Title: Implements the Leiden Algorithm via an R Interface
Description: An R interface to the Leiden algorithm, an iterative community detection algorithm on networks. The algorithm is designed to converge to a partition in which all subsets of all communities are locally optimally assigned, yielding communities guaranteed to be connected. The implementation proves to be fast, scales well, and can be run on graphs of millions of nodes (as long as they can fit in memory). The original implementation was constructed as a python interface "leidenalg" found here: <https://github.com/vtraag/leidenalg>. The algorithm was originally described in Traag, V.A., Waltman, L. & van Eck, N.J. "From Louvain to Leiden: guaranteeing well-connected communities". Sci Rep 9, 5233 (2019) <doi:10.1038/s41598-019-41695-z>.
Author: Peter Kharchenko [aut],
Viktor Petukhov [aut],
V.A. Traag [ctb],
Gabor Csardi [ctb],
Tamas Nepusz [ctb],
Minh Van Nguyen [ctb],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between leidenAlg versions 1.0.3 dated 2022-04-11 and 1.0.4 dated 2022-09-25
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NAMESPACE | 1 - R/communities.R | 1 - man/exampleGraph.Rd | 2 +- src/RcppExports.cpp | 1 - src/leiden.cpp | 5 +++++ src/leidenalg/RBConfigurationVertexPartition.cpp | 5 +++++ 8 files changed, 24 insertions(+), 17 deletions(-)
Title: Estimating and Testing Intergenerational Social Mobility Effect
Description: Estimate and test inter-generational social mobility effect on an outcome with cross-sectional or longitudinal data.
Author: Jiahui Xu [aut, cre],
Liying Luo [aut]
Maintainer: Jiahui Xu <jpx5053@psu.edu>
Diff between MCM versions 0.1.5 dated 2022-01-04 and 0.1.6 dated 2022-09-25
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/mcm.R | 41 +++++++++++++++++++++++++++++++++++------ man/mcm.Rd | 8 +++++--- tests/mcm_package_test.R | 1 + 5 files changed, 49 insertions(+), 17 deletions(-)
Title: Unconditional Exact Test
Description: Performs unconditional exact tests and power calculations for 2x2 contingency tables.
For comparing two independent proportions, performs Barnard's test (1945)
<doi:10.1038/156177a0> using the original CSM test (Barnard, 1947 <doi:10.1093/biomet/34.1-2.123>),
using Fisher's p-value referred to as Boschloo's test (1970) <doi:10.1111/j.1467-9574.1970.tb00104.x>,
or using a Z-statistic (Suissa and Shuster, 1985, <doi:10.2307/2981892>).
For comparing two binary proportions, performs unconditional exact test using McNemar's
Z-statistic (Berger and Sidik, 2003, <doi:10.1191/0962280203sm312ra>),
using McNemar's conditional p-value, using McNemar's Z-statistic with continuity correction,
or using CSM test. Calculates confidence intervals for the difference in proportion.
This package interacts with pre-computed data available through the ExactData R package,
which is available in a 'drat' repository.
Install the ExactData R package from GitHub at <https://pcal [...truncated...]
Author: Peter Calhoun [aut, cre]
Maintainer: Peter Calhoun <calhoun.peter@gmail.com>
Diff between Exact versions 3.1 dated 2021-11-26 and 3.2 dated 2022-09-25
Exact-3.1/Exact/R/multinomialCode.R |only Exact-3.2/Exact/DESCRIPTION | 8 +++---- Exact-3.2/Exact/MD5 | 31 ++++++++++++++++-------------- Exact-3.2/Exact/NAMESPACE | 2 - Exact-3.2/Exact/R/binomialCode.R | 6 +++-- Exact-3.2/Exact/R/checkParam.R | 5 ++++ Exact-3.2/Exact/R/confInt.R | 6 +++-- Exact-3.2/Exact/R/exact.reject.region.R | 2 - Exact-3.2/Exact/R/exact.test.R | 2 - Exact-3.2/Exact/R/maxPvalueMultinom.R |only Exact-3.2/Exact/R/moreExtreme.R | 10 ++++----- Exact-3.2/Exact/R/multinom.R |only Exact-3.2/Exact/R/multinomCode.R |only Exact-3.2/Exact/R/searchMaxProbMultinom.R |only Exact-3.2/Exact/R/zunpooled_TX.R | 4 +-- Exact-3.2/Exact/build/partial.rdb |binary Exact-3.2/Exact/inst/NEWS.Rd | 9 ++++++++ Exact-3.2/Exact/man/Exact-package.Rd | 2 + Exact-3.2/Exact/man/exact.test.Rd | 4 +-- 19 files changed, 57 insertions(+), 34 deletions(-)
Title: The CDK Libraries Packaged for R
Description: An R interface to the Chemistry Development Kit, a Java library
for chemoinformatics. Given the size of the library itself, this package is
not expected to change very frequently. To make use of the CDK within R, it is
suggested that you use the 'rcdk' package. Note that it is possible to directly
interact with the CDK using 'rJava'. However 'rcdk' exposes functionality in a more
idiomatic way. The CDK library itself is released as LGPL and the sources can be
obtained from <https://github.com/cdk/cdk>.
Author: Rajarshi Guha [aut],
Zachary Charlop-Powers [cre],
CDK Project [ctb, cph]
Maintainer: Zachary Charlop-Powers <zach.charlop.powers@gmail.com>
Diff between rcdklibs versions 2.3 dated 2020-03-08 and 2.8 dated 2022-09-25
rcdklibs-2.3/rcdklibs/NEWS |only rcdklibs-2.3/rcdklibs/inst/cont/cdk-2.3.jar |only rcdklibs-2.8/rcdklibs/DESCRIPTION | 12 - rcdklibs-2.8/rcdklibs/MD5 | 97 +++++++++- rcdklibs-2.8/rcdklibs/NEWS.md |only rcdklibs-2.8/rcdklibs/README.md |only rcdklibs-2.8/rcdklibs/inst/cont/beam-core-1.3.4.jar |only rcdklibs-2.8/rcdklibs/inst/cont/beam-func-1.3.4.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-atomtype-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-charges-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-cip-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-control-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-core-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-ctab-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-data-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-datadebug-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-depict-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-dict-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-diff-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-extra-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-fingerprint-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-forcefield-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-formula-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-fragment-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-group-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-hash-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-inchi-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-interfaces-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-io-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-ioformats-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-ionpot-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-isomorphism-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-jniinchi-support-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-legacy-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-libiocml-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-libiomd-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-model-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-pcore-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-pdb-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-pdbcml-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-qsar-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-qsaratomic-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-qsarbond-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-qsarcml-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-qsarionpot-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-qsarmolecular-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-qsarprotein-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-reaction-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-render-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-renderawt-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-renderbasic-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-renderextra-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-sdg-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-signature-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-silent-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-smarts-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-smiles-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-standard-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-structgen-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-tautomer-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cdk-valencycheck-2.8.jar |only rcdklibs-2.8/rcdklibs/inst/cont/cmlxom-4.3.jar |only rcdklibs-2.8/rcdklibs/inst/cont/commons-io-2.11.0.jar |only rcdklibs-2.8/rcdklibs/inst/cont/commons-lang3-3.12.0.jar |only rcdklibs-2.8/rcdklibs/inst/cont/commons-math-2.2.jar |only rcdklibs-2.8/rcdklibs/inst/cont/euclid-2.3.jar |only rcdklibs-2.8/rcdklibs/inst/cont/freehep-graphics2d-2.4.jar |only rcdklibs-2.8/rcdklibs/inst/cont/freehep-graphicsbase-2.4.jar |only rcdklibs-2.8/rcdklibs/inst/cont/freehep-graphicsio-2.4.jar |only rcdklibs-2.8/rcdklibs/inst/cont/freehep-graphicsio-pdf-2.4.jar |only rcdklibs-2.8/rcdklibs/inst/cont/freehep-graphicsio-ps-2.4.jar |only rcdklibs-2.8/rcdklibs/inst/cont/freehep-graphicsio-tests-2.4.jar |only rcdklibs-2.8/rcdklibs/inst/cont/freehep-io-2.2.2.jar |only rcdklibs-2.8/rcdklibs/inst/cont/jama-1.0.3.jar |only rcdklibs-2.8/rcdklibs/inst/cont/jgrapht-0.6.0.jar |only rcdklibs-2.8/rcdklibs/inst/cont/jna-5.10.0.jar |only rcdklibs-2.8/rcdklibs/inst/cont/jna-inchi-api-1.1.jar |only rcdklibs-2.8/rcdklibs/inst/cont/jna-inchi-core-1.1.jar |only rcdklibs-2.8/rcdklibs/inst/cont/jna-inchi-darwin-aarch64-1.1.jar |only rcdklibs-2.8/rcdklibs/inst/cont/jna-inchi-darwin-x86-64-1.1.jar |only rcdklibs-2.8/rcdklibs/inst/cont/jna-inchi-linux-arm-1.1.jar |only rcdklibs-2.8/rcdklibs/inst/cont/jna-inchi-linux-x86-1.1.jar |only rcdklibs-2.8/rcdklibs/inst/cont/jna-inchi-linux-x86-64-1.1.jar |only rcdklibs-2.8/rcdklibs/inst/cont/jna-inchi-win32-x86-1.1.jar |only rcdklibs-2.8/rcdklibs/inst/cont/jna-inchi-win32-x86-64-1.1.jar |only rcdklibs-2.8/rcdklibs/inst/cont/joda-time-2.11.0.jar |only rcdklibs-2.8/rcdklibs/inst/cont/log4j-1.2-api-2.18.0.jar |only rcdklibs-2.8/rcdklibs/inst/cont/log4j-api-2.18.0.jar |only rcdklibs-2.8/rcdklibs/inst/cont/log4j-core-2.18.0.jar |only rcdklibs-2.8/rcdklibs/inst/cont/serializer-2.7.2.jar |only rcdklibs-2.8/rcdklibs/inst/cont/signatures-1.1.jar |only rcdklibs-2.8/rcdklibs/inst/cont/tagsoup-1.2.1.jar |only rcdklibs-2.8/rcdklibs/inst/cont/vecmath-1.5.2.jar |only rcdklibs-2.8/rcdklibs/inst/cont/xalan-2.7.2.jar |only rcdklibs-2.8/rcdklibs/inst/cont/xercesImpl-2.12.2.jar |only rcdklibs-2.8/rcdklibs/inst/cont/xml-apis-1.4.01.jar |only rcdklibs-2.8/rcdklibs/inst/cont/xom-1.3.7.jar |only 97 files changed, 100 insertions(+), 9 deletions(-)
Title: Interface to the 'Open Science Framework' ('OSF')
Description: An interface for interacting with 'OSF' (<https://osf.io>). 'osfr'
enables you to access open research materials and data, or create and
manage your own private or public projects.
Author: Aaron Wolen [aut, cre] ,
Chris Hartgerink [aut] ,
Timothy York [ctb] ,
Ryan Hafen [ctb],
Brian Richards [ctb],
Courtney Soderberg [ctb] ,
Carl Boettiger [rev] ,
Heidi Seibold [rev]
Maintainer: Aaron Wolen <aaron@wolen.com>
Diff between osfr versions 0.2.8 dated 2020-02-17 and 0.2.9 dated 2022-09-25
DESCRIPTION | 21 - MD5 | 145 +++++-- NAMESPACE | 1 NEWS.md | 24 + R/osf_auth.R | 2 R/osf_create.R | 4 R/osf_download.R | 77 +-- R/osf_retrieve.R | 2 R/osf_tbl.R | 2 R/osf_upload.R | 12 R/osfr-package.R | 2 R/utils-accessors.R | 14 R/utils-wb-files.R | 18 README.md | 93 ++-- build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/auth.html | 165 +++++--- inst/doc/getting_started.Rmd | 104 ++--- inst/doc/getting_started.html | 506 +++++++++++++++---------- man/osf_auth.Rd | 8 man/osf_create.Rd | 4 man/osf_download.Rd | 6 man/osf_retrieve.Rd | 2 man/osf_upload.Rd | 26 - man/osfr-package.Rd | 4 tests/testthat.R | 4 tests/testthat/cassettes |only tests/testthat/helper-vcr.R |only tests/testthat/helpers-test-files.R |only tests/testthat/test-directories.R | 67 ++- tests/testthat/test-downloading.R | 19 tests/testthat/test-files.R | 186 +++++---- tests/testthat/test-html-entity-encoding.R | 24 - tests/testthat/test-nodes.R | 54 ++ tests/testthat/test-uploading-multiple-files.R | 138 ++++-- tests/testthat/test-uploading.R | 86 +++- vignettes/getting_started.Rmd | 104 ++--- vignettes/getting_started.Rmd.orig | 38 - 38 files changed, 1256 insertions(+), 709 deletions(-)
Title: A GraphQL Query Parser
Description: Bindings to the 'libgraphqlparser' C++ library. Parses GraphQL syntax
and exports the AST in JSON format.
Author: Jeroen Ooms [cre, aut],
Barret Schloerke [ctb],
Scott Wolchok [ctb],
Facebook, Inc [aut, cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between graphql versions 1.5 dated 2018-12-01 and 1.5.1 dated 2022-09-25
DESCRIPTION | 10 ++++---- MD5 | 10 ++++---- NEWS | 3 ++ src/RcppExports.cpp | 5 ++++ src/libgraphqlparser/lexer.cpp | 46 ++++++++++++++++++++--------------------- src/libgraphqlparser/lexer.lpp | 6 ++--- 6 files changed, 44 insertions(+), 36 deletions(-)
Title: Bibtex Parser
Description: Utility to parse a bibtex file.
Author: Romain Francois [aut, cph] ,
James Joseph Balamuta [ctb, cre]
,
Diego Hernangomez [aut] ,
Scott Chamberlain [ctb] ,
Kurt Hornik [ctb] ,
Brian Ripley [ctb] ,
Michael Koohafkan [ctb],
Mathew W. McLean [ctb]
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between bibtex versions 0.4.2.3 dated 2020-09-19 and 0.5.0 dated 2022-09-25
bibtex-0.4.2.3/bibtex/inst/bibparse.output |only bibtex-0.4.2.3/bibtex/inst/clean-bibtex.R |only bibtex-0.4.2.3/bibtex/inst/grammar |only bibtex-0.4.2.3/bibtex/inst/grammar.output |only bibtex-0.4.2.3/bibtex/inst/include |only bibtex-0.4.2.3/bibtex/inst/objects.output |only bibtex-0.4.2.3/bibtex/src |only bibtex-0.5.0/bibtex/DESCRIPTION | 81 + bibtex-0.5.0/bibtex/MD5 | 76 + bibtex-0.5.0/bibtex/NAMESPACE | 2 bibtex-0.5.0/bibtex/R/bibtex-package.R |only bibtex-0.5.0/bibtex/R/bibtex.R | 563 +++++++------ bibtex-0.5.0/bibtex/R/utils.R |only bibtex-0.5.0/bibtex/R/zzz.R |only bibtex-0.5.0/bibtex/README.md | 38 bibtex-0.5.0/bibtex/inst/bib/issue15.bib |only bibtex-0.5.0/bibtex/inst/bib/issue17.bib |only bibtex-0.5.0/bibtex/inst/bib/issue18.bib |only bibtex-0.5.0/bibtex/inst/bib/issue23.bib |only bibtex-0.5.0/bibtex/inst/bib/issue6.bib |only bibtex-0.5.0/bibtex/inst/bib/issue7.bib |only bibtex-0.5.0/bibtex/inst/bib/issue9.bib |only bibtex-0.5.0/bibtex/inst/bib/multiline_string.bib |only bibtex-0.5.0/bibtex/inst/bib/unable_recover_42.bib |only bibtex-0.5.0/bibtex/inst/bib/unbalanced_braces.bib |only bibtex-0.5.0/bibtex/inst/bib/xampl_message.bib |only bibtex-0.5.0/bibtex/inst/bib/xampl_mod.bib |only bibtex-0.5.0/bibtex/inst/bib/xampl_multiline.bib |only bibtex-0.5.0/bibtex/inst/bib/xampl_preamble.bib |only bibtex-0.5.0/bibtex/inst/bib/xampl_single.bib |only bibtex-0.5.0/bibtex/inst/bib/xampl_standard.bib |only bibtex-0.5.0/bibtex/man/bibtex-package.Rd |only bibtex-0.5.0/bibtex/man/do_read_bib.Rd | 2 bibtex-0.5.0/bibtex/man/read.bib.Rd | 38 bibtex-0.5.0/bibtex/man/write.bib.Rd | 12 bibtex-0.5.0/bibtex/tests/testthat.R | 5 bibtex-0.5.0/bibtex/tests/testthat/_snaps |only bibtex-0.5.0/bibtex/tests/testthat/test-authors.R | 10 bibtex-0.5.0/bibtex/tests/testthat/test-bibtex.R | 64 - bibtex-0.5.0/bibtex/tests/testthat/test-deprecated.R |only bibtex-0.5.0/bibtex/tests/testthat/test-do_read_bib.R |only bibtex-0.5.0/bibtex/tests/testthat/test-examples.R |only bibtex-0.5.0/bibtex/tests/testthat/test-fatal-errors.R |only bibtex-0.5.0/bibtex/tests/testthat/test-full_xampl.R |only bibtex-0.5.0/bibtex/tests/testthat/test-multiline.R |only bibtex-0.5.0/bibtex/tests/testthat/test-preamble.R |only bibtex-0.5.0/bibtex/tests/testthat/test-previous-issues.R |only bibtex-0.5.0/bibtex/tests/testthat/test-read.R |only bibtex-0.5.0/bibtex/tests/testthat/test-standard-entries.R |only bibtex-0.5.0/bibtex/tests/testthat/test-utils.R |only bibtex-0.5.0/bibtex/tests/testthat/test-write.R |only 51 files changed, 557 insertions(+), 334 deletions(-)
Title: TAP-Compliant Unit Testing
Description: Concise TAP <http://testanything.org/> compliant unit testing package. Authored tests can be run using CMD check with minimal implementation overhead.
Author: Jamie Lentin [aut, cre],
Anthony Hennessey [aut]
Maintainer: Jamie Lentin <jm@ravingmantis.com>
Diff between unittest versions 1.5-1 dated 2022-09-07 and 1.5-3 dated 2022-09-25
ChangeLog | 12 ++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- README.md | 2 +- build/vignette.rds |binary tests/test_ut_cmp.R | 7 +++++-- 6 files changed, 27 insertions(+), 12 deletions(-)
Title: Visualization and Tools for Ichimoku Kinko Hyo Strategies
Description: An implementation of 'Ichimoku Kinko Hyo', also commonly known as
'cloud charts'. Static and interactive visualizations with tools for
creating, backtesting and development of quantitative 'ichimoku' strategies.
As described in Sasaki (1996, ISBN:4925152009), the technique is a refinement
on candlestick charting, originating from Japan and now in widespread use in
technical analysis worldwide. Translating as 'one-glance equilibrium chart',
it allows the price action and market structure of financial securities to
be determined 'at-a-glance'. Incorporates an interface with the OANDA
fxTrade API <https://developer.oanda.com/> for retrieving historical and
live streaming price data for major currencies, metals, commodities,
government bonds and stock indices.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between ichimoku versions 1.4.0 dated 2022-09-08 and 1.4.1 dated 2022-09-25
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/archive.R | 2 +- R/ichimoku-package.R | 2 +- R/oanda.R | 9 ++++----- src/shikokuchuo.c | 38 +++++++++++++++++++++++++------------- 7 files changed, 46 insertions(+), 29 deletions(-)
Title: Tools to Accompany the 'psych' Package for Psychological
Research
Description: Support functions, data sets, and vignettes for the 'psych' package. Contains several of the biggest data sets for the 'psych' package as well as one vignette. A few helper functions for file manipulation are included as well. For more information, see the <https://personality-project.org/r/> web page.
Author: William Revelle [aut, cre]
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psychTools versions 2.2.5 dated 2022-05-10 and 2.2.9 dated 2022-09-25
DESCRIPTION | 8 ++++---- MD5 | 38 ++++++++++++++++++++------------------ R/df2latex.R | 42 ++++++++++++++++++++++++++++++++++-------- build/partial.rdb |binary build/vignette.rds |binary data/Athenstaedt.rda |binary data/msqR.rda |binary data/zola.rda |only inst/CITATION | 4 ++-- inst/NEWS.Rd | 16 ++++++++++++++-- inst/doc/factor.pdf |binary inst/doc/mediation.pdf |binary inst/doc/omega.pdf |binary inst/doc/overview.pdf |binary man/Athenstaedt.Rd | 9 +++++++-- man/GERAS.Rd | 5 +++-- man/df2latex.Rd | 21 +++++++++++++++++++-- man/eminence.Rd | 2 +- man/msqR.rd | 3 ++- man/read.clipboard.Rd | 36 ++++++++++++++++++++++++++++++++++++ man/zola.Rd |only 21 files changed, 142 insertions(+), 42 deletions(-)
Title: Letter Value 'Boxplots'
Description: Implements the letter value 'boxplot' which extends the
standard 'boxplot' to deal with both larger and smaller number of data
points by dynamically selecting the appropriate number of letter
values to display.
Author: Hadley Wickham [aut, cre],
Heike Hofmann [aut]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between lvplot versions 0.2.0 dated 2016-05-01 and 0.2.1 dated 2022-09-25
lvplot-0.2.0/lvplot/data/datalist |only lvplot-0.2.1/lvplot/DESCRIPTION | 24 +++--- lvplot-0.2.1/lvplot/MD5 | 31 ++++---- lvplot-0.2.1/lvplot/NAMESPACE | 1 lvplot-0.2.1/lvplot/NEWS.md | 11 +++ lvplot-0.2.1/lvplot/R/data.r | 2 lvplot-0.2.1/lvplot/R/geom-lv.r | 34 ++++----- lvplot-0.2.1/lvplot/R/lvplot-package.R |only lvplot-0.2.1/lvplot/R/stat-lv.r | 1 lvplot-0.2.1/lvplot/README.md | 11 +-- lvplot-0.2.1/lvplot/man/LVboxplot.Rd | 42 +++++++++--- lvplot-0.2.1/lvplot/man/census.Rd | 7 +- lvplot-0.2.1/lvplot/man/determineDepth.Rd | 1 lvplot-0.2.1/lvplot/man/drawLVplot.Rd | 17 ++++ lvplot-0.2.1/lvplot/man/geom_lv.Rd | 105 +++++++++++++++++++----------- lvplot-0.2.1/lvplot/man/lvplot-package.Rd |only lvplot-0.2.1/lvplot/man/lvtable.Rd | 1 lvplot-0.2.1/lvplot/man/ontime.Rd | 9 +- 18 files changed, 185 insertions(+), 112 deletions(-)
Title: Perform HTTP Requests and Process the Responses
Description: Tools for creating and modifying HTTP requests, then
performing them and processing the results. 'httr2' is a modern
re-imagining of 'httr' that uses a pipe-based interface and solves
more of the problems that API wrapping packages face.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between httr2 versions 0.2.1 dated 2022-05-10 and 0.2.2 dated 2022-09-25
DESCRIPTION | 8 +- MD5 | 50 ++++++------- NEWS.md | 21 +++++ R/curl.R | 2 R/oauth-flow-device.R | 2 R/oauth-flow-refresh.R | 10 +- R/oauth-token.R | 5 + R/oauth.R | 2 R/parse.R | 6 + R/req-options.R | 3 R/req-url.R | 5 - R/url.R | 12 ++- README.md | 61 +++++++-------- build/vignette.rds |binary inst/doc/httr2.html | 146 +++++++++++++++++++------------------- man/oauth_flow_refresh.Rd | 4 - man/req_body.Rd | 4 - man/req_oauth_refresh.Rd | 6 - man/req_options.Rd | 1 man/req_url.Rd | 9 +- man/url_parse.Rd | 2 tests/testthat/test-curl.R | 7 + tests/testthat/test-parse.R | 2 tests/testthat/test-req-options.R | 6 + tests/testthat/test-req-url.R | 5 + tests/testthat/test-url.R | 4 + 26 files changed, 223 insertions(+), 160 deletions(-)
Title: 'GLCM' Texture Features
Description: Two 'Gray Level Co-occurrence Matrix' ('GLCM') implementations are included: The first is a fast 'GLCM' feature texture computation based on 'Python' 'Numpy' arrays ('Github' Repository, <https://github.com/tzm030329/GLCM>). The second is a fast 'GLCM' 'RcppArmadillo' implementation which is parallelized (using 'OpenMP') with the option to return all 'GLCM' features at once. For more information, see "Artifact-Free Thin Cloud Removal Using Gans" by Toizumi Takahiro, Zini Simone, Sagi Kazutoshi, Kaneko Eiji, Tsukada Masato, Schettini Raimondo (2019), IEEE International Conference on Image Processing (ICIP), pp. 3596-3600, <doi:10.1109/ICIP.2019.8803652>.
Author: Lampros Mouselimis [aut, cre] ,
Takahiro Toizumi [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between fastGLCM versions 1.0.1 dated 2022-09-04 and 1.0.2 dated 2022-09-25
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 5 +++++ README.md | 2 +- inst/doc/fastGLCM_Functionality.html | 13 ++++++++++--- man/fastglcm.Rd | 18 +++++++++--------- src/fastglcm.cpp | 2 +- 7 files changed, 37 insertions(+), 25 deletions(-)
Title: Import Public Health Ontario's Ontario Marginalization Index
Description: The Ontario Marginalization Index is a socioeconomic model that is built on Statistics Canada census data.
The model consists of four dimensions: Residential Instability, Material Deprivation, Dependency and Ethnic Concentration.
Each of these dimensions are imported for a variety of geographic levels (DA, CD, etc.) for both the 2011 and 2016 administrations of the census (2021 pending).
These data sets contribute to community analysis of equity with respect to Ontario's Anti-Racism Act.
The Ontario Marginalization Index data is retrieved from the Public Health Ontario website: <https://www.publichealthontario.ca/en/data-and-analysis/health-equity/ontario-marginalization-index>.
The shapefile data is retrieved from the Statistics Canada website: <https://www12.statcan.gc.ca/census-recensement/2011/geo/bound-limit/bound-limit-eng.cfm>.
Author: William Conley [aut, cre]
Maintainer: William Conley <william@cconley.ca>
Diff between onmaRg versions 0.1.1 dated 2022-09-18 and 0.1.2 dated 2022-09-25
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/om_geo.R | 2 +- inst/doc/demo.R | 1 - inst/doc/demo.Rmd | 1 - man/om_geo.Rd | 2 +- vignettes/demo.Rmd | 1 - 7 files changed, 11 insertions(+), 14 deletions(-)
Title: Download 'nflverse' Data
Description: A minimal package for downloading data from 'GitHub'
repositories of the 'nflverse' project.
Author: Tan Ho [aut, cre, cph] ,
Sebastian Carl [aut],
John Edwards [ctb],
Ben Baldwin [ctb],
Thomas Mock [ctb],
Lee Sharpe [ctb],
Pranav Rajaram [ctb]
Maintainer: Tan Ho <tan@tanho.ca>
Diff between nflreadr versions 1.3.0 dated 2022-08-06 and 1.3.1 dated 2022-09-25
DESCRIPTION | 12 ++-- MD5 | 89 +++++++++++++++--------------- NAMESPACE | 4 - NEWS.md | 30 +++++++++- R/from_url.R | 52 +---------------- R/load_participation.R | 10 ++- R/load_pbp.R | 2 R/load_pfr_advstats.R | 2 R/load_player_stats.R | 2 R/load_snap_counts.R | 8 +- R/load_teams.R | 4 - R/utils.R | 7 +- R/utils_date.R | 9 +++ R/utils_download_nflverse.R | 26 +++++--- R/utils_gameid.R |only R/utils_name_cleaning.R | 23 ++++--- R/utils_progressively.R |only data/player_name_mapping.rda |binary inst/doc/dictionary_espn_qbr.html | 4 - inst/doc/dictionary_ff_opportunity.html | 4 - inst/doc/dictionary_pbp.html | 4 - inst/doc/dictionary_player_stats.html | 4 - inst/doc/dictionary_rosters.html | 4 - inst/doc/dictionary_schedules.html | 4 - inst/doc/exporting_nflreadr.R | 2 inst/doc/exporting_nflreadr.Rmd | 2 inst/doc/exporting_nflreadr.html | 2 man/clean_player_names.Rd | 2 man/csv_from_url.Rd | 2 man/get_current_week.Rd | 5 + man/latest_season.Rd | 3 + man/load_pbp.Rd | 2 man/load_pfr_passing.Rd | 2 man/load_player_stats.Rd | 2 man/load_snap_counts.Rd | 4 - man/load_teams.Rd | 2 man/nflverse_download.Rd | 5 + man/nflverse_game_id.Rd |only man/nflverse_releases.Rd | 5 + man/progressively.Rd | 18 +++--- man/raw_from_url.Rd | 4 + man/rds_from_url.Rd | 2 tests/testthat/test-from_url.R | 16 +++-- tests/testthat/test-nflverse.R | 42 +++++++++++++- tests/testthat/test-utils_date.R | 4 + tests/testthat/test-utils_name_cleaning.R | 2 vignettes/exporting_nflreadr.Rmd | 2 47 files changed, 254 insertions(+), 180 deletions(-)
Title: Retrieve and Plot Google n-Gram Data
Description: Retrieve and plot word frequencies through time from the "Google
Ngram Viewer" <https://books.google.com/ngrams>.
Author: Sean Carmody [aut, cre, cph]
Maintainer: Sean Carmody <seancarmody@gmail.com>
Diff between ngramr versions 1.8.2 dated 2022-09-20 and 1.8.3 dated 2022-09-25
DESCRIPTION | 6 +- MD5 | 14 ++-- NEWS.md | 6 +- R/ggram.R | 4 + R/ngram.R | 127 +++++++++++++++++++++++++++++++------------ R/ngramw.R | 1 man/ngram.Rd | 7 +- tests/testthat/test-ngramr.R | 1 8 files changed, 119 insertions(+), 47 deletions(-)
Title: Segmentation and Classification of Accelerometer Data
Description: Segmentation and classification procedures for data from the 'Activinsights GENEActiv' <https://activinsights.com/technology/geneactiv/> accelerometer that provides the user with a model to guess behaviour from test data where behaviour is missing.
Includes a step counting algorithm, a function to create segmented data with custom features and a function to use recursive partitioning provided in the function rpart() of the 'rpart' package to create classification models.
Author: Chris Campbell [aut],
Aimee Gott [aut],
Joss Langford [aut],
Charles Sweetland [aut, cre],
Activinsights Ltd [cph]
Maintainer: Charles Sweetland <charles@springhead-data.com>
Diff between GENEAclassify versions 1.5.2 dated 2021-01-05 and 1.5.3 dated 2022-09-25
GENEAclassify-1.5.2/GENEAclassify/inst/vignettes |only GENEAclassify-1.5.3/GENEAclassify/DESCRIPTION | 12 GENEAclassify-1.5.3/GENEAclassify/MD5 | 61 GENEAclassify-1.5.3/GENEAclassify/NAMESPACE | 1 GENEAclassify-1.5.3/GENEAclassify/R/changeTimes.R | 1 GENEAclassify-1.5.3/GENEAclassify/R/classifyGENEA.R | 5 GENEAclassify-1.5.3/GENEAclassify/R/getGENEAsegments.R | 15 GENEAclassify-1.5.3/GENEAclassify/R/segmentation.R | 128 - GENEAclassify-1.5.3/GENEAclassify/R/statistics.R | 39 GENEAclassify-1.5.3/GENEAclassify/R/stepCounter.R | 50 GENEAclassify-1.5.3/GENEAclassify/build/vignette.rds |binary GENEAclassify-1.5.3/GENEAclassify/inst/doc/GENEAclassifyDemo.html | 727 ++++++---- GENEAclassify-1.5.3/GENEAclassify/inst/doc/GENEAclassifyDemo.rmd | 6 GENEAclassify-1.5.3/GENEAclassify/man/CirDisp.Rd | 48 GENEAclassify-1.5.3/GENEAclassify/man/CirKurt.Rd | 48 GENEAclassify-1.5.3/GENEAclassify/man/CirSD.Rd | 48 GENEAclassify-1.5.3/GENEAclassify/man/CirSkew.Rd | 48 GENEAclassify-1.5.3/GENEAclassify/man/CirVar.Rd | 48 GENEAclassify-1.5.3/GENEAclassify/man/GENEAclassify-package.Rd | 32 GENEAclassify-1.5.3/GENEAclassify/man/GENEAcount.Rd | 52 GENEAclassify-1.5.3/GENEAclassify/man/GENEAskew.Rd | 17 GENEAclassify-1.5.3/GENEAclassify/man/MeanDir.Rd | 48 GENEAclassify-1.5.3/GENEAclassify/man/classifyGENEA.Rd | 3 GENEAclassify-1.5.3/GENEAclassify/man/createGENEAmodel.Rd | 3 GENEAclassify-1.5.3/GENEAclassify/man/getGENEAsegments.Rd | 7 GENEAclassify-1.5.3/GENEAclassify/man/impact.Rd | 50 GENEAclassify-1.5.3/GENEAclassify/man/radians.Rd | 56 GENEAclassify-1.5.3/GENEAclassify/man/segmentation.Rd | 7 GENEAclassify-1.5.3/GENEAclassify/man/sod.Rd |only GENEAclassify-1.5.3/GENEAclassify/man/stepCounter.Rd | 6 GENEAclassify-1.5.3/GENEAclassify/man/sumdiff.Rd | 1 GENEAclassify-1.5.3/GENEAclassify/vignettes/GENEAclassifyDemo.rmd | 6 32 files changed, 911 insertions(+), 662 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson <mark.stevenson1@unimelb.edu.au> and Evan Sergeant <evansergeant@gmail.com> with contributions from Telmo Nunes, Cord Heuer, Jonathon Marshall, Javier Sanchez, Ron Thornton, Jeno Reiczigel, Jim Robison-Cox, Paola Sebastiani, Peter Soly [...truncated...]
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.50 dated 2022-07-01 and 2.0.52 dated 2022-09-25
DESCRIPTION | 8 - MD5 | 20 +-- NEWS | 18 ++ R/epi.2by2.R | 2 R/zRRscore.R | 190 ++++++++++++++++------------- build/vignette.rds |binary inst/doc/epiR_descriptive.html | 34 ++--- inst/doc/epiR_measures_of_association.html | 56 ++++---- inst/doc/epiR_sample_size.html | 4 inst/doc/epiR_surveillance.html | 64 ++++----- man/epi.2by2.Rd | 10 + 11 files changed, 230 insertions(+), 176 deletions(-)
Title: Event Detection Using Confidence Bounds
Description: Detects sustained change in digital bio-marker data using
simultaneous confidence bands. Accounts for noise using an auto-regressive
model. Based on Buehlmann (1998) "Sieve bootstrap for smoothing in
nonstationary time series" <doi:10.1214/aos/1030563978>.
Author: Zheng Chen Man [aut, cre]
Maintainer: Zheng Chen Man <zheng.chen.man@alumni.ethz.ch>
Diff between edecob versions 1.1.0 dated 2022-05-27 and 1.2.0 dated 2022-09-25
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/edecob.R | 27 +++++++++++++-------------- man/bt_smoother.Rd | 4 ++-- man/detect_event.Rd | 2 +- man/edecob.Rd | 25 ++++++++++++------------- 6 files changed, 36 insertions(+), 38 deletions(-)
Title: Google's Compact Language Detector 2
Description: Bindings to Google's C++ library Compact Language Detector 2
(see <https://github.com/cld2owners/cld2#readme> for more information). Probabilistically
detects over 80 languages in plain text or HTML. For mixed-language input it returns the
top three detected languages and their approximate proportion of the total classified
text bytes (e.g. 80% English and 20% French out of 1000 bytes). There is also a 'cld3'
package on CRAN which uses a neural network model instead.
Author: Jeroen Ooms [aut, cre] ,
Dirk Sites [cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between cld2 versions 1.2.1 dated 2020-12-15 and 1.2.2 dated 2022-09-25
DESCRIPTION | 7 +++---- MD5 | 8 ++++---- NEWS | 3 +++ src/RcppExports.cpp | 5 +++++ src/libcld2/internal/scoreonescriptspan.h | 12 ++++++------ 5 files changed, 21 insertions(+), 14 deletions(-)
Title: Analyse Biological Time-Series Data
Description: Compiles functions to trim, bin, visualise, and analyse activity/sleep time-series data collected from the Drosophila Activity Monitor (DAM) system (Trikinetics, USA). The following methods were used to compute periodograms - Chi-square periodogram: Sokolove and Bushell (1978) <doi:10.1016/0022-5193(78)90022-X>, Lomb-Scargle periodogram: Lomb (1976) <doi:10.1007/BF00648343>, Scargle (1982) <doi:10.1086/160554> and Ruf (1999) <doi:10.1076/brhm.30.2.178.1422>, and Autocorrelation: Eijzenbach et al. (1986) <doi:10.1111/j.1440-1681.1986.tb00943.x>. Identification of activity peaks is done after using a Savitzky-Golay filter (Savitzky and Golay (1964) <doi:10.1021/ac60214a047>) to smooth raw activity data. Three methods to estimate anticipation of activity are used based on the following papers - Slope method: Fernandez et al. (2020) <doi:10.1016/j.cub.2020.04.025>, Harrisingh method: Harrisingh et al. (2007) <doi:10.1523/JNEUROSCI.3680-07.2007&g [...truncated...]
Author: Lakshman Abhilash [aut, cre]
Maintainer: Lakshman Abhilash <labhilash@gc.cuny.edu>
Diff between phase versions 1.2.1 dated 2021-08-16 and 1.2.2 dated 2022-09-25
DESCRIPTION | 6 - MD5 | 18 +-- NAMESPACE | 2 R/CoM.R | 65 +++-------- R/peakIdentifier.R | 65 +++++++---- R/sleepData.R | 125 ++++++++++++++++------ R/sleepStat.R | 275 ++++++++++++++++++++------------------------------ man/CoM.Rd | 2 man/peakIdentifier.Rd | 6 - man/sleepStat.Rd | 14 +- 10 files changed, 294 insertions(+), 284 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air pollution data. Data are typically regular time series and air quality measurement, meteorological data and dispersion model output can be analysed. The package is described in Carslaw and Ropkins (2012, <doi:10.1016/j.envsoft.2011.09.008>) and subsequent papers.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 2.10-0 dated 2022-06-21 and 2.11 dated 2022-09-25
DESCRIPTION | 16 +--- MD5 | 50 +++++++------- R/importAURNCsv.R | 29 +------- R/importTraj.R | 6 - R/importUKAQ.R | 23 ++++-- R/polarPlot.R | 3 R/quickText.R | 6 - R/summaryPlot.R | 14 +++- R/timeAverage.R | 6 - R/timePlot.R | 1 R/timeProp.R | 154 ++++++++++++-------------------------------- R/timeVariation.R | 24 +++++- R/trajCluster.R | 14 ++-- R/trajLevel.R | 44 ++++++++---- R/windRose.R | 12 ++- README.md | 86 ++++++++++++------------ man/importAURN.Rd | 10 +- man/importAURNCsv.Rd | 27 +------ man/importTraj.Rd | 6 - man/timeProp.Rd | 11 --- man/timeVariation.Rd | 5 + man/trajCluster.Rd | 2 man/trajLevel.Rd | 7 ++ man/windRose.Rd | 8 ++ tools/unnamed-chunk-6-1.png |binary tools/unnamed-chunk-7-1.png |binary 26 files changed, 260 insertions(+), 304 deletions(-)
Title: Easy Data Wrangling and Statistical Transformations
Description: A lightweight package to easily manipulate, clean, transform,
and prepare your data for analysis. It also forms the data wrangling
backend for the packages in the 'easystats' ecosystem.
Author: Indrajeet Patil [aut, cre] ,
Dominique Makowski [aut] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Brenton M. Wiernik [aut] ,
Etienne Bacher [aut] ,
Remi Theriault [ctb]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between datawizard versions 0.6.0 dated 2022-09-15 and 0.6.1 dated 2022-09-25
datawizard-0.6.0/datawizard/R/backports.R |only datawizard-0.6.1/datawizard/DESCRIPTION | 10 - datawizard-0.6.1/datawizard/MD5 | 87 ++++++------- datawizard-0.6.1/datawizard/NAMESPACE | 2 datawizard-0.6.1/datawizard/NEWS.md | 4 datawizard-0.6.1/datawizard/R/adjust.R | 4 datawizard-0.6.1/datawizard/R/categorize.R | 20 +- datawizard-0.6.1/datawizard/R/center.R | 4 datawizard-0.6.1/datawizard/R/convert_na_to.R | 16 +- datawizard-0.6.1/datawizard/R/convert_to_na.R | 20 +- datawizard-0.6.1/datawizard/R/data_arrange.R | 4 datawizard-0.6.1/datawizard/R/data_find.R | 4 datawizard-0.6.1/datawizard/R/data_match.R | 16 +- datawizard-0.6.1/datawizard/R/data_merge.R | 30 +--- datawizard-0.6.1/datawizard/R/data_partition.R | 17 +- datawizard-0.6.1/datawizard/R/data_rename.R | 8 - datawizard-0.6.1/datawizard/R/data_rescale.R | 8 - datawizard-0.6.1/datawizard/R/data_reshape.R | 24 +-- datawizard-0.6.1/datawizard/R/data_reverse.R | 4 datawizard-0.6.1/datawizard/R/data_rotate.R | 2 datawizard-0.6.1/datawizard/R/data_select.R | 2 datawizard-0.6.1/datawizard/R/demean.R | 12 - datawizard-0.6.1/datawizard/R/describe_distribution.R | 5 datawizard-0.6.1/datawizard/R/descriptives.R | 30 ++-- datawizard-0.6.1/datawizard/R/normalize.R | 8 - datawizard-0.6.1/datawizard/R/recode_values.R | 8 - datawizard-0.6.1/datawizard/R/rescale_weights.R | 13 - datawizard-0.6.1/datawizard/R/select_helpers.R | 24 +-- datawizard-0.6.1/datawizard/R/skewness_kurtosis.R | 21 --- datawizard-0.6.1/datawizard/R/slide.R | 4 datawizard-0.6.1/datawizard/R/standardize.R | 2 datawizard-0.6.1/datawizard/R/standardize.models.R | 73 +++------- datawizard-0.6.1/datawizard/R/to_factor.R | 4 datawizard-0.6.1/datawizard/R/to_numeric.R | 23 ++- datawizard-0.6.1/datawizard/R/unnormalize.R | 2 datawizard-0.6.1/datawizard/R/utils.R | 4 datawizard-0.6.1/datawizard/R/utils_data.R | 30 +--- datawizard-0.6.1/datawizard/R/utils_standardize_center.R | 28 ++-- datawizard-0.6.1/datawizard/R/winsorize.R | 23 +-- datawizard-0.6.1/datawizard/README.md | 7 + datawizard-0.6.1/datawizard/inst/doc/selection_syntax.R | 2 datawizard-0.6.1/datawizard/inst/doc/selection_syntax.Rmd | 2 datawizard-0.6.1/datawizard/inst/doc/selection_syntax.html | 2 datawizard-0.6.1/datawizard/tests/testthat.R | 7 + datawizard-0.6.1/datawizard/vignettes/selection_syntax.Rmd | 2 45 files changed, 294 insertions(+), 328 deletions(-)
Title: Meta-Analysis of Diagnosis and Prognosis Research Studies
Description: Facilitate frequentist and Bayesian meta-analysis of diagnosis and prognosis research studies. It includes functions to summarize multiple estimates of prediction model discrimination and calibration performance (Debray et al., 2019) <doi:10.1177/0962280218785504>. It also includes functions to evaluate funnel plot asymmetry (Debray et al., 2018) <doi:10.1002/jrsm.1266>. Finally, the package provides functions for developing multivariable prediction models from datasets with clustering (de Jong et al., 2021) <doi:10.1002/sim.8981>.
Author: Thomas Debray [aut, cre] ,
Valentijn de Jong [aut]
Maintainer: Thomas Debray <thomas.debray@gmail.com>
Diff between metamisc versions 0.2.5 dated 2021-09-20 and 0.4.0 dated 2022-09-25
DESCRIPTION | 18 +-- MD5 | 69 +++++++-------- NEWS.md |only R/basics.r | 8 - R/bugs_utils.r | 36 +++++-- R/ccalc.r | 5 - R/fat.r | 70 +++++++-------- R/metapred.R | 4 R/metapred_recal.R | 12 +- R/metapred_utils.R | 17 +++ R/oecalc.R | 2 R/uvmeta.r | 36 ++++--- R/valmeta.r | 151 ++++++++++++++++++++------------- README.md |only build |only data/Collins.rda |binary data/DVTipd.rda |binary data/DVTmodels.rda |binary data/Daniels.rda |binary data/EuroSCORE.rda |binary data/Fibrinogen.rda |binary data/Framingham.rda |binary data/Kertai.rda |binary data/Roberts.rda |binary data/Scheidler.rda |binary data/Zhang.rda |binary data/impact.rda |binary man/ccalc.Rd | 3 man/fat.Rd | 70 +++++++-------- man/metamisc-package.Rd | 4 man/uvmeta.Rd | 35 ++++--- man/valmeta.Rd | 151 ++++++++++++++++++++------------- tests/testthat/Rplots.pdf |binary tests/testthat/test_formula.R | 31 +++--- tests/testthat/test_metapred_1_utils.R | 20 ++++ tests/testthat/test_metapred_2_fit.R | 53 ++++++++++- tests/testthat/test_valmeta_6_plots.R | 19 ++-- 37 files changed, 504 insertions(+), 310 deletions(-)
Title: World Development Indicators and Other World Bank Data
Description: Search and download data from over 40 databases hosted by the World Bank, including the World Development Indicators ('WDI'), International Debt Statistics, Doing Business, Human Capital Index, and Sub-national Poverty indicators.
Author: Vincent Arel-Bundock [aut, cre]
,
Etienne Bacher [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between WDI versions 2.7.7 dated 2022-07-16 and 2.7.8 dated 2022-09-25
DESCRIPTION | 12 +-- MD5 | 16 ++-- NAMESPACE | 1 NEWS.md | 5 + R/WDI.R | 149 +++++++++++++++++++++++---------------------- data/WDI_data.RData |binary man/WDI.Rd | 4 - man/wdi.query.Rd | 4 - tests/testthat/test-main.R | 25 +++---- 9 files changed, 112 insertions(+), 104 deletions(-)
Title: Import Data from Our World in Data
Description: Search and download the data used in over 3,000 Our World in Data charts.
Author: Piers York
Maintainer: Piers York <piersyork@gmail.com>
Diff between owidR versions 1.3.1 dated 2022-08-07 and 1.4.0 dated 2022-09-25
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Title: Marginal Effects, Marginal Means, Predictions, and Contrasts
Description: Compute and plot adjusted predictions, contrasts, marginal effects, and marginal means for over 65 classes of statistical models in R. Conduct linear and non-linear hypothesis tests using the delta method.
Author: Vincent Arel-Bundock [aut, cre, cph]
,
Marcio Augusto Diniz [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between marginaleffects versions 0.7.0 dated 2022-08-06 and 0.7.1 dated 2022-09-25
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marginaleffects-0.7.1/marginaleffects/R/get_contrast_data_character.R | 6 marginaleffects-0.7.1/marginaleffects/R/get_contrast_data_numeric.R | 21 marginaleffects-0.7.1/marginaleffects/R/get_contrasts.R | 312 ++++----- marginaleffects-0.7.1/marginaleffects/R/get_hypothesis.R | 235 +++++- marginaleffects-0.7.1/marginaleffects/R/get_se_delta.R | 8 marginaleffects-0.7.1/marginaleffects/R/get_vcov.R | 4 marginaleffects-0.7.1/marginaleffects/R/glance.R | 6 marginaleffects-0.7.1/marginaleffects/R/marginaleffects.R | 27 marginaleffects-0.7.1/marginaleffects/R/marginalmeans.R | 171 ++++ marginaleffects-0.7.1/marginaleffects/R/methods_MASS.R | 4 marginaleffects-0.7.1/marginaleffects/R/methods_aod.R | 2 marginaleffects-0.7.1/marginaleffects/R/methods_betareg.R | 2 marginaleffects-0.7.1/marginaleffects/R/methods_brms.R | 6 marginaleffects-0.7.1/marginaleffects/R/methods_crch.R | 4 marginaleffects-0.7.1/marginaleffects/R/methods_fixest.R | 53 + 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More information about marginaleffects at CRAN
Permanent link
Title: Handling an Inconsistently Coded Categorical Variable in a Panel
Dataset
Description: Unifying of an inconsistently coded categorical variable between two different time points in accordance with a mapping table.
The main rule is to replicate the observation if it could be assign to a few categories.
Then using simple frequencies or statistical methods to approximate probabilities of being assign to each of them.
This procedure was invented and implemented in the paper by (Nasinski, Majchrowska and Broniatowska (2020) <doi:10.24425/cejeme.2020.134747>).
Author: Maciej Nasinski [aut, cre]
Maintainer: Maciej Nasinski <nasinski.maciej@gmail.com>
Diff between cat2cat versions 0.4.4 dated 2022-08-31 and 0.4.5 dated 2022-09-25
DESCRIPTION | 6 MD5 | 74 +++--- NEWS.md | 7 R/cat2cat.R | 269 +++++++++++++++++++------ R/cat2cat_agg.R | 28 +- R/cat2cat_utils.R | 130 ++++++++---- R/data.R | 60 ++++- R/lms.R | 30 +- R/mapping.R | 67 ++++-- R/plot_cat2cat.R | 46 +++- R/read_eq.R | 2 inst/doc/cat2cat.R | 104 ++++++--- inst/doc/cat2cat.Rmd | 104 ++++++--- inst/doc/cat2cat.html | 386 +++++++++++++++++++----------------- man/cat2cat.Rd | 105 ++++++--- man/cat2cat_agg.Rd | 13 - man/cat2cat_ml.Rd | 3 man/cat_apply_freq.Rd | 26 +- man/cross_c2c.Rd | 32 +- man/dummy_c2c.Rd | 14 - man/get_freqs.Rd | 22 +- man/get_mappings.Rd | 17 - man/occup.Rd | 21 + man/occup_small.Rd | 23 +- man/plot_c2c.Rd | 12 - man/prune_c2c.Rd | 42 ++- man/resolve_frequencies.Rd | 6 man/summary_c2c.Rd | 30 +- man/trans.Rd | 9 man/validate_cover_cats.Rd | 3 man/verticals2.Rd | 10 tests/testthat.R | 6 tests/testthat/Rplots.pdf |binary tests/testthat/test-cat2cat.R | 148 ++++++++++--- tests/testthat/test-multi-cat2cat.R | 85 ++++++- tests/testthat/test-plot.R | 6 tests/testthat/test-utils.R | 46 +++- vignettes/cat2cat.Rmd | 104 ++++++--- 38 files changed, 1422 insertions(+), 674 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-26 2.2
2015-09-04 2.1
2015-01-13 2.0
2014-10-23 1.1
2014-10-17 1.0
Title: Data from all Seasons of Survivor (US) TV Series in Tidy Format
Description: Several datasets which detail the results and events of each season of Survivor. This includes
details on the cast, voting history, immunity and reward challenges, jury votes and viewers. This data is
useful for practicing data wrangling, graph analytics and analysing how each season of Survivor played out.
Includes 'ggplot2' scales and colour palettes for visualisation.
Author: Daniel Oehm [aut, cre],
Carly Levitz [ctb],
Dario Mavec [ctb]
Maintainer: Daniel Oehm <danieloehm@gmail.com>
Diff between survivoR versions 2.0 dated 2022-09-21 and 2.0.1 dated 2022-09-25
DESCRIPTION | 10 +++++----- MD5 | 41 ++++++++++++++++++++++------------------- NAMESPACE | 4 ++++ NEWS.md | 13 +++++++++++++ R/helpers.R |only README.md | 10 +++++----- data/advantage_details.rda |binary data/advantage_movement.rda |binary data/boot_mapping.rda |binary data/castaway_details.rda |binary data/castaways.rda |binary data/challenge_results.rda |binary data/confessionals.rda |binary data/jury_votes.rda |binary data/season_palettes.rda |binary data/season_summary.rda |binary data/survivor_auction.rda |binary data/tribe_colours.rda |binary data/tribe_mapping.rda |binary data/viewers.rda |binary data/vote_history.rda |binary man/get_castaway_image.Rd |only man/show_palette.Rd |only 23 files changed, 49 insertions(+), 29 deletions(-)
Title: Open Population Capture-Recapture
Description: Non-spatial and spatial open-population capture-recapture analysis.
Author: Murray Efford [aut, cre]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between openCR versions 2.2.4 dated 2022-07-01 and 2.2.5 dated 2022-09-25
DESCRIPTION | 13 - MD5 | 40 ++-- NAMESPACE | 2 NEWS | 8 R/derived.openCR.r | 5 R/modelAverage.R | 352 +++++++++++++++++++++--------------------- R/ucare.R |only R/utility.R | 5 inst/doc/openCR-vignette.R | 4 inst/doc/openCR-vignette.Rmd | 26 +-- inst/doc/openCR-vignette.pdf |binary man/cumMove.Rd | 10 + man/expected.d.Rd | 8 man/kernel.Rd | 4 man/microtus.Rd | 2 man/movementmodels.Rd | 4 man/openCR-defunct.Rd | 7 man/openCR-package.Rd | 10 - man/pkernel.Rd | 8 man/ucare.Rd |only src/utils.cpp | 2 vignettes/openCR-vignette.Rmd | 26 +-- 22 files changed, 294 insertions(+), 242 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-30 0.9.9
2015-03-24 0.9.7
2015-03-19 0.9.6