Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Complete analytical environment for the construction and analysis
of matrix population models and integral projection models.
Includes the ability to construct historical matrices, which are
2d matrices comprising 3 consecutive times of demographic
information. Estimates both raw and function-based forms of
historical and standard ahistorical matrices. It also estimates
function-based age-by-stage matrices and raw and function-based
Leslie matrices.
Author: Richard P. Shefferson [aut, cre]
,
Johan Ehrlen [aut]
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>
Diff between lefko3 versions 5.4.2 dated 2022-08-09 and 5.5.0 dated 2022-09-13
DESCRIPTION | 8 MD5 | 68 - NAMESPACE | 2 NEWS.md | 159 +- R/RcppExports.R | 210 +++ R/lefko3-package.R | 4 R/matrixcreation.R | 14 R/modelselection.R | 413 +++--- R/popchar.R | 888 -------------- inst/doc/Chapter2.html | 13 inst/doc/Chapter5.Rmd | 10 inst/doc/Chapter5.html | 47 inst/doc/Chapter6.Rmd | 24 inst/doc/Chapter6.html | 244 ++-- inst/doc/Chapter8.Rmd | 13 inst/doc/Chapter8.html | 32 inst/doc/Chapter9.html | 13 man/aflefko2.Rd | 2 man/density_input.Rd | 26 man/flefko2.Rd | 5 man/flefko3.Rd | 5 man/fleslie.Rd | 2 man/modelsearch.Rd | 19 man/summary.lefkoMod.Rd | 2 src/MatsNProj.cpp | 424 +++---- src/PopChar.cpp | 2634 ++++++++++++++++++++++++++++++++++++++++++++ src/RcppExports.cpp | 22 vignettes/Ch6.21-1.png |binary vignettes/Ch6.22-1.png |binary vignettes/Chapter5.Rmd | 10 vignettes/Chapter5.Rmd.orig | 4 vignettes/Chapter6.Rmd | 24 vignettes/Chapter6.Rmd.orig | 2 vignettes/Chapter8.Rmd | 13 vignettes/Chapter8.Rmd.orig | 2 35 files changed, 3746 insertions(+), 1612 deletions(-)
Title: Create and Format Correlation Matrices
Description: Create correlation (or partial correlation) matrices. Correlation matrices are formatted with significance stars based on user preferences. Matrices of coefficients, p-values, and number of pairwise observations are returned. Send resultant formatted matrices to the clipboard to be pasted into excel and other programs. A plot method allows users to visualize correlation matrices created with 'corx'.
Author: James Conigrave [aut, cre]
Maintainer: James Conigrave <james.conigrave@gmail.com>
Diff between corx versions 1.0.7.0 dated 2022-08-25 and 1.0.7.1 dated 2022-09-13
corx-1.0.7.0/corx/man/check_for_vec.Rd |only corx-1.0.7.1/corx/DESCRIPTION | 10 - corx-1.0.7.1/corx/MD5 | 18 - corx-1.0.7.1/corx/NEWS.md | 6 corx-1.0.7.1/corx/R/corx.R | 112 +----------- corx-1.0.7.1/corx/R/to_table.R | 16 - corx-1.0.7.1/corx/README.md | 2 corx-1.0.7.1/corx/man/figures/README-unnamed-chunk-10-1.png |binary corx-1.0.7.1/corx/man/figures/README-unnamed-chunk-11-1.png |binary corx-1.0.7.1/corx/man/rename_if_needed.Rd |only corx-1.0.7.1/corx/tests/testthat/test_matrix.R | 4 11 files changed, 46 insertions(+), 122 deletions(-)
Title: Computation and Visualization of Package Download Counts and
Percentiles
Description: Compute and visualize the cross-sectional and longitudinal number
and rank percentile of package downloads from RStudio's CRAN mirror.
Author: Peter Li [aut, cre]
Maintainer: Peter Li <lindbrook@gmail.com>
Diff between packageRank versions 0.7.0 dated 2022-08-05 and 0.7.1 dated 2022-09-13
DESCRIPTION | 8 MD5 | 10 - NEWS.md | 383 ++++++++++++++++++++--------------------- R/cranDownloadsPlotFunctions.R | 35 +-- R/utc.R | 21 +- README.md | 1 6 files changed, 230 insertions(+), 228 deletions(-)
Title: Tools for Multimodal Network Analysis
Description: A set of tools for analysing multimodal networks.
All functions operate with matrices, edge lists,
and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode, two-mode (bipartite), and sometimes three-mode networks.
It includes functions for measuring
centrality, centralization, cohesion, closure, and constraint,
as well as for network block-modelling and regression.
The package is released as a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book in addition to other network data.
Author: James Hollway [cre, aut, ctb] ,
Jael Tan [ctb] ,
Bernhard Bieri [ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 0.10.6 dated 2022-07-03 and 0.11.3 dated 2022-09-13
migraph-0.10.6/migraph/R/viz_layout.R |only migraph-0.10.6/migraph/man/layouts.Rd |only migraph-0.10.6/migraph/tests/testthat/test-viz_layout.R |only migraph-0.11.3/migraph/DESCRIPTION | 24 migraph-0.11.3/migraph/MD5 | 248 ++-- migraph-0.11.3/migraph/NAMESPACE | 83 + migraph-0.11.3/migraph/NEWS.md | 107 + migraph-0.11.3/migraph/R/class_marks.R | 18 migraph-0.11.3/migraph/R/class_measures.R | 2 migraph-0.11.3/migraph/R/data_ison.R | 57 - migraph-0.11.3/migraph/R/data_mpn.R | 63 - migraph-0.11.3/migraph/R/manip_as.R | 452 ++++++-- migraph-0.11.3/migraph/R/manip_grab.R | 14 migraph-0.11.3/migraph/R/manip_to.R | 414 ++++++- migraph-0.11.3/migraph/R/mark_is.R | 5 migraph-0.11.3/migraph/R/measure_cohesion.R | 10 migraph-0.11.3/migraph/R/measure_diversity.R | 53 migraph-0.11.3/migraph/R/measure_features.R | 3 migraph-0.11.3/migraph/R/measure_holes.R | 1 migraph-0.11.3/migraph/R/member_community.R | 2 migraph-0.11.3/migraph/R/member_components.R | 2 migraph-0.11.3/migraph/R/member_core.R |only migraph-0.11.3/migraph/R/member_equivalence.R | 4 migraph-0.11.3/migraph/R/migraph-defunct.R | 209 --- migraph-0.11.3/migraph/R/model_cluster.R | 22 migraph-0.11.3/migraph/R/model_regression.R | 33 migraph-0.11.3/migraph/R/model_tests.R | 6 migraph-0.11.3/migraph/R/sysdata.rda |binary migraph-0.11.3/migraph/R/viz_autographr.R | 190 ++- migraph-0.11.3/migraph/R/viz_gglineage.R | 16 migraph-0.11.3/migraph/R/viz_layout_grid.R |only migraph-0.11.3/migraph/R/viz_layout_partition.R |only migraph-0.11.3/migraph/README.md | 27 migraph-0.11.3/migraph/build/partial.rdb |binary migraph-0.11.3/migraph/build/vignette.rds |binary migraph-0.11.3/migraph/data/mpn_cow_igo.rda |binary migraph-0.11.3/migraph/inst/doc/p1data.R | 71 - migraph-0.11.3/migraph/inst/doc/p1data.Rmd | 410 +++++++ migraph-0.11.3/migraph/inst/doc/p1data.html | 551 +++++----- migraph-0.11.3/migraph/inst/doc/p3centrality.R | 33 migraph-0.11.3/migraph/inst/doc/p3centrality.Rmd | 114 +- migraph-0.11.3/migraph/inst/doc/p3centrality.html | 216 ++- migraph-0.11.3/migraph/inst/doc/p5equivalence.R |only migraph-0.11.3/migraph/inst/doc/p5equivalence.Rmd |only migraph-0.11.3/migraph/inst/doc/p5equivalence.html |only migraph-0.11.3/migraph/inst/doc/p7linearmodel.R |only migraph-0.11.3/migraph/inst/doc/p7linearmodel.Rmd |only migraph-0.11.3/migraph/inst/doc/p7linearmodel.html |only migraph-0.11.3/migraph/man/add.Rd | 10 migraph-0.11.3/migraph/man/as.Rd | 25 migraph-0.11.3/migraph/man/autographr.Rd | 4 migraph-0.11.3/migraph/man/centralisation.Rd | 10 migraph-0.11.3/migraph/man/centrality.Rd | 20 migraph-0.11.3/migraph/man/closure.Rd | 10 migraph-0.11.3/migraph/man/cluster.Rd | 29 migraph-0.11.3/migraph/man/cohesion.Rd | 24 migraph-0.11.3/migraph/man/community.Rd | 9 migraph-0.11.3/migraph/man/components.Rd | 15 migraph-0.11.3/migraph/man/core-periphery.Rd |only migraph-0.11.3/migraph/man/create.Rd | 18 migraph-0.11.3/migraph/man/defunct.Rd | 109 - migraph-0.11.3/migraph/man/diversity.Rd | 66 - migraph-0.11.3/migraph/man/equivalence.Rd | 17 migraph-0.11.3/migraph/man/features.Rd | 14 migraph-0.11.3/migraph/man/figures/README-coercion-graph-1.png |only migraph-0.11.3/migraph/man/figures/isonadolescents.pdf |only migraph-0.11.3/migraph/man/figures/isonadolescents.png |only migraph-0.11.3/migraph/man/figures/isonalgebra.pdf |only migraph-0.11.3/migraph/man/figures/isonalgebra.png |only migraph-0.11.3/migraph/man/figures/isonbrandes.pdf |only migraph-0.11.3/migraph/man/figures/isonbrandes.png |only migraph-0.11.3/migraph/man/figures/isonkarateka.pdf |only migraph-0.11.3/migraph/man/figures/isonkarateka.png |only migraph-0.11.3/migraph/man/figures/isonnetworkers.pdf |only migraph-0.11.3/migraph/man/figures/isonnetworkers.png |only migraph-0.11.3/migraph/man/figures/isonproj.pdf |only migraph-0.11.3/migraph/man/figures/isonproj.png |only migraph-0.11.3/migraph/man/figures/isonsouthernwomen.pdf |only migraph-0.11.3/migraph/man/figures/isonsouthernwomen.png |only migraph-0.11.3/migraph/man/figures/mpnelitemex.pdf |only migraph-0.11.3/migraph/man/figures/mpnelitemex.png |only migraph-0.11.3/migraph/man/figures/mpneliteusa.pdf |only migraph-0.11.3/migraph/man/figures/mpneliteusa.png |only migraph-0.11.3/migraph/man/generate.Rd | 10 migraph-0.11.3/migraph/man/grab.Rd | 24 migraph-0.11.3/migraph/man/graph_census.Rd | 8 migraph-0.11.3/migraph/man/grid_layouts.Rd |only migraph-0.11.3/migraph/man/holes.Rd | 15 migraph-0.11.3/migraph/man/is.Rd | 28 migraph-0.11.3/migraph/man/ison_adolescents.Rd | 49 migraph-0.11.3/migraph/man/ison_algebra.Rd | 49 migraph-0.11.3/migraph/man/ison_brandes.Rd | 76 - migraph-0.11.3/migraph/man/ison_karateka.Rd | 21 migraph-0.11.3/migraph/man/ison_networkers.Rd | 46 migraph-0.11.3/migraph/man/ison_projection.Rd | 3 migraph-0.11.3/migraph/man/ison_southern_women.Rd | 28 migraph-0.11.3/migraph/man/mark_nodes.Rd | 10 migraph-0.11.3/migraph/man/mark_ties.Rd | 14 migraph-0.11.3/migraph/man/mpn_bristol.Rd | 47 migraph-0.11.3/migraph/man/mpn_cow.Rd | 114 +- migraph-0.11.3/migraph/man/mpn_elite_mex.Rd | 48 migraph-0.11.3/migraph/man/mpn_elite_usa.Rd | 92 - migraph-0.11.3/migraph/man/mpn_ryanair.Rd | 44 migraph-0.11.3/migraph/man/mpn_senate112.Rd | 132 +- migraph-0.11.3/migraph/man/node_census.Rd | 10 migraph-0.11.3/migraph/man/partition_layouts.Rd |only migraph-0.11.3/migraph/man/read.Rd | 18 migraph-0.11.3/migraph/man/reexports.Rd | 2 migraph-0.11.3/migraph/man/reformat.Rd | 32 migraph-0.11.3/migraph/man/regression.Rd | 7 migraph-0.11.3/migraph/man/tests.Rd | 12 migraph-0.11.3/migraph/man/transform.Rd | 89 + migraph-0.11.3/migraph/tests/testthat/test-manip_as.R | 12 migraph-0.11.3/migraph/tests/testthat/test-manip_grab.R | 5 migraph-0.11.3/migraph/tests/testthat/test-manip_to.R | 27 migraph-0.11.3/migraph/tests/testthat/test-mark_nodes.R | 17 migraph-0.11.3/migraph/tests/testthat/test-mark_ties.R | 16 migraph-0.11.3/migraph/tests/testthat/test-measure_diversity.R | 6 migraph-0.11.3/migraph/tests/testthat/test-measure_features.R | 12 migraph-0.11.3/migraph/tests/testthat/test-model_tests.R | 8 migraph-0.11.3/migraph/tests/testthat/test-viz_autographr.R | 170 +-- migraph-0.11.3/migraph/tests/testthat/test-viz_layout_grid.R |only migraph-0.11.3/migraph/tests/testthat/test-viz_layout_partition.R |only migraph-0.11.3/migraph/vignettes/p1data.Rmd | 410 +++++++ migraph-0.11.3/migraph/vignettes/p1data.Rmd.orig |only migraph-0.11.3/migraph/vignettes/p3centrality.Rmd | 114 +- migraph-0.11.3/migraph/vignettes/p3centrality.Rmd.orig |only migraph-0.11.3/migraph/vignettes/p5equivalence.Rmd |only migraph-0.11.3/migraph/vignettes/p5equivalence.Rmd.orig |only migraph-0.11.3/migraph/vignettes/p7linearmodel.Rmd |only migraph-0.11.3/migraph/vignettes/p7linearmodel.Rmd.orig |only migraph-0.11.3/migraph/vignettes/teaching |only 132 files changed, 3893 insertions(+), 1772 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-03 0.8.0
2022-07-15 0.6.5
2022-05-10 0.6.3
2022-02-22 0.6.1
Title: Pacote Para Analise De Experimentos Com Testemunhas Adicionais
Description: Pacote para a analise de experimentos com um ou dois fatores com
testemunhas adicionais conduzidos no delineamento inteiramente
casualizado ou em blocos casualizados.
"Package for the analysis of one or two-way experiments with
additional controls conducted in a completely randomized design
or in a randomized block design".
Author: Alcinei Mistico Azevedo [aut, cre]
Maintainer: Alcinei Mistico Azevedo <alcineimistico@hotmail.com>
Diff between Tratamentos.ad versions 0.2.3 dated 2022-05-10 and 0.2.4 dated 2022-09-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ R/DunnetCritic.R | 2 +- 4 files changed, 12 insertions(+), 8 deletions(-)
More information about Tratamentos.ad at CRAN
Permanent link
Title: Analyzing Data Through of Percentage of Importance Indice and
Its Derivations
Description: The Percentage of Importance Indice (Percentage_I.I.) bases in magnitudes, frequencies, and distributions of occurrence of an event (DEMOLIN-LEITE, 2021) <http://cjascience.com/index.php/CJAS/article/view/1009/1350>. This index can detect the key loss sources (L.S) and solution sources (S.S.), classifying them according to their importance in terms of loss or income gain, on the productive system. The Percentage_I.I. = [(ks1 x c1 x ds1)/SUM (ks1 x c1 x ds1) + (ks2 x c2 x ds2) + (ksn x cn x dsn)] x 100. key source (ks) is obtained using simple regression analysis and magnitude (abundance). Constancy (c) is SUM of occurrence of L.S. or S.S. on the samples (absence = 0 or presence = 1), and distribution source (ds) is obtained using chi-square test. This index has derivations: i.e., i) Loss estimates and solutions effectiveness and ii) Attention and non-attention levels (DEMOLIN-LEITE,2024) <DOI: 10.1590/1519-6984.253215>.
Author: Germano Leao Demolin Leite [aut]
,
Alcinei Mistico Azevedo [aut, cre]
Maintainer: Alcinei Mistico Azevedo <alcineimistico@hotmail.com>
Diff between ImportanceIndice versions 0.0.1 dated 2022-04-08 and 0.0.2 dated 2022-09-13
DESCRIPTION | 10 ++--- MD5 | 36 +++++++++---------- NEWS.md | 3 + R/EffectivenessOfSolution.R | 11 +++-- R/LossProduction.R | 29 +++++++++------ R/LossSource.R | 21 +++++------ R/NonAttentionLevel.R | 16 ++++---- R/SelectEffectivenessOfSolution.R | 16 ++++---- R/SolutionSource.R | 66 +++++++++++++++++------------------ R/zzz.R | 5 ++ data/DataLossSource.txt | 2 - data/DataNumberSamples.txt | 2 - data/DataSolutionSource.txt | 2 - man/EffectivenessOfSolution.Rd | 6 +-- man/LossProduction.Rd | 10 ++--- man/LossSource.Rd | 6 +-- man/NonAttentionLevel.Rd | 14 +++---- man/SelectEffectivenessOfSolution.Rd | 14 +++---- man/SolutionSource.Rd | 14 +++---- 19 files changed, 147 insertions(+), 136 deletions(-)
More information about ImportanceIndice at CRAN
Permanent link
Title: Tools for Graph Matching
Description: Versatile tools and data for graph matching analysis with various forms of prior information
that supports working with 'igraph' objects, matrix objects, or lists of either.
Author: Daniel Sussman [aut, cre],
Zihuan Qiao [aut],
Joshua Agterberg [ctb],
Lujia Wang [ctb],
Vince Lyzinski [ctb]
Maintainer: Daniel Sussman <sussman@bu.edu>
Diff between iGraphMatch versions 2.0.0 dated 2021-11-10 and 2.0.1 dated 2022-09-13
DESCRIPTION | 8 - MD5 | 20 +- NEWS.md | 3 R/check_graphs.R | 15 - R/init_start.R | 2 R/lap.R | 2 build/vignette.rds |binary inst/WORDLIST | 4 inst/doc/iGraphMatch.html | 353 +++++++++++++++++++++++++++++++++++----------- man/init_start.Rd | 2 tests/testthat/Rplots.pdf |binary 11 files changed, 297 insertions(+), 112 deletions(-)
Title: Optimum Sample Allocation in Stratified Sampling Schemes
Description: Functions in this package provide solution to classical problem in
survey methodology - an optimum sample allocation in stratified sampling
schemes. In this context, the optimal allocation is in the classical
Tschuprov-Neyman's sense and it satisfies additional lower or upper bounds
restrictions imposed on sample sizes in strata. There are few different
algorithms available to use, and one them is based on popular sample
allocation method that applies Neyman allocation to recursively reduced set of
strata.
This package also provides the function that computes a solution to the minimum
sample size allocation problem, which is a minor modification of the classical
optimium sample allocation. This problem lies in the determination of a vector
of strata sample sizes that minimizes total sample size, under assumed fixed
level of the pi-estimator's variance. As in the case of the classical optimal
allocation, the problem of minimum sample size allocation can be complemented
by imposing upper [...truncated...]
Author: Wojciech Wojciak [aut, cre],
Jacek Wesolowski [sad],
Robert Wieczorkowski [ctb]
Maintainer: Wojciech Wojciak <wojciech.wojciak@gmail.com>
Diff between stratallo versions 2.0.1 dated 2022-04-13 and 2.1.0 dated 2022-09-13
stratallo-2.0.1/stratallo/R/algorithms_rna.R |only stratallo-2.0.1/stratallo/R/algorithms_upper.R |only stratallo-2.0.1/stratallo/man/h_get_which_violated.Rd |only stratallo-2.0.1/stratallo/man/rna_one_sided.Rd |only stratallo-2.0.1/stratallo/tests/testthat/_snaps/algorithms_rna_one_sided.md |only stratallo-2.0.1/stratallo/tests/testthat/test-algorithms_rna_one_sided.R |only stratallo-2.1.0/stratallo/DESCRIPTION | 27 stratallo-2.1.0/stratallo/MD5 | 66 stratallo-2.1.0/stratallo/NAMESPACE | 4 stratallo-2.1.0/stratallo/NEWS.md | 9 stratallo-2.1.0/stratallo/R/algorithms_onesided.R |only stratallo-2.1.0/stratallo/R/algorithms_twosided.R |only stratallo-2.1.0/stratallo/R/helpers.R | 102 stratallo-2.1.0/stratallo/R/opt.R | 210 stratallo-2.1.0/stratallo/R/variance.R | 14 stratallo-2.1.0/stratallo/README.md | 56 stratallo-2.1.0/stratallo/build/partial.rdb |binary stratallo-2.1.0/stratallo/inst/WORDLIST | 6 stratallo-2.1.0/stratallo/inst/doc/stratallo.R | 30 stratallo-2.1.0/stratallo/inst/doc/stratallo.Rmd | 87 stratallo-2.1.0/stratallo/inst/doc/stratallo.html | 197 stratallo-2.1.0/stratallo/man/allocation_summary.Rd |only stratallo-2.1.0/stratallo/man/dopt.Rd | 129 stratallo-2.1.0/stratallo/man/dopt_upper.Rd | 16 stratallo-2.1.0/stratallo/man/h_get_which_violates.Rd |only stratallo-2.1.0/stratallo/man/nopt.Rd | 22 stratallo-2.1.0/stratallo/man/rna_onesided.Rd |only stratallo-2.1.0/stratallo/man/rnabox.Rd |only stratallo-2.1.0/stratallo/man/var_tst.Rd | 6 stratallo-2.1.0/stratallo/tests/testthat/_snaps/algorithms_coma.md | 8181 +++++----- stratallo-2.1.0/stratallo/tests/testthat/_snaps/algorithms_rnabox.md |only stratallo-2.1.0/stratallo/tests/testthat/_snaps/algorithms_rnaonesided.md |only stratallo-2.1.0/stratallo/tests/testthat/_snaps/algorithms_sga.md | 8181 +++++----- stratallo-2.1.0/stratallo/tests/testthat/_snaps/algorithms_sgaplus.md | 8181 +++++----- stratallo-2.1.0/stratallo/tests/testthat/test-algorithms_coma.R | 28 stratallo-2.1.0/stratallo/tests/testthat/test-algorithms_rnabox.R |only stratallo-2.1.0/stratallo/tests/testthat/test-algorithms_rnaonesided.R |only stratallo-2.1.0/stratallo/tests/testthat/test-algorithms_sga.R | 28 stratallo-2.1.0/stratallo/tests/testthat/test-algorithms_sgaplus.R | 28 stratallo-2.1.0/stratallo/tests/testthat/test-dopt.R | 324 stratallo-2.1.0/stratallo/tests/testthat/test-helpers.R | 88 stratallo-2.1.0/stratallo/vignettes/stratallo.Rmd | 87 42 files changed, 13351 insertions(+), 12756 deletions(-)
Title: Data Cleaner for Anthropometric Measurements
Description: Identifies implausible anthropometric (e.g., height,
weight) measurements in irregularly spaced longitudinal datasets, such as those from electronic health records.
Author: Daymont Carrie [aut],
Grundmeier Robert [aut],
Miller Jeffrey [aut],
Campos Diego [aut],
Chudnov Dan [ctb],
De los Santos Hannah [ctb, cre],
Cao Lusha [ctb],
Silva Steffani [ctb],
Zhang Hanzhe [ctb],
Boyas Matt [ctb],
Freedman David [ctb],
Achilleos [...truncated...]
Maintainer: De los Santos Hannah <hdelossantos@mitre.org>
Diff between growthcleanr versions 2.0.1 dated 2022-09-01 and 2.0.2 dated 2022-09-13
DESCRIPTION | 6 LICENSE | 4 MD5 | 100 NAMESPACE | 68 NEWS.md | 372 +-- R/adjustcarryforward.R | 3610 +++++++++++++++---------------- R/adult_clean.R | 3356 ++++++++++++++-------------- R/adult_support.R | 1896 ++++++++-------- R/cdc.R | 712 +++--- R/data.R | 26 R/extdata.R | 414 +-- R/growth.R | 2010 ++++++++--------- R/pediatric_clean.R | 2942 ++++++++++++------------- R/pediatric_support.R | 322 +- R/testacf_func.R | 750 +++--- R/utils.R | 660 ++--- README.md | 217 - exec/gcdriver.R | 348 +- exec/testadjustcf.R | 782 +++--- inst/CITATION | 48 man/CDCref_d.Rd | 28 man/acf_answers.Rd | 126 - man/adjustcarryforward.Rd | 248 +- man/bmianthro.Rd | 34 man/cleangrowth.Rd | 366 +-- man/ewma.Rd | 96 man/ext_bmiz.Rd | 222 - man/growth_cdc_ext.Rd | 34 man/lenanthro.Rd | 34 man/longwide.Rd | 130 - man/nhanes-reference-medians.Rd | 30 man/read_anthro.Rd | 54 man/recode_sex.Rd | 102 man/sd_median.Rd | 84 man/simple_bmi.Rd | 86 man/splitinput.Rd | 102 man/syngrowth.Rd | 44 man/tanner_ht_vel.Rd | 34 man/tanner_ht_vel_with_2sd.Rd | 36 man/test_syngrowth_sas_output_compare.Rd | 28 man/test_syngrowth_wide.Rd | 28 man/testacf.Rd | 120 - man/weianthro.Rd | 34 man/who_ht_maxvel.Rd | 36 man/who_ht_maxvel_2sd.Rd | 36 man/who_ht_vel_2sd.Rd | 36 man/who_ht_vel_3sd.Rd | 36 tests/testthat.R | 8 tests/testthat/test-cdc.R | 118 - tests/testthat/test-cleangrowth.R | 444 +-- tests/testthat/test-utils.R | 840 +++---- 51 files changed, 11160 insertions(+), 11137 deletions(-)
Title: Species Distribution Modelling Predictor Datasets
Description: Terrestrial and marine predictors for species distribution modelling
from multiple sources, including WorldClim <https://www.worldclim.org/>,,
ENVIREM <https://envirem.github.io/>, Bio-ORACLE <https://bio-oracle.org/>
and MARSPEC <http://www.marspec.org/>.
Author: Samuel Bosch [aut],
Lennert Tyberghein [ctb],
Olivier De Clerck [ctb],
Salvador Fernandez [aut, cre],
Lennert Schepers [ctb],
LifeWatch Belgium [fnd]
Maintainer: Salvador Fernandez <salvador.fernandez@vliz.be>
Diff between sdmpredictors versions 0.2.12 dated 2022-02-24 and 0.2.13 dated 2022-09-13
DESCRIPTION | 17 LICENSE | 2 MD5 | 107 ++-- NAMESPACE | 52 +- NEWS.md | 117 ++-- R/citations.R | 202 +++---- R/compression.R | 156 +++--- R/get_sysdata.R | 6 R/list.R | 804 +++++++++++++++---------------- R/load.R | 364 +++++++------- R/sdmpredictors.R | 72 +- R/stats.R | 822 +++++++++++++++---------------- R/sysdata.rda |binary R/translator.R | 262 +++++----- README.md | 262 +++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/quickstart.R | 186 +++---- inst/doc/quickstart.Rmd | 324 ++++++------ inst/doc/quickstart.html | 981 ++++++++++++++++++++++---------------- man/calculate_statistics.Rd | 72 +- man/compress_file.Rd | 68 +- man/correlation_groups.Rd | 98 +-- man/dataset_citations.Rd | 78 +-- man/decompress_file.Rd | 60 +- man/equalarea_project.Rd | 42 - man/equalareaproj.Rd | 36 - man/get_datadir.Rd | 52 +- man/get_future_layers.Rd | 82 +-- man/get_layers_info.Rd | 70 +- man/get_paleo_layers.Rd | 90 +-- man/layer_citations.Rd | 82 +-- man/layer_stats.Rd | 62 +- man/layers_correlation.Rd | 70 +- man/list_datasets.Rd | 78 +-- man/list_layers.Rd | 126 ++-- man/list_layers_future.Rd | 114 ++-- man/list_layers_paleo.Rd | 120 ++-- man/load_layers.Rd | 88 +-- man/lonlatproj.Rd | 36 - man/pearson_correlation.Rd | 30 - man/pearson_correlation_matrix.Rd | 86 +-- man/plot_correlation.Rd | 86 +-- man/sdm_to_bo.Rd | 42 - man/sdmpredictors.Rd | 74 +- tests/testthat.R | 10 tests/testthat/test-http_status.R |only tests/testthat/test_citations.R | 124 ++-- tests/testthat/test_compression.R | 158 +++--- tests/testthat/test_get_sysdata.R | 184 +++---- tests/testthat/test_list.R | 62 +- tests/testthat/test_load.R | 360 ++++++------- tests/testthat/test_stats.R | 240 ++++----- tests/testthat/test_zzzfinal.R | 36 - vignettes/quickstart.Rmd | 324 ++++++------ 55 files changed, 4131 insertions(+), 3945 deletions(-)
Title: Easy Linear, Quadratic and Cubic Regression Models
Description: Focused on linear, quadratic and cubic regression models, it has a function for calculating the models, obtaining a list with their parameters, and a function for making the graphs for the respective models.
Author: Wagner Martins dos Santos [aut, cre]
Maintainer: Wagner Martins dos Santos <wagnnerms97@gmail.com>
Diff between regr.easy versions 1.0.0 dated 2022-06-17 and 1.0.1 dated 2022-09-13
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/regr_easy_calc.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Generate Customized Correlation Matrices
Description: Provides a function that generates a customized correlation matrix based on limit values and proportions for intervals composed by its limits. It can also generate random matrices with low, medium, and high correlations, in which low, medium, and high thresholds are user-defined.
Author: Helgem de Souza Ribeiro Martins[aut, cre], Anderson Ribeiro Duarte[aut]
Maintainer: Helgem de Souza Ribeiro Martins <helgem.souza@gmail.com>
Diff between gencor versions 1.0.1 dated 2022-08-19 and 1.0.2 dated 2022-09-13
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/gencor.R | 46 ++++++++++++++++++++++++++++++++++++---------- man/gencor.Rd | 29 +++++++++++++++++++++++++++++ 4 files changed, 71 insertions(+), 16 deletions(-)
Title: Flexible and Robust GARCH-X Modelling
Description: Flexible and robust estimation and inference of generalised autoregressive conditional heteroscedasticity (GARCH) models with covariates ('X') based on the results by Francq and Thieu (2018) <doi:10.1017/S0266466617000512>. Coefficients can straightforwardly be set to zero by omission, and quasi maximum likelihood methods ensure estimates are generally consistent and inference valid, even when the standardised innovations are non-normal and/or dependent over time, see <https://journal.r-project.org/archive/2021/RJ-2021-057/RJ-2021-057.pdf> for an overview of the package.
Author: Genaro Sucarrat [aut, cre]
Maintainer: Genaro Sucarrat <gsucarrat@gmail.com>
Diff between garchx versions 1.3 dated 2021-07-15 and 1.5 dated 2022-09-13
garchx-1.3/garchx/man/ttest.Rd |only garchx-1.5/garchx/DESCRIPTION | 15 + garchx-1.5/garchx/MD5 | 27 +-- garchx-1.5/garchx/NAMESPACE | 8 - garchx-1.5/garchx/NEWS | 18 ++ garchx-1.5/garchx/R/garchx-internal.R | 2 garchx-1.5/garchx/R/garchx-source-code.R | 243 ++++++++++++++++++++++--------- garchx-1.5/garchx/man/garchx-package.Rd | 6 garchx-1.5/garchx/man/garchx.Rd | 2 garchx-1.5/garchx/man/garchxAvar.Rd | 2 garchx-1.5/garchx/man/garchxSim.Rd | 6 garchx-1.5/garchx/man/refit.Rd |only garchx-1.5/garchx/man/ttest0.Rd |only garchx-1.5/garchx/src/garchx.c | 4 garchx-1.5/garchx/src/recursions.c | 47 +++++ garchx-1.5/garchx/src/recursions.h | 4 16 files changed, 282 insertions(+), 102 deletions(-)
More information about SpectralClMixed at CRAN
Permanent link
Title: Creates Statistical Reports
Description: Contains functions to create regulatory-style statistical reports.
Originally designed to create tables, listings, and figures for the
pharmaceutical, biotechnology, and medical device industries, these
reports are generalized enough that they could be used in any industry.
Generates text, rich-text, PDF, HTML, and Microsoft Word file formats.
The package specializes
in printing wide and long tables with automatic page wrapping and splitting.
Reports can be produced with a minimum of function calls, and without
relying on other table packages. The package supports titles, footnotes,
page header, page footers, spanning headers, page by variables,
and automatic page numbering.
Author: David Bosak [aut, cre],
Kevin Kramer [ctb],
Duong Tran [ctb],
Archytas Clinical Solutions [cph]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between reporter versions 1.3.5 dated 2022-08-08 and 1.3.6 dated 2022-09-13
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reporter-1.3.6/reporter/R/create_table_rtf.R | 122 ++ reporter-1.3.6/reporter/R/create_table_text.R | 97 +- reporter-1.3.6/reporter/R/page_template.R | 149 +++ reporter-1.3.6/reporter/R/page_template_docx.R | 312 ++++++ reporter-1.3.6/reporter/R/page_template_html.R | 262 +++++ reporter-1.3.6/reporter/R/page_template_pdf.R | 462 +++++++++- reporter-1.3.6/reporter/R/page_template_rtf.R | 419 +++++++-- reporter-1.3.6/reporter/R/report_spec.r | 141 ++- reporter-1.3.6/reporter/R/reporter.R | 4 reporter-1.3.6/reporter/R/sizing_functions.R | 66 + reporter-1.3.6/reporter/R/table_spec.r | 28 reporter-1.3.6/reporter/R/utilities.R | 154 +++ reporter-1.3.6/reporter/R/write_docx.R | 15 reporter-1.3.6/reporter/R/write_pdf.R | 6 reporter-1.3.6/reporter/R/write_report_pdf.R | 1 reporter-1.3.6/reporter/README.md | 10 reporter-1.3.6/reporter/build/vignette.rds |binary reporter-1.3.6/reporter/inst/doc/reporter-faq.Rmd | 19 reporter-1.3.6/reporter/inst/doc/reporter-faq.html | 18 reporter-1.3.6/reporter/inst/doc/reporter-super.R | 29 reporter-1.3.6/reporter/inst/doc/reporter-super.Rmd | 127 +- reporter-1.3.6/reporter/inst/doc/reporter-super.html | 193 ++-- reporter-1.3.6/reporter/inst/extdata/EX.csv | 168 +-- reporter-1.3.6/reporter/man/create_table.Rd | 6 reporter-1.3.6/reporter/man/footnotes.Rd | 9 reporter-1.3.6/reporter/man/images/reporter_new.png |only reporter-1.3.6/reporter/man/images/symbols.png |only reporter-1.3.6/reporter/man/page_header.Rd | 6 reporter-1.3.6/reporter/man/reporter.Rd | 3 reporter-1.3.6/reporter/man/titles.Rd | 17 reporter-1.3.6/reporter/man/write_report.Rd | 12 reporter-1.3.6/reporter/tests/testthat/html/images/test11-VKBB.jpg |only reporter-1.3.6/reporter/tests/testthat/html/images/test14-G473.jpg |only reporter-1.3.6/reporter/tests/testthat/html/images/test14-K6HX.jpg |only reporter-1.3.6/reporter/tests/testthat/html/images/test14-LFV2.jpg |only reporter-1.3.6/reporter/tests/testthat/html/images/test20-SMIP.jpg |only 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reporter-1.3.6/reporter/tests/testthat/test-rtf2.R | 461 +++++++++ reporter-1.3.6/reporter/tests/testthat/test-sizing_functions.R | 38 reporter-1.3.6/reporter/tests/testthat/test-styles.R | 55 + reporter-1.3.6/reporter/tests/testthat/test-system.R | 389 ++++++++ reporter-1.3.6/reporter/tests/testthat/test-user.R | 168 +++ reporter-1.3.6/reporter/tests/testthat/test-utilities.R | 135 ++ reporter-1.3.6/reporter/tests/testthat/user/user1.out |only reporter-1.3.6/reporter/tests/testthat/user/user1.pdf |only reporter-1.3.6/reporter/tests/testthat/user/user1.rtf |only reporter-1.3.6/reporter/tests/testthat/user/user12.rtf |only reporter-1.3.6/reporter/tests/testthat/user/user13.pdf |only reporter-1.3.6/reporter/tests/testthat/user/user13.rtf |only reporter-1.3.6/reporter/tests/testthat/user/user14.rtf |only reporter-1.3.6/reporter/tests/testthat/user/user16.pdf |only reporter-1.3.6/reporter/tests/testthat/user/user16.rtf |only reporter-1.3.6/reporter/tests/testthat/user/user2.out |only 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Title: A 'Linter' for R Code
Description: Checks adherence to a given style, syntax errors and possible
semantic issues. Supports on the fly checking of R code edited with
'RStudio IDE', 'Emacs', 'Vim', 'Sublime Text', 'Atom' and 'Visual
Studio Code'.
Author: Jim Hester [aut, cre],
Florent Angly [aut] ,
Russ Hyde [aut],
Michael Chirico [aut],
Kun Ren [aut],
Alexander Rosenstock [aut] ,
Indrajeet Patil [aut]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between lintr versions 3.0.0 dated 2022-06-13 and 3.0.1 dated 2022-09-13
DESCRIPTION | 47 +++-- MD5 | 151 +++++++++-------- NAMESPACE | 2 NEWS.md | 70 ++++++++ R/assignment_linter.R | 24 ++ R/brace_linter.R | 24 +- R/comment_linters.R | 9 - R/exclude.R | 9 - R/extract.R | 13 + R/function_argument_linter.R |only R/get_source_expressions.R | 4 R/lint.R | 187 ++++++++++++++++++++-- R/linter_tag_docs.R | 2 R/literal_coercion_linter.R | 36 ++-- R/namespace.R | 26 +-- R/redundant_ifelse_linter.R | 16 - R/seq_linter.R | 61 +++++-- R/trailing_blank_lines_linter.R | 2 R/tree-utils.R | 5 R/unreachable_code_linter.R | 5 R/utils.R | 10 - R/vector_logic_linter.R | 13 + R/with.R | 6 R/zzz.R | 116 ++++++++----- build/lintr.pdf |binary inst/doc/continuous-integration.Rmd | 8 inst/doc/continuous-integration.html | 21 +- inst/doc/creating_linters.html | 17 +- inst/doc/editors.Rmd | 10 + inst/doc/editors.html | 37 ++-- inst/doc/lintr.Rmd | 12 - inst/doc/lintr.html | 31 ++- inst/lintr/linters.csv | 1 man/assignment_linter.Rd | 8 man/best_practices_linters.Rd | 1 man/consistency_linters.Rd | 1 man/default_undesirable_functions.Rd | 6 man/efficiency_linters.Rd | 2 man/function_argument_linter.Rd |only man/ids_with_token.Rd | 4 man/lint.Rd | 18 +- man/linters.Rd | 7 man/lintr-package.Rd | 1 man/literal_coercion_linter.Rd | 4 man/sarif_output.Rd |only man/seq_linter.Rd | 8 man/style_linters.Rd | 1 man/vector_logic_linter.Rd | 12 + tests/testthat/checkstyle.xml | 2 tests/testthat/dummy_packages/no_export_dep |only tests/testthat/helper.R | 4 tests/testthat/test-assignment_linter.R | 64 +++++++ tests/testthat/test-brace_linter.R | 46 +++++ tests/testthat/test-ci.R | 22 +- tests/testthat/test-class_equals_linter.R | 49 ++--- tests/testthat/test-commented_code_linter.R | 32 +++ tests/testthat/test-exclusions.R | 79 +++++++++ tests/testthat/test-expect_identical_linter.R | 54 ++---- tests/testthat/test-expect_s3_class_linter.R | 10 - tests/testthat/test-function_argument_linter.R |only tests/testthat/test-get_source_expressions.R | 67 ++++++- tests/testthat/test-knitr_formats.R | 2 tests/testthat/test-linter_tags.R | 4 tests/testthat/test-literal_coercion_linter.R | 64 ++++++- tests/testthat/test-namespace_linter.R | 28 +-- tests/testthat/test-object_length_linter.R | 17 +- tests/testthat/test-object_usage_linter.R | 13 - tests/testthat/test-parse_exclusions.R | 6 tests/testthat/test-redundant_ifelse_linter.R | 30 +++ tests/testthat/test-rstudio_markers.R | 8 tests/testthat/test-seq_linter.R | 86 +++++++++- tests/testthat/test-trailing_blank_lines_linter.R | 58 +++++- tests/testthat/test-unreachable_code_linter.R | 16 + tests/testthat/test-with.R | 10 - tests/testthat/test-xml_nodes_to_lints.R | 6 vignettes/continuous-integration.Rmd | 8 vignettes/editors.Rmd | 10 + vignettes/lintr.Rmd | 12 - 78 files changed, 1401 insertions(+), 454 deletions(-)
Title: Interface for the 'Finnish Biodiversity Information Facility'
API
Description: A programmatic interface to the 'Finnish Biodiversity Information
Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates
Finnish biodiversity data from multiple sources in a single open access
portal for researchers, citizen scientists, industry and government.
'FinBIF' allows users of biodiversity information to find, access, combine
and visualise data on Finnish plants, animals and microorganisms. The
'finbif' package makes the publicly available data in 'FinBIF' easily
accessible to programmers. Biodiversity information is available on taxonomy
and taxon occurrence. Occurrence data can be filtered by taxon, time,
location and other variables. The data accessed are conveniently
preformatted for subsequent analyses.
Author: Finnish Museum of Natural History - Luomus [cph],
William K. Morris [aut, cre]
Maintainer: William K. Morris <willi@mmorris.email>
Diff between finbif versions 0.6.6 dated 2022-08-08 and 0.7.0 dated 2022-09-13
finbif-0.6.6/finbif/tests/testthat/_snaps/zzz-finbif |only finbif-0.6.6/finbif/tests/testthat/test-zzz-finbif.R |only finbif-0.6.6/finbif/tests/write-files/finbif_cache_file_4c64a068da60f708c4e928701ec538ef |only finbif-0.7.0/finbif/DESCRIPTION | 11 finbif-0.7.0/finbif/MD5 | 88 ++-- finbif-0.7.0/finbif/NAMESPACE | 1 finbif-0.7.0/finbif/NEWS.md | 33 + finbif-0.7.0/finbif/R/filters.R | 19 finbif-0.7.0/finbif/R/finbif-package.R | 3 finbif-0.7.0/finbif/R/finbif_informal_groups.R | 34 + finbif-0.7.0/finbif/R/finbif_metadata.R | 62 ++- finbif-0.7.0/finbif/R/finbif_occurrence.R | 176 +++++++- finbif-0.7.0/finbif/R/finbif_occurrence_load.R | 5 finbif-0.7.0/finbif/R/finbif_records.R | 197 +++++----- finbif-0.7.0/finbif/R/finbif_taxa.R | 9 finbif-0.7.0/finbif/R/sysdata.rda |binary finbif-0.7.0/finbif/R/utils.R | 34 + finbif-0.7.0/finbif/R/zzz.R | 1 finbif-0.7.0/finbif/README.md | 2 finbif-0.7.0/finbif/inst/NEWS.Rd | 30 + finbif-0.7.0/finbif/inst/doc/finbif.Rmd | 30 - finbif-0.7.0/finbif/inst/doc/finbif.html | 45 +- finbif-0.7.0/finbif/inst/doc/v02_occurrence_data.html | 13 finbif-0.7.0/finbif/inst/doc/v03_selecting_variables.html | 13 finbif-0.7.0/finbif/inst/doc/v04_metadata.Rmd | 2 finbif-0.7.0/finbif/inst/doc/v04_metadata.html | 15 finbif-0.7.0/finbif/inst/doc/v05_filtering.Rmd | 130 +++--- finbif-0.7.0/finbif/inst/doc/v05_filtering.html | 149 +++---- finbif-0.7.0/finbif/inst/doc/v06_plotting.html | 13 finbif-0.7.0/finbif/man/figures/plot-occurrences-eval-1.png |binary finbif-0.7.0/finbif/man/filters.Rd | 19 finbif-0.7.0/finbif/man/finbif-package.Rd | 3 finbif-0.7.0/finbif/man/finbif_informal_groups.Rd | 13 finbif-0.7.0/finbif/man/finbif_occurrence.Rd | 14 finbif-0.7.0/finbif/man/finbif_occurrence_load.Rd | 4 finbif-0.7.0/finbif/man/finbif_records.Rd | 16 finbif-0.7.0/finbif/man/finbif_taxa.Rd | 6 finbif-0.7.0/finbif/tests/testthat/_snaps/local-finbif_occurrence_load.md | 12 finbif-0.7.0/finbif/tests/testthat/helper-finbif.R | 141 +++++-- finbif-0.7.0/finbif/tests/testthat/test-finbif_occurrence.R | 108 +++++ finbif-0.7.0/finbif/tests/testthat/test-finbif_taxa.R | 15 finbif-0.7.0/finbif/tests/testthat/test-local-finbif_occurrence_load.R | 53 ++ finbif-0.7.0/finbif/tests/testthat/test-metadata.R | 14 finbif-0.7.0/finbif/tests/write-files/finbif_cache_file_3db6439c7601e4401b8a27a2094919a3 |only finbif-0.7.0/finbif/vignettes/finbif.Rmd | 30 - finbif-0.7.0/finbif/vignettes/v04_metadata.Rmd | 2 finbif-0.7.0/finbif/vignettes/v05_filtering.Rmd | 130 +++--- 47 files changed, 1171 insertions(+), 524 deletions(-)
More information about implicitExpansion at CRAN
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More information about historicalborrowlong at CRAN
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Title: Access to the 'Gitlab' API
Description: Provides R functions to access the API of the project and
repository management web application 'GitLab'. For many common tasks
(repository file access, issue assignment and status, commenting)
convenience wrappers are provided, and in addition the full API can be
used by specifying request locations. 'GitLab' is open-source software
and can be self-hosted or used on <https://about.gitlab.com>.
Author: Jirka Lewandowski [aut],
Sebastien Rochette [aut, cre]
Maintainer: Sebastien Rochette <sebastien@thinkr.fr>
Diff between gitlabr versions 2.0.0 dated 2021-08-05 and 2.0.1 dated 2022-09-13
DESCRIPTION | 26 - MD5 | 82 ++--- NAMESPACE | 2 NEWS.md | 11 R/ci.R | 12 R/connect.R | 2 R/gitlab_api.R | 17 - R/projects_and_repos.R | 20 + README.md | 113 ++----- build/vignette.rds |binary inst/doc/a-quick-start-guide-to-gitlabr.Rmd | 7 inst/doc/a-quick-start-guide-to-gitlabr.html | 285 +++++++++++++++++- inst/doc/b-projects.Rmd | 13 inst/doc/b-projects.html | 241 ++++++++++++++- inst/doc/c-alternative-connection-to-projects.R | 20 + inst/doc/c-alternative-connection-to-projects.Rmd | 54 +++ inst/doc/c-alternative-connection-to-projects.html | 285 +++++++++++++++++- inst/doc/d-go-further-understand-and-build.html | 286 +++++++++++++++++- inst/doc/z-gitlabr-v2.html | 234 ++++++++++++++- inst/gitlab-ci/bookdown-production.yml | 90 ++++- inst/gitlab-ci/bookdown.yml | 35 -- inst/gitlab-ci/check-coverage-pkgdown-renv.yml | 52 ++- inst/gitlab-ci/check-coverage-pkgdown.yml | 38 +- man/gitlab.Rd | 14 man/gitlabr-package.Rd | 9 man/gl_list_projects.Rd | 7 man/gl_shiny_login.Rd | 4 man/use_gitlab_ci.Rd | 6 tests/testthat/gitlab-ci.yml | 36 +- tests/testthat/helper.R | 1 tests/testthat/test_branches.R | 4 tests/testthat/test_ci.R | 8 tests/testthat/test_comments.R | 16 - tests/testthat/test_connection_env.R | 318 +++++++++++++++------ tests/testthat/test_files.R | 18 - tests/testthat/test_issues.R | 6 tests/testthat/test_login_module.R | 4 tests/testthat/test_pagination.R | 2 tests/testthat/test_projects_repos.R | 31 +- vignettes/a-quick-start-guide-to-gitlabr.Rmd | 7 vignettes/b-projects.Rmd | 13 vignettes/c-alternative-connection-to-projects.Rmd | 54 +++ 42 files changed, 1987 insertions(+), 496 deletions(-)
More information about historicalborrow at CRAN
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Title: Widen, Process, then Re-Tidy Data
Description: Encapsulates the pattern of untidying data into a wide
matrix, performing some processing, then turning it back into a tidy
form. This is useful for several operations such as co-occurrence
counts, correlations, or clustering that are mathematically convenient
on wide matrices.
Author: David Robinson [aut],
Kanishka Misra [ctb],
Julia Silge [aut, cre]
Maintainer: Julia Silge <julia.silge@gmail.com>
Diff between widyr versions 0.1.4 dated 2021-08-12 and 0.1.5 dated 2022-09-13
DESCRIPTION | 51 ++++--- MD5 | 56 ++++---- NEWS.md | 16 +- R/cor_sparse.R | 4 R/pairwise_cor.R | 10 - R/pairwise_count.R | 14 +- R/pairwise_delta.R | 12 - R/pairwise_dist.R | 12 - R/pairwise_pmi.R | 12 - R/pairwise_similarity.R | 10 - R/squarely.R | 12 - R/widely.R | 36 ++++- R/widely_hclust.R | 4 R/widely_kmeans.R | 6 R/widely_svd.R | 12 - README.md | 126 ++++++++++++------- build/vignette.rds |binary inst/doc/intro.html | 275 +++++++++++++++++++++++++++++++++++++++---- inst/doc/united_nations.R | 4 inst/doc/united_nations.Rmd | 4 inst/doc/united_nations.html | 256 ++++++++++++++++++++++++++++++++++++---- man/pairwise_count.Rd | 2 man/pairwise_delta.Rd | 6 man/pairwise_dist.Rd | 6 man/pairwise_similarity.Rd | 4 man/squarely.Rd | 16 +- man/widely.Rd | 10 - man/widely_kmeans.Rd | 6 vignettes/united_nations.Rmd | 4 29 files changed, 743 insertions(+), 243 deletions(-)
Title: R Bindings for Calling the 'Earth Engine' API
Description: Earth Engine <https://earthengine.google.com/> client library for R. All
of the 'Earth Engine' API classes, modules, and functions are made available. Additional
functions implemented include importing (exporting) of Earth Engine spatial objects,
extraction of time series, interactive map display, assets management interface,
and metadata display. See <https://r-spatial.github.io/rgee/> for further details.
Author: Cesar Aybar [aut, cre] ,
Wu Qiusheng [ctb] ,
Lesly Bautista [ctb] ,
Roy Yali [ctb] ,
Antony Barja [ctb] ,
Kevin Ushey [ctb],
Jeroen Ooms [ctb] ,
Tim Appelhans [ctb],
JJ Allaire [ctb],
Yuan Tang [ctb],
Samapriya Roy [ctb],
MariaElena Adauto [ctb] ,
Ga [...truncated...]
Maintainer: Cesar Aybar <csaybar@gmail.com>
Diff between rgee versions 1.1.4 dated 2022-07-16 and 1.1.5 dated 2022-09-13
DESCRIPTION | 6 MD5 | 16 R/ee_version.R | 2 inst/dataset.json | 2 inst/doc/rgee01.html | 2 inst/doc/rgee06.R | 46 inst/doc/rgee06.Rmd | 6 inst/doc/rgee06.html | 4964 --------------------------------------------------- vignettes/rgee06.Rmd | 6 9 files changed, 43 insertions(+), 5007 deletions(-)
Title: Sparse and Dense Matrix Classes and Methods
Description: A rich hierarchy of matrix classes, including triangular,
symmetric, and diagonal matrices, both dense and sparse and with
pattern, logical and numeric entries. Numerous methods for and
operations on these matrices, using 'LAPACK' and 'SuiteSparse' libraries.
Author: Douglas Bates [aut],
Martin Maechler [aut, cre] ,
Mikael Jagan [aut] ,
Timothy A. Davis [ctb] )),
Jens Oehlschlaegel [ctb] ),
Jason Riedy [ctb] and onenormest for octave, Copyright:
Regents of the University of California),
R Core Team [ctb]
Maintainer: Martin Maechler <mmaechler+Matrix@gmail.com>
Diff between Matrix versions 1.5-0 dated 2022-09-10 and 1.5-1 dated 2022-09-13
DESCRIPTION | 8 ++++---- MD5 | 36 ++++++++++++++++++------------------ R/denseMatrix.R | 8 ++++---- R/diagMatrix.R | 4 ++-- R/indMatrix.R | 4 ++-- R/sparseMatrix.R | 4 ++-- R/zzz.R | 4 ++-- inst/NEWS.Rd | 12 +++++++++++- inst/doc/Comparisons.pdf |binary inst/doc/Design-issues.pdf |binary inst/doc/Intro2Matrix.pdf |binary inst/doc/Introduction.pdf |binary inst/doc/sparseModels.pdf |binary src/Csparse.c | 4 ++-- src/Csparse.h | 4 ++-- src/Mutils.c | 1 + src/init.c | 6 +++--- src/sparse.c | 10 ++++++---- tests/Simple.R | 2 +- 19 files changed, 60 insertions(+), 47 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-16 1.6.5
2022-03-30 1.6.4
2021-11-04 1.6.3
2020-12-15 1.6.2
2020-08-13 1.6.1
2020-07-15 1.6.0
2020-06-17 1.5.1
2020-04-13 1.5.0
2020-02-21 1.4.1
2020-01-24 1.4.0
2019-11-18 1.3.0
2019-10-17 1.2.0
2019-09-18 1.1.0
2019-08-24 1.0.0
Title: Replication Timing Profiling using DNA Copy Number
Description: Create, Plot and Compare Replication Timing Profiles. The method is described in Muller et al., (2014) <doi: 10.1093/nar/gkt878>.
Author: Dzmitry G Batrakou
Maintainer: Dzmitry G Batrakou <d.batrakou@gmail.com>
Diff between Repliscope versions 1.1.0 dated 2019-07-15 and 1.1.1 dated 2022-09-13
DESCRIPTION | 10 MD5 | 66 +-- NAMESPACE | 1 NEWS.md | 39 + R/Dbf4myc.R | 80 +-- R/MFAseq.R | 6 R/TrepDF.R | 56 +- R/W303.R | 76 +-- R/W303_G2.R | 62 +- R/W303_S.R | 62 +- R/W303norm.R | 80 +-- R/plotCoverage.R | 241 +++++------ R/plotGenome.R | 1029 +++++++++++++++++++++++------------------------ R/plotTrep.R | 231 +++++----- R/sacCer3.R | 58 +- R/sortSeq.R | 96 ++-- R/syncSeq.R | 114 ++--- build/vignette.rds |binary inst/doc/Repliscope.R | 26 - inst/doc/Repliscope.html | 915 +++++++++++++++++++++-------------------- man/Dbf4myc.Rd | 18 man/MFAseq.Rd | 12 man/TrepDF.Rd | 8 man/W303.Rd | 18 man/W303_G2.Rd | 14 man/W303_S.Rd | 14 man/W303norm.Rd | 18 man/guide.Rd | 6 man/normaliseRatio.Rd | 3 man/plotGenome.Rd | 22 - man/rmOutliers.Rd | 3 man/sacCer3.Rd | 10 man/sortSeq.Rd | 22 - man/syncSeq.Rd | 22 - 34 files changed, 1754 insertions(+), 1684 deletions(-)
Title: Meta-Analysis of Studies with Non-Statistically Significant
Unreported Effects
Description: Novel method to unbiasedly include studies with Non-statistically Significant Unreported Effects (NSUEs) in a meta-analysis. First, the method calculates the interval where the unreported effects (e.g., t-values) should be according to the threshold of statistical significance used in each study. Afterwards, the method uses maximum likelihood techniques to impute the expected effect size of each study with NSUEs, accounting for between-study heterogeneity and potential covariates. Multiple imputations of the NSUEs are then randomly created based on the expected value, variance, and statistical significance bounds. Finally, it conducts a restricted-maximum likelihood random-effects meta-analysis separately for each set of imputations and it conducts estimations from these meta-analyses. Please read the reference in 'metansue' for details of the procedure.
Author: Joaquim Radua
Maintainer: Joaquim Radua <radua@recerca.clinic.cat>
Diff between metansue versions 2.4 dated 2020-04-12 and 2.5 dated 2022-09-13
DESCRIPTION | 12 +-- MD5 | 16 ++--- NEWS | 8 ++ R/source.R | 168 ++++++++++++++++++++++++++++++++----------------------- inst/CITATION | 4 - man/leave1out.Rd | 6 - man/meta.Rd | 6 - man/metabias.Rd | 6 - man/nsue.Rd | 6 - 9 files changed, 136 insertions(+), 96 deletions(-)
Title: Convolution-Type Smoothed Quantile Regression
Description: Estimation and inference for conditional linear quantile regression models using a convolution smoothed approach. In the low-dimensional setting, efficient gradient-based methods are employed for fitting both a single model and a regression process over a quantile range. Normal-based and (multiplier) bootstrap confidence intervals for all slope coefficients are constructed. In high dimensions, the conquer method is complemented with flexible types of penalties (Lasso, elastic-net, group lasso, sparse group lasso, scad and mcp) to deal with complex low-dimensional structures.
Author: Xuming He [aut],
Xiaoou Pan [aut, cre],
Kean Ming Tan [aut],
Wen-Xin Zhou [aut]
Maintainer: Xiaoou Pan <xip024@ucsd.edu>
Diff between conquer versions 1.3.0 dated 2022-03-21 and 1.3.1 dated 2022-09-13
DESCRIPTION | 10 MD5 | 36 - NAMESPACE | 2 R/RcppExports.R | 456 ++++++------ R/smqr.R | 382 +++++++--- README.md | 80 ++ man/conquer.Rd | 8 man/conquer.cv.reg.Rd | 22 man/conquer.process.Rd | 10 man/conquer.reg.Rd | 6 src/RcppExports.cpp | 1754 ++++++++++++++++++++++--------------------------- src/basicOp.h | 2 src/defFun.cpp | 10 src/highdGauss.cpp | 357 ++------- src/highdLogistic.cpp | 357 ++------- src/highdPara.cpp | 357 ++------- src/highdTrian.cpp | 357 ++------- src/highdUnif.cpp | 357 ++------- src/lowd.cpp | 1319 +++++++++++++++++++++++++++++++++--- 19 files changed, 3050 insertions(+), 2832 deletions(-)
Title: Formulations of the International Association for the Properties
of Water and Steam
Description: Implementation of some of the formulations for the thermodynamic
and transport properties released by the International Association for
the Properties of Water and Steam (IAPWS). More specifically, the
releases referenced R1-76(2014), R6-95(2018), R7-97(2012), R8-97,
R12-08 and R15-11 at <http://iapws.org>.
Author: Jonathan Debove [aut, cre]
Maintainer: Jonathan Debove <jondebove@gmail.com>
Diff between iapws versions 0.11 dated 2022-09-06 and 0.12 dated 2022-09-13
DESCRIPTION | 18 ++++++------ MD5 | 39 +++++++++++++++------------ NAMESPACE | 3 ++ R/checkArgs.R | 24 +++++++---------- R/iapws95.R | 4 +- R/if97.R | 2 - build |only inst |only man/iapws95.Rd | 26 +++++++++--------- man/iapws95_sat.Rd | 8 ++--- man/iapws95_state.Rd | 6 ++-- man/if97.Rd | 12 ++++---- man/if97_sat.Rd | 4 +- src/cond.c | 2 - src/iapws95.c | 47 +++++++++++++++++---------------- src/if97.c | 18 +++++++----- src/melt.c | 72 ++++++++++++++++++++++++++++++++++++++++++++------- src/melt.h | 17 ++++++++---- src/nroot.c | 9 +++--- src/visc.c | 1 vignettes |only 21 files changed, 190 insertions(+), 122 deletions(-)
Title: Convert Data from and to 'GeoJSON' or 'TopoJSON'
Description: Convert data to 'GeoJSON' or 'TopoJSON' from various R
classes, including vectors, lists, data frames, shape files, and
spatial classes. 'geojsonio' does not aim to replace packages like
'sp', 'rgdal', 'rgeos', but rather aims to be a high level client to
simplify conversions of data from and to 'GeoJSON' and 'TopoJSON'.
Author: Scott Chamberlain [aut],
Andy Teucher [aut],
Michael Mahoney [aut, cre]
Maintainer: Michael Mahoney <mike.mahoney.218@gmail.com>
Diff between geojsonio versions 0.9.4 dated 2021-01-13 and 0.9.5 dated 2022-09-13
geojsonio-0.9.4/geojsonio/tests/test-all.R |only geojsonio-0.9.5/geojsonio/DESCRIPTION | 56 - geojsonio-0.9.5/geojsonio/MD5 | 160 ++-- geojsonio-0.9.5/geojsonio/NEWS.md | 2 geojsonio-0.9.5/geojsonio/R/as.json.R | 25 geojsonio-0.9.5/geojsonio/R/as.location.R | 9 geojsonio-0.9.5/geojsonio/R/as_spatial_methods.R | 30 geojsonio-0.9.5/geojsonio/R/bounds.R | 18 geojsonio-0.9.5/geojsonio/R/centroid.R | 16 geojsonio-0.9.5/geojsonio/R/construction.R | 33 geojsonio-0.9.5/geojsonio/R/crs_convert.R | 18 geojsonio-0.9.5/geojsonio/R/file_to_geojson.r | 43 - geojsonio-0.9.5/geojsonio/R/geo_topo.R | 36 geojsonio-0.9.5/geojsonio/R/geojson_atomize.R | 92 +- geojsonio-0.9.5/geojsonio/R/geojson_json.R | 381 +++++----- geojsonio-0.9.5/geojsonio/R/geojson_list.R | 373 +++++---- geojsonio-0.9.5/geojsonio/R/geojson_read.R | 35 geojsonio-0.9.5/geojsonio/R/geojson_sf.R | 44 - geojsonio-0.9.5/geojsonio/R/geojson_sp.R | 46 - geojsonio-0.9.5/geojsonio/R/geojson_style.R | 143 ++- geojsonio-0.9.5/geojsonio/R/geojson_write.r | 222 +++-- geojsonio-0.9.5/geojsonio/R/geojsonio-package.r | 4 geojsonio-0.9.5/geojsonio/R/globals.r | 2 geojsonio-0.9.5/geojsonio/R/mapgist.R | 283 +++---- geojsonio-0.9.5/geojsonio/R/mapleaflet.R | 99 +- geojsonio-0.9.5/geojsonio/R/onLoad.R | 6 geojsonio-0.9.5/geojsonio/R/postgis.R | 75 - geojsonio-0.9.5/geojsonio/R/projections.r | 57 - geojsonio-0.9.5/geojsonio/R/rbindfill.R | 107 +- geojsonio-0.9.5/geojsonio/R/topojson_json.R | 142 ++- geojsonio-0.9.5/geojsonio/R/topojson_list.R | 122 +-- geojsonio-0.9.5/geojsonio/R/topojson_read.R | 15 geojsonio-0.9.5/geojsonio/R/topojson_write.R | 348 ++++----- geojsonio-0.9.5/geojsonio/R/zzz.r | 321 ++++---- geojsonio-0.9.5/geojsonio/man/as.json.Rd | 4 geojsonio-0.9.5/geojsonio/man/bounds.Rd | 12 geojsonio-0.9.5/geojsonio/man/centroid.Rd | 10 geojsonio-0.9.5/geojsonio/man/file_to_geojson.Rd | 12 geojsonio-0.9.5/geojsonio/man/geo2topo.Rd | 12 geojsonio-0.9.5/geojsonio/man/geojson-add.Rd | 22 geojsonio-0.9.5/geojsonio/man/geojson_atomize.Rd | 40 - geojsonio-0.9.5/geojsonio/man/geojson_json.Rd | 159 ++-- geojsonio-0.9.5/geojsonio/man/geojson_list.Rd | 135 ++- geojsonio-0.9.5/geojsonio/man/geojson_read.Rd | 17 geojsonio-0.9.5/geojsonio/man/geojson_sf.Rd | 42 - geojsonio-0.9.5/geojsonio/man/geojson_sp.Rd | 42 - geojsonio-0.9.5/geojsonio/man/geojson_style.Rd | 70 + geojsonio-0.9.5/geojsonio/man/geojson_write.Rd | 78 +- geojsonio-0.9.5/geojsonio/man/map_gist.Rd | 249 +++--- geojsonio-0.9.5/geojsonio/man/map_leaf.Rd | 80 +- geojsonio-0.9.5/geojsonio/man/postgis.Rd | 51 - geojsonio-0.9.5/geojsonio/man/projections.Rd | 18 geojsonio-0.9.5/geojsonio/man/topojson_json.Rd | 126 +-- geojsonio-0.9.5/geojsonio/man/topojson_list.Rd | 102 +- geojsonio-0.9.5/geojsonio/tests/testthat.R |only geojsonio-0.9.5/geojsonio/tests/testthat/helper-geojsonio.R | 2 geojsonio-0.9.5/geojsonio/tests/testthat/test-as.json.R | 40 - geojsonio-0.9.5/geojsonio/tests/testthat/test-as.location.R | 8 geojsonio-0.9.5/geojsonio/tests/testthat/test-bounds.R | 10 geojsonio-0.9.5/geojsonio/tests/testthat/test-centroid.R | 12 geojsonio-0.9.5/geojsonio/tests/testthat/test-construction.R | 30 geojsonio-0.9.5/geojsonio/tests/testthat/test-file_to_geojson.R | 113 +- geojsonio-0.9.5/geojsonio/tests/testthat/test-geo_topo.R | 17 geojsonio-0.9.5/geojsonio/tests/testthat/test-geojson_atomize.R | 26 geojsonio-0.9.5/geojsonio/tests/testthat/test-geojson_json.R | 128 ++- geojsonio-0.9.5/geojsonio/tests/testthat/test-geojson_list.R | 210 +++-- geojsonio-0.9.5/geojsonio/tests/testthat/test-geojson_read.R | 18 geojsonio-0.9.5/geojsonio/tests/testthat/test-geojson_sf.R | 30 geojsonio-0.9.5/geojsonio/tests/testthat/test-geojson_sp.R | 30 geojsonio-0.9.5/geojsonio/tests/testthat/test-geojson_write.R | 121 +-- geojsonio-0.9.5/geojsonio/tests/testthat/test-map_gist.R | 70 - geojsonio-0.9.5/geojsonio/tests/testthat/test-mapleaflet.R | 54 - geojsonio-0.9.5/geojsonio/tests/testthat/test-onload.R | 6 geojsonio-0.9.5/geojsonio/tests/testthat/test-pretty.R | 12 geojsonio-0.9.5/geojsonio/tests/testthat/test-projections.R | 15 geojsonio-0.9.5/geojsonio/tests/testthat/test-rbind_fill.R | 12 geojsonio-0.9.5/geojsonio/tests/testthat/test-sf_classes.R | 255 +++--- geojsonio-0.9.5/geojsonio/tests/testthat/test-spatial_methods.R | 37 geojsonio-0.9.5/geojsonio/tests/testthat/test-topojson_json.R | 30 geojsonio-0.9.5/geojsonio/tests/testthat/test-topojson_list.R | 30 geojsonio-0.9.5/geojsonio/tests/testthat/test-topojson_read.R | 17 geojsonio-0.9.5/geojsonio/tests/testthat/test-topojson_write.R | 1 82 files changed, 3376 insertions(+), 2602 deletions(-)