventions
using decision trees and semi-Markov models. Mechanisms are provided for
associating an uncertainty distribution with each source variable and for
ensuring transparency of the mathematical relationships between variables.
The package terminology follows Briggs "Decision Modelling for Health
Economic Evaluation" (2006, ISBN:978-0-19-852662-9).
Author: Andrew Sims [aut, cre] ,
Kim Fairbairn [aut] ,
Paola Cognigni [aut]
Maintainer: Andrew Sims <andrew.sims@newcastle.ac.uk>
Diff between rdecision versions 1.1.1 dated 2022-05-10 and 1.1.2 dated 2022-09-07
DESCRIPTION | 8 MD5 | 117 +++---- R/Action.R | 11 R/DecisionTree.R | 292 ++++++++++-------- R/Digraph.R | 92 +++-- R/DirichletDistribution.R | 2 R/ExprModVar.R | 19 - R/Graph.R | 279 ++++++++++------- R/LeafNode.R | 95 ++--- R/MarkovState.R | 89 +---- R/SemiMarkovModel.R | 8 R/utils.R |only README.md | 61 ++- inst/NEWS.md | 32 ++ inst/doc/DT00-DecisionTreeTutorial.html | 511 ++++++++++++++++++++++++++------ inst/doc/DT01-Sumatriptan.html | 259 +++++++++++++++- inst/doc/DT02-Tegaderm.html | 391 +++++++++++++++++++++--- inst/doc/DT03-ShaleGas.html | 259 +++++++++++++++- inst/doc/GT01-NewScientistPuzzle.html | 269 +++++++++++++++- inst/doc/SM01-HIV.html | 360 ++++++++++++++++++++-- man/Action.Rd | 62 +-- man/Arborescence.Rd | 116 +++---- man/Arrow.Rd | 42 +- man/BetaDistribution.Rd | 70 ++-- man/BetaModVar.Rd | 56 +-- man/ChanceNode.Rd | 28 - man/ConstModVar.Rd | 56 +-- man/DecisionNode.Rd | 28 - man/DecisionTree.Rd | 219 +++++++------ man/Digraph.Rd | 143 ++++---- man/DiracDistribution.Rd | 70 ++-- man/DirichletDistribution.Rd | 70 ++-- man/Distribution.Rd | 66 ++-- man/Edge.Rd | 30 - man/EmpiricalDistribution.Rd | 70 ++-- man/ExprModVar.Rd | 116 +++---- man/GammaDistribution.Rd | 70 ++-- man/GammaModVar.Rd | 56 +-- man/Graph.Rd | 262 +++++++++++----- man/LeafNode.Rd | 71 ++-- man/LogNormDistribution.Rd | 70 ++-- man/LogNormModVar.Rd | 56 +-- man/MarkovState.Rd | 67 +--- man/ModVar.Rd | 84 ++--- man/Node.Rd | 24 - man/NormModVar.Rd | 56 +-- man/NormalDistribution.Rd | 66 ++-- man/Reaction.Rd | 62 +-- man/SemiMarkovModel.Rd | 152 ++++----- man/Stack.Rd | 36 +- man/Transition.Rd | 56 +-- tests/testthat/setup.R | 20 - tests/testthat/test-DecisionTree.R | 225 ++++++++++---- tests/testthat/test-Digraph.R | 21 + tests/testthat/test-ExprModVar.R | 6 tests/testthat/test-Graph.R | 59 ++- tests/testthat/test-LeafNode.R | 14 tests/testthat/test-MarkovState.R | 25 - tests/testthat/test-SemiMarkovModel.R | 68 +++- tests/testthat/test-utils.R |only tests/testthat/testthat-problems.rds |only 61 files changed, 4050 insertions(+), 1972 deletions(-)
Title: Extra Methods for Sparse Matrices
Description: Extends sparse matrix and vector classes from the 'Matrix' package by providing:
(a) Methods and operators that work natively on CSR formats (compressed sparse row,
a.k.a. 'RsparseMatrix') such as slicing/sub-setting, assignment, rbind(),
mathematical operators for CSR and COO such as addition ("+") or sqrt(), and methods such as diag();
(b) Multi-threaded matrix multiplication and cross-product for many <sparse, dense> types,
including the 'float32' type from 'float';
(c) Coercion methods between pairs of classes which are not present in 'Matrix',
such as 'dgCMatrix' -> 'ngRMatrix', as well as convenience conversion functions;
(d) Utility functions for sparse matrices such as sorting the indices or removing
zero-valued entries;
(e) Fast transposes that work by outputting in the opposite storage format;
(f) Faster replacements for many 'Matrix' methods for all sparse types, such as
slicing and elementwise multiplication.
(g) Convenience functions for sparse objects, such as 'm [...truncated...]
Author: David Cortes [aut, cre, cph],
Dmitry Selivanov [cph],
Thibaut Goetghebuer-Planchon [cph] ,
Martin Maechler [cph] ,
Robert Gentleman [cph] ,
Ross Ihaka [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between MatrixExtra versions 0.1.12 dated 2022-08-16 and 0.1.13 dated 2022-09-07
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/assignment.R | 2 +- configure | 18 +++++++++--------- configure.ac | 2 +- 5 files changed, 18 insertions(+), 18 deletions(-)
Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of
isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>),
extended isolation forest (Hariri, Kind, Brunner (2018) <arXiv:1811.02141>),
SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>),
fair-cut forest (Cortes (2021) <arXiv:2110:13402>),
robust random-cut forest (Guha, Mishra, Roy, Schrijvers (2016) <http://proceedings.mlr.press/v48/guha16.html>),
and customizable variations of them, for isolation-based outlier detection, clustered outlier detection,
distance or similarity approximation (Cortes (2019) <arXiv:1910.12362>),
isolation kernel calculation (Ting, Zhu, Zhou (2018) <doi:10.1145/3219819.3219990>),
and imputation of missing values (Cortes (2019) <arXiv:1911.06646>),
based on random or guided decision tree splitting, and providing different metrics for
scoring anomalies based on isolation depth or density (Cortes (2021) <arXiv:2111.11639>).
Provides simp [...truncated...]
Author: David Cortes [aut, cre, cph],
Thibaut Goetghebuer-Planchon [cph] ,
David Blackman [cph] ,
Sebastiano Vigna [cph] ,
NumPy Developers [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between isotree versions 0.5.16 dated 2022-08-06 and 0.5.17 dated 2022-09-07
DESCRIPTION | 8 MD5 | 31 - R/helpers.R | 12 R/isoforest.R | 48 + build/vignette.rds |binary configure | 18 configure.ac | 2 inst/doc/An_Introduction_to_Isolation_Forests.html | 625 ++++++++++++--------- man/isolation.forest.Rd | 3 man/isotree.build.indexer.Rd | 4 man/isotree.set.reference.points.Rd | 9 man/isotree.to.sql.Rd | 5 man/predict.isolation_forest.Rd | 9 src/crit.h | 13 src/impute.h | 2 src/robinmap/LICENSE |only src/xoshiro.h | 1 17 files changed, 473 insertions(+), 317 deletions(-)
Title: Functions to Support the ICES Transparent Assessment Framework
Description: Functions to support the ICES Transparent Assessment Framework
<https://taf.ices.dk> to organize data, methods, and results used in ICES
assessments. ICES is an organization facilitating international collaboration
in marine science.
Author: Arni Magnusson [aut],
Colin Millar [aut, cre],
Alexandros Kokkalis [ctb],
Iago Mosqueira [ctb],
Ibrahim Umar [ctb],
Hjalte Parner [ctb]
Maintainer: Colin Millar <colin.millar@ices.dk>
Diff between icesTAF versions 3.6.0 dated 2020-10-19 and 4.0.0 dated 2022-09-07
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-29 1.1.5
2019-02-13 1.1.4
2018-06-27 1.1.3
2017-07-03 1.1.2
2017-02-21 1.1.1
2017-01-16 1.1.0
2016-11-07 1.0.8
2016-10-05 1.0.7
2016-08-10 1.0.6
2016-06-20 1.0.5
Title: Develop a 'Telegram Bot' with R
Description: Provides a pure interface for the 'Telegram Bot API'
<http://core.telegram.org/bots/api>. In addition to the pure API
implementation, it features a number of tools to make the development of
'Telegram' bots with R easy and straightforward, providing an easy-to-use
interface that takes some work off the programmer.
Author: Ernest Benedito [aut, cre],
Chris Stefano [ctb]
Maintainer: Ernest Benedito <ebeneditos@gmail.com>
Diff between telegram.bot versions 2.4.1 dated 2022-08-18 and 3.0.0 dated 2022-09-07
DESCRIPTION | 27 ++++++++++------ MD5 | 39 +++++++++++++---------- NAMESPACE | 6 +++ NEWS.md | 7 ++++ R/base.R | 2 - R/bot.R | 36 ++++++++++++++++----- R/telegram.bot-package.R | 8 +++- R/updater.R | 2 - R/webhook.R |only README.md | 40 ++++++++++++++++++++++-- inst/doc/telegrambot-advanced-filters.html | 4 +- inst/doc/telegrambot-basic-functionalities.html | 4 +- inst/doc/telegrambot-building-a-bot.html | 4 +- inst/doc/telegrambot-introduction.html | 4 +- inst/doc/telegrambot-set-a-proxy.html | 4 +- inst/doc/telegrambot-the-add-operator.html | 4 +- man/Updater.Rd | 2 - man/Webhook.Rd |only man/running.Rd |only man/setWebhook.Rd | 15 ++++++++- man/start_server.Rd |only man/stop_server.Rd |only man/telegram.bot.Rd | 5 +++ 23 files changed, 158 insertions(+), 55 deletions(-)
Title: Archetypes for Targets
Description: Function-oriented Make-like declarative workflows for
Statistics and data science are supported in the 'targets' R package.
As an extension to 'targets', the 'tarchetypes' package provides
convenient user-side functions to make 'targets' easier to use.
By establishing reusable archetypes for common kinds of
targets and pipelines, these functions help express complicated
reproducible workflows concisely and compactly.
The methods in this package were influenced by the 'drake' R package
by Will Landau (2018) <doi:10.21105/joss.00550>.
Author: William Michael Landau [aut, cre]
,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between tarchetypes versions 0.7.0 dated 2022-08-05 and 0.7.1 dated 2022-09-07
DESCRIPTION | 6 +++--- MD5 | 32 ++++++++++++++++---------------- NEWS.md | 5 +++++ R/tar_map.R | 18 ++++++++---------- man/tar_map.Rd | 18 ++++++++---------- man/tar_map2.Rd | 18 ++++++++---------- man/tar_map2_count.Rd | 18 ++++++++---------- man/tar_map2_count_raw.Rd | 18 ++++++++---------- man/tar_map2_raw.Rd | 18 ++++++++---------- man/tar_map2_size.Rd | 18 ++++++++---------- man/tar_map2_size_raw.Rd | 18 ++++++++---------- man/tar_map_rep.Rd | 18 ++++++++---------- man/tar_map_rep_raw.Rd | 18 ++++++++---------- tests/testthat/test-tar_files.R | 7 ++++++- tests/testthat/test-tar_files_input.R | 14 ++++++++++++-- tests/testthat/test-tar_rep2.R | 19 ++++++++++++++++--- tests/testthat/test-tar_rep_map.R | 19 ++++++++++++++++--- 17 files changed, 154 insertions(+), 128 deletions(-)
Title: TAP-Compliant Unit Testing
Description: Concise TAP <http://testanything.org/> compliant unit testing package. Authored tests can be run using CMD check with minimal implementation overhead.
Author: Jamie Lentin [aut, cre],
Anthony Hennessey [aut]
Maintainer: Jamie Lentin <jm@ravingmantis.com>
Diff between unittest versions 1.4-0 dated 2019-11-21 and 1.5-1 dated 2022-09-07
unittest-1.4-0/unittest/NEWS |only unittest-1.5-1/unittest/ChangeLog | 17 ++ unittest-1.5-1/unittest/DESCRIPTION | 11 - unittest-1.5-1/unittest/MD5 | 50 +++--- unittest-1.5-1/unittest/NAMESPACE | 1 unittest-1.5-1/unittest/NEWS.md |only unittest-1.5-1/unittest/R/non_interactive_summary.R | 4 unittest-1.5-1/unittest/R/ok.R | 2 unittest-1.5-1/unittest/R/ok_group.R | 2 unittest-1.5-1/unittest/R/options.R |only unittest-1.5-1/unittest/R/ut_cmp.R | 58 ++++--- unittest-1.5-1/unittest/README.md | 39 ----- unittest-1.5-1/unittest/build/vignette.rds |binary unittest-1.5-1/unittest/inst/doc/faq.R | 31 ---- unittest-1.5-1/unittest/inst/doc/faq.Rmd | 61 ------- unittest-1.5-1/unittest/inst/doc/faq.html | 116 ++++----------- unittest-1.5-1/unittest/inst/doc/getting_started.R | 10 - unittest-1.5-1/unittest/inst/doc/getting_started.html | 79 ++++------ unittest-1.5-1/unittest/inst/doc/testing_packages.R |only unittest-1.5-1/unittest/inst/doc/testing_packages.Rmd |only unittest-1.5-1/unittest/inst/doc/testing_packages.html |only unittest-1.5-1/unittest/man/ok.Rd | 18 ++ unittest-1.5-1/unittest/man/ok_group.Rd | 6 unittest-1.5-1/unittest/man/unittest-package.Rd | 2 unittest-1.5-1/unittest/man/ut_cmp.Rd | 131 ++++++++++------- unittest-1.5-1/unittest/man/ut_cmp_error.Rd | 12 + unittest-1.5-1/unittest/tests/test_options.R |only unittest-1.5-1/unittest/tests/test_ut_cmp.R | 42 +++++ unittest-1.5-1/unittest/vignettes/faq.Rmd | 61 ------- unittest-1.5-1/unittest/vignettes/testing_packages.Rmd |only 30 files changed, 322 insertions(+), 431 deletions(-)
Title: Headless Chrome Web Browser Interface
Description: An implementation of the 'Chrome DevTools Protocol', for controlling a headless Chrome web browser.
Author: Winston Chang [aut, cre],
Barret Schloerke [aut],
RStudio [cph, fnd]
Maintainer: Winston Chang <winston@rstudio.com>
Diff between chromote versions 0.1.0 dated 2022-04-19 and 0.1.1 dated 2022-09-07
DESCRIPTION | 8 +-- MD5 | 16 +++---- NEWS.md | 5 ++ man/Browser.Rd | 36 ++++++++-------- man/Chrome.Rd | 44 +++++++++---------- man/ChromeRemote.Rd | 34 +++++++-------- man/Chromote.Rd | 100 ++++++++++++++++++++++----------------------- man/ChromoteSession.Rd | 96 +++++++++++++++++++++---------------------- man/default_chrome_args.Rd | 8 +-- 9 files changed, 177 insertions(+), 170 deletions(-)
Title: Virtual Machines for R
Description: Manage, provision and use Virtual Machines pre-configured for R.
Develop, test and build package in a clean environment.
'Vagrant' tool and a provider (such as 'Virtualbox') have to be installed.
Author: Jean-Francois Rey [cre, aut]
Maintainer: Jean-Francois Rey <jf.rey.public@gmail.com>
Diff between vmr versions 0.0.4 dated 2022-07-08 and 0.0.5 dated 2022-09-07
DESCRIPTION | 10 - MD5 | 41 ++++--- NAMESPACE | 1 R/vmr-methods.R | 6 - R/vmr.R | 4 inst/doc/O1-workwithvmr.html | 62 ++++++++--- inst/doc/O2-vmrFirstStep.html | 141 +++++++++++++++++---------- inst/doc/O3-vmrManagevmr.html | 187 ++++++++++++++++++++++-------------- inst/doc/O4-vmrManageBoxes.html | 126 +++++++++++++++--------- inst/doc/O5-vmrManageProviders.html | 81 ++++++++++----- inst/doc/O6-vmrDev.html | 96 +++++++++++------- inst/doc/O7-vmrcicd.html | 119 +++++++++++++++------- inst/doc/O8-vmrResume.html | 171 ++++++++++++++++++++------------ inst/doc/vmrPoster.pdf |binary man/virtualboxGitlabRunner.Rd | 2 man/virtualboxOptions.Rd | 8 + man/vmr-package.Rd | 4 man/vmrPackageBuild.Rd | 2 man/vmrPackageCheck.Rd | 2 man/vmrPackageTest.Rd | 2 man/vmrRemoveSnapshot.Rd |only tests/testthat/test_vagrantfile.R | 8 - 22 files changed, 690 insertions(+), 383 deletions(-)
Title: A Framework for Enterprise Shiny Applications
Description: A framework that supports creating and extending enterprise Shiny applications using best practices.
Author: Kamil Zyla [aut, cre],
Jakub Nowicki [aut],
Tymoteusz Makowski [aut],
Marek Rogala [aut],
Appsilon Sp. z o.o. [cph]
Maintainer: Kamil Zyla <kamil@appsilon.com>
Diff between rhino versions 1.1.0 dated 2022-07-12 and 1.1.1 dated 2022-09-07
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/build_js.Rd | 16 ++++++++++++---- man/lint_js.Rd | 4 +++- 4 files changed, 22 insertions(+), 12 deletions(-)
Title: Apply Function to Elements in Parallel using Futures
Description: Implementations of apply(), by(), eapply(), lapply(), Map(), .mapply(), mapply(), replicate(), sapply(), tapply(), and vapply() that can be resolved using any future-supported backend, e.g. parallel on the local machine or distributed on a compute cluster. These future_*apply() functions come with the same pros and cons as the corresponding base-R *apply() functions but with the additional feature of being able to be processed via the future framework.
Author: Henrik Bengtsson [aut, cre, cph],
R Core Team [cph, ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.apply versions 1.9.0 dated 2022-04-25 and 1.9.1 dated 2022-09-07
future.apply-1.9.0/future.apply/NEWS |only future.apply-1.9.0/future.apply/R/rng.R |only future.apply-1.9.0/future.apply/man/make_rng_seeds.Rd |only future.apply-1.9.1/future.apply/DESCRIPTION | 12 - future.apply-1.9.1/future.apply/MD5 | 27 +-- future.apply-1.9.1/future.apply/NEWS.md |only future.apply-1.9.1/future.apply/R/future_lapply.R | 2 future.apply-1.9.1/future.apply/R/future_xapply.R | 2 future.apply-1.9.1/future.apply/R/make_rng_seeds.R |only future.apply-1.9.1/future.apply/R/rng_utils.R |only future.apply-1.9.1/future.apply/R/utils,conditions.R |only future.apply-1.9.1/future.apply/R/utils.R | 12 - future.apply-1.9.1/future.apply/build/vignette.rds |binary future.apply-1.9.1/future.apply/man/future.apply.Rd | 24 ++ future.apply-1.9.1/future.apply/man/future_lapply.Rd | 4 future.apply-1.9.1/future.apply/tests/incl/start,load-only.R | 1 future.apply-1.9.1/future.apply/tests/rng.R | 98 ++++++++++- future.apply-1.9.1/future.apply/tests/stdout.R | 14 - 18 files changed, 144 insertions(+), 52 deletions(-)
Title: R Commander Plug-in for the 'WorldFlora' Package
Description: An R Commander plug-in for the 'WorldFlora' package. It was mainly developed to show work flows and scripts for first-time users.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between RcmdrPlugin.WorldFlora versions 1.1 dated 2020-09-21 and 1.2 dated 2022-09-07
RcmdrPlugin.WorldFlora-1.1/RcmdrPlugin.WorldFlora/inst/doc |only RcmdrPlugin.WorldFlora-1.2/RcmdrPlugin.WorldFlora/DESCRIPTION | 20 ++++++---- RcmdrPlugin.WorldFlora-1.2/RcmdrPlugin.WorldFlora/MD5 | 3 - 3 files changed, 14 insertions(+), 9 deletions(-)
More information about RcmdrPlugin.WorldFlora at CRAN
Permanent link
Title: Geospatial Regression Equation for European Nutrient Losses
(GREEN)
Description: Tools and methods to apply the model Geospatial Regression Equation
for European Nutrient losses (GREEN);
Grizzetti et al. (2005) <doi:10.1016/j.jhydrol.2004.07.036>;
Grizzetti et al. (2008);
Grizzetti et al. (2012) <doi:10.1111/j.1365-2486.2011.02576.x>;
Grizzetti et al. (2021) <doi:10.1016/j.gloenvcha.2021.102281>.
Author: A. Udias [aut],
B. Grizzetti [aut],
O. Vigiak [aut],
J. Gomez [aut],
C. Alfaro [aut, cre],
A. Aloe [aut]
Maintainer: C. Alfaro <c.alfarog@gmail.com>
Diff between GREENeR versions 0.1.0 dated 2022-01-27 and 0.1.1 dated 2022-09-07
GREENeR-0.1.0/GREENeR/README.md |only GREENeR-0.1.0/GREENeR/man/nut_balance.Rd |only GREENeR-0.1.1/GREENeR/DESCRIPTION | 10 GREENeR-0.1.1/GREENeR/MD5 | 39 - GREENeR-0.1.1/GREENeR/NAMESPACE | 7 GREENeR-0.1.1/GREENeR/NEWS.md | 6 GREENeR-0.1.1/GREENeR/R/rgreen.R | 187 +++++ GREENeR-0.1.1/GREENeR/R/rgreen_plots.R | 65 +- GREENeR-0.1.1/GREENeR/build/partial.rdb |binary GREENeR-0.1.1/GREENeR/build/vignette.rds |binary GREENeR-0.1.1/GREENeR/inst/doc/GREENeR.R | 2 GREENeR-0.1.1/GREENeR/inst/doc/GREENeR.Rmd | 4 GREENeR-0.1.1/GREENeR/inst/doc/GREENeR.html | 750 ++++++++++++++++++++---- GREENeR-0.1.1/GREENeR/man/N4_sankey.Rd | 2 GREENeR-0.1.1/GREENeR/man/aggregate_loop.Rd | 4 GREENeR-0.1.1/GREENeR/man/calib_dot.Rd | 4 GREENeR-0.1.1/GREENeR/man/figures/logo.png |only GREENeR-0.1.1/GREENeR/man/read_NSdata.Rd |only GREENeR-0.1.1/GREENeR/man/read_geometry.Rd |only GREENeR-0.1.1/GREENeR/man/region_nut_balance.Rd |only GREENeR-0.1.1/GREENeR/man/select_params.Rd | 4 GREENeR-0.1.1/GREENeR/man/shreve.Rd |only GREENeR-0.1.1/GREENeR/man/simobs_annual_plot.Rd | 9 GREENeR-0.1.1/GREENeR/vignettes/GREENeR.Rmd | 4 24 files changed, 906 insertions(+), 191 deletions(-)
Title: Predict and Visualize Population-Level Changes in Allele
Frequencies in Response to Climate Change
Description: Methods (<doi:10.7717/peerj.11534>) are provided of calibrating and predicting shifts in allele frequencies through redundancy analysis ('vegan::rda()') and generalized additive models ('mgcv::gam()'). Visualization functions for predicted changes in allele frequencies include 'shift.dot.ggplot()', 'shift.pie.ggplot()', 'shift.moon.ggplot()', 'shift.waffle.ggplot()' and 'shift.surf.ggplot()' that are made with input data sets that are prepared by helper functions for each visualization method. Examples in the documentation show how to prepare animated climate change graphics through a time series with the 'gganimate' package. Function 'amova.rda()' shows how Analysis of Molecular Variance can be directly conducted with the results from redundancy analysis.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between AlleleShift versions 1.0-2 dated 2021-08-14 and 1.1 dated 2022-09-07
DESCRIPTION | 14 +++++++------- MD5 | 6 +++--- build/partial.rdb |binary inst/ChangeLog | 6 ++++++ 4 files changed, 16 insertions(+), 10 deletions(-)
Title: Standardize Plant Names According to World Flora Online
Taxonomic Backbone
Description: World Flora Online is an online flora of all known plants, available from <http://www.worldfloraonline.org/>. Methods are provided of matching a list of plant names (scientific names, taxonomic names, botanical names) against a static copy of the World Flora Online Taxonomic Backbone data that can be downloaded from the World Flora Online website. The World Flora Online Taxonomic Backbone is an updated version of The Plant List (<http://www.theplantlist.org/>), a working list of plant names that has become static since 2013.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>
Diff between WorldFlora versions 1.10 dated 2021-12-21 and 1.11 dated 2022-09-07
DESCRIPTION | 12 - MD5 | 14 +- R/WFO.match.R | 2 R/WFO.prepare.R | 354 +++++++++++++++++++++++++++--------------------------- R/WFO.url.R | 48 +++---- build/partial.rdb |binary inst/ChangeLog | 24 +++ man/WFO.match.Rd | 4 8 files changed, 239 insertions(+), 219 deletions(-)
Title: Variance Component Analysis
Description: ANOVA and REML estimation of linear mixed models is implemented, once following
Searle et al. (1991, ANOVA for unbalanced data), once making use of the 'lme4' package.
The primary objective of this package is to perform a variance component analysis (VCA)
according to CLSI EP05-A3 guideline "Evaluation of Precision of Quantitative Measurement
Procedures" (2014). There are plotting methods for visualization of an experimental design,
plotting random effects and residuals. For ANOVA type estimation two methods for computing
ANOVA mean squares are implemented (SWEEP and quadratic forms). The covariance matrix of
variance components can be derived, which is used in estimating confidence intervals. Linear
hypotheses of fixed effects and LS means can be computed. LS means can be computed at specific
values of covariables and with custom weighting schemes for factor variables. See ?VCA for a
more comprehensive description of the features.
Author: Andre Schuetzenmeister [aut, cre], Florian Dufey [aut]
Maintainer: Andre Schuetzenmeister <andre.schuetzenmeister@roche.com>
Diff between VCA versions 1.4.4 dated 2022-08-31 and 1.4.5 dated 2022-09-07
DESCRIPTION | 8 MD5 | 32 +- R/anova.R | 6 R/plot.R | 78 ++--- R/utils.R | 1 R/vca.R | 3 inst/UnitTests/VCA_UnitTest_Protocol.html | 6 inst/UnitTests/VCA_UnitTest_Protocol.txt | 330 +++++++++++------------ inst/doc/VCA_package_vignette.html | 16 - man/VCA-Package.Rd | 4 man/varPlot.Rd | 58 ++-- vignettes/figures/Multi_Site_Design_1_Plot-1.png |binary vignettes/figures/Multi_Site_Design_2_Plot-1.png |binary vignettes/figures/WithinLab_Example_plot-1.png |binary vignettes/figures/varPlot_Outlier-1.png |binary vignettes/figures/varPlot_full-1.png |binary vignettes/figures/varPlot_plain-1.png |binary 17 files changed, 276 insertions(+), 266 deletions(-)
Title: Handle Ambiguity of Protein Identifications from Shotgun
Proteomics
Description: In shotgun proteomics, shared peptides (i.e., peptides that might
originate from different proteins sharing homology, from different
proteoforms due to alternative mRNA splicing, post-translational
modifications, proteolytic cleavages, and/or allelic variants) represent a
major source of ambiguity in protein identifications. The 'net4pg' package
allows to assess and handle ambiguity of protein identifications. It
implements methods for two main applications. First, it allows to represent
and quantify ambiguity of protein identifications by means of graph
connected components (CCs). In graph theory, CCs are defined as the largest
subgraphs in which any two vertices are connected to each other by a path
and not connected to any other of the vertices in the supergraph. Here,
proteins sharing one or more peptides are thus gathered in the same CC
(multi-protein CC), while unambiguous protein identifications constitute CCs
with a single protein vertex (single-protein CCs). Therefore, the pro [...truncated...]
Author: Laura Fancello [aut, cre] ,
Thomas Burger [aut, ctb]
Maintainer: Laura Fancello <laura.fancello@gmail.com>
Diff between net4pg versions 0.1.0 dated 2021-09-20 and 0.1.1 dated 2022-09-07
net4pg-0.1.0/net4pg/NEWS.md |only net4pg-0.1.1/net4pg/DESCRIPTION | 14 net4pg-0.1.1/net4pg/MD5 | 14 net4pg-0.1.1/net4pg/build/vignette.rds |binary net4pg-0.1.1/net4pg/inst/NEWS.Rd |only net4pg-0.1.1/net4pg/inst/doc/Intro_To_net4pg.R | 2 net4pg-0.1.1/net4pg/inst/doc/Intro_To_net4pg.Rmd | 358 +++++--- net4pg-0.1.1/net4pg/inst/doc/Intro_To_net4pg.html | 938 ++++++++++++++++++---- net4pg-0.1.1/net4pg/vignettes/Intro_To_net4pg.Rmd | 358 +++++--- 9 files changed, 1317 insertions(+), 367 deletions(-)
Title: Call the 'NaPTAN' API Through R
Description: An R wrapper for pulling data from the National Public Transport Access Nodes ('NaPTAN') API (<https://www.api.gov.uk/dft/national-public-transport-access-nodes-naptan-api/#national-public-transport-access-nodes-naptan-api>). This allows users to download 'NaPTAN' transport information, for the full dataset, by ATCO region code, or by name of region.
Author: Tom Westlake [aut],
Francesca Bryden [aut, cre],
Sara Smith [aut]
Maintainer: Francesca Bryden <francesca.bryden@dft.gov.uk>
Diff between naptanr versions 1.0.0 dated 2022-08-13 and 1.0.1 dated 2022-09-07
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat/testcall_naptan.R | 10 +++++++--- 3 files changed, 12 insertions(+), 8 deletions(-)
Title: Integer Sequence Generator
Description: Generates well-known integer sequences. 'gmp' package is adopted for computing with arbitrarily large numbers. Every function has hyperlink to its corresponding item in OEIS (The On-Line Encyclopedia of Integer Sequences) in the function help page. For interested readers, see Sloane and Plouffe (1995, ISBN:978-0125586306).
Author: Kisung You [aut, cre]
Maintainer: Kisung You <kisungyou@outlook.com>
Diff between Zseq versions 0.2.0 dated 2018-02-02 and 0.2.1 dated 2022-09-07
DESCRIPTION | 17 ++++++++--------- LICENSE |only MD5 | 27 +++++++++++++++------------ NAMESPACE | 2 ++ NEWS.md |only R/Deficient.R | 4 +++- R/Factorial.Double.R | 6 ++++-- R/Fibonacci.R | 4 ++-- R/Perfect.R | 2 ++ R/package-Zseq.R | 6 ++---- R/zzz.R |only man/A000045.Rd | 4 ++-- man/A000165.Rd | 6 ++++-- man/A000396.Rd | 2 ++ man/A005100.Rd | 4 +++- man/Zseq-package.Rd | 2 +- 16 files changed, 50 insertions(+), 36 deletions(-)
Title: Sketching of Data via Random Subspace Embeddings
Description: Construct sketches of data via random subspace embeddings.
For more details, see the following papers.
Lee, S. and Ng, S. (2022). "Least Squares Estimation Using Sketched Data with Heteroskedastic Errors," Proceedings of the 39th International Conference on Machine Learning (ICML22), 162:12498-12520.
Lee, S. and Ng, S. (2020). "An Econometric Perspective on Algorithmic Subsampling," Annual Review of Economics, 12(1): 45–80.
Author: Sokbae Lee [aut, cre],
Serena Ng [aut]
Maintainer: Sokbae Lee <sl3841@columbia.edu>
Diff between sketching versions 0.1.1 dated 2022-08-31 and 0.1.2 dated 2022-09-07
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NAMESPACE | 5 ++--- NEWS.md | 4 ++-- 4 files changed, 11 insertions(+), 12 deletions(-)
Title: Visual Model Checking for Nonlinear Mixed Effect Model
Description: Various visual and numerical diagnosis methods for the nonlinear mixed effect model, including visual predictive checks, numerical predictive checks, and coverage plot (Karlsson and Holford, 2008, <https://www.page-meeting.org/?abstract=1434>).
Author: Eun-Kyung Lee [aut, cre],
Eun-Hwa Kang [aut]
Maintainer: Eun-Kyung Lee <lee.eunk@gmail.com>
Diff between nlmeVPC versions 2.2 dated 2021-11-04 and 2.3 dated 2022-09-07
DESCRIPTION | 15 + MD5 | 64 ++++---- NAMESPACE | 4 R/BootVPC.R | 202 +++++++++++++------------ R/FindBestCut.R | 84 +++++----- R/Misc.R | 69 ++++---- R/NumericalCheck.R | 257 +++++++++++++++++---------------- R/VPCgraph.R | 304 +++++++++++++++++++-------------------- R/aqrVPC.R | 171 ++++++++++++--------- R/asVPC.R | 358 +++++++++++++++++++++++----------------------- R/coverage.R | 151 ++++++++----------- R/coverageDetailplot.R | 108 ++++++------- R/makeCOVbin.R | 51 +++--- R/optK.R | 92 +++++------ R/quantVPC.R | 124 ++++++++------- data/origdata.rda |binary data/simdata.rda |binary man/FindBestCut.Rd | 4 man/NumericalCheck.Rd | 32 ++-- man/VPCgraph.Rd | 48 +++--- man/aqrVPC.Rd | 11 - man/asVPC.Rd | 49 +++--- man/bootVPC.Rd | 39 ++--- man/coverageDetailplot.Rd | 34 ++-- man/coverageplot.Rd | 34 ++-- man/findQuantile.Rd | 4 man/findSIMQuantile.Rd | 10 - man/makeCOVbin.Rd | 8 - man/optK.Rd | 14 - man/quantVPC.Rd | 31 +-- tests |only 31 files changed, 1219 insertions(+), 1153 deletions(-)
Title: Group Subset Selection
Description: Provides tools for sparse regression modelling with grouped predictors using the group
subset selection penalty. Uses coordinate descent and local search algorithms to rapidly deliver
near optimal estimates. The group subset penalty can be combined with a group lasso or ridge
penalty for added shrinkage. Linear and logistic regression are supported, as are overlapping
groups.
Author: Ryan Thompson [aut, cre]
Maintainer: Ryan Thompson <ryan.thompson1@unsw.edu.au>
Diff between grpsel versions 1.3.0 dated 2022-06-18 and 1.3.1 dated 2022-09-07
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NEWS.md | 3 +++ build/vignette.rds |binary inst/CITATION | 8 ++++---- inst/doc/vignette.html | 13 ++++++++++--- 6 files changed, 28 insertions(+), 18 deletions(-)
Title: 'R Markdown' Format for Scientific and Technical Writing
Description: Scientific and technical article format for the web.
'Distill' articles feature attractive, reader-friendly typography,
flexible layout options for visualizations, and full support for
footnotes and citations.
Author: Christophe Dervieux [aut, cre]
,
JJ Allaire [aut] ,
Rich Iannone [aut],
Alison Presmanes Hill [aut] ,
Yihui Xie [aut] ,
RStudio, PBC [cph, fnd],
Google LLC [ctb, cph] ,
Nick Williams [ctb, cph] ,
Denis Demchenko [ctb, cph] ,
The Polymer Authors [ctb, [...truncated...]
Maintainer: Christophe Dervieux <cderv@rstudio.com>
Diff between distill versions 1.4 dated 2022-05-12 and 1.5 dated 2022-09-07
DESCRIPTION | 10 MD5 | 159 NAMESPACE | 32 NEWS.md | 263 R/appendices.R | 629 +- R/collections.R | 2022 +++---- R/create.R | 888 +-- R/dependencies.R | 192 R/distill-package.R | 12 R/distill_article.R | 957 +-- R/distill_website.R | 452 - R/import.R | 878 +-- R/listing.R | 742 +- R/manifest.R | 94 R/metadata.R | 1755 +++--- R/navigation.R | 778 +- R/placeholders.R | 70 R/publish.R | 240 R/reexports.R | 2 R/rstudio.R | 174 R/site_includes.R | 306 - R/sitemap.R | 664 +- R/theme.R | 70 R/utils.R | 680 +- R/whoami.R | 172 inst/examples/distill-interactive-document.Rmd | 62 inst/examples/distill-interactive-document.html | 2028 +++---- inst/examples/radix-interactive-document.html | 2032 +++---- inst/rmarkdown/templates/distill_article/resources/alt-format.html | 12 inst/rmarkdown/templates/distill_article/resources/arrow.theme | 428 - inst/rmarkdown/templates/distill_article/resources/base-style.css | 308 - inst/rmarkdown/templates/distill_article/resources/base-variables.css | 156 inst/rmarkdown/templates/distill_article/resources/biblio.html | 8 inst/rmarkdown/templates/distill_article/resources/default.html | 278 - inst/rmarkdown/templates/distill_article/resources/distill.html | 2693 +++++----- inst/rmarkdown/templates/distill_article/resources/footer.html | 10 inst/rmarkdown/templates/distill_article/resources/listing.html | 262 inst/rmarkdown/templates/distill_article/resources/navbar.html | 682 +- inst/rmarkdown/templates/distill_article/resources/rstudio.theme | 380 - inst/rmarkdown/templates/distill_article/resources/search.html | 512 - inst/rmarkdown/templates/distill_article/skeleton/skeleton.Rmd | 50 inst/rmarkdown/templates/distill_article/template.yaml | 8 inst/rstudio/templates/project/blog.dcf | 32 inst/rstudio/templates/project/blog/_site.yml | 24 inst/rstudio/templates/project/blog/about.Rmd | 18 inst/rstudio/templates/project/blog/index.Rmd | 10 inst/rstudio/templates/project/blog/welcome.Rmd | 62 inst/rstudio/templates/project/website.dcf | 32 inst/rstudio/templates/project/website/_site.yml | 24 inst/rstudio/templates/project/website/about.Rmd | 20 inst/rstudio/templates/project/website/index.Rmd | 40 inst/www/anchor/anchor.min.js | 16 inst/www/autocomplete/autocomplete.min.js | 12 inst/www/bowser/bowser.min.js | 10 inst/www/distill/template.v2.js | 1488 ++--- inst/www/fuse/fuse.min.js | 16 inst/www/headroom/headroom.min.js | 12 inst/www/iframe-resizer/iframeResizer.contentWindow.min.js | 18 inst/www/iframe-resizer/iframeResizer.min.js | 16 inst/www/popper/popper.min.js | 12 inst/www/tippy/tippy-bundle.umd.min.js | 4 inst/www/tippy/tippy.umd.min.js | 4 inst/www/webcomponents/webcomponents.js | 472 - man/create_article.Rd | 62 man/create_post.Rd | 100 man/create_theme.Rd | 102 man/create_website.Rd | 68 man/distill-package.Rd | 90 man/distill_article.Rd | 237 man/distill_website.Rd | 36 man/import_post.Rd | 92 man/publish_website.Rd | 96 man/rename_post_dir.Rd | 68 man/rmd-fragments/apply-theme.Rmd | 50 tests/testthat.R | 8 tests/testthat/helpers.R | 86 tests/testthat/test-collections.R | 24 tests/testthat/test-create.R | 60 tests/testthat/test-distill_article.R | 10 tests/testthat/test-metadata.R |only tests/testthat/test-theme.R | 12 81 files changed, 12863 insertions(+), 12830 deletions(-)
Title: Statistical Modelling for Asymmetric Exponential Power
Distribution
Description: Developed for Computing the probability density function, cumulative
distribution function, random generation, estimating the parameters of asymmetric
exponential power distribution, and robust regression analysis with error
term that follows asymmetric exponential power distribution. The asymmetric
exponential power distribution studied here is a special case of that introduced
by Dongming and Zinde-Walsh (2009) <doi:10.1016/j.jeconom.2008.09.038>.
Author: Mahdi Teimouri [aut, cre, cph, ctb]
Maintainer: Mahdi Teimouri <teimouri@aut.ac.ir>
Diff between AEP versions 0.1.2 dated 2020-08-12 and 0.1.4 dated 2022-09-07
DESCRIPTION | 22 +++++++++++++--------- MD5 | 18 ++++++++++-------- data |only man/daep.Rd | 21 ++++++++++++--------- man/fitaep.Rd | 12 ++---------- man/paep.Rd | 21 +++++++++------------ man/plasma.Rd |only man/qaep.Rd | 28 ++++++++++++++++------------ man/raep.Rd | 21 ++++++--------------- man/regaep.Rd | 18 +++++------------- man/welcome.Rd | 12 ------------ 11 files changed, 73 insertions(+), 100 deletions(-)
Title: Internationalization Data from the 'Unicode CLDR' in Tabular
Form
Description: Up-to-date data from the 'Unicode CLDR Project' (where 'CLDR'
stands for 'Common Locale Data Repository') are available here as a series
of easy-to-parse datasets. Several functions are provided for extracting
key elements from the tabular datasets.
Author: Richard Iannone [aut, cre]
Maintainer: Richard Iannone <riannone@me.com>
Diff between i18n versions 0.1.0 dated 2022-03-29 and 0.2.0 dated 2022-09-07
i18n-0.1.0/i18n/R/sysdata.rda |only i18n-0.1.0/i18n/README.md |only i18n-0.2.0/i18n/DESCRIPTION | 9 i18n-0.2.0/i18n/MD5 | 89 +++-- i18n-0.2.0/i18n/NEWS.md | 4 i18n-0.2.0/i18n/R/aaa.R |only i18n-0.2.0/i18n/R/datasets.R | 289 +++++++++++++++++-- i18n-0.2.0/i18n/R/get_values.R | 260 ++++++++--------- i18n-0.2.0/i18n/data/all_currency_codes.rda |binary i18n-0.2.0/i18n/data/all_locales.rda |binary i18n-0.2.0/i18n/data/character_labels.rda |binary i18n-0.2.0/i18n/data/characters.rda |binary i18n-0.2.0/i18n/data/currencies.rda |binary i18n-0.2.0/i18n/data/dates.rda |binary i18n-0.2.0/i18n/data/dates_generic.rda |only i18n-0.2.0/i18n/data/day_periods.rda |only i18n-0.2.0/i18n/data/default_locales.rda |binary i18n-0.2.0/i18n/data/delimiters.rda |only i18n-0.2.0/i18n/data/layout.rda |only i18n-0.2.0/i18n/data/locale_names.rda |binary i18n-0.2.0/i18n/data/numbers.rda |binary i18n-0.2.0/i18n/data/script_metadata.rda |only i18n-0.2.0/i18n/data/tz_bcp_id.rda |only i18n-0.2.0/i18n/data/tz_exemplar.rda |only i18n-0.2.0/i18n/data/tz_formats.rda |only i18n-0.2.0/i18n/data/tz_map.rda |only i18n-0.2.0/i18n/data/tz_metazone_names.rda |only i18n-0.2.0/i18n/data/tz_metazone_users.rda |only i18n-0.2.0/i18n/data/units.rda |only i18n-0.2.0/i18n/man/all_currency_codes.Rd | 4 i18n-0.2.0/i18n/man/all_locales.Rd | 4 i18n-0.2.0/i18n/man/character_labels.Rd | 4 i18n-0.2.0/i18n/man/characters.Rd | 4 i18n-0.2.0/i18n/man/cldr_character_labels.Rd | 2 i18n-0.2.0/i18n/man/cldr_characters.Rd | 2 i18n-0.2.0/i18n/man/cldr_currencies.Rd | 12 i18n-0.2.0/i18n/man/cldr_dates.Rd | 2 i18n-0.2.0/i18n/man/cldr_locale_names.Rd | 4 i18n-0.2.0/i18n/man/cldr_numbers.Rd | 2 i18n-0.2.0/i18n/man/currencies.Rd | 4 i18n-0.2.0/i18n/man/dates.Rd | 15 i18n-0.2.0/i18n/man/dates_generic.Rd |only i18n-0.2.0/i18n/man/day_periods.Rd |only i18n-0.2.0/i18n/man/default_locales.Rd | 4 i18n-0.2.0/i18n/man/delimiters.Rd |only i18n-0.2.0/i18n/man/element_lists.Rd | 19 - i18n-0.2.0/i18n/man/layout.Rd |only i18n-0.2.0/i18n/man/locale_names.Rd | 12 i18n-0.2.0/i18n/man/numbers.Rd | 6 i18n-0.2.0/i18n/man/script_metadata.Rd |only i18n-0.2.0/i18n/man/tz_bcp_id.Rd |only i18n-0.2.0/i18n/man/tz_exemplar.Rd |only i18n-0.2.0/i18n/man/tz_formats.Rd |only i18n-0.2.0/i18n/man/tz_map.Rd |only i18n-0.2.0/i18n/man/tz_metazone_names.Rd |only i18n-0.2.0/i18n/man/tz_metazone_users.Rd |only i18n-0.2.0/i18n/man/units.Rd |only i18n-0.2.0/i18n/tests/testthat/test-cldr_functions.R | 1 i18n-0.2.0/i18n/tests/testthat/test-datasets.R | 46 ++- 59 files changed, 569 insertions(+), 229 deletions(-)
Title: Self-Tuning Data Adaptive Matrix Imputation
Description: Implements the AdaptiveImpute matrix completion
algorithm of 'Intelligent Initialization and Adaptive Thresholding for
Iterative Matrix Completion',
<https://amstat.tandfonline.com/doi/abs/10.1080/10618600.2018.1518238>.
AdaptiveImpute is useful for embedding sparsely observed matrices,
often out performs competing matrix completion algorithms, and
self-tunes its hyperparameter, making usage easy.
Author: Alex Hayes [aut, cre, cph] ,
Juhee Cho [aut],
Donggyu Kim [aut],
Karl Rohe [aut]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between fastadi versions 0.1.0 dated 2022-02-11 and 0.1.1 dated 2022-09-07
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NEWS.md |only R/adaptive-impute.R | 2 +- R/citation-impute.R | 2 +- README.md | 1 + man/adaptive_impute.Rd | 2 +- man/citation_impute.Rd | 2 +- tests/testthat/test-masked_approximation.R | 4 ++-- 9 files changed, 19 insertions(+), 17 deletions(-)
Title: Probability Distributions as S3 Objects
Description: Tools to create and manipulate probability distributions
using S3. Generics pdf(), cdf(), quantile(), and random() provide
replacements for base R's d/p/q/r style functions. Functions and
arguments have been named carefully to minimize confusion for students
in intro stats courses. The documentation for each distribution
contains detailed mathematical notes.
Author: Alex Hayes [aut, cre] ,
Ralph Moller-Trane [aut],
Emil Hvitfeldt [ctb] ,
Daniel Jordan [aut],
Paul Northrop [aut],
Moritz N. Lang [aut] ,
Achim Zeileis [aut] ,
Bruna Wundervald [ctb],
Alessandro Gasparini [ctb]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between distributions3 versions 0.2.0 dated 2022-06-21 and 0.2.1 dated 2022-09-07
distributions3-0.2.0/distributions3/man/likelihood.Rd |only distributions3-0.2.1/distributions3/DESCRIPTION | 12 distributions3-0.2.1/distributions3/MD5 | 452 +++++----- distributions3-0.2.1/distributions3/NAMESPACE | 142 +++ distributions3-0.2.1/distributions3/NEWS.md | 47 + distributions3-0.2.1/distributions3/R/Bernoulli.R | 56 - distributions3-0.2.1/distributions3/R/Beta.R | 56 - distributions3-0.2.1/distributions3/R/Binomial.R | 55 - distributions3-0.2.1/distributions3/R/Categorical.R | 12 distributions3-0.2.1/distributions3/R/Cauchy.R | 55 - distributions3-0.2.1/distributions3/R/ChiSquare.R | 57 - distributions3-0.2.1/distributions3/R/Erlang.R | 56 - distributions3-0.2.1/distributions3/R/Exponential.R | 55 - distributions3-0.2.1/distributions3/R/FisherF.R | 56 - distributions3-0.2.1/distributions3/R/Frechet.R | 66 + distributions3-0.2.1/distributions3/R/Gamma.R | 56 - distributions3-0.2.1/distributions3/R/GeneralisedExtremeValue.R | 68 + distributions3-0.2.1/distributions3/R/GeneralisedPareto.R | 67 + distributions3-0.2.1/distributions3/R/Geometric.R | 56 - distributions3-0.2.1/distributions3/R/Gumbel.R | 66 + distributions3-0.2.1/distributions3/R/HurdleNegativeBinomial.R |only distributions3-0.2.1/distributions3/R/HurdlePoisson.R | 71 + distributions3-0.2.1/distributions3/R/HyperGeometric.R | 54 - distributions3-0.2.1/distributions3/R/LogNormal.R | 55 - distributions3-0.2.1/distributions3/R/Logistic.R | 55 - distributions3-0.2.1/distributions3/R/Multinomial.R | 12 distributions3-0.2.1/distributions3/R/NegativeBinomial.R | 58 - distributions3-0.2.1/distributions3/R/Normal.R | 56 - distributions3-0.2.1/distributions3/R/Poisson.R | 58 - distributions3-0.2.1/distributions3/R/ReversedWeibull.R | 56 - distributions3-0.2.1/distributions3/R/StudentsT.R | 55 - distributions3-0.2.1/distributions3/R/Tukey.R | 65 + distributions3-0.2.1/distributions3/R/Uniform.R | 55 - distributions3-0.2.1/distributions3/R/Weibull.R | 55 - distributions3-0.2.1/distributions3/R/ZINegativeBinomial.R |only distributions3-0.2.1/distributions3/R/ZIPoisson.R | 61 - distributions3-0.2.1/distributions3/R/ZTNegativeBinomial.R |only distributions3-0.2.1/distributions3/R/ZTPoisson.R |only distributions3-0.2.1/distributions3/R/is_discrete.R |only distributions3-0.2.1/distributions3/R/methods.R | 172 ++- distributions3-0.2.1/distributions3/R/prodist.R | 128 ++ distributions3-0.2.1/distributions3/R/utils.R | 43 distributions3-0.2.1/distributions3/README.md | 11 distributions3-0.2.1/distributions3/build/partial.rdb |binary distributions3-0.2.1/distributions3/build/vignette.rds |binary distributions3-0.2.1/distributions3/inst/doc/one-sample-sign-tests.html | 13 distributions3-0.2.1/distributions3/inst/doc/one-sample-t-confidence-interval.html | 13 distributions3-0.2.1/distributions3/inst/doc/one-sample-t-test.html | 13 distributions3-0.2.1/distributions3/inst/doc/one-sample-z-confidence-interval.html | 13 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distributions3-0.2.1/distributions3/man/cdf.Weibull.Rd | 9 distributions3-0.2.1/distributions3/man/cdf.ZINegativeBinomial.Rd |only distributions3-0.2.1/distributions3/man/cdf.ZIPoisson.Rd | 10 distributions3-0.2.1/distributions3/man/cdf.ZTNegativeBinomial.Rd |only distributions3-0.2.1/distributions3/man/cdf.ZTPoisson.Rd |only distributions3-0.2.1/distributions3/man/distributions3-package.Rd | 2 distributions3-0.2.1/distributions3/man/fit_mle.Rd | 11 distributions3-0.2.1/distributions3/man/geom_auc.Rd | 16 distributions3-0.2.1/distributions3/man/hnbinom.Rd |only distributions3-0.2.1/distributions3/man/hpois.Rd | 2 distributions3-0.2.1/distributions3/man/is_discrete.Rd |only distributions3-0.2.1/distributions3/man/log_likelihood.Rd | 23 distributions3-0.2.1/distributions3/man/pdf.Bernoulli.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.Beta.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.Binomial.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.Cauchy.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.ChiSquare.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.Erlang.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.Exponential.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.FisherF.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.Frechet.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.GEV.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.GP.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.Gamma.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.Geometric.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.Gumbel.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.HurdleNegativeBinomial.Rd |only distributions3-0.2.1/distributions3/man/pdf.HurdlePoisson.Rd | 14 distributions3-0.2.1/distributions3/man/pdf.HyperGeometric.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.LogNormal.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.Logistic.Rd | 11 distributions3-0.2.1/distributions3/man/pdf.NegativeBinomial.Rd | 11 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distributions3-0.2.1/distributions3/man/quantile.ChiSquare.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.Erlang.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.Exponential.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.FisherF.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.Frechet.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.GEV.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.GP.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.Gamma.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.Geometric.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.Gumbel.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.HurdleNegativeBinomial.Rd |only distributions3-0.2.1/distributions3/man/quantile.HurdlePoisson.Rd | 12 distributions3-0.2.1/distributions3/man/quantile.HyperGeometric.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.LogNormal.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.Logistic.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.NegativeBinomial.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.Normal.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.Poisson.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.RevWeibull.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.StudentsT.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.Tukey.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.Uniform.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.Weibull.Rd | 9 distributions3-0.2.1/distributions3/man/quantile.ZINegativeBinomial.Rd |only distributions3-0.2.1/distributions3/man/quantile.ZIPoisson.Rd | 10 distributions3-0.2.1/distributions3/man/quantile.ZTNegativeBinomial.Rd |only distributions3-0.2.1/distributions3/man/quantile.ZTPoisson.Rd |only distributions3-0.2.1/distributions3/man/random.HurdleNegativeBinomial.Rd |only distributions3-0.2.1/distributions3/man/random.HurdlePoisson.Rd | 3 distributions3-0.2.1/distributions3/man/random.Rd | 33 distributions3-0.2.1/distributions3/man/random.Tukey.Rd |only distributions3-0.2.1/distributions3/man/random.ZINegativeBinomial.Rd |only distributions3-0.2.1/distributions3/man/random.ZIPoisson.Rd | 1 distributions3-0.2.1/distributions3/man/random.ZTNegativeBinomial.Rd |only distributions3-0.2.1/distributions3/man/random.ZTPoisson.Rd |only distributions3-0.2.1/distributions3/man/suff_stat.Rd | 13 distributions3-0.2.1/distributions3/man/support.Bernoulli.Rd | 4 distributions3-0.2.1/distributions3/man/support.Beta.Rd | 4 distributions3-0.2.1/distributions3/man/support.Binomial.Rd | 4 distributions3-0.2.1/distributions3/man/support.Cauchy.Rd | 4 distributions3-0.2.1/distributions3/man/support.ChiSquare.Rd | 4 distributions3-0.2.1/distributions3/man/support.Erlang.Rd | 4 distributions3-0.2.1/distributions3/man/support.Exponential.Rd | 4 distributions3-0.2.1/distributions3/man/support.FisherF.Rd | 4 distributions3-0.2.1/distributions3/man/support.Frechet.Rd |only distributions3-0.2.1/distributions3/man/support.GEV.Rd |only distributions3-0.2.1/distributions3/man/support.GP.Rd |only distributions3-0.2.1/distributions3/man/support.Gamma.Rd | 4 distributions3-0.2.1/distributions3/man/support.Geometric.Rd | 4 distributions3-0.2.1/distributions3/man/support.Gumbel.Rd |only distributions3-0.2.1/distributions3/man/support.HurdleNegativeBinomial.Rd |only distributions3-0.2.1/distributions3/man/support.HurdlePoisson.Rd | 4 distributions3-0.2.1/distributions3/man/support.HyperGeometric.Rd | 4 distributions3-0.2.1/distributions3/man/support.LogNormal.Rd | 4 distributions3-0.2.1/distributions3/man/support.Logistic.Rd | 4 distributions3-0.2.1/distributions3/man/support.NegativeBinomial.Rd | 4 distributions3-0.2.1/distributions3/man/support.Normal.Rd | 4 distributions3-0.2.1/distributions3/man/support.Poisson.Rd | 4 distributions3-0.2.1/distributions3/man/support.Rd | 21 distributions3-0.2.1/distributions3/man/support.RevWeibull.Rd | 4 distributions3-0.2.1/distributions3/man/support.StudentsT.Rd | 4 distributions3-0.2.1/distributions3/man/support.Tukey.Rd | 4 distributions3-0.2.1/distributions3/man/support.Uniform.Rd | 4 distributions3-0.2.1/distributions3/man/support.Weibull.Rd | 4 distributions3-0.2.1/distributions3/man/support.ZINegativeBinomial.Rd |only distributions3-0.2.1/distributions3/man/support.ZIPoisson.Rd | 4 distributions3-0.2.1/distributions3/man/support.ZTNegativeBinomial.Rd |only distributions3-0.2.1/distributions3/man/support.ZTPoisson.Rd |only distributions3-0.2.1/distributions3/man/variance.Rd | 15 distributions3-0.2.1/distributions3/man/zinbinom.Rd |only distributions3-0.2.1/distributions3/man/zipois.Rd | 2 distributions3-0.2.1/distributions3/man/ztnbinom.Rd |only distributions3-0.2.1/distributions3/man/ztpois.Rd |only distributions3-0.2.1/distributions3/tests/testthat/test-Bernoulli.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-Beta.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-Binomial.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-Cauchy.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-ChiSquare.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-Erlang.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-Exponential.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-FisherF.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-Frechet.R | 32 distributions3-0.2.1/distributions3/tests/testthat/test-Gamma.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-GeneralisedExtremeValue.R | 32 distributions3-0.2.1/distributions3/tests/testthat/test-GeneralisedPareto.R | 32 distributions3-0.2.1/distributions3/tests/testthat/test-Geometric.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-Gumbel.R | 32 distributions3-0.2.1/distributions3/tests/testthat/test-HurdleNegativeBinomial.R |only distributions3-0.2.1/distributions3/tests/testthat/test-HurdlePoisson.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-HyperGeometric.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-LogNormal.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-Logistic.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-NegativeBinomial.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-Normal.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-Poisson.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-RevWeibull.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-StudentsT.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-Tukey.R | 27 distributions3-0.2.1/distributions3/tests/testthat/test-Uniform.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-Weibull.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-ZINegativeBinomial.R |only distributions3-0.2.1/distributions3/tests/testthat/test-ZIPoisson.R | 16 distributions3-0.2.1/distributions3/tests/testthat/test-ZTNegativeBinomial.R |only distributions3-0.2.1/distributions3/tests/testthat/test-ZTPoisson.R |only distributions3-0.2.1/distributions3/tests/testthat/test-prodist.R | 98 +- 249 files changed, 3610 insertions(+), 937 deletions(-)
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