Thu, 06 Oct 2022

Package elections.dtree (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-09-14 1.0.0

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Package tidyterra (with last version 0.2.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-09-29 0.2.2
2022-09-23 0.2.1
2022-06-21 0.2.0
2022-05-24 0.1.0

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Package receptiviti updated to version 0.1.2 with previous version 0.1.0 dated 2022-09-14

Title: Text Analysis Through the 'Receptiviti' API
Description: Send text to the <https://www.receptiviti.com> API to be scored by all available frameworks.
Author: Receptiviti Inc. [fnd, cph], Kent English [cre], Micah Iserman [aut, ctr]
Maintainer: Kent English <kenglish@receptiviti.com>

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Package curl updated to version 4.3.3 with previous version 4.3.2 dated 2021-06-23

Title: A Modern and Flexible Web Client for R
Description: The curl() and curl_download() functions provide highly configurable drop-in replacements for base url() and download.file() with better performance, support for encryption (https, ftps), gzip compression, authentication, and other 'libcurl' goodies. The core of the package implements a framework for performing fully customized requests where data can be processed either in memory, on disk, or streaming via the callback or connection interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr' package which builds on this package with http specific tools and logic.
Author: Jeroen Ooms [aut, cre] , Hadley Wickham [ctb], RStudio [cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

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Package valuemap updated to version 2.0.4 with previous version 2.0.0 dated 2022-03-09

Title: Making Choropleth Map
Description: You can easily visualize your 'sf' polygons or data.frame with h3 address. While 'leaflet' package is too raw for data analysis, this package can save data analysts' efforts & time with pre-set visualize options.
Author: Huncheol Ha [aut, cre]
Maintainer: Huncheol Ha <hancury@gmail.com>

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Package rotl updated to version 3.0.14 with previous version 3.0.12 dated 2021-12-08

Title: Interface to the 'Open Tree of Life' API
Description: An interface to the 'Open Tree of Life' API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The 'Open Tree of Life' aims at assembling a comprehensive phylogenetic tree for all named species.
Author: Francois Michonneau [aut, cre] , Joseph Brown [aut] , David Winter [aut] , Scott Chamberlain [rev]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>

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Package RCzechia updated to version 1.9.4 with previous version 1.9.2 dated 2022-05-14

Title: Spatial Objects of the Czech Republic
Description: Administrative regions and other spatial objects of the Czech Republic.
Author: Jindra Lacko [aut, cre]
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>

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Package metR updated to version 0.13.0 with previous version 0.12.0 dated 2022-02-15

Title: Tools for Easier Analysis of Meteorological Fields
Description: Many useful functions and extensions for dealing with meteorological data in the tidy data framework. Extends 'ggplot2' for better plotting of scalar and vector fields and provides commonly used analysis methods in the atmospheric sciences.
Author: Elio Campitelli [cre, aut]
Maintainer: Elio Campitelli <elio.campitelli@cima.fcen.uba.ar>

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Package isoband updated to version 0.2.6 with previous version 0.2.5 dated 2021-07-13

Title: Generate Isolines and Isobands from Regularly Spaced Elevation Grids
Description: A fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data.
Author: Claus O. Wilke [aut, cre] , Thomas Lin Pedersen [aut] , testthat and Catch authors [ctb]
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>

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Package covidcast updated to version 0.4.3 with previous version 0.4.2 dated 2021-05-04

Title: Client for Delphi's 'COVIDcast Epidata' API
Description: Tools for Delphi's 'COVIDcast Epidata' API: data access, maps and time series plotting, and basic signal processing. The API includes a collection of numerous indicators relevant to the COVID-19 pandemic in the United States, including official reports, de-identified aggregated medical claims data, large-scale surveys of symptoms and public behavior, and mobility data, typically updated daily and at the county level. All data sources are documented at <https://cmu-delphi.github.io/delphi-epidata/api/covidcast.html>.
Author: Taylor Arnold [aut], Jacob Bien [aut], Logan Brooks [aut], Sarah Colquhoun [aut], David Farrow [aut], Jed Grabman [ctb], Pedrito Maynard-Zhang [ctb], Alex Reinhart [aut, cre] , Ryan Tibshirani [aut]
Maintainer: Alex Reinhart <areinhar@stat.cmu.edu>

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Package SSDforR updated to version 1.5.28 with previous version 1.5.26 dated 2022-09-16

Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre], Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>

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Package howler updated to version 0.2.1 with previous version 0.2.0 dated 2022-07-21

Title: 'Shiny' Extension of 'howler.js'
Description: Audio interactivity within 'shiny' applications using 'howler.js'. Enables the status of the audio player to be sent from the UI to the server, and events such as playing and pausing the audio can be triggered from the server.
Author: Ashley Baldry [aut, cre], James Simpson [aut]
Maintainer: Ashley Baldry <arbaldry91@gmail.com>

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Package appler updated to version 0.1.4 with previous version 0.1.3 dated 2022-03-28

Title: 'Apple App Store' and 'iTunes' Data Extraction
Description: Using 'Apple App Store' <https://www.apple.com/app-store/> web scraping and 'iTunes' API <https://performance-partners.apple.com/resources/documentation/itunes-store-web-service-search-api.html> to extract content information, app ratings and reviews.
Author: Ashley Baldry [aut, cre]
Maintainer: Ashley Baldry <arbaldry91@gmail.com>

Diff between appler versions 0.1.3 dated 2022-03-28 and 0.1.4 dated 2022-10-06

 DESCRIPTION         |   10 +++++-----
 MD5                 |   10 +++++-----
 NEWS.md             |    4 ++++
 R/info.R            |    4 ++--
 man/lookup_apple.Rd |    2 +-
 man/search_apple.Rd |    2 +-
 6 files changed, 18 insertions(+), 14 deletions(-)

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New package tweetcheck with initial version 0.1.0
Package: tweetcheck
Title: Parse and Validate Tweet Text
Version: 0.1.0
Description: An interface to 'twitter-text', a 'JavaScript' library which is responsible for determining the length/validity of a tweet and identifying/linking any URLs or special tags (e.g. mentions or hashtags) which may be present.
License: Apache License (>= 2)
Encoding: UTF-8
Imports: tibble, V8
NeedsCompilation: no
Packaged: 2022-10-05 23:19:48 UTC; jacobscott
Author: Jacob Scott [aut, cre], Twitter, Inc [aut], Other contributors [aut]
Maintainer: Jacob Scott <jscott2718@gmail.com>
Repository: CRAN
Date/Publication: 2022-10-06 16:20:02 UTC

More information about tweetcheck at CRAN
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New package snSMART with initial version 0.2.1
Package: snSMART
Title: Small N Sequential Multiple Assignment Randomized Trial Methods
Version: 0.2.1
Maintainer: Michael Kleinsasser <mkleinsa@umich.edu>
Description: Consolidated data simulation, sample size calculation and analysis functions for several snSMART (small sample sequential, multiple assignment, randomized trial) designs under one library. See Wei, B., Braun, T.M., Tamura, R.N. and Kidwell, K.M. "A Bayesian analysis of small n sequential multiple assignment randomized trials (snSMARTs)." (2018) Statistics in medicine, 37(26), pp.3723-3732 <doi:10.1002/sim.7900>.
License: GPL-2
Depends: R (>= 3.5.0)
Imports: bayestestR, geepack, rjags, HDInterval, truncdist, condMVNorm, pracma, cubature, tidyr, EnvStats
Suggests: coda
SystemRequirements: JAGS 4.x.y
URL: https://github.com/sidiwang/snSMART
BugReports: https://github.com/sidiwang/snSMART/issues
Encoding: UTF-8
LazyData: true
Biarch: true
NeedsCompilation: no
Packaged: 2022-10-05 17:16:22 UTC; mk
Author: Sidi Wang [aut], Kelley Kidwell [aut], Michael Kleinsasser [cre]
Repository: CRAN
Date/Publication: 2022-10-06 16:10:02 UTC

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Package refund updated to version 0.1-28 with previous version 0.1-26 dated 2022-04-16

Title: Regression with Functional Data
Description: Methods for regression for functional data, including function-on-scalar, scalar-on-function, and function-on-function regression. Some of the functions are applicable to image data.
Author: Jeff Goldsmith [aut], Fabian Scheipl [aut], Lei Huang [aut], Julia Wrobel [aut, cre], Chongzhi Di [aut], Jonathan Gellar [aut], Jaroslaw Harezlak [aut], Mathew W. McLean [aut], Bruce Swihart [aut], Luo Xiao [aut], Ciprian Crainiceanu [aut], Philip T. [...truncated...]
Maintainer: Julia Wrobel <julia.wrobel@cuanschutz.edu>

Diff between refund versions 0.1-26 dated 2022-04-16 and 0.1-28 dated 2022-10-06

 DESCRIPTION         |   16 +++++++++-------
 MD5                 |   20 ++++++++++----------
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 11 files changed, 40 insertions(+), 27 deletions(-)

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New package pirouette with initial version 1.6.4
Package: pirouette
Title: Create a Bayesian Posterior from a Phylogeny
Version: 1.6.4
Maintainer: Richel J.C. Bilderbeek <richel@richelbilderbeek.nl>
Description: Theoretical biologists are interested in measuring the extent at which we can measure the truth. This package allows to create a Bayesian posterior from a phylogeny that depicts the true evolutionary relationships. The given and true phylogeny can than be compared to the posterior phylogenies. Richèl J. C. Bilderbeek, Giovanni Laudanno, Rampal S. Etienne (2020) "Quantifying the impact of an inference model in Bayesian phylogenetics" <doi:10.1111/2041-210X.13514>.
License: GPL-3
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://github.com/richelbilderbeek/pirouette/
BugReports: https://github.com/richelbilderbeek/pirouette/issues
Depends: babette (>= 2.1.1)
Imports: ape, beautier (>= 2.6.2), beastier (>= 2.4.6), DDD, forcats, magrittr, mauricer (>= 2.5), mcbette (>= 1.7), nodeSub, phangorn, phytools, plyr, pryr, rappdirs, readr, stringr, TESS, tibble, tidyr, tracerer (>= 2.0.2), xtable
Suggests: devtools, dplyr, ggplot2, knitr, lintr, markdown, nLTT (>= 1.4.3), rmarkdown, Rmpfr, testthat (>= 2.1.0)
SystemRequirements: BEAST2 (https://www.beast2.org/)
NeedsCompilation: no
Packaged: 2022-10-06 06:49:19 UTC; richel
Author: Richel J.C. Bilderbeek [aut, cre] , Giovanni Laudanno [aut], Thijs Janzen [ctb]
Repository: CRAN
Date/Publication: 2022-10-06 16:30:09 UTC

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New package namer with initial version 0.1.6
Package: namer
Title: Names Your 'R Markdown' Chunks
Version: 0.1.6
Description: It names the 'R Markdown' chunks of files based on the filename.
License: GPL (>= 3)
URL: https://github.com/jumpingrivers/namer, https://jumpingrivers.github.io/namer/
BugReports: https://github.com/jumpingrivers/namer/issues
Imports: cli, dplyr, fs, glue, magrittr, purrr, rstudioapi, tibble
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-GB
NeedsCompilation: no
Packaged: 2022-10-04 14:18:37 UTC; rhian
Author: Rhian Davies [aut, cre], Steph Locke [aut], Maelle Salmon [aut] , Ellis Valentiner [ctb], Charlie Hadley [ctb] , Jumping Rivers [fnd] , Han Oostdijk [ctb] , Patrick Schratz [ctb]
Maintainer: Rhian Davies <rhian@jumpingrivers.com>
Repository: CRAN
Date/Publication: 2022-10-06 16:30:16 UTC

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New package KMD with initial version 0.1.0
Package: KMD
Title: Kernel Measure of Multi-Sample Dissimilarity
Version: 0.1.0
Maintainer: Zhen Huang <zh2395@columbia.edu>
Description: Implementations of the kernel measure of multi-sample dissimilarity (KMD) between several samples using K-nearest neighbor graphs and minimum spanning trees. The KMD measures the dissimilarity between multiple samples, based on the observations from them. It converges to the population quantity (depending on the kernel) which is between 0 and 1. A small value indicates the multiple samples are from the same distribution, and a large value indicates the corresponding distributions are different. The population quantity is 0 if and only if all distributions are the same, and 1 if and only if all distributions are mutually singular. The package also implements the tests based on KMD for H0: the M distributions are equal against H1: not all the distributions are equal. Both permutation test and asymptotic test are available. These tests are consistent against all alternatives where at least two samples have different distributions. For more details on KMD and the associated tests, see Huan [...truncated...]
License: GPL-3
Encoding: UTF-8
Depends: R (>= 4.0.0), data.table
Imports: RANN, proxy, mlpack, boot, igraph
NeedsCompilation: no
Packaged: 2022-10-05 18:21:01 UTC; huangzhen
Author: Zhen Huang [aut, cre]
Repository: CRAN
Date/Publication: 2022-10-06 16:10:12 UTC

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New package bupaverse with initial version 0.1.0
Package: bupaverse
Title: Easily Install and Load the 'bupaverse'
Version: 0.1.0
Description: The 'bupaverse' is an open-source, integrated suite of R-packages for handling and analysing business process data, developed by the Business Informatics research group at Hasselt University, Belgium. Profoundly inspired by the 'tidyverse' package, the 'bupaverse' package is designed to facilitate the installation and loading of multiple 'bupaverse' packages in a single step. Learn more about 'bupaverse' at the <https://bupar.net> homepage.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 3.5.0)
Imports: bupaR (>= 0.5.1), edeaR (>= 0.9.1), eventdataR (>= 0.3.1), processcheckR (>= 0.1.4), processmapR (>= 0.5.2), purrr (>= 0.3.4), magrittr (>= 2.0.0), rlang (>= 1.0.0), cli (>= 3.2.0), glue (>= 1.0.0)
Suggests: covr, knitr, rmarkdown
URL: https://bupar.net/, https://github.com/bupaverse/bupaverse/, https://bupaverse.github.io/bupaverse/
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-10-06 09:19:35 UTC; lucp10322
Author: Gerard van Hulzen [aut] , Gert Janssenswillen [aut, cre]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Repository: CRAN
Date/Publication: 2022-10-06 16:30:19 UTC

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New package bearishTrader with initial version 1.0.2
Package: bearishTrader
Title: Trading Strategies for Bearish Outlook
Version: 1.0.2
Author: MaheshP Kumar [aut, cre]
Maintainer: MaheshP Kumar <maheshparamjitkumar@gmail.com>
Imports: graphics
Description: Stock, Options and Futures Trading Strategies for Traders and Investors with Bearish Outlook. The indicators, strategies, calculations, functions and all other discussions are for academic, research, and educational purposes only and should not be construed as investment advice and come with absolutely no Liability. Guy Cohen (“The Bible of Options Strategies (2nd ed.)”, 2015, ISBN: 9780133964028). Juan A. Serur, Juan A. Serur (“151 Trading Strategies”, 2018, ISBN: 9783030027919). Chartered Financial Analyst Institute ("Chartered Financial Analyst Program Curriculum 2020 Level I Volumes 1-6. (Vol. 5, pp. 385-453)", 2019, ISBN: 9781119593577). John C. Hull (“Options, Futures, and Other Derivatives (11th ed.)”, 2022, ISBN: 9780136939979).
License: GPL-3
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2022-10-05 19:57:31 UTC; mahes
Repository: CRAN
Date/Publication: 2022-10-06 16:10:05 UTC

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Package accessibility updated to version 1.0.1 with previous version 1.0.0 dated 2022-07-22

Title: Transport Accessibility Measures
Description: A set of fast and convenient functions to calculate multiple transport accessibility measures. Given a pre-computed travel cost matrix and a land use dataset (containing the location of jobs, healthcare and population, for example), the package allows one to calculate active and passive accessibility levels using multiple accessibility measures, such as: cumulative opportunities (using either travel cost cutoffs or intervals), minimum travel cost to closest N number of activities, gravity-based (with different decay functions) and different floating catchment area methods.
Author: Rafael H. M. Pereira [aut] , Daniel Herszenhut [aut, cre] , Ipea - Institute for Applied Economic Research [cph, fnd]
Maintainer: Daniel Herszenhut <dhersz@gmail.com>

Diff between accessibility versions 1.0.0 dated 2022-07-22 and 1.0.1 dated 2022-10-06

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New package avfintools with initial version 0.1.0
Package: avfintools
Title: Financial Analysis Tools Using Data from 'Alpha Vantager'
Version: 0.1.0
Maintainer: Edward Wei <edwwei2020@gmail.com>
Description: To pull data from 'ALPHA VANTAGE' <https://www.alphavantage.co/>, use the av_api_key() function from 'alphavantager' for inserting your API key. This is a complement to the 'alphavantager' package from CRAN. Contains commonly used quantitative finance tools. 'avfintools' stands for 'ALPHA VANTAGE' Finance Tools, as it depends on sourcing financial data from the 'ALPHA VANTAGE' <https://www.alphavantage.co/documentation/> API.
Language: en-US
License: CC0
Encoding: UTF-8
LazyData: true
Depends: R(>= 4.0)
Imports: methods(>= 4.2.0), alphavantager(>= 0.1.2), dplyr(>= 1.0.9), lubridate(>= 1.8.0), plotly(>= 4.10.0), ggplot2(>= 3.3.6), tibble(>= 3.1.7)
NeedsCompilation: no
Packaged: 2022-10-05 20:01:13 UTC; edmon
Author: Edward Wei [aut, cre, cph]
Repository: CRAN
Date/Publication: 2022-10-06 16:10:08 UTC

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Package ggnewscale updated to version 0.4.8 with previous version 0.4.7 dated 2022-03-25

Title: Multiple Fill and Colour Scales in 'ggplot2'
Description: Use multiple fill and colour scales in 'ggplot2'.
Author: Elio Campitelli [cre, aut]
Maintainer: Elio Campitelli <elio.campitelli@cima.fcen.uba.ar>

Diff between ggnewscale versions 0.4.7 dated 2022-03-25 and 0.4.8 dated 2022-10-06

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Package av updated to version 0.8.2 with previous version 0.8.1 dated 2022-08-20

Title: Working with Audio and Video in R
Description: Bindings to 'FFmpeg' <http://www.ffmpeg.org/> AV library for working with audio and video in R. Generates high quality video from images or R graphics with custom audio. Also offers high performance tools for reading raw audio, creating 'spectrograms', and converting between countless audio / video formats. This package interfaces directly to the C API and does not require any command line utilities.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between av versions 0.8.1 dated 2022-08-20 and 0.8.2 dated 2022-10-06

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More information about av at CRAN
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Package listr updated to version 0.1.0 with previous version 0.0.2 dated 2022-04-25

Title: Tools for Lists
Description: Tools for common operations on lists. Provided are short-cuts to operations like selecting and merging data stored in lists. The functions in this package are designed to be used with pipes.
Author: Christian Hohenfeld [aut, cre, cph]
Maintainer: Christian Hohenfeld <r@hohenfeld.is>

Diff between listr versions 0.0.2 dated 2022-04-25 and 0.1.0 dated 2022-10-06

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Package adiv updated to version 2.2 with previous version 2.1.2 dated 2022-05-20

Title: Analysis of Diversity
Description: Functions, data sets and examples for the calculation of various indices of biodiversity including species, functional and phylogenetic diversity. Part of the indices are expressed in terms of equivalent numbers of species. The package also provides ways to partition biodiversity across spatial or temporal scales (alpha, beta, gamma diversities). In addition to the quantification of biodiversity, ordination approaches are available which rely on diversity indices and allow the detailed identification of species, functional or phylogenetic differences between communities.
Author: Sandrine Pavoine
Maintainer: Sandrine Pavoine <sandrine.pavoine@mnhn.fr>

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Package mpathsenser updated to version 1.1.0 with previous version 1.0.3 dated 2022-06-01

Title: Process and Analyse Data from m-Path Sense
Description: Overcomes one of the major challenges in mobile (passive) sensing, namely being able to pre-process the raw data that comes from a mobile sensing app, specifically "m-Path Sense" <https://m-path.io>. The main task of 'mpathsenser' is therefore to read "m-Path Sense" JSON files into a database and provide several convenience functions to aid in data processing.
Author: Koen Niemeijer [aut, cre] , Kristof Meers [ctb] , KU Leuven [cph, fnd]
Maintainer: Koen Niemeijer <koen.niemeijer@kuleuven.be>

Diff between mpathsenser versions 1.0.3 dated 2022-06-01 and 1.1.0 dated 2022-10-06

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Package GGIR updated to version 2.8-2 with previous version 2.8-1 dated 2022-10-01

Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in Migueles and colleagues (JMPB 2019), and van Hees and colleagues (JApplPhysiol 2014; PLoSONE 2015). The package has been developed and tested for binary data from 'GENEActiv' <https://activinsights.com/> and GENEA devices (not for sale), .csv-export data from 'Actigraph' <https://actigraphcorp.com> devices, and .cwa and .wav-format data from 'Axivity' <https://axivity.com>. These devices are currently widely used in research on human daily physical activity. Further, the package can handle accelerometer data file from any other sensor brand providing that the data is stored in csv format and has either no header or a two column header. Also the package allows for external function embedding.
Author: Vincent T van Hees [aut, cre], Jairo H Migueles [aut], Severine Sabia [ctb], Matthew R Patterson [ctb], Zhou Fang [ctb], Joe Heywood [ctb], Joan Capdevila Pujol [ctb], Lena Kushleyeva [ctb], Mathilde Chen [ctb], Manasa Yerramalla [ctb], Patrick Bos [ [...truncated...]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>

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Package Rtrack updated to version 1.0.7 with previous version 1.0.0 dated 2020-05-04

Title: Spatial Navigation Strategy Analysis
Description: A toolkit for the analysis of paths from spatial tracking experiments (such as the Morris water maze) and calculation of goal-finding strategies. This package is centered on an approach using machine learning for path classification.
Author: Rupert Overall [aut, cre]
Maintainer: Rupert Overall <rtrack@rupertoverall.net>

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Package CSCNet updated to version 0.1.1 with previous version 0.1.0 dated 2022-08-16

Title: Fitting and Tuning Regularized Cause-Specific Cox Models with Elastic-Net Penalty
Description: Flexible tools to fit, tune and obtain absolute risk predictions from regularized cause-specific cox models with elastic-net penalty.
Author: Shahin Roshani [aut, cre, cph]
Maintainer: Shahin Roshani <s.roshani@nki.nl>

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Package besthr updated to version 0.3.1 with previous version 0.3.0 dated 2022-09-13

Title: Generating Bootstrap Estimation Distributions of HR Data
Description: Creates plots showing scored HR experiments and plots of distribution of means of ranks of HR score from bootstrapping. Authors (2019) <doi:10.5281/zenodo.3374507>.
Author: Dan MacLean [aut, cre]
Maintainer: Dan MacLean <dan.maclean@tsl.ac.uk>

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Package purrr updated to version 0.3.5 with previous version 0.3.4 dated 2020-04-17

Title: Functional Programming Tools
Description: A complete and consistent functional programming toolkit for R.
Author: Lionel Henry [aut, cre], Hadley Wickham [aut], RStudio [cph, fnd]
Maintainer: Lionel Henry <lionel@rstudio.com>

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Package openalexR updated to version 1.0.0 with previous version 0.0.1 dated 2022-04-22

Title: Getting Bibliographic Records from 'OpenAlex' Database Using 'DSL' API
Description: A set of tools to extract bibliographic content from 'OpenAlex' database using API <https://docs.openalex.org/api/>.
Author: Massimo Aria [aut, cre, cph] , Trang Le [aut]
Maintainer: Massimo Aria <massimo.aria@gmail.com>

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Package albatross updated to version 0.3-5 with previous version 0.3-4 dated 2022-02-25

Title: PARAFAC Analysis of Fluorescence Excitation-Emission Matrices
Description: Perform parallel factor analysis (PARAFAC: Hitchcock, 1927) <doi:10.1002/sapm192761164> on fluorescence excitation-emission matrices: handle scattering signal and inner filter effect, scale the dataset, fit the model; perform split-half validation or jack-knifing. Modified approaches such as Whittaker interpolation, randomised split-half, and fluorescence and scattering model estimation are also available. The package has a low dependency footprint and has been tested on a wide range of R versions.
Author: Ivan Krylov [aut, cre], Timur Labutin [ths], Anastasia Drozdova [rev]
Maintainer: Ivan Krylov <ikrylov@laser.chem.msu.ru>

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Package usethat (with last version 0.3.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-09-20 0.3.0

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Package BayesianTools (with last version 0.1.7) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-12-09 0.1.7
2019-01-21 0.1.6
2018-07-16 0.1.5
2017-12-20 0.1.4
2017-08-02 0.1.3
2017-05-27 0.1.2
2017-04-05 0.1.1
2017-02-05 0.1.0

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Package tidylab (with last version 4.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-11-08 4.1.1

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Package fellov (with last version 0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-02-21 0.1

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Package DSOpal updated to version 1.4.0 with previous version 1.3.1 dated 2021-08-23

Title: 'DataSHIELD' Implementation for 'Opal'
Description: 'DataSHIELD' is an infrastructure and series of R packages that enables the remote and 'non-disclosive' analysis of sensitive research data. This package is the 'DataSHIELD' interface implementation for 'Opal', which is the data integration application for biobanks by 'OBiBa'. Participant data, once collected from any data source, must be integrated and stored in a central data repository under a uniform model. 'Opal' is such a central repository. It can import, process, validate, query, analyze, report, and export data. 'Opal' is the reference implementation of the 'DataSHIELD' infrastructure.
Author: Yannick Marcon [aut, cre] , Becca Wilson [ctb] , OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>

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Package Rblpapi updated to version 0.3.14 with previous version 0.3.13 dated 2022-01-09

Title: R Interface to 'Bloomberg'
Description: An R Interface to 'Bloomberg' is provided via the 'Blp API'.
Author: Whit Armstrong, Dirk Eddelbuettel and John Laing
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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New package paleopop with initial version 2.1.3
Package: paleopop
Title: Pattern-Oriented Modeling Framework for Coupled Niche-Population Paleo-Climatic Models
Version: 2.1.3
Maintainer: Julia Pilowsky <julia.pilowsky@adelaide.edu.au>
URL: https://github.com/GlobalEcologyLab/paleopop/
BugReports: https://github.com/GlobalEcologyLab/paleopop/issues
Description: This extension of the poems pattern-oriented modeling (POM) framework provides a collection of modules and functions customized for paleontological time-scales, and optimized for single-generation transitions and large populations, across multiple generations.
Depends: R (>= 3.6.0)
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Imports: poems (>= 1.0.0), R6 (>= 2.5.0), sf (>= 0.9)
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, markdown, dplyr, raster
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-10-05 23:24:37 UTC; Julia Pilowsky
Author: Sean Haythorne [aut], Julia Pilowsky [aut, cre] , Stuart Brown [aut] , Damien Fordham [aut]
Repository: CRAN
Date/Publication: 2022-10-06 08:40:02 UTC

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Package not updated to version 1.4 with previous version 1.3 dated 2022-03-04

Title: Narrowest-Over-Threshold Change-Point Detection
Description: Provides efficient implementation of the Narrowest-Over-Threshold methodology for detecting an unknown number of change-points occurring at unknown locations in one-dimensional data following 'deterministic signal + noise' model. Currently implemented scenarios are: piecewise-constant signal, piecewise-constant signal with a heavy-tailed noise, piecewise-linear signal, piecewise-quadratic signal, piecewise-constant signal and with piecewise-constant variance of the noise. For details, see Baranowski, Chen and Fryzlewicz (2019) <doi:10.1111/rssb.12322>.
Author: Rafal Baranowski, Yining Chen, Piotr Fryzlewicz
Maintainer: Yining Chen <Y.Chen101@lse.ac.uk>

Diff between not versions 1.3 dated 2022-03-04 and 1.4 dated 2022-10-06

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Package metatools updated to version 0.1.3 with previous version 0.1.1 dated 2022-04-20

Title: Enable the Use of 'metacore' to Help Create and Check Dataset
Description: Uses the metadata information stored in 'metacore' objects to check and build metadata associated columns.
Author: Christina Fillmore [aut, cre] , Mike Stackhouse [aut] , GlaxoSmithKline LLC [cph, fnd], F. Hoffmann-La Roche AG [cph, fnd], Atorus Research LLC [cph, fnd]
Maintainer: Christina Fillmore <christina.e.fillmore@gsk.com>

Diff between metatools versions 0.1.1 dated 2022-04-20 and 0.1.3 dated 2022-10-06

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New package EcoDiet with initial version 1.0.1
Package: EcoDiet
Title: Estimating a Diet Matrix from Biotracer and Stomach Content Data
Description: Biotracers and stomach content analyses are combined in a Bayesian hierarchical model to estimate a probabilistic topology matrix (all trophic link probabilities) and a diet matrix (all diet proportions). The package relies on the JAGS software and the 'rjags' package to run a Markov chain Monte Carlo approximation of the different variables.
Version: 1.0.1
Depends: R (>= 3.5)
Imports: ggplot2 (>= 3.2), rjags (>= 4.10), coda (>= 0.19), stats (>= 3.6), utils (>= 3.6)
Suggests: knitr, rmarkdown, devtools, testthat (>= 3.0.0)
SystemRequirements: JAGS (>= 4.3)
URL: https://github.com/pyhernvann/EcoDiet
BugReports: https://github.com/pyhernvann/EcoDiet/issues
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-09-27 22:38:17 UTC; pyher
Author: Heloise Thero [aut], Pierre-Yves Hernvann [cre, aut], Didier Gascuel [aut], Dorothee Kopp [aut], Marianne Robert [aut], Jerome Guitton [aut], Etienne Rivot [aut]
Maintainer: Pierre-Yves Hernvann <pierre.yves.hernvann@gmail.com>
Repository: CRAN
Date/Publication: 2022-10-06 08:10:09 UTC

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Package DSI updated to version 1.5.0 with previous version 1.4.0 dated 2022-04-06

Title: 'DataSHIELD' Interface
Description: 'DataSHIELD' is an infrastructure and series of R packages that enables the remote and 'non-disclosive' analysis of sensitive research data. This package defines the API that is to be implemented by 'DataSHIELD' compliant data repositories.
Author: Yannick Marcon [aut, cre] , Amadou Gaye [ctb] , Paul Burton [ctb]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>

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Package BISdata updated to version 0.2-0 with previous version 0.1-1 dated 2022-03-09

Title: Download Data from the Bank for International Settlements (BIS)
Description: Functions for downloading data from the Bank for International Settlements (BIS; <https://www.bis.org/>) in Basel. Supported are only full datasets in (typically) CSV format. The package is lightweight and without dependencies; suggested packages are used only if data is to be transformed into particular data structures, for instance into 'zoo' objects. Downloaded data can optionally be cached, to avoid repeated downloads of the same files.
Author: Enrico Schumann [aut, cre]
Maintainer: Enrico Schumann <es@enricoschumann.net>

Diff between BISdata versions 0.1-1 dated 2022-03-09 and 0.2-0 dated 2022-10-06

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Package network updated to version 1.18.0 with previous version 1.17.2 dated 2022-05-21

Title: Classes for Relational Data
Description: Tools to create and modify network objects. The network class can represent a range of relational data types, and supports arbitrary vertex/edge/graph attributes.
Author: Carter T. Butts [aut, cre], David Hunter [ctb], Mark Handcock [ctb], Skye Bender-deMoll [ctb], Jeffrey Horner [ctb], Li Wang [ctb], Pavel N. Krivitsky [ctb] , Brendan Knapp [ctb] , Michal Bojanowski [ctb] , Chad Klumb [ctb]
Maintainer: Carter T. Butts <buttsc@uci.edu>

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Package landsepi updated to version 1.2.2 with previous version 1.2.0 dated 2022-10-05

Title: Landscape Epidemiology and Evolution
Description: A stochastic, spatially-explicit, demo-genetic model simulating the spread and evolution of a plant pathogen in a heterogeneous landscape to assess resistance deployment strategies. It is based on a spatial geometry for describing the landscape and allocation of different cultivars, a dispersal kernel for the dissemination of the pathogen, and a SEIR ('Susceptible-Exposed-Infectious-Removed’) structure with a discrete time step. It provides a useful tool to assess the performance of a wide range of deployment options with respect to their epidemiological, evolutionary and economic outcomes. Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett, Peter H Thrall (2018) <doi:10.1371/journal.pcbi.1006067>.
Author: Loup Rimbaud [aut] , Julien Papaix [aut], Jean-Francois Rey [aut, cre] , Marta Zaffaroni [ctb] , Jean-Loup Gaussen [ctb]
Maintainer: Jean-Francois Rey <jean-francois.rey@inrae.fr>

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Package EdSurvey updated to version 3.0.1 with previous version 3.0.0 dated 2022-09-23

Title: Analysis of NCES Education Survey and Assessment Data
Description: Read in and analyze functions for education survey and assessment data from the National Center for Education Statistics (NCES) <https://nces.ed.gov/>, including National Assessment of Educational Progress (NAEP) data <https://nces.ed.gov/nationsreportcard/> and data from the International Assessment Database: Organisation for Economic Co-operation and Development (OECD) <https://www.oecd.org/>, including Programme for International Student Assessment (PISA), Teaching and Learning International Survey (TALIS), Programme for the International Assessment of Adult Competencies (PIAAC), and International Association for the Evaluation of Educational Achievement (IEA) <https://www.iea.nl/>, including Trends in International Mathematics and Science Study (TIMSS), TIMSS Advanced, Progress in International Reading Literacy Study (PIRLS), International Civic and Citizenship Study (ICCS), International Computer and Information Literacy Study (ICILS), and Civic Education S [...truncated...]
Author: Paul Bailey [aut, cre], Ahmad Emad [aut], Huade Huo [aut], Michael Lee [aut], Yuqi Liao [aut], Alex Lishinski [aut], Trang Nguyen [aut], Qingshu Xie [aut], Jiao Yu [aut], Ting Zhang [aut], Eric Buehler [aut], person, person), Jeppe Bundsgaard [ctb], [...truncated...]
Maintainer: Paul Bailey <pbailey@air.org>

Diff between EdSurvey versions 3.0.0 dated 2022-09-23 and 3.0.1 dated 2022-10-06

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Package HKRbook updated to version 0.1.3 with previous version 0.1.2 dated 2022-08-29

Title: Apps and Data for the Book "Introduction to Statistics"
Description: Functions, Shiny apps and data for the book "Introduction to Statistics" by Wolfgang Karl Härdle, Sigbert Klinke, and Bernd Rönz (2015) <doi:10.1007/978-3-319-17704-5>.
Author: Sigbert Klinke [aut, cre]
Maintainer: Sigbert Klinke <sigbert@hu-berlin.de>

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Package RcmdrPlugin.EZR updated to version 1.60 with previous version 1.56 dated 2022-09-01

Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10918-6, Nankodo, ISBN: 978-4-524-26158-1, Ohmsha, ISBN: 978-4-274-22632-8), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below. This report has been cited in more than 3,000 scientific articles.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>

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Package rlibkriging (with last version 0.7-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-09-22 0.7-0

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Package rimu updated to version 0.6 with previous version 0.5 dated 2022-08-16

Title: Responses in Multiplex
Description: Tools for manipulating, exploring, and visualising multiple-response data, including scored or ranked responses. Conversions to and from factors, lists, strings, matrices; reordering, lumping, flattening; set operations; tables; frequency and co-occurrence plots.
Author: Thomas Lumley [aut, cre], Annie Cohen [ctb]
Maintainer: Thomas Lumley <t.lumley@auckland.ac.nz>

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Package proxyC updated to version 0.3.3 with previous version 0.3.2 dated 2022-09-05

Title: Computes Proximity in Large Sparse Matrices
Description: Computes proximity between rows or columns of large matrices efficiently in C++. Functions are optimised for large sparse matrices using the Armadillo and Intel TBB libraries. Among several built-in similarity/distance measures, computation of correlation, cosine similarity and Euclidean distance is particularly fast.
Author: Kohei Watanabe [cre, aut, cph] , Robrecht Cannoodt [aut]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>

Diff between proxyC versions 0.3.2 dated 2022-09-05 and 0.3.3 dated 2022-10-06

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