Title: Converts 'MultiQC' Reports into Tidy Data Frames
Description: Provides the means to convert 'multiqc_data.json' files,
produced by the wonderful 'MultiQC' tool, into tidy data frames for downstream
analysis in R. This analysis might involve cohort analysis, quality control visualisation,
change-point detection, statistical process control, clustering, or any other
type of quality analysis.
Author: Michael Milton
Maintainer: Michael Milton <michael.r.milton@gmail.com>
Diff between TidyMultiqc versions 1.0.2 dated 2022-02-10 and 1.0.3 dated 2022-09-24
DESCRIPTION | 6 MD5 | 18 NEWS.md | 34 R/multiqc.R | 2 build/vignette.rds |binary inst/doc/TidyMultiqc.Rmd | 4 inst/doc/TidyMultiqc.html | 1489 +++++++++++++++++++++++++++- inst/extdata/general_list/multiqc_data.json | 41 tests/testthat/test-edge-cases.R | 2 vignettes/TidyMultiqc.Rmd | 4 10 files changed, 1552 insertions(+), 48 deletions(-)
Title: Bayesian Mediation Analysis
Description: We perform general mediation analysis in the Bayesian setting using the methods described in Yu and Li (2022, ISBN:9780367365479). With the package, the mediation analysis can be performed on different types of outcomes (e.g., continuous, binary, categorical, or time-to-event), with default or user-defined priors and predictive models. The Bayesian estimates and credible sets of mediation effects are reported as analytic results.
Author: Qingzhao Yu [aut, cre, cph],
Bin Li [aut]
Maintainer: Qingzhao Yu <qyu@lsuhsc.edu>
Diff between BayesianMediationA versions 1.0 dated 2022-08-18 and 1.0.1 dated 2022-09-24
DESCRIPTION | 15 ++++++++++----- MD5 | 24 +++++++++++++++++++++--- build |only inst |only man/BayesianMediationA-package.Rd | 4 +++- man/data_org.Rd | 4 ++-- vignettes |only 7 files changed, 36 insertions(+), 11 deletions(-)
More information about BayesianMediationA at CRAN
Permanent link
Title: Secure Shell (SSH) Client for R
Description: Connect to a remote server over SSH to transfer files via SCP,
setup a secure tunnel, or run a command or script on the host while
streaming stdout and stderr directly to the client.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between ssh versions 0.8.0 dated 2021-05-03 and 0.8.1 dated 2022-09-24
DESCRIPTION | 6 MD5 | 18 NEWS | 3 R/connect.R | 2 build/vignette.rds |binary configure | 2 inst/doc/intro.html | 1526 +++++++++++++++++++++++++++++++++++++++++++++++----- src/myssh.h | 10 src/scp.c | 2 src/tunnel.c | 3 10 files changed, 1433 insertions(+), 139 deletions(-)
Title: Semi-Automatic Preprocessing of Messy Data with Change Tracking
for Dataset Cleaning
Description: Tools for assessing data quality, performing exploratory analysis, and
semi-automatic preprocessing of messy data with change tracking for integral dataset cleaning.
Author: David Hervas Marin
Maintainer: David Hervas Marin <ddhervas@yahoo.es>
Diff between clickR versions 0.8.0 dated 2021-08-10 and 0.8.3 dated 2022-09-24
DESCRIPTION | 8 +-- MD5 | 33 ++++++++------- NAMESPACE | 1 NEWS | 10 ++++ R/fix_functions.R | 95 +++++++++++++++++++++++++++++++++++++++------- man/bivariate_outliers.Rd | 48 +++++++++++------------ man/f_replace.Rd |only man/fix_NA.Rd | 54 +++++++++++++------------- man/fix_all.Rd | 34 ++++++++-------- man/fix_concat.Rd | 50 ++++++++++++------------ man/fix_dates.Rd | 89 ++++++++++++++++++++++--------------------- man/fix_factors.Rd | 60 +++++++++++++++-------------- man/fix_levels.Rd | 86 ++++++++++++++++++++--------------------- man/fix_numerics.Rd | 64 +++++++++++++++--------------- man/manual_fix.Rd | 48 +++++++++++------------ man/nice_names.Rd | 6 ++ man/remove_empty.Rd | 46 ++++++++++++---------- man/text_date.Rd | 32 +++++++-------- 18 files changed, 430 insertions(+), 334 deletions(-)
Title: Record Linkage Toolkit
Description: Functions to assist in performing probabilistic record linkage and
deduplication: generating pairs, comparing records, em-algorithm for
estimating m- and u-probabilities
(I. Fellegi & A. Sunter (1969) <doi:10.1080/01621459.1969.10501049>,
T.N. Herzog, F.J. Scheuren, & W.E. Winkler (2007),
"Data Quality and Record Linkage Techniques", ISBN:978-0-387-69502-0),
forcing one-to-one matching. Can also be
used for pre- and post-processing for machine learning methods for record
linkage. Focus is on memory, CPU performance and flexibility.
Author: Jan van der Laan [aut, cre]
Maintainer: Jan van der Laan <r@eoos.dds.nl>
Diff between reclin2 versions 0.1.1 dated 2022-01-07 and 0.2.0 dated 2022-09-24
DESCRIPTION | 8 MD5 | 53 - NAMESPACE | 5 NEWS |only R/cluster_collect.R | 2 R/cluster_merge_pairs.R |only R/cluster_pair.R | 5 R/cluster_pair_blocking.R | 5 R/cluster_pair_minsim.R | 3 R/distribute_over_cluster.R |only R/merge_pairs.R |only R/pair_minsim.R | 10 R/set_seed.R |only R/zzz.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/deduplication.html | 546 +++++++-------- inst/doc/introduction.html | 665 +++++++++--------- inst/doc/record_linkage_using_machine_learning.html | 589 ++++++++-------- inst/doc/using_a_cluster_for_record_linkage.html | 717 ++++++++++---------- man/cluster_pair.Rd | 2 man/cluster_pair_blocking.Rd | 2 man/merge_pairs.Rd |only man/pair_minsim.Rd | 7 tests/test_cluster_pair.R | 16 tests/test_cluster_pair_blocking.R | 8 tests/test_cluster_pair_minsim.R | 8 tests/test_distribute_over_cluster.R |only tests/test_merge_pairs.R |only tests/test_pair_minsim.R | 10 tests/test_set_seed.R |only vignettes/style.css | 20 32 files changed, 1416 insertions(+), 1267 deletions(-)
Title: Exploration of Multiple Biomarker Responses using Effect Size
Description: Summarize multiple biomarker responses of aquatic organisms to
contaminants using Cliff’s delta, as described in Pham & Sokolova (2022)
<doi:10.1002/ieam.4676>.
Author: Duy Nghia Pham [aut, cre] ,
Inna M. Sokolova [ths]
Maintainer: Duy Nghia Pham <nghiapham@yandex.com>
Diff between mbRes versions 0.1.4 dated 2022-08-24 and 0.1.5 dated 2022-09-24
DESCRIPTION | 14 +++++++------- MD5 | 7 ++++--- R/mbRes-package.R | 5 +++-- inst |only man/mbRes-package.Rd | 5 +++-- 5 files changed, 17 insertions(+), 14 deletions(-)
Title: Plot Scaled 'ggplot' Representations of Sports Playing Surfaces
Description: Create scaled 'ggplot' representations of playing surfaces.
Playing surfaces are drawn pursuant to rule-book specifications.
This package should be used as a baseline plot for displaying any type of
tracking data.
Author: Ross Drucker [aut, cre]
Maintainer: Ross Drucker <ross.a.drucker@gmail.com>
Diff between sportyR versions 2.0.0 dated 2022-08-15 and 2.0.1 dated 2022-09-24
sportyR-2.0.0/sportyR/LICENSE |only sportyR-2.0.1/sportyR/DESCRIPTION | 12 - sportyR-2.0.1/sportyR/MD5 | 27 +- sportyR-2.0.1/sportyR/NEWS.md | 69 +++++- sportyR-2.0.1/sportyR/R/features-curling.R | 25 +- sportyR-2.0.1/sportyR/R/geom-curling.R | 23 +- sportyR-2.0.1/sportyR/R/geom-football.R | 4 sportyR-2.0.1/sportyR/R/geom-hockey.R | 70 +++++- sportyR-2.0.1/sportyR/inst/doc/animating-tracking-data.html | 111 +++++------ sportyR-2.0.1/sportyR/inst/doc/customize-plot.html | 111 +++++------ sportyR-2.0.1/sportyR/inst/doc/plotting-tracking-data.html | 111 +++++------ sportyR-2.0.1/sportyR/inst/doc/sportyR.Rmd | 6 sportyR-2.0.1/sportyR/inst/doc/sportyR.html | 121 +++++------- sportyR-2.0.1/sportyR/man/curling_end.Rd | 3 sportyR-2.0.1/sportyR/vignettes/sportyR.Rmd | 6 15 files changed, 403 insertions(+), 296 deletions(-)
Title: Ocean Biodiversity Information System (OBIS) Client
Description: Client for the Ocean Biodiversity Information System (<https://obis.org>).
Author: Pieter Provoost [cre, aut],
Samuel Bosch [aut],
Ward Appeltans [ctb],
OBIS [cph]
Maintainer: Pieter Provoost <pieterprovoost@gmail.com>
Diff between robis versions 2.8.2 dated 2021-10-13 and 2.11.3 dated 2022-09-24
DESCRIPTION | 12 - MD5 | 40 ++- NAMESPACE | 5 NEWS.md | 24 ++ R/dataset.R | 8 R/dna.R | 43 --- R/mof.R | 43 --- R/occurrence.R | 13 - R/robis.R | 4 R/util.R | 91 ++++++++ README.md | 2 build/vignette.rds |binary inst/doc/getting-started.R | 58 ----- inst/doc/getting-started.Rmd | 8 inst/doc/getting-started.html | 406 +++++++------------------------------ man/dataset.Rd | 5 man/figures |only man/generate_citation.Rd |only man/occurrence.Rd | 11 - man/unnest_extension.Rd |only tests/testthat/test_measurements.R | 6 vignettes/getting-started.Rmd | 8 22 files changed, 268 insertions(+), 519 deletions(-)
Title: Time Series Clustering Along with Optimizations for the Dynamic
Time Warping Distance
Description: Time series clustering along with optimized techniques related
to the Dynamic Time Warping distance and its corresponding lower bounds.
Implementations of partitional, hierarchical, fuzzy, k-Shape and TADPole
clustering are available. Functionality can be easily extended with
custom distance measures and centroid definitions. Implementations of
DTW barycenter averaging, a distance based on global alignment kernels,
and the soft-DTW distance and centroid routines are also provided.
All included distance functions have custom loops optimized for the
calculation of cross-distance matrices, including parallelization support.
Several cluster validity indices are included.
Author: Alexis Sarda-Espinosa
Maintainer: Alexis Sarda <alexis.sarda@gmail.com>
Diff between dtwclust versions 5.5.10 dated 2022-04-14 and 5.5.11 dated 2022-09-24
DESCRIPTION | 14 +-- MD5 | 34 +++---- NAMESPACE | 1 R/CLUSTERING-cvi-evaluators.R | 16 ++- R/CLUSTERING-ddist2.R | 2 R/GENERICS-cvi.R | 2 R/S4-Distmat.R | 3 R/S4-tsclustFamily.R | 22 +++- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 5 - inst/doc/dtwclust.pdf |binary inst/doc/parallelization-considerations.html | 124 ++++++++++++++------------- inst/doc/timing-experiments.html | 32 +++--- man/compare_clusterings.Rd | 6 - man/cvi.Rd | 2 man/cvi_evaluators.Rd | 3 man/tsclustFamily-class.Rd | 25 +++-- 18 files changed, 161 insertions(+), 130 deletions(-)
Title: Methods for Partial Linear Single Index Model
Description: Estimation, hypothesis tests, and variable selection in partially linear single-index models. Please see H. (2010) at <doi:10.1214/10-AOS835> for more details.
Author: Shunyao Wu, Qi Zhang, Zhiruo Li, Hua Liang
Maintainer: Shunyao Wu <wushunyao@qdu.edu.cn>
Diff between PLSiMCpp versions 1.0.3 dated 2022-08-20 and 1.0.4 dated 2022-09-24
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/plsim.MAVE.r | 2 -- R/plsim.vs.hard.r | 2 +- 4 files changed, 8 insertions(+), 10 deletions(-)
Title: Reproducible Input-Output Economics Analysis, Economic and
Environmental Impact Assessment with Empirical Data
Description: Pre-processing and basic analytical tasks related to working
with Eurostat's symmetric input-output tables and provide basic
input-output economics calculations. The package is part of rOpenGov
<http://ropengov.github.io/> to open source open government initiatives.
Author: Daniel Antal [aut, cre] ,
Kasia Kulma [ctb] ,
Pyry Kantanen [ctb]
Maintainer: Daniel Antal <daniel.antal@dataobservatory.eu>
Diff between iotables versions 0.9 dated 2022-02-10 and 0.9.1 dated 2022-09-24
DESCRIPTION | 12 MD5 | 118 +-- NEWS.md | 11 R/airpol_get.R | 2 R/check_digits.R | 14 R/coefficient_matrix_create.R | 2 R/data-croatia_2010_1700.R | 2 R/data-croatia_2010_1800.R | 2 R/data-croatia_2010_1900.R | 2 R/data-employment_metadata.R | 6 R/data-uk_2010_data.R | 2 R/employment_get.R | 93 +- R/indirect_effects_create.R | 24 R/input_indicator_create.R | 2 R/iotable_get.R | 906 +++++++++++++------------- R/iotable_year_get.R | 20 R/iotables.R | 2 R/iotables_read_tempdir.R | 5 R/output_get.R | 3 R/primary_input_get.R | 3 R/round_table.R | 12 R/sysdata.rda |binary README.md | 32 build/vignette.rds |binary data/employment_metadata.rda |only data/germany_1995.rda |binary data/germany_airpol.rda |binary inst/WORDLIST |only inst/doc/environmental_impact.Rmd | 5 inst/doc/environmental_impact.html | 335 ++++++++- inst/doc/intro.Rmd | 7 inst/doc/intro.html | 534 ++++++++++++--- inst/doc/united_kingdom_2010.Rmd | 4 inst/doc/united_kingdom_2010.html | 525 ++++++++++++++- inst/doc/working_with_eurostat.Rmd | 16 inst/doc/working_with_eurostat.html | 404 ++++++++++- man/airpol_get.Rd | 2 man/check_digits.Rd | 6 man/coefficient_matrix_create.Rd | 2 man/croatia_2010_1700.Rd | 2 man/croatia_2010_1800.Rd | 2 man/croatia_2010_1900.Rd | 2 man/employment_get.Rd | 8 man/employment_metadata.Rd | 2 man/figures/logo.png |binary man/figures/logo20.png |binary man/figures/logo_old.png |only man/indirect_effects_create.Rd | 4 man/input_indicator_create.Rd | 2 man/iotables.Rd | 2 man/iotables_read_tempdir.Rd | 25 man/output_get.Rd | 7 man/primary_input_get.Rd | 7 man/uk_2010_data.Rd | 2 tests/testthat/test-backward_linkages.R | 3 tests/testthat/test-indirect_effects_create.R |only tests/testthat/test-iotable_get.R | 9 tests/testthat/test-iotable_year_get.R | 15 vignettes/environmental_impact.Rmd | 5 vignettes/intro.Rmd | 7 vignettes/united_kingdom_2010.Rmd | 4 vignettes/working_with_eurostat.Rmd | 16 62 files changed, 2312 insertions(+), 927 deletions(-)
Title: Functions for Base Types and Core R and 'Tidyverse' Features
Description: A toolbox for working with base types, core R features
like the condition system, and core 'Tidyverse' features like tidy
evaluation.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
mikefc [cph] ,
Yann Collet [cph] ,
RStudio [cph, fnd]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between rlang versions 1.0.5 dated 2022-08-31 and 1.0.6 dated 2022-09-24
rlang-1.0.5/rlang/R/rlang.R |only rlang-1.0.6/rlang/DESCRIPTION | 6 - rlang-1.0.6/rlang/MD5 | 78 +++++++++--------- rlang-1.0.6/rlang/NAMESPACE | 1 rlang-1.0.6/rlang/NEWS.md | 21 ++++ rlang-1.0.6/rlang/R/arg.R | 2 rlang-1.0.6/rlang/R/cnd-abort.R | 44 +++++++--- rlang-1.0.6/rlang/R/cnd-handlers.R | 14 +-- rlang-1.0.6/rlang/R/cnd-last.R | 27 +----- rlang-1.0.6/rlang/R/cnd-signal.R | 2 rlang-1.0.6/rlang/R/compat-cli.R | 41 +++++++-- rlang-1.0.6/rlang/R/compat-downstream-deps.R | 17 +-- rlang-1.0.6/rlang/R/compat-obj-type.R | 24 +++-- rlang-1.0.6/rlang/R/compat-rlang.R | 21 ++-- rlang-1.0.6/rlang/R/compat-s3-register.R | 17 +-- rlang-1.0.6/rlang/R/compat-types-check.R | 68 ++++++++------- rlang-1.0.6/rlang/R/deparse.R | 6 - rlang-1.0.6/rlang/R/fn.R | 1 rlang-1.0.6/rlang/R/rlang-package.R |only rlang-1.0.6/rlang/R/session.R | 4 rlang-1.0.6/rlang/R/utils.R | 15 +++ rlang-1.0.6/rlang/man/abort.Rd | 2 rlang-1.0.6/rlang/man/format_error_call.Rd | 19 +++- rlang-1.0.6/rlang/man/rlang-package.Rd | 2 rlang-1.0.6/rlang/man/rmd/topic-error-chaining.Rmd | 2 rlang-1.0.6/rlang/man/topic-data-mask-programming.Rd | 3 rlang-1.0.6/rlang/man/topic-data-mask.Rd | 2 rlang-1.0.6/rlang/man/topic-error-chaining.Rd | 6 - rlang-1.0.6/rlang/man/try_fetch.Rd | 12 +- rlang-1.0.6/rlang/src/rlang/vec-lgl.c | 65 +++++++++++---- rlang-1.0.6/rlang/src/version.c | 2 rlang-1.0.6/rlang/tests/testthat/_snaps/arg.md | 3 rlang-1.0.6/rlang/tests/testthat/_snaps/c-api.md | 6 - rlang-1.0.6/rlang/tests/testthat/_snaps/cnd-abort.md | 15 ++- rlang-1.0.6/rlang/tests/testthat/_snaps/compat-cli.md | 36 ++++---- rlang-1.0.6/rlang/tests/testthat/_snaps/session.md | 12 ++ rlang-1.0.6/rlang/tests/testthat/_snaps/trace.md | 16 +-- rlang-1.0.6/rlang/tests/testthat/test-c-api.R | 15 ++- rlang-1.0.6/rlang/tests/testthat/test-deparse.R | 4 rlang-1.0.6/rlang/tests/testthat/test-fn.R | 7 + rlang-1.0.6/rlang/tests/testthat/test-session.R | 39 ++++----- 41 files changed, 407 insertions(+), 270 deletions(-)
Title: Pin, Discover and Share Resources
Description: Publish data sets, models, and other R objects, making it
easy to share them across projects and with your colleagues. You can
pin objects to a variety of "boards", including local folders (to
share on a networked drive or with 'DropBox'), 'RStudio' connect,
Amazon S3, and more.
Author: Julia Silge [cre, aut] ,
Hadley Wickham [aut] ,
Javier Luraschi [aut],
RStudio [cph, fnd]
Maintainer: Julia Silge <julia.silge@rstudio.com>
Diff between pins versions 1.0.2 dated 2022-08-23 and 1.0.3 dated 2022-09-24
DESCRIPTION | 23 ++++++---- MD5 | 51 ++++++++++++------------ NEWS.md | 17 +++++++- R/board_rsconnect.R | 8 ++- R/board_rsconnect_bundle.R | 4 + R/board_s3.R | 26 ++++++++---- R/meta.R | 2 R/pin-read-write.R | 15 ++++++- README.md | 4 - inst/doc/pins-update.Rmd | 2 inst/doc/pins-update.html | 18 ++++---- inst/doc/pins.Rmd | 2 inst/doc/pins.html | 22 +++++----- inst/doc/rsc.R | 3 - inst/doc/rsc.Rmd | 3 - man/board_s3.Rd | 8 +++ man/pins-package.Rd | 3 - tests/testthat/_snaps/board_azure_adls2.md |only tests/testthat/_snaps/board_azure_blob.md |only tests/testthat/_snaps/board_azure_file.md |only tests/testthat/_snaps/board_rsconnect_bundle.md | 2 tests/testthat/test-board_rsconnect.R | 1 tests/testthat/test-board_rsconnect_server.R | 2 tests/testthat/test-pin-read-write.R | 2 tests/testthat/test-pin.R | 1 vignettes/pins-update.Rmd | 2 vignettes/pins.Rmd | 2 vignettes/rsc.Rmd | 3 - 28 files changed, 144 insertions(+), 82 deletions(-)
Title: Angular Distance Weighting Interpolation
Description: The irregularly-spaced data are interpolated onto regular latitude-longitude grids by weighting each station according to its distance and angle from the center of a search radius.
Author: Panfeng Zhang [aut, cre]
Maintainer: Panfeng Zhang <zhangpanfeng@cug.edu.cn>
Diff between adw versions 0.2.0 dated 2022-09-22 and 0.2.1 dated 2022-09-24
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NEWS.md | 5 +++++ R/adw.R | 2 +- README.md |only man/adw.Rd | 2 +- 6 files changed, 16 insertions(+), 10 deletions(-)
Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package
supports the static site generator 'Hugo' (<https://gohugo.io>) best,
and it also supports 'Jekyll' (<https://jekyllrb.com>) and 'Hexo'
(<https://hexo.io>).
Author: Yihui Xie [aut, cre] ,
Christophe Dervieux [aut] ,
Alison Presmanes Hill [aut] ,
Amber Thomas [ctb],
Beilei Bian [ctb],
Brandon Greenwell [ctb],
Brian Barkley [ctb],
Deependra Dhakal [ctb],
Eric Nantz [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb] [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 1.12 dated 2022-09-15 and 1.13 dated 2022-09-24
blogdown-1.12/blogdown/tests/test-all.R |only blogdown-1.12/blogdown/tests/testit |only blogdown-1.13/blogdown/DESCRIPTION | 6 ++-- blogdown-1.13/blogdown/MD5 | 24 +++++++++-------- blogdown-1.13/blogdown/R/hugo.R | 42 ++++++++++++++++++++++--------- blogdown-1.13/blogdown/R/install.R | 11 ++++++-- blogdown-1.13/blogdown/R/utils.R | 12 +++++--- blogdown-1.13/blogdown/tests/test-ci |only blogdown-1.13/blogdown/tests/test-ci.R |only blogdown-1.13/blogdown/tests/test-cran |only blogdown-1.13/blogdown/tests/test-cran.R |only 11 files changed, 63 insertions(+), 32 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-22 3.1.1
2021-09-28 3.1.0
2021-07-13 3.0.1
2021-06-10 3.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-08 0.2.0
2021-09-07 0.1.0