Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-04 0.1.1
2015-08-03 0.1.0
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Title: Bootstrapping the ARDL Tests for Cointegration
Description: The bootstrap ARDL tests for cointegration is the main functionality of this package. It also acts as a wrapper of the most commond ARDL testing procedures for cointegration: the bound tests of Pesaran, Shin and Smith (PSS; 2001 - <doi:10.1002/jae.616>) and the asymptotic test on the independent variables of Sam, McNown and Goh (SMG: 2019 - <doi:10.1016/j.econmod.2018.11.001>). Bootstrap and bound tests are performed under both the conditional and unconditional ARDL models.
Author: Gianmarco Vacca, Stefano Bertelli
Maintainer: Gianmarco Vacca <gianmarco.vacca@unicatt.it>
Diff between bootCT versions 1.1 dated 2022-07-18 and 1.1.1 dated 2022-09-27
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- R/boot_ardl.R | 5 +++++ R/sim_vecm_ardl.R | 5 ++--- R/sysdata.rda |binary man/sim_vecm_ardl.Rd | 2 +- 6 files changed, 20 insertions(+), 16 deletions(-)
Title: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] ,
RStudio, PBC [cph],
Christophe Dervieux [ctb] ,
Devon Ryan [ctb] ,
Ethan Heinzen [ctb],
Fernando Cagua [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.41 dated 2022-08-16 and 0.42 dated 2022-09-27
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/install.R | 22 +++++++++++++++------- 3 files changed, 20 insertions(+), 12 deletions(-)
Title: DBI Connector to Presto
Description: Implements a 'DBI' compliant interface to Presto. Presto is
an open source distributed SQL query engine for running interactive
analytic queries against data sources of all sizes ranging from
gigabytes to petabytes: <https://prestodb.io/>.
Author: Onur Ismail Filiz [aut],
Sergey Goder [aut],
Jarod G.R. Meng [aut, cre],
Thomas J. Leeper [ctb],
John Myles White [ctb]
Maintainer: Jarod G.R. Meng <jarodm@fb.com>
Diff between RPresto versions 1.3.7 dated 2021-09-04 and 1.4.0 dated 2022-09-27
RPresto-1.3.7/RPresto/R/PrestoCursor.R |only RPresto-1.3.7/RPresto/R/RcppExports.R |only RPresto-1.3.7/RPresto/R/copy.to.src.presto.R |only RPresto-1.3.7/RPresto/R/db.data.type.PrestoConnection.R |only RPresto-1.3.7/RPresto/R/db.explain.PrestoConnection.R |only RPresto-1.3.7/RPresto/R/db.query.rows.PrestoConnection.R |only RPresto-1.3.7/RPresto/R/db_desc.PrestoConnection.R |only RPresto-1.3.7/RPresto/R/db_query_fields.R |only RPresto-1.3.7/RPresto/R/dbplyr_compatible.R |only RPresto-1.3.7/RPresto/R/description_from_info.R |only RPresto-1.3.7/RPresto/R/extract.data.R |only RPresto-1.3.7/RPresto/R/help.R |only RPresto-1.3.7/RPresto/R/json.tabular.to.data.frame.R |only RPresto-1.3.7/RPresto/R/parse.response.R |only RPresto-1.3.7/RPresto/R/sql_escape_date.R |only RPresto-1.3.7/RPresto/R/sql_escape_datetime.R |only RPresto-1.3.7/RPresto/R/sql_translate_env.R |only RPresto-1.3.7/RPresto/R/src.presto.R |only RPresto-1.3.7/RPresto/R/tbl.src.presto.R |only RPresto-1.3.7/RPresto/R/utility_functions.R |only RPresto-1.3.7/RPresto/man/PrestoCursor-class.Rd |only RPresto-1.3.7/RPresto/man/RPresto.Rd |only RPresto-1.3.7/RPresto/man/json.tabular.to.data.frame.Rd |only RPresto-1.3.7/RPresto/src |only RPresto-1.3.7/RPresto/tests/testthat/test-PrestoCursor.R |only RPresto-1.3.7/RPresto/tests/testthat/test-extract.data.R |only RPresto-1.3.7/RPresto/tests/testthat/test-json_tabular_to_data_frame.R |only RPresto-1.4.0/RPresto/DESCRIPTION | 67 - RPresto-1.4.0/RPresto/LICENSE | 4 RPresto-1.4.0/RPresto/MD5 | 237 ++-- RPresto-1.4.0/RPresto/NAMESPACE | 161 +-- RPresto-1.4.0/RPresto/NEWS.md | 55 + RPresto-1.4.0/RPresto/R/Presto.R | 6 RPresto-1.4.0/RPresto/R/PrestoConnection.R | 71 - RPresto-1.4.0/RPresto/R/PrestoDriver.R | 20 RPresto-1.4.0/RPresto/R/PrestoQuery.R |only RPresto-1.4.0/RPresto/R/PrestoResult.R | 64 - RPresto-1.4.0/RPresto/R/PrestoSession.R | 120 +- RPresto-1.4.0/RPresto/R/RPresto-package.R |only RPresto-1.4.0/RPresto/R/create.dummy.tables.R |only RPresto-1.4.0/RPresto/R/cte.R |only RPresto-1.4.0/RPresto/R/dbClearResult.R | 24 RPresto-1.4.0/RPresto/R/dbConnect.R | 141 ++ RPresto-1.4.0/RPresto/R/dbCreateTable.R |only RPresto-1.4.0/RPresto/R/dbCreateTableAs.R |only RPresto-1.4.0/RPresto/R/dbDataType.R | 165 +-- RPresto-1.4.0/RPresto/R/dbDisconnect.R | 12 RPresto-1.4.0/RPresto/R/dbExistsTable.R | 27 RPresto-1.4.0/RPresto/R/dbFetch.R | 168 +-- RPresto-1.4.0/RPresto/R/dbGetInfo.R | 79 - RPresto-1.4.0/RPresto/R/dbGetQuery.R | 53 - RPresto-1.4.0/RPresto/R/dbGetRowCount.R | 7 RPresto-1.4.0/RPresto/R/dbGetRowsAffected.R |only RPresto-1.4.0/RPresto/R/dbGetStatement.R | 5 RPresto-1.4.0/RPresto/R/dbHasCompleted.R | 7 RPresto-1.4.0/RPresto/R/dbIsValid.R | 7 RPresto-1.4.0/RPresto/R/dbListFields.R | 25 RPresto-1.4.0/RPresto/R/dbListTables.R | 21 RPresto-1.4.0/RPresto/R/dbReadTable.R |only RPresto-1.4.0/RPresto/R/dbRemoveTable.R |only RPresto-1.4.0/RPresto/R/dbSendQuery.R | 56 - RPresto-1.4.0/RPresto/R/dbUnloadDriver.R | 8 RPresto-1.4.0/RPresto/R/dbWriteTable.R |only RPresto-1.4.0/RPresto/R/dbplyr-db.R |only RPresto-1.4.0/RPresto/R/dbplyr-sql.R |only RPresto-1.4.0/RPresto/R/dbplyr-src.R |only RPresto-1.4.0/RPresto/R/default.R |only RPresto-1.4.0/RPresto/R/fetch.R | 16 RPresto-1.4.0/RPresto/R/presto.field.R |only RPresto-1.4.0/RPresto/R/presto.field_utilities.R |only RPresto-1.4.0/RPresto/R/request_headers.R | 36 RPresto-1.4.0/RPresto/R/sqlCreateTable.R |only RPresto-1.4.0/RPresto/R/sqlCreateTableAs.R |only RPresto-1.4.0/RPresto/R/zzz.R |only RPresto-1.4.0/RPresto/README.md | 412 ++++++- RPresto-1.4.0/RPresto/build |only RPresto-1.4.0/RPresto/inst |only RPresto-1.4.0/RPresto/man/Presto.Rd | 65 - RPresto-1.4.0/RPresto/man/PrestoConnection-class.Rd | 133 ++ RPresto-1.4.0/RPresto/man/PrestoQuery-class.Rd |only RPresto-1.4.0/RPresto/man/PrestoResult-class.Rd | 28 RPresto-1.4.0/RPresto/man/PrestoSession-class.Rd | 27 RPresto-1.4.0/RPresto/man/RPresto-package.Rd |only RPresto-1.4.0/RPresto/man/dbCreateTableAs.Rd |only RPresto-1.4.0/RPresto/man/dbDataType.Rd | 10 RPresto-1.4.0/RPresto/man/dbGetInfo.Rd | 58 - RPresto-1.4.0/RPresto/man/dbplyr-db.Rd |only RPresto-1.4.0/RPresto/man/dbplyr-sql.Rd |only RPresto-1.4.0/RPresto/man/dbplyr_edition.PrestoConnection.Rd |only RPresto-1.4.0/RPresto/man/dbplyr_function_implementations.Rd |only RPresto-1.4.0/RPresto/man/dplyr_function_implementations.Rd | 61 - RPresto-1.4.0/RPresto/man/dplyr_source_function_implementations.Rd |only RPresto-1.4.0/RPresto/man/dummy_tables.Rd |only RPresto-1.4.0/RPresto/man/figures |only RPresto-1.4.0/RPresto/man/presto_has_default.Rd |only RPresto-1.4.0/RPresto/man/sqlCreateTableAs.Rd |only RPresto-1.4.0/RPresto/man/src_presto.Rd | 54 - RPresto-1.4.0/RPresto/tests/testthat.R | 2 RPresto-1.4.0/RPresto/tests/testthat/credentials.dcf |only RPresto-1.4.0/RPresto/tests/testthat/test-PrestoQuery.R |only RPresto-1.4.0/RPresto/tests/testthat/test-bigint_handling.R | 69 + RPresto-1.4.0/RPresto/tests/testthat/test-check.status.code.R | 48 RPresto-1.4.0/RPresto/tests/testthat/test-copy_to.src_presto.R |only RPresto-1.4.0/RPresto/tests/testthat/test-cte.R |only RPresto-1.4.0/RPresto/tests/testthat/test-data_types.R | 246 ++-- RPresto-1.4.0/RPresto/tests/testthat/test-dbClearResult.R | 76 - RPresto-1.4.0/RPresto/tests/testthat/test-dbConnect.R | 185 ++- RPresto-1.4.0/RPresto/tests/testthat/test-dbCreateTable.R |only RPresto-1.4.0/RPresto/tests/testthat/test-dbCreateTableAs.R |only RPresto-1.4.0/RPresto/tests/testthat/test-dbDataType.R | 152 +- RPresto-1.4.0/RPresto/tests/testthat/test-dbDisconnect.R | 10 RPresto-1.4.0/RPresto/tests/testthat/test-dbExecute.R |only RPresto-1.4.0/RPresto/tests/testthat/test-dbExistsTable.R | 54 - RPresto-1.4.0/RPresto/tests/testthat/test-dbFetch.R | 516 +++++----- RPresto-1.4.0/RPresto/tests/testthat/test-dbGetInfo.R | 108 +- RPresto-1.4.0/RPresto/tests/testthat/test-dbGetQuery.R | 201 +-- RPresto-1.4.0/RPresto/tests/testthat/test-dbGetRowCount.R | 58 - RPresto-1.4.0/RPresto/tests/testthat/test-dbGetStatement.R | 62 - RPresto-1.4.0/RPresto/tests/testthat/test-dbHasCompleted.R | 55 - RPresto-1.4.0/RPresto/tests/testthat/test-dbIsValid.R | 232 ++-- RPresto-1.4.0/RPresto/tests/testthat/test-dbListFields.R | 458 ++++---- RPresto-1.4.0/RPresto/tests/testthat/test-dbListTables.R | 55 - RPresto-1.4.0/RPresto/tests/testthat/test-dbReadTable.R |only RPresto-1.4.0/RPresto/tests/testthat/test-dbRemoveTable.R |only RPresto-1.4.0/RPresto/tests/testthat/test-dbSendQuery.R | 240 ++-- RPresto-1.4.0/RPresto/tests/testthat/test-dbUnloadDriver.R | 6 RPresto-1.4.0/RPresto/tests/testthat/test-dbWriteTable.R |only RPresto-1.4.0/RPresto/tests/testthat/test-db_explain.R | 46 RPresto-1.4.0/RPresto/tests/testthat/test-db_query_fields.R | 251 ++-- RPresto-1.4.0/RPresto/tests/testthat/test-dbplyr-sql.R |only RPresto-1.4.0/RPresto/tests/testthat/test-dplyr.integration.R | 88 - RPresto-1.4.0/RPresto/tests/testthat/test-dplyr_as_type.R | 104 -- RPresto-1.4.0/RPresto/tests/testthat/test-extra.credential.R |only RPresto-1.4.0/RPresto/tests/testthat/test-fetch.R | 148 -- RPresto-1.4.0/RPresto/tests/testthat/test-get.state.R | 33 RPresto-1.4.0/RPresto/tests/testthat/test-integration.R | 40 RPresto-1.4.0/RPresto/tests/testthat/test-presto_field.R |only RPresto-1.4.0/RPresto/tests/testthat/test-response.to.content.R | 90 - RPresto-1.4.0/RPresto/tests/testthat/test-session.property.R | 32 RPresto-1.4.0/RPresto/tests/testthat/test-session.timezone.R | 57 - RPresto-1.4.0/RPresto/tests/testthat/test-sql_escape_date.R | 22 RPresto-1.4.0/RPresto/tests/testthat/test-sql_escape_datetime.R | 27 RPresto-1.4.0/RPresto/tests/testthat/test-stop.with.error.message.R | 28 RPresto-1.4.0/RPresto/tests/testthat/test-tbl.src_presto.R | 50 RPresto-1.4.0/RPresto/tests/testthat/test-translate_sql.R | 260 ++--- RPresto-1.4.0/RPresto/tests/testthat/utilities.R | 510 ++++++--- RPresto-1.4.0/RPresto/vignettes |only 147 files changed, 4072 insertions(+), 3057 deletions(-)
Title: Statistical Inference for Box-Cox Based Receiver Operating
Characteristic Curves
Description: Generation of Box-Cox based ROC curves and several aspects of inferences and hypothesis testing. Can be used when inferences for one biomarker (Bantis LE, Nakas CT, Reiser B. (2018) <doi:10.1002/bimj.201700107>) are of interest or when comparisons of two correlated biomarkers (Bantis LE, Nakas CT, Reiser B. (2021) <doi:10.1002/bimj.202000128>) are of interest. Provides inferences and comparisons around the AUC, the Youden index, the sensitivity at a given specificity level (and vice versa), the optimal operating point of the ROC curve (in the Youden sense), and the Youden based cutoff.
Author: Leonidas Bantis [aut],
Benjamin Brewer [cre, ctb],
Christos Nakas [ctb],
Benjamin Reiser [ctb]
Maintainer: Benjamin Brewer <tennisbenj@gmail.com>
Diff between rocbc versions 0.1.0 dated 2022-09-20 and 0.1.1 dated 2022-09-27
DESCRIPTION | 18 ++++++++++----- MD5 | 10 ++++---- inst/doc/documentation_rocbc.R | 1 inst/doc/documentation_rocbc.Rmd | 43 ++++++++++++++------------------------ inst/doc/documentation_rocbc.html | 43 +++++++++++++++----------------------- vignettes/documentation_rocbc.Rmd | 43 ++++++++++++++------------------------ 6 files changed, 68 insertions(+), 90 deletions(-)
Title: Tools for Multimodal Network Analysis
Description: A set of tools for analysing multimodal networks.
All functions operate with matrices, edge lists,
and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode, two-mode (bipartite), and sometimes three-mode networks.
It includes functions for measuring
centrality, centralization, cohesion, closure, and constraint,
as well as for network block-modelling and regression.
The package is released as a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book in addition to other network data.
Author: James Hollway [cre, aut, ctb] ,
Jael Tan [ctb] ,
Bernhard Bieri [ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 0.11.3 dated 2022-09-13 and 0.12.0 dated 2022-09-27
migraph-0.11.3/migraph/inst/doc/p1data.R |only migraph-0.11.3/migraph/man/figures/isonnetworkers.pdf |only migraph-0.11.3/migraph/man/figures/isonnetworkers.png |only migraph-0.11.3/migraph/man/graph_census.Rd |only migraph-0.12.0/migraph/DESCRIPTION | 8 migraph-0.12.0/migraph/MD5 | 213 - migraph-0.12.0/migraph/NAMESPACE | 34 migraph-0.12.0/migraph/NEWS.md | 1161 ++++------ migraph-0.12.0/migraph/R/class_measures.R | 8 migraph-0.12.0/migraph/R/class_motifs.R | 8 migraph-0.12.0/migraph/R/data_ison.R | 1 migraph-0.12.0/migraph/R/make_create.R | 4 migraph-0.12.0/migraph/R/make_generate.R | 14 migraph-0.12.0/migraph/R/manip_add.R | 14 migraph-0.12.0/migraph/R/manip_as.R | 4 migraph-0.12.0/migraph/R/manip_grab.R | 30 migraph-0.12.0/migraph/R/manip_to.R | 10 migraph-0.12.0/migraph/R/mark_is.R | 8 migraph-0.12.0/migraph/R/mark_nodes.R | 2 migraph-0.12.0/migraph/R/mark_ties.R | 2 migraph-0.12.0/migraph/R/measure_centrality.R | 28 migraph-0.12.0/migraph/R/measure_closure.R | 28 migraph-0.12.0/migraph/R/measure_cohesion.R | 44 migraph-0.12.0/migraph/R/measure_diversity.R | 28 migraph-0.12.0/migraph/R/measure_features.R | 54 migraph-0.12.0/migraph/R/member_community.R | 2 migraph-0.12.0/migraph/R/member_core.R | 8 migraph-0.12.0/migraph/R/member_equivalence.R | 8 migraph-0.12.0/migraph/R/migraph-defunct.R | 306 ++ migraph-0.12.0/migraph/R/model_cluster.R | 2 migraph-0.12.0/migraph/R/model_regression.R | 2 migraph-0.12.0/migraph/R/model_tests.R | 20 migraph-0.12.0/migraph/R/motif_census.R | 28 migraph-0.12.0/migraph/R/viz_autographr.R | 2 migraph-0.12.0/migraph/R/viz_gglineage.R | 2 migraph-0.12.0/migraph/R/viz_layout_partition.R | 5 migraph-0.12.0/migraph/README.md | 43 migraph-0.12.0/migraph/build/vignette.rds |binary migraph-0.12.0/migraph/inst/doc/p1data.Rmd | 374 +-- migraph-0.12.0/migraph/inst/doc/p1data.html | 560 ++-- migraph-0.12.0/migraph/inst/doc/p2visualisation.R |only migraph-0.12.0/migraph/inst/doc/p2visualisation.Rmd |only migraph-0.12.0/migraph/inst/doc/p2visualisation.html |only migraph-0.12.0/migraph/inst/doc/p3centrality.R | 32 migraph-0.12.0/migraph/inst/doc/p3centrality.Rmd | 110 migraph-0.12.0/migraph/inst/doc/p3centrality.html | 137 - migraph-0.12.0/migraph/inst/doc/p5equivalence.R | 28 migraph-0.12.0/migraph/inst/doc/p5equivalence.Rmd | 96 migraph-0.12.0/migraph/inst/doc/p5equivalence.html | 147 - migraph-0.12.0/migraph/inst/doc/p7linearmodel.R | 56 migraph-0.12.0/migraph/inst/doc/p7linearmodel.Rmd | 118 - migraph-0.12.0/migraph/inst/doc/p7linearmodel.html | 166 - migraph-0.12.0/migraph/man/centralisation.Rd | 38 migraph-0.12.0/migraph/man/closure.Rd | 36 migraph-0.12.0/migraph/man/cohesion.Rd | 56 migraph-0.12.0/migraph/man/core-periphery.Rd | 2 migraph-0.12.0/migraph/man/defunct.Rd | 170 + migraph-0.12.0/migraph/man/diversity.Rd | 34 migraph-0.12.0/migraph/man/features.Rd | 50 migraph-0.12.0/migraph/man/figures/README-layout-comparison-1.png |only migraph-0.12.0/migraph/man/grab.Rd | 44 migraph-0.12.0/migraph/man/ison_networkers.Rd | 2 migraph-0.12.0/migraph/man/network_census.Rd |only migraph-0.12.0/migraph/man/node_census.Rd | 2 migraph-0.12.0/migraph/man/tests.Rd | 4 migraph-0.12.0/migraph/tests/testthat/test-make_create.R | 2 migraph-0.12.0/migraph/tests/testthat/test-manip_as.R | 8 migraph-0.12.0/migraph/tests/testthat/test-manip_grab.R | 26 migraph-0.12.0/migraph/tests/testthat/test-manip_to.R | 12 migraph-0.12.0/migraph/tests/testthat/test-mark_nodes.R | 8 migraph-0.12.0/migraph/tests/testthat/test-mark_ties.R | 6 migraph-0.12.0/migraph/tests/testthat/test-measure_centrality.R | 42 migraph-0.12.0/migraph/tests/testthat/test-measure_closure.R | 42 migraph-0.12.0/migraph/tests/testthat/test-measure_cohesion.R | 20 migraph-0.12.0/migraph/tests/testthat/test-measure_diversity.R | 12 migraph-0.12.0/migraph/tests/testthat/test-measure_features.R | 38 migraph-0.12.0/migraph/tests/testthat/test-measure_holes.R | 16 migraph-0.12.0/migraph/tests/testthat/test-member_community.R | 2 migraph-0.12.0/migraph/tests/testthat/test-member_equivalence.R | 16 migraph-0.12.0/migraph/tests/testthat/test-model_tests.R | 12 migraph-0.12.0/migraph/tests/testthat/test-motif_census.R | 30 migraph-0.12.0/migraph/vignettes/p1data.Rmd | 374 +-- migraph-0.12.0/migraph/vignettes/p1data.Rmd.orig | 7 migraph-0.12.0/migraph/vignettes/p2visualisation.Rmd |only migraph-0.12.0/migraph/vignettes/p2visualisation.Rmd.orig |only migraph-0.12.0/migraph/vignettes/p3centrality.Rmd | 110 migraph-0.12.0/migraph/vignettes/p3centrality.Rmd.orig | 17 migraph-0.12.0/migraph/vignettes/p5equivalence.Rmd | 96 migraph-0.12.0/migraph/vignettes/p5equivalence.Rmd.orig | 1 migraph-0.12.0/migraph/vignettes/p7linearmodel.Rmd | 118 - migraph-0.12.0/migraph/vignettes/p7linearmodel.Rmd.orig | 31 migraph-0.12.0/migraph/vignettes/teaching/addingnames-1.png |binary migraph-0.12.0/migraph/vignettes/teaching/blaugroups-1.png |binary migraph-0.12.0/migraph/vignettes/teaching/blaugroups-2.png |binary migraph-0.12.0/migraph/vignettes/teaching/constraintplot-1.png |binary migraph-0.12.0/migraph/vignettes/teaching/cugqap-1.png |binary migraph-0.12.0/migraph/vignettes/teaching/find-se-1.png |binary migraph-0.12.0/migraph/vignettes/teaching/ggid-1.png |binary migraph-0.12.0/migraph/vignettes/teaching/ggid-2.png |binary migraph-0.12.0/migraph/vignettes/teaching/ggid-3.png |binary migraph-0.12.0/migraph/vignettes/teaching/ggid-4.png |binary migraph-0.12.0/migraph/vignettes/teaching/ggrapheg-1.png |only migraph-0.12.0/migraph/vignettes/teaching/intro-eies-1.png |binary migraph-0.12.0/migraph/vignettes/teaching/layoutseg-1.png |only migraph-0.12.0/migraph/vignettes/teaching/migrapheg-1.png |only migraph-0.12.0/migraph/vignettes/teaching/migraphexample2-1.png |only migraph-0.12.0/migraph/vignettes/teaching/multiplot-1.png |binary migraph-0.12.0/migraph/vignettes/teaching/patchwork-1.png |only migraph-0.12.0/migraph/vignettes/teaching/patchwork-2.png |only migraph-0.12.0/migraph/vignettes/teaching/perm-1.png |binary migraph-0.12.0/migraph/vignettes/teaching/qap-interp-1.png |binary migraph-0.12.0/migraph/vignettes/teaching/rando-1.png |binary migraph-0.12.0/migraph/vignettes/teaching/separatingnets-1.png |binary migraph-0.12.0/migraph/vignettes/teaching/strplot-1.png |binary migraph-0.12.0/migraph/vignettes/teaching/structblock-1.png |binary migraph-0.12.0/migraph/vignettes/teaching/unnamed-chunk-2-1.png |binary 116 files changed, 2792 insertions(+), 2647 deletions(-)
Title: For Writing Geneva Graduate Institute Documents
Description: A set of tools for writing documents
according to Geneva Graduate Institute conventions and regulations.
The most common use is for writing and compiling theses or thesis
chapters, as drafts or for examination with correct preamble formatting.
However, the package also offers users to create HTML presentation
slides with 'xaringan', complete problem sets, format posters, and,
for course instructors, prepare a syllabus.
The package includes additional functions for institutional color palettes,
an institutional 'ggplot' theme, a function for counting manuscript words,
and a bibliographical analysis toolkit.
Author: James Hollway [aut, cre, cph] ,
Bernhard Bieri [ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between iheiddown versions 0.9.3 dated 2022-05-13 and 0.9.5 dated 2022-09-27
iheiddown-0.9.3/iheiddown/vignettes/images/poster/1-Select_Template.png |only iheiddown-0.9.5/iheiddown/DESCRIPTION | 21 +++-- iheiddown-0.9.5/iheiddown/MD5 | 36 +++++----- iheiddown-0.9.5/iheiddown/NEWS.md | 19 +++++ iheiddown-0.9.5/iheiddown/R/bibfix.R | 1 iheiddown-0.9.5/iheiddown/R/bibstats.R | 32 ++++++-- iheiddown-0.9.5/iheiddown/R/poster_html.R | 10 ++ iheiddown-0.9.5/iheiddown/R/theme.R | 2 iheiddown-0.9.5/iheiddown/build/vignette.rds |binary iheiddown-0.9.5/iheiddown/inst/doc/poster.R | 4 - iheiddown-0.9.5/iheiddown/inst/doc/poster.Rmd | 4 - iheiddown-0.9.5/iheiddown/inst/doc/poster.html | 4 - iheiddown-0.9.5/iheiddown/inst/doc/presentations.html | 17 +++- iheiddown-0.9.5/iheiddown/inst/doc/problemset.html | 17 +++- iheiddown-0.9.5/iheiddown/inst/doc/syllabus.html | 4 - iheiddown-0.9.5/iheiddown/inst/doc/thesis.html | 4 - iheiddown-0.9.5/iheiddown/inst/rmarkdown/templates/thesis_pdf/resources/template.tex | 18 ++++- iheiddown-0.9.5/iheiddown/tests/testthat/test-bibstats.R | 10 +- iheiddown-0.9.5/iheiddown/vignettes/images/poster/select_template.png |only iheiddown-0.9.5/iheiddown/vignettes/poster.Rmd | 4 - 20 files changed, 137 insertions(+), 70 deletions(-)
Title: Parser for mzML, mzXML, and netCDF Files (Mass Spectrometry
Data)
Description: A tiny parser to extract mass spectra data and metadata table of MS acquisition properties from mzML, mzXML and netCDF mass spectrometry files.
Author: Sadjad Fakouri-Baygi [cre, aut]
,
Dinesh Barupal [aut]
Maintainer: Sadjad Fakouri-Baygi <sadjad.fakouri-baygi@mssm.edu>
Diff between IDSL.MXP versions 1.5 dated 2022-07-07 and 1.6 dated 2022-09-27
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- man/MXP_locate_regex.Rd | 4 ++-- man/getScanTable.Rd | 4 ++-- man/getSpectra.Rd | 4 ++-- man/peak2list.Rd | 4 ++-- 6 files changed, 16 insertions(+), 16 deletions(-)
Title: Intrinsic Peak Analysis (IPA) for HRMS Data
Description: A sophisticated pipeline for processing LC/HRMS data to extract signals of organic compounds. The package performs isotope pairing, peak detection, alignment, RT correction, gap filling, peak annotation and visualization of extracted ion chromatograms (EIC) and total ion chromatograms (TIC).
Author: Sadjad Fakouri-Baygi [cre, aut]
,
Dinesh Barupal [aut]
Maintainer: Sadjad Fakouri-Baygi <sadjad.fakouri-baygi@mssm.edu>
Diff between IDSL.IPA versions 2.2 dated 2022-09-09 and 2.3 dated 2022-09-27
DESCRIPTION | 6 - MD5 | 50 ++++++----- R/IPA_CompoundsAnnotation.R | 30 ++++-- R/IPA_GapFiller.R | 28 +++++- R/IPA_IsotopePairing.R | 18 +++- R/IPA_PeakAlignment.R | 40 +++++---- R/IPA_PeakAnalyzer.R | 16 +++ R/IPA_PeaklistAnnotation.R | 28 ++++-- R/IPA_TargetedAnalysis.R | 15 +-- R/IPA_Workflow.R | 173 +++++++++++++++++++++++++++------------ R/IPA_gsub.R |only R/IPA_logRecorder.R |only R/IPA_xlsxAnalyzer.R | 5 - R/global.R | 2 R/plot_mz_eic.R | 2 R/plot_simple_tic.R | 2 build/partial.rdb |binary inst/extdata/IPA_parameters.xlsx |binary man/IPA_CompoundsAnnotation.Rd | 2 man/IPA_GapFiller.Rd | 2 man/IPA_IsotopePairing.Rd | 2 man/IPA_PeakAlignment.Rd | 2 man/IPA_PeakAnalyzer.Rd | 2 man/IPA_PeaklistAnnotation.Rd | 2 man/IPA_TargetedAnalysis.Rd | 2 man/IPA_Workflow.Rd | 2 man/IPA_gsub.Rd |only man/IPA_logRecorder.Rd |only 28 files changed, 285 insertions(+), 146 deletions(-)
Title: Fast and Flexible Implementations of Exploratory Factor Analysis
Tools
Description: Provides functions to perform exploratory factor analysis (EFA) procedures and compare their solutions. The goal is to provide state-of-the-art factor retention methods and a high degree of flexibility in the EFA procedures. This way, for example, implementations from R 'psych' and 'SPSS' can be compared. Moreover, functions for Schmid-Leiman transformation and the computation of omegas are provided. To speed up the analyses, some of the iterative procedures, like principal axis factoring (PAF), are implemented in C++.
Author: Markus Steiner [aut, cre],
Silvia Grieder [aut],
William Revelle [ctb],
Max Auerswald [ctb],
Morten Moshagen [ctb],
John Ruscio [ctb],
Brendan Roche [ctb],
Urbano Lorenzo-Seva [ctb],
David Navarro-Gonzalez [ctb]
Maintainer: Markus Steiner <markus.d.steiner@gmail.com>
Diff between EFAtools versions 0.4.1 dated 2022-04-24 and 0.4.2 dated 2022-09-27
DESCRIPTION | 8 MD5 | 24 +- NEWS.md | 14 + R/PARALLEL.R | 5 R/helper.R | 2 build/vignette.rds |binary inst/doc/EFAtools.html | 299 ++++++++++++++++++------------------- inst/doc/Replicate_SPSS_psych.html | 31 ++- tests/testthat/test-HULL.R | 26 +-- tests/testthat/test-N_FACTORS.R | 26 +-- tests/testthat/test-PARALLEL.R | 24 ++ tests/testthat/test-SMT.R | 24 +- tests/testthat/test-helper.R | 4 13 files changed, 272 insertions(+), 215 deletions(-)
Title: Authentication Management for 'Shiny' Applications
Description: Simple and secure authentification mechanism for single 'Shiny' applications.
Credentials are stored in an encrypted 'SQLite' database. Source code of main application
is protected until authentication is successful.
Author: Benoit Thieurmel [aut, cre],
Victor Perrier [aut]
Maintainer: Benoit Thieurmel <bthieurmel@gmail.com>
Diff between shinymanager versions 1.0.400 dated 2021-06-16 and 1.0.410 dated 2022-09-27
DESCRIPTION | 12 - MD5 | 77 ++++-- NEWS.md | 15 + R/credentials-db.R | 12 - R/fab_button.R | 2 R/language.R | 355 +++++++++++++++++++++++++----- R/module-admin.R | 246 ++++++++++++-------- R/module-auth.R | 60 +++-- R/module-pwd.R | 17 + R/modules-logs.R | 26 +- R/secure-app.R | 43 ++- R/shiny-utils.R | 17 + R/utils.R | 117 +++++++++ README.md | 89 +++++++ build/vignette.rds |binary inst/article |only inst/assets/fab-button/fab-button.min.css | 2 inst/assets/fab-button/mfb.scss | 2 inst/assets/shiny-utils.js | 4 inst/demo_app |only inst/doc/SQLite_Admin.html | 250 +++++++++++++++++++-- man/create_db.Rd | 11 man/fab_button.Rd | 2 man/figures/custom.png |only man/figures/shinymanager_ds.jpg |only man/module-authentication.Rd | 8 man/secure-app.Rd | 20 + tests/testthat/test-credentials-db.R | 2 tests/testthat/test-language.R | 2 tests/testthat/test-tokens.R | 2 30 files changed, 1136 insertions(+), 257 deletions(-)
Title: Identify Distributions that Match Reported Sample Parameters
(SPRITE)
Description: The SPRITE algorithm creates possible distributions of discrete responses
based on reported sample parameters, such as mean, standard deviation and range
(Heathers et al., 2018, <doi:10.7287/peerj.preprints.26968v1>). This package implements it,
drawing heavily on the code for Nick Brown's 'rSPRITE' Shiny app <https://shiny.ieis.tue.nl/sprite/>.
In addition, it supports the modeling of distributions based on multi-item (Likert-type)
scales and the use of restrictions on the frequency of particular responses.
Author: Lukas Wallrich [aut, cre] ,
Aurelien Allard [ctb]
Maintainer: Lukas Wallrich <lukas.wallrich@gmail.com>
Diff between rsprite2 versions 0.1.0 dated 2021-09-22 and 0.2.0 dated 2022-09-27
DESCRIPTION | 21 +- MD5 | 31 +-- NAMESPACE | 1 NEWS.md | 7 R/core-functions.R | 215 +++++++++++++++++++++-- README.md | 15 + build/partial.rdb |binary inst/REFERENCES.bib | 10 + man/GRIMMER_test.Rd |only man/GRIM_test.Rd | 88 ++++----- man/find_possible_distribution.Rd | 70 +++---- man/find_possible_distributions.Rd | 92 ++++----- man/plot_distributions.Rd | 92 ++++----- man/rsprite2-package.Rd | 60 +++--- man/set_parameters.Rd | 163 ++++++++--------- tests/testthat/_snaps/core-and-plot-functions.md | 82 ++++---- tests/testthat/test-core-and-plot-functions.R | 15 + 17 files changed, 595 insertions(+), 367 deletions(-)
Title: Automatic Colors for Multi-Dimensional Data
Description: Assign distinct colors to arbitrary multi-dimensional data, considering its structure.
Author: Oren Ben-Kiki [aut, cre],
Weizmann Institute of Science [cph]
Maintainer: Oren Ben-Kiki <oren@ben-kiki.org>
Diff between chameleon versions 0.2-1 dated 2022-07-13 and 0.2-3 dated 2022-09-27
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS | 2 +- R/chameleon.R | 29 +++++++++++++++-------------- inst/doc/examples.html | 19 +++++++++++++------ 5 files changed, 38 insertions(+), 30 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-13 1.3.2