Title: Feature Selection and Ranking via Simultaneous Perturbation
Stochastic Approximation
Description: An implementation of feature selection, weighting and ranking via simultaneous perturbation
stochastic approximation (SPSA). The SPSA-FSR algorithm searches for a locally optimal set of
features that yield the best predictive performance using some error measures such as mean
squared error (for regression problems) and accuracy rate (for classification problems).
Author: David Akman [aut, cre],
Babak Abbasi [aut, ctb],
Yong Kai Wong [aut, ctb],
Guo Feng Anders Yeo [aut, ctb],
Zeren D. Yenice [ctb]
Maintainer: David Akman <david.v.akman@gmail.com>
Diff between spFSR versions 2.0.1 dated 2022-10-29 and 2.0.2 dated 2022-11-07
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- NAMESPACE | 1 + R/spFSR.default.R | 2 ++ R/spsaKernel.R | 15 ++++++++------- 5 files changed, 21 insertions(+), 16 deletions(-)
Title: Lyrics and Song Data for Taylor Swift's Discography
Description: A comprehensive resource for data on Taylor Swift songs. Data is
included for all officially released studio albums, extended plays (EPs),
and individual singles are included. Data comes from
'Genius' (lyrics) and 'Spotify' (song characteristics). Additional functions
are included for easily creating data visualizations with color palettes
inspired by Taylor Swift's album covers.
Author: W. Jake Thompson [aut, cre, cph]
Maintainer: W. Jake Thompson <wjakethompson@gmail.com>
Diff between taylor versions 1.0.0 dated 2021-12-14 and 2.0.0 dated 2022-11-07
taylor-1.0.0/taylor/man/taylor_album_songs.Rd |only taylor-1.0.0/taylor/man/taylor_all_songs.Rd |only taylor-1.0.0/taylor/tests/testthat/test-print-color-palette-tibble.txt |only taylor-1.0.0/taylor/tests/testthat/test-print-color-palette.txt |only taylor-1.0.0/taylor/tests/testthat/test-print-palette-names.txt |only taylor-2.0.0/taylor/DESCRIPTION | 8 taylor-2.0.0/taylor/MD5 | 110 taylor-2.0.0/taylor/NEWS.md | 41 taylor-2.0.0/taylor/R/data-checks.R | 2 taylor-2.0.0/taylor/R/data.R | 100 taylor-2.0.0/taylor/R/taylor-album-palettes.R | 23 taylor-2.0.0/taylor/README.md | 114 taylor-2.0.0/taylor/data/taylor_album_songs.rda |binary taylor-2.0.0/taylor/data/taylor_albums.rda |binary taylor-2.0.0/taylor/data/taylor_all_songs.rda |binary taylor-2.0.0/taylor/inst/WORDLIST | 5 taylor-2.0.0/taylor/inst/album-covers/midnights.jpeg |only taylor-2.0.0/taylor/man/album_levels.Rd | 2 taylor-2.0.0/taylor/man/album_palettes.Rd | 4 taylor-2.0.0/taylor/man/figures/logo.png |binary taylor-2.0.0/taylor/man/scale_taylor.Rd | 10 taylor-2.0.0/taylor/man/taylor_albums.Rd | 5 taylor-2.0.0/taylor/man/taylor_songs.Rd |only taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/albums-blank-bad-label.svg | 40 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/albums-correct-factor.svg | 204 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/albums-no-factor.svg | 204 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/albums-random-factor.svg | 204 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/albums-reverse-factor.svg | 204 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/albums-specified-bad-label.svg | 42 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/fearless-color-b.svg | 554 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/fearless-color-c.svg | 2000 - taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/fearless-color-d.svg | 330 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/fearless-fill-b.svg |11258 +++++----- taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/fearless-fill-c.svg | 520 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/fearless-fill-d.svg | 28 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/lover-color-b.svg | 554 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/lover-color-c.svg | 2002 - taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/lover-color-d.svg | 468 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/lover-fill-b.svg |11258 +++++----- taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/lover-fill-c.svg | 522 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/lover-fill-d.svg | 30 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/midnights-color-b.svg |only taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/midnights-color-c.svg |only taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/midnights-color-d.svg |only taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/midnights-fill-b.svg |only taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/midnights-fill-c.svg |only taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/midnights-fill-d.svg |only taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/red-tv-color-b.svg | 554 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/red-tv-color-c.svg | 2002 - taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/red-tv-color-d.svg | 468 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/red-tv-fill-b.svg |11258 +++++----- taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/red-tv-fill-c.svg | 522 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/red-tv-fill-d.svg | 30 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/taylor-swift-color-b.svg | 554 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/taylor-swift-color-c.svg | 1990 - taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/taylor-swift-color-d.svg | 166 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/taylor-swift-fill-b.svg |11258 +++++----- taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/taylor-swift-fill-c.svg | 518 taylor-2.0.0/taylor/tests/testthat/_snaps/ggplot2-color-scales/taylor-swift-fill-d.svg | 26 taylor-2.0.0/taylor/tests/testthat/_snaps/palette.md |only taylor-2.0.0/taylor/tests/testthat/test-data.R | 4 taylor-2.0.0/taylor/tests/testthat/test-ggplot2-color-scales.R | 36 taylor-2.0.0/taylor/tests/testthat/test-palette.R | 6 63 files changed, 30178 insertions(+), 30060 deletions(-)
Title: Bayesian Multidimensional Scaling and Choice of Dimension
Description: Bayesian approach to multidimensional scaling. The package consists of implementations of the methods of Oh and Raftery (2001) <doi:10.1198/016214501753208690>.
Author: Man-Suk Oh [aut, cre],
Eun-Kyung Lee [aut]
Maintainer: Man-Suk Oh <msoh@ewha.ac.kr>
Diff between bayMDS versions 1.6 dated 2021-12-16 and 2.0 dated 2022-11-07
DESCRIPTION | 13 ++++++------- MD5 | 18 +++++++++--------- R/MDSIC.R | 6 ++++-- R/checkDIST.R | 2 +- R/plotDelDist.R | 2 +- R/plotObj.R | 2 +- R/plotTrace.R | 2 +- man/plotDelDist.Rd | 2 +- man/plotObj.Rd | 2 +- man/plotTrace.Rd | 2 +- 10 files changed, 26 insertions(+), 25 deletions(-)
Title: A Traceability Focused Grammar of Clinical Data Summary
Description: A traceability focused tool created to simplify the data manipulation necessary to create clinical summaries.
Author: Eli Miller [aut] ,
Mike Stackhouse [aut, cre] ,
Ashley Tarasiewicz [aut],
Nathan Kosiba [aut] ,
Atorus Research LLC [cph]
Maintainer: Mike Stackhouse <mike.stackhouse@atorusresearch.com>
Diff between Tplyr versions 1.0.1 dated 2022-10-17 and 1.0.2 dated 2022-11-07
DESCRIPTION | 6 - MD5 | 82 +++++++++---------- NEWS.md | 4 R/count.R | 14 ++- R/format.R | 2 R/table.R | 2 README.md | 66 ++++++++------- inst/doc/Tplyr.Rmd | 52 ++++++------ inst/doc/Tplyr.html | 171 +++++++++++++++++++++-------------------- inst/doc/count.Rmd | 4 inst/doc/count.html | 30 +++---- inst/doc/custom-metadata.Rmd | 20 ++-- inst/doc/custom-metadata.html | 81 ++++++++++--------- inst/doc/denom.Rmd | 14 +-- inst/doc/denom.html | 164 ++++++++++++++++++++------------------- inst/doc/desc.R | 2 inst/doc/desc.Rmd | 38 ++++----- inst/doc/desc.html | 113 +++++++++++++-------------- inst/doc/layer_templates.Rmd | 10 +- inst/doc/layer_templates.html | 30 +++---- inst/doc/metadata.Rmd | 10 +- inst/doc/metadata.html | 57 ++++++------- inst/doc/options.Rmd | 36 ++++---- inst/doc/options.html | 130 ++++++++++++++++--------------- inst/doc/shift.Rmd | 2 inst/doc/shift.html | 5 - inst/doc/table.Rmd | 20 ++-- inst/doc/table.html | 71 ++++++++--------- man/f_str.Rd | 2 man/tplyr_table.Rd | 2 tests/testthat/_snaps/count.md | 121 +++++++++++++++++++++++++++++ tests/testthat/test-count.R | 18 ++++ vignettes/Tplyr.Rmd | 52 ++++++------ vignettes/count.Rmd | 4 vignettes/custom-metadata.Rmd | 20 ++-- vignettes/denom.Rmd | 14 +-- vignettes/desc.Rmd | 38 ++++----- vignettes/layer_templates.Rmd | 10 +- vignettes/metadata.Rmd | 10 +- vignettes/options.Rmd | 36 ++++---- vignettes/shift.Rmd | 2 vignettes/table.Rmd | 20 ++-- 42 files changed, 886 insertions(+), 699 deletions(-)
Title: Non-Invasive Pretty Printing of R Code
Description: Pretty-prints R code without changing the user's formatting
intent.
Author: Kirill Mueller [aut] ,
Lorenz Walthert [cre, aut],
Indrajeet Patil [ctb]
Maintainer: Lorenz Walthert <lorenz.walthert@icloud.com>
Diff between styler versions 1.8.0 dated 2022-10-22 and 1.8.1 dated 2022-11-07
styler-1.8.0/styler/man/is_tilde_expr.Rd |only styler-1.8.1/styler/DESCRIPTION | 8 styler-1.8.1/styler/MD5 | 79 +++--- styler-1.8.1/styler/NAMESPACE | 15 + styler-1.8.1/styler/NEWS.md | 30 ++ styler-1.8.1/styler/R/detect-alignment.R | 2 styler-1.8.1/styler/R/expr-is.R | 102 ++++++-- styler-1.8.1/styler/R/initialize.R | 2 styler-1.8.1/styler/R/nest.R | 13 - styler-1.8.1/styler/R/nested-to-tree.R | 2 styler-1.8.1/styler/R/rules-indention.R | 2 styler-1.8.1/styler/R/rules-line-breaks.R | 6 styler-1.8.1/styler/R/rules-spaces.R | 27 +- styler-1.8.1/styler/R/rules-tokens.R | 6 styler-1.8.1/styler/R/style-guides.R | 12 - styler-1.8.1/styler/R/ui-caching.R | 13 - styler-1.8.1/styler/R/utils-cache.R | 26 +- styler-1.8.1/styler/R/utils-navigate-nest.R | 14 - styler-1.8.1/styler/inst/doc/caching.html | 111 ++++----- styler-1.8.1/styler/inst/doc/customizing_styler.html | 117 ++++------ styler-1.8.1/styler/inst/doc/detect-alignment.html | 111 ++++----- styler-1.8.1/styler/inst/doc/distribute_custom_style_guides.html | 111 ++++----- styler-1.8.1/styler/inst/doc/remove_rules.html | 115 ++++----- styler-1.8.1/styler/inst/doc/strict.html | 111 ++++----- styler-1.8.1/styler/inst/doc/styler.html | 111 ++++----- styler-1.8.1/styler/inst/doc/third-party-integrations.html | 14 - styler-1.8.1/styler/man/caching.Rd | 2 styler-1.8.1/styler/man/compute_parse_data_nested.Rd | 15 + styler-1.8.1/styler/man/create_node_from_nested_root.Rd | 2 styler-1.8.1/styler/man/default_style_guide_attributes.Rd | 2 styler-1.8.1/styler/man/next_non_comment.Rd | 15 + styler-1.8.1/styler/man/next_terminal.Rd | 2 styler-1.8.1/styler/man/pd_is.Rd | 96 +++++++- styler-1.8.1/styler/man/scope_normalize.Rd | 11 styler-1.8.1/styler/man/set_space_between_eq_sub_and_comma.Rd | 4 styler-1.8.1/styler/man/tidyverse_style.Rd | 2 styler-1.8.1/styler/man/token_is_on_aligned_line.Rd | 2 styler-1.8.1/styler/tests/testthat.R | 16 - styler-1.8.1/styler/tests/testthat/test-cache-interaction-roxygen-code-examples.R | 8 styler-1.8.1/styler/tests/testthat/test-transformers-drop.R | 2 styler-1.8.1/styler/tests/testthat/tests-cache-require-serial.R | 2 41 files changed, 774 insertions(+), 567 deletions(-)
Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.
Author: Andrew Butler [ctb] ,
Saket Choudhary [ctb] ,
Charlotte Darby [ctb] ,
Jeff Farrell [ctb],
Christoph Hafemeister [ctb] ,
Yuhan Hao [ctb] ,
Paul Hoffman [aut, cre] ,
Jaison Jain [ctb] ,
Efthymia Papalexi [ctb] ,
Patrick Roelli [ctb],
Rahul Satija [ctb] [...truncated...]
Maintainer: Paul Hoffman <seurat@nygenome.org>
Diff between Seurat versions 4.2.0 dated 2022-09-21 and 4.2.1 dated 2022-11-07
DESCRIPTION | 12 ++++++------ MD5 | 22 +++++++++++----------- NAMESPACE | 2 +- NEWS.md | 6 ++++++ R/differential_expression.R | 8 +++++++- R/preprocessing.R | 2 +- R/reexports.R | 8 ++++++++ R/visualization.R | 4 ++++ R/zzz.R | 1 + README.md | 2 +- build/partial.rdb |binary tests/testthat/test_differential_expression.R | 16 ++++++++-------- 12 files changed, 54 insertions(+), 29 deletions(-)
Title: Risk Tool Library - Trading, Risk, 'Analytics' for Commodities
Description: A toolkit for Commodities 'analytics', risk management and
trading professionals. Includes functions for API calls to
'Morningstar Commodities' and 'Genscape'.
Author: Philippe Cote [aut, cre],
Nima Safaian [aut]
Maintainer: Philippe Cote <pcote@ualberta.ca>
Diff between RTL versions 1.2.0 dated 2022-06-17 and 1.3.0 dated 2022-11-07
RTL-1.2.0/RTL/data/cancrudeassayssum.rda |only RTL-1.2.0/RTL/man/cancrudeassayssum.Rd |only RTL-1.3.0/RTL/DESCRIPTION | 12 RTL-1.3.0/RTL/MD5 | 88 ++++-- RTL-1.3.0/RTL/NAMESPACE | 2 RTL-1.3.0/RTL/NEWS.md | 28 +- RTL-1.3.0/RTL/R/chart_eia_steo.R | 224 ++++++++--------- RTL-1.3.0/RTL/R/data.R | 367 ++++++++++++++++------------- RTL-1.3.0/RTL/R/efficientFrontier.R | 2 RTL-1.3.0/RTL/R/eia2tidy.R | 50 +-- RTL-1.3.0/RTL/R/simGBM.R | 3 RTL-1.3.0/RTL/R/simMultivariates.R | 2 RTL-1.3.0/RTL/R/tradeStrategyDY.R |only RTL-1.3.0/RTL/R/tradeStrategySMA.R |only RTL-1.3.0/RTL/README.md | 5 RTL-1.3.0/RTL/data/CLc1.rda |only RTL-1.3.0/RTL/data/CLc1c2.rda |only RTL-1.3.0/RTL/data/CLc2.rda |only RTL-1.3.0/RTL/data/cancrudeassays.rda |binary RTL-1.3.0/RTL/data/crudes.rda |binary RTL-1.3.0/RTL/data/dflong.rda |binary RTL-1.3.0/RTL/data/dfwide.rda |binary RTL-1.3.0/RTL/data/eiaStocks.rda |binary RTL-1.3.0/RTL/data/eiaStorageCap.rda |binary RTL-1.3.0/RTL/data/eurodollar.rda |binary RTL-1.3.0/RTL/data/expiry_table.rda |binary RTL-1.3.0/RTL/data/fizdiffs.rda |binary RTL-1.3.0/RTL/data/futuresMonths.rda |only RTL-1.3.0/RTL/data/futuresSpecs.rda |only RTL-1.3.0/RTL/data/fxfwd.rda |binary RTL-1.3.0/RTL/data/holidaysOil.rda |binary RTL-1.3.0/RTL/data/ohlc.rda |only RTL-1.3.0/RTL/data/planets.rda |binary RTL-1.3.0/RTL/data/ry.rda |only RTL-1.3.0/RTL/data/spot2futConvergence.rda |binary RTL-1.3.0/RTL/data/spot2futCurve.rda |binary RTL-1.3.0/RTL/data/spy.rda |binary RTL-1.3.0/RTL/data/steo.rda |only RTL-1.3.0/RTL/data/tsQuotes.rda |binary RTL-1.3.0/RTL/data/usSwapCurves.rda |binary RTL-1.3.0/RTL/data/usSwapCurvesPar.rda |binary RTL-1.3.0/RTL/data/uso.rda |only RTL-1.3.0/RTL/data/wtiSwap.rda |binary RTL-1.3.0/RTL/inst/WORDLIST | 9 RTL-1.3.0/RTL/man/CLc1.Rd |only RTL-1.3.0/RTL/man/CLc1c2.Rd |only RTL-1.3.0/RTL/man/CLc2.Rd |only RTL-1.3.0/RTL/man/cancrudeassays.Rd | 2 RTL-1.3.0/RTL/man/eia2tidy.Rd | 5 RTL-1.3.0/RTL/man/futuresMonths.Rd |only RTL-1.3.0/RTL/man/futuresSpecs.Rd |only RTL-1.3.0/RTL/man/ohlc.Rd |only RTL-1.3.0/RTL/man/ry.Rd |only RTL-1.3.0/RTL/man/steo.Rd |only RTL-1.3.0/RTL/man/tradeStrategyDY.Rd |only RTL-1.3.0/RTL/man/tradeStrategySMA.Rd |only RTL-1.3.0/RTL/man/uso.Rd |only 57 files changed, 443 insertions(+), 356 deletions(-)
Title: Tests for Rotational Symmetry on the Hypersphere
Description: Implementation of the tests for rotational symmetry on the
hypersphere proposed in García-Portugués, Paindaveine and Verdebout (2020)
<doi:10.1080/01621459.2019.1665527>. The package also implements the
proposed distributions on the hypersphere, based on the tangent-normal
decomposition, and allows for the replication of the data application
considered in the paper.
Author: Eduardo Garcia-Portugues [aut, cre]
,
Davy Paindaveine [aut],
Thomas Verdebout [aut]
Maintainer: Eduardo Garcia-Portugues <edgarcia@est-econ.uc3m.es>
Diff between rotasym versions 1.1.3 dated 2021-10-18 and 1.1.4 dated 2022-11-07
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/data.R | 2 +- R/tests.R | 6 +++--- build/partial.rdb |binary man/sunspots_births.Rd | 2 +- src/vMF.cpp | 2 +- 8 files changed, 23 insertions(+), 18 deletions(-)
Title: Diagnostics for Pharmacometric Models
Description: Diagnostics for non-linear mixed-effects (population)
models from 'NONMEM' <https://www.iconplc.com/innovation/nonmem/>.
'xpose' facilitates data import, creation of numerical run summary
and provide 'ggplot2'-based graphics for data exploration and model
diagnostics.
Author: Benjamin Guiastrennec [aut, cre, cph],
Andrew C. Hooker [aut, cph],
Sebastian Ueckert [aut, cph],
Mike K. Smith [ctb],
Mats O. Karlsson [aut, cph]
Maintainer: Benjamin Guiastrennec <guiastrennec@gmail.com>
Diff between xpose versions 0.4.13 dated 2021-06-30 and 0.4.14 dated 2022-11-07
DESCRIPTION | 13 MD5 | 92 ++--- NAMESPACE | 1 NEWS.md | 8 R/plot_amt.R | 6 R/plot_distribution.R | 18 - R/plot_gof.R | 12 R/plot_individuals.R | 14 R/plot_minimization.R | 8 R/plot_qq.R | 18 - R/plot_residuals.R | 42 +- R/plot_spaghetti.R | 24 - R/plot_vpc.R | 42 +- R/print_xpose_plot.R | 7 R/read_nm_files.R | 5 R/read_nm_model.R | 5 R/read_nm_tables.R | 5 R/themes_gg.R | 36 ++ R/update_themes.R | 1 R/xplot_distrib.R | 2 R/xplot_helpers.R | 2 R/xplot_scatter.R | 4 R/xpose.R | 3 R/zzz.R | 2 README.md | 19 - build/vignette.rds |binary data/xpdb_ex_pk.rda |binary inst/doc/access_xpdb_data.html | 438 ++++++++++++++++++++------ inst/doc/customize_plots.html | 491 +++++++++++++++++++++++------- inst/doc/import_model_outputs.html | 369 ++++++++++++++++++---- inst/doc/introduction.html | 368 ++++++++++++++++++---- inst/doc/multiple_pages.html | 371 ++++++++++++++++++---- inst/doc/vpc.html | 424 ++++++++++++++++++++----- man/figures/readme_example_figure_3-1.png |binary man/figures/readme_example_figure_4-1.png |binary man/ind_plots.Rd | 3 man/minimization_plots.Rd | 6 man/xpose-package.Rd | 7 tests/testthat/data/ctrl_psn_vpc.RData |binary tests/testthat/data/ctrl_special.RData |binary tests/testthat/test-print_xpose_plots.R | 10 tests/testthat/test-update_themes.R | 16 tests/testthat/test-xplot_helpers.R | 10 tests/testthat/test-xpose-default-plots.R | 18 - tests/testthat/test-xpose_data.R | 2 tests/testthat/test-xpose_geom.R | 28 + tests/testthat/test-xpose_save.R | 8 47 files changed, 2241 insertions(+), 717 deletions(-)
Title: Presentation Ninja
Description: Create HTML5 slides with R Markdown and the JavaScript library
'remark.js' (<https://remarkjs.com>).
Author: Yihui Xie [aut, cre] ,
Alessandro Gasparini [ctb] ,
Benjie Gillam [ctb],
Claus Thorn Ekstroem [ctb],
Daniel Anderson [ctb],
Dawei Lang [ctb],
Deo Salil [ctb],
Emi Tanaka [ctb],
Garrick Aden-Buie [ctb] ,
Inaki Ucar [ctb] ,
John Little [ctb],
Joselyn Ch [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xaringan versions 0.26 dated 2022-08-09 and 0.27 dated 2022-11-07
DESCRIPTION | 8 - MD5 | 16 +-- NAMESPACE | 1 R/render.R | 10 +- build/vignette.rds |binary inst/examples/ki-demo.Rmd | 29 ++---- inst/rmarkdown/templates/xaringan/resources/ki-fonts.css | 13 +- inst/rmarkdown/templates/xaringan/resources/ki.css | 72 +++++++++++---- man/inf_mr.Rd | 9 + 9 files changed, 101 insertions(+), 57 deletions(-)
Title: Itrax Data Analysis Tools
Description: Parse, trim, join, visualise and analyse data from Itrax sediment core multi-parameter
scanners manufactured by Cox Analytical Systems, Sweden. Functions are provided for parsing
XRF-peak area files, line-scan optical images, and radiographic images, alongside accompanying metadata.
A variety of data wrangling tasks like trimming, joining and reducing XRF-peak area data are simplified.
Multivariate methods are implemented with appropriate data transformation.
Author: Thomas Bishop
Maintainer: Thomas Bishop <tombishopemail@gmail.com>
Diff between itraxR versions 1.4 dated 2021-08-17 and 1.8 dated 2022-11-07
itraxR-1.4/itraxR/R/itrax_image.r |only itraxR-1.4/itraxR/R/itrax_radiograph.r |only itraxR-1.4/itraxR/R/itrax_section.r |only itraxR-1.8/itraxR/DESCRIPTION | 20 ++--- itraxR-1.8/itraxR/MD5 | 40 ++++++----- itraxR-1.8/itraxR/NAMESPACE | 17 +++- itraxR-1.8/itraxR/R/itrax_correlation.r | 32 +++----- itraxR-1.8/itraxR/R/itrax_image.R |only itraxR-1.8/itraxR/R/itrax_import.r | 107 +++++++++++++----------------- itraxR-1.8/itraxR/R/itrax_join.r | 3 itraxR-1.8/itraxR/R/itrax_munsell.R |only itraxR-1.8/itraxR/R/itrax_ordination.r | 61 +++++------------ itraxR-1.8/itraxR/R/itrax_radiograph.R |only itraxR-1.8/itraxR/R/itrax_restspectra.r | 23 ++---- itraxR-1.8/itraxR/R/itrax_section.R |only itraxR-1.8/itraxR/R/itrax_spectra.R | 18 ++--- itraxR-1.8/itraxR/R/multivariate_import.R | 20 +++-- itraxR-1.8/itraxR/R/uid_labeller.R |only itraxR-1.8/itraxR/man/itrax_image.Rd | 2 itraxR-1.8/itraxR/man/itrax_import.Rd | 80 +++++++++++----------- itraxR-1.8/itraxR/man/itrax_join.Rd | 40 +++++------ itraxR-1.8/itraxR/man/itrax_meta.Rd | 48 ++++++------- itraxR-1.8/itraxR/man/itrax_munsell.Rd |only itraxR-1.8/itraxR/man/itrax_radiograph.Rd | 2 itraxR-1.8/itraxR/man/itrax_section.Rd | 11 +-- itraxR-1.8/itraxR/man/uid_labeller.Rd |only 26 files changed, 251 insertions(+), 273 deletions(-)
Title: 'grid' Pattern Grobs
Description: Provides 'grid' grobs that fill in a user-defined area with various patterns. Includes enhanced versions of the geometric and image-based patterns originally contained in the 'ggpattern' package as well as original 'pch', 'polygon_tiling', 'regular_polygon', 'rose', 'text', 'wave', and 'weave' patterns plus support for custom user-defined patterns.
Author: Mike FC [aut] ,
Trevor L Davis [aut, cre] ,
Thomas Lin Pedersen [ctb] copied from ggplot2)
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between gridpattern versions 1.0.1 dated 2022-08-16 and 1.0.2 dated 2022-11-07
DESCRIPTION | 6 MD5 | 144 +-- NEWS.md | 9 R/gridpattern-package.R | 1 R/utils-polygon_df.R | 26 inst/doc/developing-patterns.html | 210 +++++ inst/doc/tiling.html | 226 +++++ man/figures/README-circle-1.png |binary man/figures/README-ggpattern-1.png |binary man/figures/README-hex_ggpattern-1.png |binary man/figures/README-piecepackr-1.png |binary man/figures/README-rhombitrihexagonal-1.png |binary man/figures/README-rose-1.png |binary man/figures/README-text-1.png |binary man/figures/README-truncated_hexagonal-1.png |binary man/figures/README-wave-1.png |binary man/figures/README-weave-1.png |binary man/gridpattern-package.Rd | 1 tests/figs/array/placeholder.png |binary tests/testthat/_snaps/geometry/circle.svg | 68 - tests/testthat/_snaps/geometry/crosshatch.svg | 88 +- tests/testthat/_snaps/geometry/default.svg | 62 - tests/testthat/_snaps/geometry/eight-sided-star.svg | 100 +- tests/testthat/_snaps/geometry/hexagon.svg | 200 ++-- tests/testthat/_snaps/geometry/regular-polygon.svg | 64 - tests/testthat/_snaps/geometry/square.svg | 184 ++-- tests/testthat/_snaps/geometry/stripe-gpar.svg | 14 tests/testthat/_snaps/geometry/stripe.svg | 38 tests/testthat/_snaps/geometry/two-id.svg | 60 - tests/testthat/_snaps/geometry/wave-sine.svg | 30 tests/testthat/_snaps/geometry/wave-triangle.svg | 34 tests/testthat/_snaps/geometry/weave.svg | 526 ++++++------- tests/testthat/_snaps/pch/col-fill.svg | 12 tests/testthat/_snaps/pch/compound.svg | 18 tests/testthat/_snaps/pch/fill-fill.svg | 8 tests/testthat/_snaps/pch/simple.svg | 14 tests/testthat/_snaps/tiling/12-12-4.svg | 40 tests/testthat/_snaps/tiling/12-3-12-3.svg | 40 tests/testthat/_snaps/tiling/18-18-3.svg | 56 - tests/testthat/_snaps/tiling/2-2-2-2.svg | 152 +-- tests/testthat/_snaps/tiling/2-3-12.svg | 76 - tests/testthat/_snaps/tiling/3-3-3-12-3-3-12.svg | 132 +-- tests/testthat/_snaps/tiling/3-3-3-3-alt.svg | 66 - tests/testthat/_snaps/tiling/3-3-3-3.svg | 74 - tests/testthat/_snaps/tiling/3-3-8-3-4-3-8.svg | 108 +- tests/testthat/_snaps/tiling/3-3-8-4-8.svg | 176 ++-- tests/testthat/_snaps/tiling/3-4-6-3-12.svg | 158 +-- tests/testthat/_snaps/tiling/3-4-8-3-8.svg | 84 +- tests/testthat/_snaps/tiling/3-6-6.svg | 88 +- tests/testthat/_snaps/tiling/4-2-4-2.svg | 120 +- tests/testthat/_snaps/tiling/4-4-4.svg | 72 - tests/testthat/_snaps/tiling/4-6-4-6-4-6.svg | 68 - tests/testthat/_snaps/tiling/4-6-4-6.svg | 40 tests/testthat/_snaps/tiling/4-8-4-8.svg | 68 - tests/testthat/_snaps/tiling/6-6-6-6.svg | 48 - tests/testthat/_snaps/tiling/8-4-8-4.svg | 40 tests/testthat/_snaps/tiling/9-3-9-3.svg | 72 - tests/testthat/_snaps/tiling/elongated-triangular.svg | 66 - tests/testthat/_snaps/tiling/herringbone.svg | 122 +-- tests/testthat/_snaps/tiling/hexagonal-tiling.svg | 56 - tests/testthat/_snaps/tiling/pythagorean.svg | 48 - tests/testthat/_snaps/tiling/rhombille.svg | 138 +-- tests/testthat/_snaps/tiling/rhombitrihexagonal-tiling.svg | 98 +- tests/testthat/_snaps/tiling/snub-square-tiling.svg | 80 - tests/testthat/_snaps/tiling/snub-trihex-tiling.svg | 120 +- tests/testthat/_snaps/tiling/square-tiling.svg | 68 - tests/testthat/_snaps/tiling/tetrakis-square.svg | 352 ++++---- tests/testthat/_snaps/tiling/triangular-tiling.svg | 52 - tests/testthat/_snaps/tiling/trihexagonal-tiling.svg | 56 - tests/testthat/_snaps/tiling/trunc-hex-tiling.svg | 56 - tests/testthat/_snaps/tiling/trunc-square-tiling.svg | 48 - tests/testthat/_snaps/tiling/trunc-trihex-tiling.svg | 82 +- tests/testthat/test_array.R | 14 73 files changed, 2897 insertions(+), 2480 deletions(-)
Title: Total Mediation Effect Size Measure (R-Squared Measure) under
Moderate or High-Dimensional Mediator Settings
Description: An implementation of calculating the R-squared measure as a total mediation effect size measure and its confidence interval for moderate- or high-dimensional mediator model. It gives an option to filter out non-mediators using variable selection method. The original R package is directly related to the paper "Estimation of mediation effect for high-dimensional omics mediators with application to the Framingham Heart Study" with <doi:10.1101/774877>. The new version contains a choice of using cross-fitting, which is computationally faster.
Author: Tianzhong Yang [aut, cre]
Maintainer: Tianzhong Yang <yang3704@umn.edu>
Diff between RsqMed versions 0.1.7.1 dated 2020-02-02 and 0.2.1.0 dated 2022-11-07
DESCRIPTION | 19 ++-- MD5 | 16 ++- NAMESPACE | 1 R/CrossFittedR2.R |only R/RsqMed.R | 209 +++++++++++++++++++++++++++++++------------------- R/RsqMed_sd.R | 43 +++++----- data/example.rda |binary man/CF_Rsq.measure.Rd |only man/CI.Rsq.measure.Rd | 32 +++++-- man/Rsq.measure.Rd | 49 ++++++----- 10 files changed, 226 insertions(+), 143 deletions(-)
Title: Fast R and C++ Access to NIfTI Images
Description: Provides very fast read and write access to images stored in the
NIfTI-1, NIfTI-2 and ANALYZE-7.5 formats, with seamless synchronisation
of in-memory image objects between compiled C and interpreted R code. Also
provides a simple image viewer, and a C/C++ API that can be used by other
packages. Not to be confused with 'RNiftyReg', which performs image
registration and applies spatial transformations.
Author: Jon Clayden [cre, aut] ,
Bob Cox [aut],
Mark Jenkinson [aut],
Matt Hall [ctb],
Rick Reynolds [ctb],
Kate Fissell [ctb],
Jean-loup Gailly [cph],
Mark Adler [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between RNifti versions 1.4.2 dated 2022-10-31 and 1.4.3 dated 2022-11-07
DESCRIPTION | 8 - MD5 | 242 ++++++++++++++++++++++++++++++++++++++++++++++- NEWS | 6 + inst/doxygen |only inst/include/RNiftiAPI.h | 2 5 files changed, 250 insertions(+), 8 deletions(-)
Title: Data Structures for Single Cell Data
Description: Defines S4 classes for single-cell genomic data and associated
information, such as dimensionality reduction embeddings, nearest-neighbor
graphs, and spatially-resolved coordinates. Provides data access methods and
R-native hooks to ensure the Seurat object is familiar to other R users. See
Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,
Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,
and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031> for
more details.
Author: Rahul Satija [aut] ,
Andrew Butler [aut] ,
Paul Hoffman [aut, cre] ,
Tim Stuart [aut] ,
Jeff Farrell [ctb],
Shiwei Zheng [ctb] ,
Christoph Hafemeister [ctb] ,
Patrick Roelli [ctb],
Yuhan Hao [ctb]
Maintainer: Paul Hoffman <seurat@nygenome.org>
Diff between SeuratObject versions 4.1.2 dated 2022-09-20 and 4.1.3 dated 2022-11-07
DESCRIPTION | 18 +++++++++--------- MD5 | 34 +++++++++++++++++----------------- NAMESPACE | 1 - NEWS.md | 8 ++++++++ R/centroids.R | 6 +++++- R/fov.R | 35 ++++++++++++++++++++++------------- R/segmentation.R | 8 +++++++- R/seurat.R | 21 +++++++++++++++------ R/utils.R | 13 ++++++++++--- R/zzz.R | 5 ----- build/partial.rdb |binary man/Assay-methods.Rd | 30 +++++++++++++++--------------- man/DimReduc-methods.Rd | 22 +++++++++++----------- man/JackStrawData-methods.Rd | 10 +++++----- man/Neighbor-methods.Rd | 6 +++--- man/Seurat-methods.Rd | 38 +++++++++++++++++++------------------- man/SeuratCommand-methods.Rd | 12 ++++++------ man/SpatialImage-methods.Rd | 30 +++++++++++++++--------------- 18 files changed, 167 insertions(+), 130 deletions(-)
Title: Metabolomics Data Analysis Functions
Description: A collection of functions for processing and analyzing metabolite data.
The namesake function mrbin() converts 1D
or 2D Nuclear Magnetic Resonance data into a matrix of values suitable for further data analysis and
performs basic processing steps in a reproducible way. Negative values, a
common issue in such data, can be replaced by positive values (<doi:10.1021/acs.jproteome.0c00684>). All used
parameters are stored in a readable text file and can be restored from that
file to enable exact reproduction of the data at a later time. The function fia() ranks features according
to their impact on classifier models, especially artificial neural network models.
Author: Matthias Klein [aut, cre]
Maintainer: Matthias Klein <matthias.s.klein@gmx.net>
Diff between mrbin versions 1.7.0 dated 2022-10-30 and 1.7.1 dated 2022-11-07
DESCRIPTION | 6 MD5 | 24 - NAMESPACE | 4 NEWS.md | 11 R/mrbin.R | 1077 +++++++++++++++++++++++++++++---------------- inst/doc/mrbin.R | 83 ++- inst/doc/mrbin.Rnw | 47 + inst/doc/mrbin.pdf |binary man/PQNScaling.Rd | 2 man/annotatemrbin.Rd | 20 man/dilutionCorrection.Rd |only man/removeSpectrum.Rd |only man/setDilutionFactors.Rd |only man/unitVarianceScaling.Rd |only vignettes/mrbin.Rnw | 47 + 15 files changed, 891 insertions(+), 430 deletions(-)
Title: Analyzing Wildlife Data with Detection Error
Description: Models for analyzing site occupancy and count data models
with detection error, including single-visit based models,
conditional distance sampling and time-removal models.
Package development was supported by the
Alberta Biodiversity Monitoring Institute
and the Boreal Avian Modelling Project.
Author: Peter Solymos [cre, aut], Monica Moreno [aut], Subhash R. Lele [aut]
Maintainer: Peter Solymos <solymos@ualberta.ca>
Diff between detect versions 0.4-4 dated 2020-08-12 and 0.4-5 dated 2022-11-07
DESCRIPTION | 12 ++++++------ MD5 | 13 +++++++------ R/cmulti.fit.R | 1 + inst |only man/AUC.Rd | 2 +- man/detect-package.Rd | 4 +--- man/internals.Rd | 4 +--- man/svabu.Rd | 2 +- 8 files changed, 18 insertions(+), 20 deletions(-)
Title: Accessing Statistics Canada Data Table and Vectors
Description: Searches for, accesses, and retrieves new-format and old-format Statistics Canada data
tables, as well as individual vectors, as tidy data frames. This package deals with encoding issues, allows for
bilingual English or French language data retrieval, and bundles convenience functions
to make it easier to work with retrieved table data. Optional caching features are provided.
Author: Jens von Bergmann [cre],
Dmitry Shkolnik [aut]
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between cansim versions 0.3.12 dated 2022-07-12 and 0.3.13 dated 2022-11-07
DESCRIPTION | 8 - MD5 | 32 ++--- NEWS.md | 5 R/cansim.R | 4 R/cansim_sql.R | 10 + R/cansim_tables_list.R | 9 + R/cansim_vectors.R | 2 README.md | 4 build/vignette.rds |binary inst/doc/cansim.html | 172 ++++++++++++++--------------- inst/doc/working_with_large_tables.html | 188 ++++++++++++++++---------------- man/correspondence.Rd | 1 man/get_cansim_ndm.Rd | 2 man/list_cansim_cubes.Rd | 6 - man/list_cansim_sqlite_cached_tables.Rd | 7 + man/list_cansim_tables.Rd | 1 man/search_cansim_tables.Rd | 1 17 files changed, 240 insertions(+), 212 deletions(-)
Title: Multiple Imputation of Covariates by Substantive Model
Compatible Fully Conditional Specification
Description: Implements multiple imputation of missing covariates by
Substantive Model Compatible Fully Conditional Specification.
This is a modification of the popular FCS/chained equations
multiple imputation approach, and allows imputation of missing
covariate values from models which are compatible with the user
specified substantive model.
Author: Jonathan Bartlett [aut, cre],
Ruth Keogh [aut],
Edouard F. Bonneville [aut],
Claus Thorn Ekstroem [ctb]
Maintainer: Jonathan Bartlett <jonathan.bartlett1@lshtm.ac.uk>
Diff between smcfcs versions 1.7.0 dated 2022-06-22 and 1.7.1 dated 2022-11-07
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++---------- R/smcfcs.r | 5 ++--- R/smcfcs_parallel.r | 10 +++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/smcfcs-vignette.html | 17 ++++++++++++----- inst/doc/smcfcs_coverror-vignette.html | 17 ++++++++++++----- man/smcfcs.Rd | 3 +-- man/smcfcs.parallel.Rd | 6 +++--- tests/testthat/test_parallel.r | 18 ------------------ 11 files changed, 51 insertions(+), 57 deletions(-)
Title: Spatial Ecology Miscellaneous Methods
Description: Collection of R functions and data sets for the support of spatial ecology analyses with a focus on pre, core and post modelling analyses of species distribution, niche quantification and community assembly. Written by current and former members and collaborators of the ecospat group of Antoine Guisan, Department of Ecology and Evolution (DEE) and Institute of Earth Surface Dynamics (IDYST), University of Lausanne, Switzerland. Read Di Cola et al. (2016) <doi:10.1111/ecog.02671> for details.
Author: Olivier Broennimann [cre, aut, ctb],
Valeria Di Cola [aut, ctb],
Blaise Petitpierre [ctb],
Frank Breiner [ctb],
Daniel Scherrer [ctb],
Manuela D`Amen [ctb],
Christophe Randin [ctb],
Robin Engler [ctb],
Wim Hordijk [ctb],
Heidi Mod [ctb],
Julien Potti [...truncated...]
Maintainer: Olivier Broennimann <olivier.broennimann@unil.ch>
Diff between ecospat versions 3.3 dated 2022-06-03 and 3.4 dated 2022-11-07
ecospat-3.3/ecospat/R/ecospat.ESM.EnsembleEvaluation.R |only ecospat-3.4/ecospat/DESCRIPTION | 12 ecospat-3.4/ecospat/MD5 | 33 +- ecospat-3.4/ecospat/NAMESPACE | 7 ecospat-3.4/ecospat/NEWS | 22 + ecospat-3.4/ecospat/R/ecospat.CCV.R | 189 ++++++------- ecospat-3.4/ecospat/R/ecospat.ESM.R | 146 +++++----- ecospat-3.4/ecospat/R/ecospat.ESM.responsePlot.R | 36 +- ecospat-3.4/ecospat/R/ecospat.modelingtools.R | 6 ecospat-3.4/ecospat/R/ecospat.poolingEvaluation.R |only ecospat-3.4/ecospat/build/partial.rdb |binary ecospat-3.4/ecospat/build/vignette.rds |binary ecospat-3.4/ecospat/inst/doc/vignette_ecospat_package.R | 2 ecospat-3.4/ecospat/inst/doc/vignette_ecospat_package.Rmd | 2 ecospat-3.4/ecospat/inst/doc/vignette_ecospat_package.pdf |binary ecospat-3.4/ecospat/man/ecospat.ESM.EnsembleModeling.Rd | 2 ecospat-3.4/ecospat/man/ecospat.ESM.Modeling.Rd | 4 ecospat-3.4/ecospat/man/ecospat.poolingEvaluation.Rd |only ecospat-3.4/ecospat/vignettes/vignette_ecospat_package.Rmd | 2 19 files changed, 258 insertions(+), 205 deletions(-)
Title: Discrete Nonlinear Filtering for Stochastic Volatility Models
Description: Generates simulated paths from various financial stochastic volatility models
with jumps and applies the discrete nonlinear filter (DNF) of Kitagawa (1987) <doi:10.1080/01621459.1987.10478534> to
compute likelihood evaluations, filtering distribution estimates, and maximum likelihood parameter estimates.
The algorithm is implemented following the work of Bégin and Boudreault (2021) <doi:10.1080/10618600.2020.1840995>.
Author: Louis Arsenault-Mahjoubi [aut, cre],
Jean-Francois Begin [aut],
Mathieu Boudreault [aut]
Maintainer: Louis Arsenault-Mahjoubi <larsenau@sfu.ca>
Diff between SVDNF versions 0.1.0 dated 2022-10-11 and 0.1.1 dated 2022-11-07
SVDNF-0.1.0/SVDNF/R/DNFPlot.R |only SVDNF-0.1.0/SVDNF/man/DNF.Rd |only SVDNF-0.1.0/SVDNF/man/DNFPlot.Rd |only SVDNF-0.1.0/SVDNF/man/modelSim.Rd |only SVDNF-0.1.1/SVDNF/DESCRIPTION | 12 SVDNF-0.1.1/SVDNF/MD5 | 26 +- SVDNF-0.1.1/SVDNF/NAMESPACE | 9 SVDNF-0.1.1/SVDNF/R/DNF.R | 202 +--------------- SVDNF-0.1.1/SVDNF/R/DNFOptim.R | 320 ++++++++++---------------- SVDNF-0.1.1/SVDNF/R/dynamicsSVM.R |only SVDNF-0.1.1/SVDNF/R/gridMaker.R | 159 +++++++----- SVDNF-0.1.1/SVDNF/R/modelSim.R | 225 ++---------------- SVDNF-0.1.1/SVDNF/R/plot.SVDNF.R |only SVDNF-0.1.1/SVDNF/R/probCalculator.R | 22 - SVDNF-0.1.1/SVDNF/man/DNF.dynamicsSVM.Rd |only SVDNF-0.1.1/SVDNF/man/DNFOptim.Rd | 38 +-- SVDNF-0.1.1/SVDNF/man/dynamicsSVM.Rd |only SVDNF-0.1.1/SVDNF/man/modelSim.dynamicsSVM.Rd |only SVDNF-0.1.1/SVDNF/man/plot.SVDNF.Rd |only 19 files changed, 326 insertions(+), 687 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. The package includes methods for spectral fitting: Wilson
(2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018)
<DOI:10.1002/mrm.27605>.
Author: Martin Wilson [cre, aut] ,
Yong Wang [ctb],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 2.3.0 dated 2022-10-12 and 2.4.0 dated 2022-11-07
DESCRIPTION | 8 MD5 | 603 +- NAMESPACE | 609 +- NEWS.md | 825 +-- R/abfit.R | 2788 +++++----- R/amp_scaling.R | 546 +- R/basis_set.R | 810 +-- R/benchmark.R | 122 R/data.R | 4 R/dicom_reader.R | 300 - R/fit_display.R | 942 +-- R/fitting.R | 1704 +++--- R/gsl_functions.R | 454 - R/image_reg.R | 1100 ++-- R/interactive_plotting.R | 1002 +-- R/mol_parameters.R | 2644 ++++----- R/mrs_data_display.R | 1560 ++--- R/mrs_data_io.R | 800 +- R/mrs_data_proc.R | 8062 +++++++++++++++--------------- R/mrs_read_dicom.R | 470 - R/mrs_read_ima.R | 166 R/mrs_read_jmrui_txt.R | 84 R/mrs_read_lcm_raw.R | 94 R/mrs_read_list_data.R | 198 R/mrs_read_nifti.R | 244 R/mrs_read_paravis.R | 136 R/mrs_read_pfile.R | 412 - R/mrs_read_rda.R | 192 R/mrs_read_spar_sdat.R | 362 - R/mrs_read_twix.R | 1288 ++-- R/mrs_read_varian.R | 146 R/mrs_write_nifti.R | 174 R/pnnls.R | 134 R/precomp.R | 152 R/pulse_sequences.R | 1070 +-- R/pulse_shapes.R | 24 R/qm_simulation.R | 1000 +-- R/rats.R | 412 - R/spant.R | 386 - R/svs_batch_fit.R | 508 - R/tdsr.R | 144 R/utils.R | 1236 ++-- R/varpro.R | 502 - R/varpro_3_para.R | 448 - R/varpro_basic.R | 418 - build/vignette.rds |binary inst/CITATION | 84 inst/WORDLIST | 380 - inst/doc/abfit-baseline-opts.R | 106 inst/doc/abfit-baseline-opts.Rmd | 184 inst/doc/abfit-baseline-opts.html | 677 +- inst/doc/spant-basis-simulation.R | 86 inst/doc/spant-basis-simulation.Rmd | 148 inst/doc/spant-basis-simulation.html | 617 +- inst/doc/spant-intro.R | 108 inst/doc/spant-intro.Rmd | 186 inst/doc/spant-intro.html | 832 +-- inst/doc/spant-metabolite-simulation.R | 150 inst/doc/spant-metabolite-simulation.Rmd | 248 inst/doc/spant-metabolite-simulation.html | 829 +-- inst/doc/spant-preprocessing.R | 92 inst/doc/spant-preprocessing.Rmd | 152 inst/doc/spant-preprocessing.html | 606 +- inst/reports/mpress_gaba.Rmd | 86 man/Arg.mrs_data.Rd | 34 man/Conj.mrs_data.Rd | 34 man/Im.mrs_data.Rd | 34 man/Mod.mrs_data.Rd | 34 man/Ncoils.Rd | 28 man/Ndyns.Rd | 28 man/Npts.Rd | 34 man/Nspec.Rd | 28 man/Nx.Rd | 28 man/Ny.Rd | 28 man/Nz.Rd | 28 man/Re.mrs_data.Rd | 34 man/abfit_opts.Rd | 332 - man/abfit_opts_v1_9_0.Rd | 38 man/add_noise.Rd | 46 man/align.Rd | 78 man/apodise_xy.Rd | 42 man/append_basis.Rd | 38 man/apply_pvc.Rd | 52 man/array2mrs_data.Rd | 72 man/back_extrap_ar.Rd | 74 man/basis2mrs_data.Rd | 54 man/bc_als.Rd | 50 man/bc_constant.Rd | 40 man/beta2lw.Rd | 38 man/bin_spec.Rd | 42 man/calc_coil_noise_cor.Rd | 34 man/calc_coil_noise_sd.Rd | 34 man/calc_sd_poly.Rd | 42 man/check_lcm.Rd | 22 man/check_tqn.Rd | 22 man/circ_mask.Rd | 42 man/collapse_to_dyns.Rd | 52 man/comb_coils.Rd | 104 man/comb_fit_list_fit_tables.Rd | 76 man/comb_fit_list_result_tables.Rd | 48 man/comb_fit_tables.Rd | 46 man/comb_metab_ref.Rd | 38 man/conv_mrs.Rd | 38 man/crop_spec.Rd | 46 man/crop_td_pts_pot.Rd | 42 man/crop_xy.Rd | 42 man/crossprod_3d.Rd | 42 man/decimate_mrs_fd.Rd | 38 man/decimate_mrs_td.Rd | 46 man/def_N.Rd | 28 man/def_acq_paras.Rd | 80 man/def_fs.Rd | 28 man/def_ft.Rd | 28 man/def_nuc.Rd | 28 man/def_ref.Rd | 28 man/dicom_reader.Rd | 64 man/diff_mrs.Rd | 38 man/downsample_mrs_fd.Rd | 34 man/downsample_mrs_td.Rd | 42 man/elliptical_mask.Rd | 58 man/est_noise_sd.Rd | 54 man/fd2td.Rd | 34 man/fd_conv_filt.Rd | 36 man/fit_diags.Rd | 38 man/fit_mrs.Rd | 160 man/fit_res2csv.Rd | 36 man/fp_phase.Rd | 34 man/fp_scale.Rd | 38 man/fs.Rd | 34 man/ft_dyns.Rd | 48 man/ft_shift.Rd | 34 man/ft_shift_mat.Rd | 38 man/gausswin_2d.Rd | 62 man/gen_F.Rd | 42 man/gen_F_xy.Rd | 42 man/get_1h_brain_basis_paras_v3.Rd | 48 man/get_2d_psf.Rd | 64 man/get_acq_paras.Rd | 34 man/get_dyns.Rd | 40 man/get_even_dyns.Rd | 34 man/get_fh_dyns.Rd | 34 man/get_fit_map.Rd | 32 man/get_fp.Rd | 34 man/get_guassian_pulse.Rd | 36 man/get_head_dyns.Rd | 38 man/get_lcm_cmd.Rd | 22 man/get_metab.Rd | 34 man/get_mol_names.Rd | 32 man/get_mol_paras.Rd | 32 man/get_mrs_affine.Rd | 46 man/get_mrsi2d_seg.Rd | 50 man/get_mrsi_voi.Rd | 48 man/get_odd_dyns.Rd | 34 man/get_ref.Rd | 34 man/get_sh_dyns.Rd | 34 man/get_slice.Rd | 38 man/get_subset.Rd | 82 man/get_svs_voi.Rd | 38 man/get_tail_dyns.Rd | 38 man/get_td_amp.Rd | 50 man/get_tqn_cmd.Rd | 22 man/get_uncoupled_mol.Rd | 74 man/get_voi_cog.Rd | 34 man/gridplot.Rd | 32 man/gridplot.mrs_data.Rd | 76 man/hsvd.Rd | 52 man/hsvd_filt.Rd | 84 man/hsvd_vec.Rd | 58 man/hz.Rd | 42 man/ift_shift.Rd | 34 man/ift_shift_mat.Rd | 38 man/image.mrs_data.Rd | 124 man/img2kspace_xy.Rd | 34 man/int_spec.Rd | 46 man/interleave_dyns.Rd | 34 man/inv_even_dyns.Rd | 34 man/inv_odd_dyns.Rd | 34 man/is.def.Rd | 34 man/is_fd.Rd | 38 man/kspace2img_xy.Rd | 34 man/l2_reg.Rd | 90 man/lb.Rd | 60 man/lw2alpha.Rd | 38 man/lw2beta.Rd | 38 man/mask_dyns.Rd | 40 man/mask_fit_res.Rd | 46 man/mask_xy.Rd | 42 man/mask_xy_mat.Rd | 44 man/mat2mrs_data.Rd | 72 man/max_mrs.Rd | 34 man/max_mrs_interp.Rd | 38 man/mean.list.Rd | 38 man/mean.mrs_data.Rd | 38 man/mean_dyn_blocks.Rd | 38 man/mean_dyn_pairs.Rd | 34 man/mean_dyns.Rd | 34 man/mean_mrs_list.Rd | 34 man/median_dyns.Rd | 34 man/mod_td.Rd | 34 man/mrs_data2mat.Rd | 44 man/mvfftshift.Rd | 38 man/mvifftshift.Rd | 38 man/n2coord.Rd | 32 man/ortho3.Rd | 116 man/ortho3_inter.Rd | 68 man/pg_extrap_xy.Rd | 80 man/phase.Rd | 42 man/plot.fit_result.Rd | 154 man/plot.mrs_data.Rd | 224 man/plot_slice_fit.Rd | 66 man/plot_slice_fit_inter.Rd | 72 man/plot_slice_map_inter.Rd | 122 man/plot_voi_overlay.Rd | 44 man/plot_voi_overlay_seg.Rd | 40 man/ppm.Rd | 70 man/precomp.Rd | 40 man/print.fit_result.Rd | 32 man/print.mrs_data.Rd | 36 man/qn_states.Rd | 34 man/rats.Rd | 120 man/re_weighting.Rd | 42 man/read_basis.Rd | 42 man/read_basis_ac.Rd | 42 man/read_ima_coil_dir.Rd | 52 man/read_ima_dyn_dir.Rd | 52 man/read_mrs.Rd | 116 man/read_siemens_txt_hdr.Rd | 44 man/read_tqn_fit.Rd | 44 man/recon_twix_2d_mrsi.Rd | 34 man/rectangular_mask.Rd | 58 man/reexports.Rd | 34 man/rep_array_dim.Rd | 42 man/rep_dyn.Rd | 38 man/rep_mrs.Rd | 74 man/resample_voi.Rd | 42 man/reslice_to_mrs.Rd | 42 man/reson_table2mrs_data.Rd | 52 man/rm_dyns.Rd | 40 man/scale_amp_molal_pvc.Rd | 54 man/scale_amp_molar.Rd | 58 man/scale_amp_ratio.Rd | 40 man/scale_amp_ratio_value.Rd |only man/scale_amp_water_ratio.Rd | 42 man/scale_mrs_amp.Rd | 40 man/scale_spec.Rd | 80 man/sd.Rd | 38 man/sd.mrs_data.Rd | 38 man/seconds.Rd | 34 man/set_def_acq_paras.Rd | 56 man/set_lcm_cmd.Rd | 28 man/set_lw.Rd | 46 man/set_mask_xy_mat.Rd | 44 man/set_precomp_mode.Rd | 28 man/set_precomp_verbose.Rd | 28 man/set_ref.Rd | 32 man/set_td_pts.Rd | 42 man/set_tqn_cmd.Rd | 28 man/shift.Rd | 42 man/shift_basis.Rd | 40 man/sim_brain_1h.Rd | 88 man/sim_noise.Rd | 74 man/sim_resonances.Rd | 104 man/sim_zero.Rd | 50 man/sort_basis.Rd | 34 man/spant-package.Rd | 94 man/spant_abfit_benchmark.Rd | 40 man/spant_mpress_drift.Rd | 32 man/spant_simulation_benchmark.Rd | 36 man/spec_decomp.Rd | 50 man/spec_op.Rd | 64 man/ssp.Rd | 48 man/stackplot.Rd | 32 man/stackplot.fit_result.Rd | 178 man/stackplot.mrs_data.Rd | 206 man/sub_mean_dyns.Rd | 34 man/sum_coils.Rd | 34 man/sum_dyns.Rd | 34 man/sum_mrs.Rd | 44 man/sum_mrs_list.Rd | 34 man/svs_1h_brain_analysis.Rd | 152 man/svs_1h_brain_batch_analysis.Rd | 86 man/td2fd.Rd | 34 man/tdsr.Rd | 52 man/varpro_3_para_opts.Rd | 80 man/varpro_basic_opts.Rd | 38 man/vec2mrs_data.Rd | 74 man/write_basis.Rd | 36 man/write_mrs.Rd | 44 man/write_mrs_nifti.Rd | 32 man/zero_fade_spec.Rd | 46 man/zero_nzoc.Rd | 38 man/zf.Rd | 58 man/zf_xy.Rd | 44 tests/testthat.R | 8 tests/testthat/test_fitting.R | 148 tests/testthat/test_nifti.R | 72 tests/testthat/test_preproc.R | 8 tests/testthat/test_qm_sim.R | 22 vignettes/abfit-baseline-opts.Rmd | 184 vignettes/spant-basis-simulation.Rmd | 148 vignettes/spant-intro.Rmd | 186 vignettes/spant-metabolite-simulation.Rmd | 248 vignettes/spant-preprocessing.Rmd | 152 303 files changed, 27334 insertions(+), 26258 deletions(-)
Title: Estimating Hierarchical Linear Models for Single-Case Designs
Description: Provides a set of tools for estimating hierarchical linear
models and effect sizes based on data from single-case designs.
Functions are provided for calculating standardized mean difference effect sizes that
are directly comparable to standardized mean differences estimated from between-subjects randomized experiments,
as described in Hedges, Pustejovsky, and Shadish (2012) <DOI:10.1002/jrsm.1052>;
Hedges, Pustejovsky, and Shadish (2013) <DOI:10.1002/jrsm.1086>; and
Pustejovsky, Hedges, and Shadish (2014) <DOI:10.3102/1076998614547577>.
Includes an interactive web interface.
Author: James Pustejovsky [aut, cre],
Man Chen [aut],
Bethany Hamilton [aut]
Maintainer: James Pustejovsky <jepusto@gmail.com>
Diff between scdhlm versions 0.6.0 dated 2022-07-07 and 0.7.0 dated 2022-11-07
DESCRIPTION | 11 MD5 | 97 ++--- NAMESPACE | 7 NEWS.md | 17 R/REML-ES-functions.R | 2 R/calc_BCSMD.R |only R/graphing-functions.R | 4 R/matrix-functions.R | 15 R/scdhlm-package.r | 40 +- R/simulation-functions.R | 2 build/partial.rdb |binary build/vignette.rds |binary data/Bryant2018.RData |binary data/Datchuk.RData |binary data/DelemereDounavi.RData |binary data/Lambert.RData |binary data/Rodgers.RData |binary inst/doc/Estimating-effect-sizes.Rmd | 12 inst/doc/Estimating-effect-sizes.html | 188 +++++----- inst/shiny-examples/scdhlm/code-chunks/es-RML-3level.R | 4 inst/shiny-examples/scdhlm/helper-functions.R | 15 inst/shiny-examples/scdhlm/lme-fit.R | 6 inst/shiny-examples/scdhlm/mappings.R | 32 - inst/shiny-examples/scdhlm/markdown/Accessing_scdhlm.Rmd | 27 + inst/shiny-examples/scdhlm/markdown/Accessing_scdhlm.md | 65 ++- inst/shiny-examples/scdhlm/markdown/demos.md |only inst/shiny-examples/scdhlm/markdown/example-data.md | 22 - inst/shiny-examples/scdhlm/markdown/references.md | 12 inst/shiny-examples/scdhlm/markdown/scdhlm.Rmd | 4 inst/shiny-examples/scdhlm/markdown/scdhlm.md | 11 inst/shiny-examples/scdhlm/rsconnect/shinyapps.io/jepusto/scdhlm.dcf | 6 inst/shiny-examples/scdhlm/server.R | 145 ++++++- inst/shiny-examples/scdhlm/ui.R | 17 man/Bryant2018.Rd | 3 man/Lambert.Rd | 9 man/Laski.Rd | 1 man/Thiemann2001.Rd | 2 man/Thorne.Rd | 21 - man/batch_calc_BCSMD.Rd |only man/calc_BCSMD.Rd |only man/default_times.Rd |only man/graph_SCD.Rd | 2 man/simulate.g_REML.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/test-calc_BCSMD.R |only tests/testthat/test-centering.R |only tests/testthat/test-g_mlm.R | 106 ++++- tests/testthat/test-scdhlm-app.R | 3 tests/testthat/test_HPS_examples.R | 1 tests/testthat/test_graphing_functions.R | 37 - tests/testthat/test_preprocess_function.R | 12 tests/testthat/test_user_examples.R | 2 vignettes/Estimating-effect-sizes.Rmd | 12 53 files changed, 615 insertions(+), 359 deletions(-)
Title: 'ADMB' to R Interface Functions
Description: A series of functions to call 'AD Model Builder' (i.e.,
compile and run models) from within R, read the results back
into R as 'admb' objects, and provide standard accessors (i.e.
coef(), vcov(), etc.)
Author: Ben Bolker [aut, cre],
Hans Skaug [aut],
Jeff Laake [aut]
Maintainer: Ben Bolker <bolker@mcmaster.ca>
Diff between R2admb versions 0.7.16.2 dated 2020-03-09 and 0.7.16.3 dated 2022-11-07
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/R2admb-package.r | 3 +-- build/vignette.rds |binary inst/NEWS.Rd | 8 ++++---- inst/doc/R2admb.R | 4 ++-- inst/doc/R2admb.Rnw | 4 ++-- inst/doc/R2admb.pdf |binary man/R2admb-package.Rd | 2 +- vignettes/R2admb.Rnw | 4 ++-- 10 files changed, 25 insertions(+), 26 deletions(-)
Title: Hierarchical Cluster Analysis of Nominal Data
Description: Similarity measures for hierarchical clustering of objects characterized by
nominal (categorical) variables. Evaluation criteria for nominal data clustering.
Author: Zdenek Sulc [aut, cre],
Jana Cibulkova [aut],
Hana Rezankova [aut],
Jaroslav Hornicek [aut]
Maintainer: Zdenek Sulc <zdenek.sulc@vse.cz>
Diff between nomclust versions 2.5.0 dated 2021-07-12 and 2.6.2 dated 2022-11-07
DESCRIPTION | 16 +- MD5 | 124 +++++++++------- NAMESPACE | 8 + R/RcppExports.R | 16 ++ R/SIMILARITY.R | 58 ++++--- R/anderberg.R |only R/burnaby.R |only R/dend.plot.R | 372 ++++++++++++++++++++++++-------------------------- R/eskin.R | 38 +++-- R/evalclust.R | 11 - R/freq.rel.R |only R/gambaryan.R |only R/globals.R |only R/good1.R | 39 +++-- R/good2.R | 36 +++- R/good3.R | 36 +++- R/good4.R | 36 +++- R/goodall1.R |only R/goodall2.R |only R/goodall3.R |only R/goodall4.R |only R/iof.R | 36 +++- R/lin.R | 36 +++- R/lin1.R | 36 +++- R/nomclust.R | 48 +++++- R/nomprox.R | 7 R/of.R | 36 +++- R/sm.R | 37 +++- R/smirnov.R |only R/ve.R | 37 +++- R/vm.R | 38 +++-- data/CA.methods.RData |binary data/data20.RData |binary man/anderberg.Rd |only man/burnaby.Rd |only man/dend.plot.Rd | 18 +- man/eskin.Rd | 18 ++ man/evalclust.Rd | 3 man/gambaryan.Rd |only man/good1.Rd | 17 ++ man/good2.Rd | 17 ++ man/good3.Rd | 17 ++ man/good4.Rd | 17 ++ man/goodall1.Rd |only man/goodall2.Rd |only man/goodall3.Rd |only man/goodall4.Rd |only man/iof.Rd | 17 ++ man/lin.Rd | 17 ++ man/lin1.Rd | 17 ++ man/nomclust.Rd | 18 +- man/nomprox.Rd | 3 man/of.Rd | 17 ++ man/sm.Rd | 17 ++ man/smirnov.Rd |only man/ve.Rd | 20 ++ man/vm.Rd | 19 ++ src/RcppExports.cpp | 75 ++++++++++ src/anderberg_cpp.cpp |only src/burnaby_cpp.cpp |only src/eskin_cpp.cpp | 8 - src/gambaryan_cpp.cpp |only src/good1_cpp.cpp | 14 - src/good2_cpp.cpp | 14 - src/good3_cpp.cpp | 10 - src/good4_cpp.cpp | 10 - src/iof_cpp.cpp | 8 - src/lin1_cpp.cpp | 16 +- src/lin_cpp.cpp | 16 +- src/of_cpp.cpp | 8 - src/sm_cpp.cpp | 6 src/smirnov_cpp.cpp |only src/ve_cpp.cpp | 8 - src/vm_cpp.cpp | 8 - 74 files changed, 1028 insertions(+), 526 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-12 0.1.6
2021-07-07 0.1.5
2021-06-21 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-24 0.4.4
2022-08-22 0.4.3
2022-05-19 0.4.1
Title: Simulation of Complex Synthetic Data Information
Description: Tools and methods to simulate populations for surveys based
on auxiliary data. The tools include model-based methods, calibration and
combinatorial optimization algorithms, see Templ, Kowarik and Meindl (2017) <doi:10.18637/jss.v079.i10>) and
Templ (2017) <doi:10.1007/978-3-319-50272-4>. The package was developed with support of
the International Household Survey Network, DFID Trust Fund TF011722 and funds
from the World bank.
Author: Matthias Templ [aut, cre],
Alexander Kowarik [aut] ,
Bernhard Meindl [aut],
Andreas Alfons [aut],
Mathieu Ribatet [ctb],
Johannes Gussenbauer [ctb],
Siro Fritzmann [ctb]
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between simPop versions 2.1.1 dated 2022-10-26 and 2.1.2 dated 2022-11-07
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/simContinuous.R | 4 +--- build/partial.rdb |binary man/simContinuous.Rd | 2 -- 5 files changed, 9 insertions(+), 13 deletions(-)
Title: Test of Stationarity and Localized Autocovariance
Description: Provides test of second-order stationarity for time
series (for dyadic and arbitrary-n length data). Provides
localized autocovariance, with confidence intervals,
for locally stationary (nonstationary) time series.
See Nason, G P (2013) "A test for second-order stationarity and
approximate confidence intervals for localized autocovariance
for locally stationary time series." Journal of the Royal Statistical
Society, Series B, 75, 879-904. <doi:10.1111/rssb.12015>.
Author: Guy Nason [aut, cre]
Maintainer: Guy Nason <g.nason@imperial.ac.uk>
Diff between locits versions 1.7.5 dated 2022-05-10 and 1.7.6 dated 2022-11-07
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/partial.rdb |binary inst/CHANGES | 2 ++ src/CPkPlj.c | 16 ++++++++++++++-- src/CcovI.c | 6 +++++- 6 files changed, 30 insertions(+), 12 deletions(-)
Title: A Data Cube 'dplyr' Backend
Description: An implementation of a data cube extracted out of 'dplyr' for
backward compatibility.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between cubelyr versions 1.0.1 dated 2020-11-24 and 1.0.2 dated 2022-11-07
DESCRIPTION | 27 ++++++++++++--------------- MD5 | 14 +++++++------- NEWS.md | 6 ++++-- R/data-nasa.R | 3 ++- R/error.R | 2 +- README.md | 2 ++ man/cubelyr-package.Rd | 3 +-- man/nasa.Rd | 3 ++- 8 files changed, 31 insertions(+), 29 deletions(-)
Title: Carbon-Water Coupled Model
Description: A carbon-water coupled model (TRIPLEX-CW-Flux) is based on two well-established models, TRIPLEX-Flux model and Penman–Monteith model, integrates soil water and water vapor pressure deficits into the stomata conductance submodule to estimate net ecosystem production and evapotranspiration in forest ecosystems.<https://github.com/ShulanSun/rTRIPLEX_CW_Flux>.
Author: Shulan Sun [aut, cre],
Wenhua Xiang [aut],
Shuai Ouyang [aut],
Xiaolu Zhou [aut],
Changhui Peng [aut]
Maintainer: Shulan Sun <sslhhxx@163.com>
Diff between rTRIPLEXCWFlux versions 0.1.0 dated 2022-10-17 and 0.2.0 dated 2022-11-07
DESCRIPTION | 18 ++++++++++++------ MD5 | 10 +++++----- build/partial.rdb |binary inst/doc/model-vignette.Rmd | 2 +- inst/doc/model-vignette.html | 9 +++++---- vignettes/model-vignette.Rmd | 2 +- 6 files changed, 24 insertions(+), 17 deletions(-)
More information about rTRIPLEXCWFlux at CRAN
Permanent link
Title: Visualization of Restricted Cubic Splines
Description: Restricted Cubic Splines were performed to explore the shape of association form of "U, inverted U,
L" shape and test linearity or non-linearity base on "Cox,Logistic,linear" regression, and auto output Restricted Cubic Splines figures.
The Restricted Cubic Splines method were based on
Suli Huang (2022) <doi:10.1016/j.ecoenv.2022.113183>,Amit Kaura (2019) <doi:10.1136/bmj.l6055>,
and Harrell Jr (2015, ISBN:978-3-319-19424-0 (Print) 978-3-319-19425-7 (Online)).
Author: Zhiqiang Nie [aut, cre, cph] ,
JunZhang [ctb],
Chaolei Chen [ctb]
Maintainer: Zhiqiang Nie <niezhiqiang@gdph.org.cn>
Diff between rcssci versions 0.1.0 dated 2022-10-10 and 0.2.0 dated 2022-11-07
DESCRIPTION | 15 +++++----- MD5 | 66 +++++++++++++++++++++++----------------------- R/rcs_cox.lshap.R | 27 ++++++++++-------- R/rcs_cox.nshap.R | 28 ++++++++++--------- R/rcs_cox.prob.R | 31 +++++++++++---------- R/rcs_cox.ushap.R | 28 ++++++++++--------- R/rcs_linear.lshap.R | 27 +++++++++++------- R/rcs_linear.nshap.R | 25 +++++++++++------ R/rcs_linear.prob.R | 27 +++++++++++------- R/rcs_linear.ushap.R | 27 +++++++++++------- R/rcs_logistic.lshap.R | 25 +++++++++-------- R/rcs_logistic.nshap.R | 24 +++++++++------- R/rcs_logistic.prob.R | 24 +++++++++------- R/rcs_logistic.ushap.R | 24 +++++++++------- R/rcssci_cox.R | 17 ++++++----- R/rcssci_linear.R | 17 ++++++----- R/rcssci_logistic.R | 17 ++++++----- data/sbpdata.rdata |binary man/rcs_cox.lshap.Rd | 8 +++-- man/rcs_cox.nshap.Rd | 8 +++-- man/rcs_cox.prob.Rd | 8 +++-- man/rcs_cox.ushap.Rd | 8 +++-- man/rcs_linear.lshap.Rd | 8 +++-- man/rcs_linear.nshap.Rd | 6 ++-- man/rcs_linear.prob.Rd | 8 +++-- man/rcs_linear.ushap.Rd | 8 +++-- man/rcs_logistic.lshap.Rd | 8 +++-- man/rcs_logistic.nshap.Rd | 8 +++-- man/rcs_logistic.prob.Rd | 8 +++-- man/rcs_logistic.ushap.Rd | 8 +++-- man/rcssci_cox.Rd | 8 +++-- man/rcssci_linear.Rd | 8 +++-- man/rcssci_logistic.Rd | 8 +++-- man/sbpdata.Rd | 2 - 34 files changed, 328 insertions(+), 241 deletions(-)
Title: Precipitation R Recipes
Description: An open-access tool/framework to download, validate, visualize,
and analyze multi-source precipitation data across various spatio-temporal
scales. Ultimately providing the hydrology science community with the tools
for consistent and reproducible analysis regarding precipitation.
Author: Mijael Rodrigo Vargas Godoy [aut, cre]
,
Yannis Markonis [aut, ths]
Maintainer: Mijael Rodrigo Vargas Godoy <mirovago@gmail.com>
Diff between pRecipe versions 0.4.0 dated 2022-10-13 and 0.4.2 dated 2022-11-07
DESCRIPTION | 10 MD5 | 81 NEWS.md | 10 R/crop_data.R | 1 R/download_20cr.R | 2 R/download_chirps.R | 2 R/download_cmap.R | 2 R/download_cmorph.R | 2 R/download_cpc.R | 2 R/download_cru_ts.R | 2 R/download_em_earth.R | 2 R/download_era20c.R | 2 R/download_era5.R | 2 R/download_ghcn.R | 2 R/download_gldas_clsm.R | 2 R/download_gldas_noah.R | 2 R/download_gldas_vic.R | 2 R/download_gpcc.R | 2 R/download_gpcp.R | 2 R/download_gpm_imerg.R | 2 R/download_mswep.R | 2 R/download_ncep_doe.R | 2 R/download_ncep_ncar.R | 2 R/download_persiann.R | 2 R/download_precl.R | 2 R/download_terraclimate.R | 2 R/download_trmm_3b43.R | 2 R/download_udel.R | 2 R/fix_name_out.R | 1 R/make_ts.R | 4 R/mon_to_year.R | 1 R/rescale_data.R | 1 R/subset_space.R | 1 R/subset_spacetime.R | 1 R/subset_time.R | 1 build/vignette.rds |binary inst/CITATION |only inst/doc/pRecipe.R | 5 inst/doc/pRecipe.Rmd | 19 inst/doc/pRecipe.html | 210 - vignettes/pRecipe.Rmd | 19 vignettes/pRecipe.bib | 5615 ---------------------------------------------- 42 files changed, 344 insertions(+), 5684 deletions(-)
Title: Out of Memory Vectors
Description: Core functionality for working with vectors (numeric, integer,
logical and character) that are too large to keep in memory. The vectors are
kept (partially) on disk using memory mapping. This package contains the
basic functionality for working with these memory mapped vectors (e.g.
creating, indexing, ordering and sorting) and provides C++ headers which can
be used by other packages to extend the functionality provided in this
package.
Author: Jan van der Laan
Maintainer: Jan van der Laan <r@eoos.dds.nl>
Diff between lvec versions 0.2.4 dated 2022-10-05 and 0.2.5 dated 2022-11-07
DESCRIPTION | 10 ++-- MD5 | 6 +- NEWS | 5 ++ inst/include/memmap.h | 118 ++++++++++++++------------------------------------ 4 files changed, 48 insertions(+), 91 deletions(-)
More information about itscalledsoccer at CRAN
Permanent link
Title: Functional Data Clustering Using Adaptive Density Peak Detection
Description: An implementation of a clustering algorithm for functional data based on adaptive density peak detection technique, in which the density is estimated by functional k-nearest neighbor density estimation based on a proposed semi-metric between functions. The proposed functional data clustering algorithm is computationally fast since it does not need iterative process. (Alex Rodriguez and Alessandro Laio (2014) <doi:10.1126/science.1242072>; Xiao-Feng Wang and Yifan Xu (2016) <doi:10.1177/0962280215609948>).
Author: Rui Ren [aut, cre],
Kuangnan Fang [aut],
Qingzhao Zhang [aut],
Xiaofeng Wang [aut]
Maintainer: Rui Ren <xmurr@stu.xmu.edu.cn>
Diff between FADPclust versions 1.1.0 dated 2022-11-04 and 1.1.1 dated 2022-11-07
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/FADPclust.R | 40 ++++++++++++++++++++++++++-------------- R/FADPplot.R | 8 ++++---- R/FADPsummary.R | 14 +++++++++----- man/FADPclust.Rd | 32 ++++++++++++++++++++++---------- man/FADPplot.Rd | 8 ++++---- man/FADPsummary.Rd | 8 ++++---- 8 files changed, 79 insertions(+), 51 deletions(-)
Title: The Universal Character Encoding Detector
Description: R bindings of the 'uchardet', encoding detector library from Mozilla
(<https://www.freedesktop.org/wiki/Software/uchardet/>). It takes a sequence
of bytes in an unknown character encoding and without any additional
information, and attempts to get the encoding of the text. All return names of
the encodings are iconv-compatible.
Author: Artem Klevtsov [aut, cre] ,
Philipp Upravitelev [ctb]
Maintainer: Artem Klevtsov <a.a.klevtsov@gmail.com>
Diff between uchardet versions 1.1.0 dated 2020-09-02 and 1.1.1 dated 2022-11-07
DESCRIPTION | 10 - MD5 | 28 +-- NEWS.md | 6 R/detect.R | 2 README.md | 43 ++--- build/vignette.rds |binary inst/doc/uchardet.R | 2 inst/doc/uchardet.Rmd | 2 inst/doc/uchardet.html | 339 ++++++++++++++++++++++++++--------------------- inst/examples/ko/uhc.smi | 32 ++-- inst/tinytest/setup.R | 4 man/detect_file_enc.Rd | 2 man/detect_raw_enc.Rd | 12 - man/uchardet.Rd | 12 - vignettes/uchardet.Rmd | 2 15 files changed, 259 insertions(+), 237 deletions(-)
Title: Imputation of Missing Data in Sequence Analysis
Description: Multiple imputation of missing data present in a dataset through the prediction based on either a random forest or a multinomial regression model. Covariates and time-dependant covariates can be included in the model. The prediction of the missing values is based on the method of Halpin (2012) <https://researchrepository.ul.ie/articles/report/Multiple_imputation_for_life-course_sequence_data/19839736>.
Author: Andre Berchtold [aut, cre],
Anthony Guinchard [aut],
Kevin Emery [aut],
Kamyar Taher [aut]
Maintainer: Andre Berchtold <andre.berchtold@unil.ch>
Diff between seqimpute versions 1.7 dated 2022-09-08 and 1.8 dated 2022-11-07
DESCRIPTION | 14 +++++++------- MD5 | 18 +++++++++--------- R/SI2_ComputeImputeOrder.R | 1 + R/SI3_SpecificModelImputation.R | 3 +-- R/SICommon.R | 8 ++++---- R/seqimpute.R | 9 +++++++++ data/CO.RData |binary data/COt.RData |binary data/OD.RData |binary man/seqimpute.Rd | 3 +++ 10 files changed, 34 insertions(+), 22 deletions(-)
Title: Generate Publication Ready Visualizations of Single Cell
Transcriptomics Data
Description: A system that provides a streamlined way of generating publication ready plots for known Single-Cell transcriptomics data in a “publication ready” format. This is, the goal is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.
Author: Enrique Blanco-Carmona [cre, aut]
Maintainer: Enrique Blanco-Carmona <scpubr@gmail.com>
Diff between SCpubr versions 1.0.3 dated 2022-11-06 and 1.0.4 dated 2022-11-07
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 29 +++++++++++++++-------------- R/do_GeyserPlot.R | 2 +- README.md | 2 +- 5 files changed, 24 insertions(+), 23 deletions(-)
Title: Credit Risk Scorecard
Description: The `scorecard` package makes the development of credit risk scorecard
easier and efficient by providing functions for some common tasks,
such as data partition, variable selection, woe binning, scorecard scaling,
performance evaluation and report generation. These functions can also used
in the development of machine learning models.
The references including:
1. Refaat, M. (2011, ISBN: 9781447511199). Credit Risk Scorecard:
Development and Implementation Using SAS.
2. Siddiqi, N. (2006, ISBN: 9780471754510). Credit risk scorecards.
Developing and Implementing Intelligent Credit Scoring.
Author: Shichen Xie [aut, cre]
Maintainer: Shichen Xie <xie@shichen.name>
Diff between scorecard versions 0.3.9 dated 2022-07-24 and 0.4.0 dated 2022-11-07
DESCRIPTION | 10 - MD5 | 40 ++--- NAMESPACE | 1 NEWS.md | 6 R/perf.R | 208 ++++++------------------------ R/report.R | 18 +- R/scorecard.R | 157 +++++++++------------- R/var_filter.R | 287 ++++++++++++++++++++++++++++------------- R/woebin.R | 353 ++++++++++++++++++++++++++++----------------------- README.md | 4 build/vignette.rds |binary inst/doc/demo.html | 70 +++++++--- inst/extdata/demo.R | 6 man/gains_table.Rd | 66 +-------- man/perf_eva.Rd | 65 +-------- man/perf_psi.Rd | 54 +------ man/scorecard.Rd | 36 +---- man/scorecard2.Rd | 55 +++---- man/scorecard_ply.Rd | 25 --- man/var_filter.Rd | 15 +- man/woebin_adj.Rd | 21 +-- 21 files changed, 708 insertions(+), 789 deletions(-)
Title: Board Game Graphics
Description: Functions to make board game graphics with the 'ggplot2', 'grid', 'rayrender', 'rayvertex', and 'rgl' packages. Specializes in game diagrams, animations, and "Print & Play" layouts for the 'piecepack' <https://www.ludism.org/ppwiki> but can make graphics for other board game systems. Includes configurations for several public domain game systems such as checkers, (double-18) dominoes, go, 'piecepack', playing cards, etc.
Author: Trevor L Davis [aut, cre] ,
Linux Foundation [dtc] ,
Delapouite <https://delapouite.com/> [ill] ,
Creative Commons [ill] ` uses "license badges"
from Creative Commons to describe the generated print-and-play
file's license)
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between piecepackr versions 1.12.0 dated 2022-08-31 and 1.12.2 dated 2022-11-07
DESCRIPTION | 12 +- MD5 | 18 +-- NAMESPACE | 1 NEWS.md | 13 ++ R/piece-rayrender.R | 5 R/piece_mesh-rayvertex.R | 2 R/utils-pnp-letter-compact.R | 2 R/zzz.R | 2 README.md | 2 tests/testthat/_snaps/pp_shape/hex-pattern.svg | 134 ++++++++++++------------- 10 files changed, 104 insertions(+), 87 deletions(-)
Title: Recommended Learners for 'mlr3'
Description: Recommended Learners for 'mlr3'. Extends 'mlr3'
with interfaces to essential machine learning packages on
CRAN. This includes, but is not limited to: (penalized) linear and
logistic regression, linear and quadratic discriminant analysis,
k-nearest neighbors, naive Bayes, support vector machines, and
gradient boosting.
Author: Michel Lang [cre, aut] ,
Quay Au [aut] ,
Stefan Coors [aut] ,
Patrick Schratz [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3learners versions 0.5.4 dated 2022-08-15 and 0.5.5 dated 2022-11-07
DESCRIPTION | 8 +-- MD5 | 50 +++++++++++------------ NEWS.md | 5 ++ R/LearnerClassifKKNN.R | 2 R/LearnerClassifLogReg.R | 2 R/LearnerClassifNnet.R | 2 R/LearnerClassifRanger.R | 2 R/LearnerClassifXgboost.R | 51 +++++++++++++++++++++--- R/LearnerRegrKKNN.R | 2 R/LearnerRegrNnet.R | 2 R/LearnerRegrRanger.R | 2 R/LearnerRegrXgboost.R | 41 ++++++++++++++++--- build/partial.rdb |binary inst/paramtest/test_paramtest_classif.xgboost.R | 7 +-- inst/paramtest/test_paramtest_regr.xgboost.R | 7 +-- man/mlr_learners_classif.kknn.Rd | 2 man/mlr_learners_classif.log_reg.Rd | 2 man/mlr_learners_classif.nnet.Rd | 2 man/mlr_learners_classif.ranger.Rd | 2 man/mlr_learners_classif.xgboost.Rd | 31 ++++++++++++++ man/mlr_learners_regr.kknn.Rd | 2 man/mlr_learners_regr.nnet.Rd | 2 man/mlr_learners_regr.ranger.Rd | 2 man/mlr_learners_regr.xgboost.Rd | 31 ++++++++++++++ tests/testthat/test_classif_xgboost.R | 14 ++++++ tests/testthat/test_regr_xgboost.R | 14 ++++++ 26 files changed, 226 insertions(+), 61 deletions(-)
Title: Clustering for Business Analytics
Description: Implements clustering techniques such as Proximus and Rock, utility functions for efficient computation of cross distances and data manipulation.
Author: Christian Buchta and Michael Hahsler
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>
Diff between cba versions 0.2-21 dated 2019-04-18 and 0.2-22 dated 2022-11-07
CHANGELOG | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/proximus.r | 2 +- data/Mushroom.rda |binary data/Votes.rda |binary data/townships.rda |binary man/proximus.Rd | 4 ++-- src/proximus.c | 2 +- 9 files changed, 20 insertions(+), 16 deletions(-)
Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package
supports the static site generator 'Hugo' (<https://gohugo.io>) best,
and it also supports 'Jekyll' (<https://jekyllrb.com>) and 'Hexo'
(<https://hexo.io>).
Author: Yihui Xie [aut, cre] ,
Christophe Dervieux [aut] ,
Alison Presmanes Hill [aut] ,
Amber Thomas [ctb],
Beilei Bian [ctb],
Brandon Greenwell [ctb],
Brian Barkley [ctb],
Deependra Dhakal [ctb],
Eric Nantz [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb] [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 1.14 dated 2022-11-04 and 1.15 dated 2022-11-07
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/render.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Approximate String Matching, Fuzzy Text Search, and String
Distance Functions
Description: Implements an approximate string matching version of R's native
'match' function. Also offers fuzzy text search based on various string
distance measures. Can calculate various string distances based on edits
(Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment), qgrams (q-
gram, cosine, jaccard distance) or heuristic metrics (Jaro, Jaro-Winkler). An
implementation of soundex is provided as well. Distances can be computed between
character vectors while taking proper care of encoding or between integer
vectors representing generic sequences. This package is built for speed and
runs in parallel by using 'openMP'. An API for C or C++ is exposed as well.
Reference: MPJ van der Loo (2014) <doi:10.32614/RJ-2014-011>.
Author: Mark van der Loo [aut, cre] ,
Jan van der Laan [ctb],
R Core Team [ctb],
Nick Logan [ctb],
Chris Muir [ctb],
Johannes Gruber [ctb],
Brian Ripley [ctb]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between stringdist versions 0.9.9 dated 2022-10-20 and 0.9.10 dated 2022-11-07
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- inst/doc/RJournal_6_111-122-2014.pdf |binary inst/doc/stringdist_C-Cpp_api.pdf |binary src/dist.h | 2 +- src/stringdist.c | 4 ++-- 6 files changed, 11 insertions(+), 11 deletions(-)
Title: Tidy Dataframes and Expressions with Statistical Details
Description: Utilities for producing dataframes with rich details for the
most common types of statistical approaches and tests: parametric,
nonparametric, robust, and Bayesian t-test, one-way ANOVA, correlation
analyses, contingency table analyses, and meta-analyses. The
functions are pipe-friendly and provide a consistent syntax to work
with tidy data. These dataframes additionally contain expressions with
statistical details, and can be used in graphing packages. This
package also forms the statistical processing backend for
'ggstatsplot'. References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between statsExpressions versions 1.3.4 dated 2022-10-10 and 1.3.5 dated 2022-11-07
statsExpressions-1.3.4/statsExpressions/tests/testthat/test-loop_execution.R |only statsExpressions-1.3.4/statsExpressions/tests/testthat/test-loop_execution_bayes.R |only statsExpressions-1.3.5/statsExpressions/DESCRIPTION | 18 statsExpressions-1.3.5/statsExpressions/MD5 | 123 - statsExpressions-1.3.5/statsExpressions/NAMESPACE | 11 statsExpressions-1.3.5/statsExpressions/NEWS.md | 6 statsExpressions-1.3.5/statsExpressions/R/centrality_description.R | 10 statsExpressions-1.3.5/statsExpressions/R/contingency_table.R | 7 statsExpressions-1.3.5/statsExpressions/R/corr_test.R | 142 - statsExpressions-1.3.5/statsExpressions/R/helpers_easystats.R | 124 - statsExpressions-1.3.5/statsExpressions/R/long_to_wide_converter.R | 8 statsExpressions-1.3.5/statsExpressions/R/meta_analysis.R | 21 statsExpressions-1.3.5/statsExpressions/R/one_sample_test.R | 13 statsExpressions-1.3.5/statsExpressions/R/oneway_anova.R | 63 statsExpressions-1.3.5/statsExpressions/R/pairwise_comparisons.R | 10 statsExpressions-1.3.5/statsExpressions/R/reexports.R | 36 statsExpressions-1.3.5/statsExpressions/R/statsExpressions-package.R | 58 statsExpressions-1.3.5/statsExpressions/R/switch_functions.R | 201 +- statsExpressions-1.3.5/statsExpressions/R/tidy_model_expressions.R | 212 +- statsExpressions-1.3.5/statsExpressions/R/two_sample_test.R | 14 statsExpressions-1.3.5/statsExpressions/README.md | 73 statsExpressions-1.3.5/statsExpressions/build/vignette.rds |binary statsExpressions-1.3.5/statsExpressions/inst/doc/statsExpressions.R | 1 statsExpressions-1.3.5/statsExpressions/inst/doc/statsExpressions.Rmd | 18 statsExpressions-1.3.5/statsExpressions/inst/doc/statsExpressions.html | 83 - statsExpressions-1.3.5/statsExpressions/inst/doc/stats_details.html | 191 +- statsExpressions-1.3.5/statsExpressions/man/centrality_description.Rd | 37 statsExpressions-1.3.5/statsExpressions/man/contingency_table.Rd | 11 statsExpressions-1.3.5/statsExpressions/man/corr_test.Rd | 24 statsExpressions-1.3.5/statsExpressions/man/figures/README-corr-1.png |binary statsExpressions-1.3.5/statsExpressions/man/figures/README-custom_expr-1.png |binary statsExpressions-1.3.5/statsExpressions/man/figures/README-t_one-1.png |binary statsExpressions-1.3.5/statsExpressions/man/figures/README-t_two-1.png |binary statsExpressions-1.3.5/statsExpressions/man/figures/README-t_two_paired1-1.png |binary statsExpressions-1.3.5/statsExpressions/man/long_to_wide_converter.Rd | 6 statsExpressions-1.3.5/statsExpressions/man/meta_analysis.Rd | 37 statsExpressions-1.3.5/statsExpressions/man/one_sample_test.Rd | 22 statsExpressions-1.3.5/statsExpressions/man/oneway_anova.Rd | 56 statsExpressions-1.3.5/statsExpressions/man/pairwise_comparisons.Rd | 6 statsExpressions-1.3.5/statsExpressions/man/reexports.Rd | 18 statsExpressions-1.3.5/statsExpressions/man/rmd-fragments/functionality.Rmd | 50 statsExpressions-1.3.5/statsExpressions/man/rmd-fragments/one_sample_test.Rmd | 12 statsExpressions-1.3.5/statsExpressions/man/two_sample_test.Rd | 11 statsExpressions-1.3.5/statsExpressions/tests/testthat/_snaps/centrality_description.md | 76 statsExpressions-1.3.5/statsExpressions/tests/testthat/_snaps/tidy_model_expressions.md | 12 statsExpressions-1.3.5/statsExpressions/tests/testthat/helper.R |only statsExpressions-1.3.5/statsExpressions/tests/testthat/test-centrality_description.R | 1 statsExpressions-1.3.5/statsExpressions/tests/testthat/test-contingency_table.R | 460 ++--- statsExpressions-1.3.5/statsExpressions/tests/testthat/test-corr_test.R | 282 +-- statsExpressions-1.3.5/statsExpressions/tests/testthat/test-long_to_wide_converter.R | 320 ++-- statsExpressions-1.3.5/statsExpressions/tests/testthat/test-meta_random_parametric.R | 1 statsExpressions-1.3.5/statsExpressions/tests/testthat/test-meta_random_robust.R | 2 statsExpressions-1.3.5/statsExpressions/tests/testthat/test-one_sample.R | 16 statsExpressions-1.3.5/statsExpressions/tests/testthat/test-one_two_sample_dataframes.R | 8 statsExpressions-1.3.5/statsExpressions/tests/testthat/test-oneway_anova_bayes.R | 6 statsExpressions-1.3.5/statsExpressions/tests/testthat/test-oneway_anova_nonparametric.R | 3 statsExpressions-1.3.5/statsExpressions/tests/testthat/test-oneway_anova_parametric.R | 284 +-- statsExpressions-1.3.5/statsExpressions/tests/testthat/test-oneway_anova_robust.R | 2 statsExpressions-1.3.5/statsExpressions/tests/testthat/test-pairwise_comparisons.R | 788 ++++------ statsExpressions-1.3.5/statsExpressions/tests/testthat/test-two_sample_bayes.R | 2 statsExpressions-1.3.5/statsExpressions/tests/testthat/test-two_sample_robust.R | 2 statsExpressions-1.3.5/statsExpressions/tests/testthat/test-z_meta_random_bayes.R | 3 statsExpressions-1.3.5/statsExpressions/vignettes/statsExpressions.Rmd | 18 statsExpressions-1.3.5/statsExpressions/vignettes/web_only/dataframe_outputs.Rmd | 3 64 files changed, 2009 insertions(+), 2013 deletions(-)
More information about statsExpressions at CRAN
Permanent link
Title: Categorical Bayesian Network Inference
Description: Structure learning and parameter estimation of discrete Bayesian networks using likelihood-based criteria. Exhaustive search for fixed node orders and stochastic search of optimal orders via simulated annealing algorithm are implemented.
Author: Nikolay Balov [aut, cre] <doi:10.1214/13-EJS802>),
Peter Salzman [aut]
Maintainer: Nikolay Balov <nhbalov@gmail.com>
Diff between catnet versions 1.15.7 dated 2020-03-10 and 1.16.1 dated 2022-11-07
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- build |only inst/doc/catnet.pdf |binary src/catnet_rexport.h | 11 +++++++++-- src/rcatnet.cpp | 18 +++++++++--------- 6 files changed, 27 insertions(+), 19 deletions(-)
Title: Spatial Analysis of Field Trials with Splines
Description: Analysis of field trial experiments by modelling spatial trends using two-dimensional Penalised spline (P-spline) models.
Author: Maria Xose Rodriguez-Alvarez [aut, cre],
Martin Boer [aut],
Paul Eilers [aut],
Fred van Eeuwijk [ctb]
Maintainer: Maria Xose Rodriguez-Alvarez <mxrodriguez@uvigo.es>
Diff between SpATS versions 1.0-17 dated 2022-06-07 and 1.0-18 dated 2022-11-07
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 5 ++++- R/construct.genotype.prediction.matrix.R | 6 +++--- man/SpATS-package.Rd | 4 ++-- 5 files changed, 17 insertions(+), 14 deletions(-)
Title: Extract Remote Sensing Vegetation Phenology
Description: The merits of 'TIMESAT' and 'phenopix' are adopted. Besides, a simple and
growing season dividing method and a practical snow elimination method
based on Whittaker were proposed. 7 curve fitting methods and 4 phenology
extraction methods were provided. Parameters boundary are considered for
every curve fitting methods according to their ecological meaning.
And 'optimx' is used to select best optimization method for different
curve fitting methods.
Reference:
Kong, D., (2020). R package: A state-of-the-art Vegetation Phenology extraction
package, phenofit version 0.3.1, <doi:10.5281/zenodo.5150204>;
Kong, D., Zhang, Y., Wang, D., Chen, J., & Gu, X. (2020). Photoperiod Explains
the Asynchronization Between Vegetation Carbon Phenology and Vegetation Greenness
Phenology. Journal of Geophysical Research: Biogeosciences, 125(8), e2020JG005636.
<doi:10.1029/2020JG005636>;
Kong, D., Zhang, Y., Gu, X., & Wang, D. (2019). A robust method for reconstructing
global MODIS EVI ti [...truncated...]
Author: Dongdong Kong [aut, cre],
Mingzhong Xiao [aut],
Yongqiang Zhang [aut],
Xihui Gu [aut],
Jianjian Cui [aut]
Maintainer: Dongdong Kong <kongdd.sysu@gmail.com>
Diff between phenofit versions 0.3.6 dated 2022-11-03 and 0.3.7 dated 2022-11-07
DESCRIPTION | 6 MD5 | 48 +-- R/D.R | 340 ++++++++++++------------- R/PhenoDeriv.R | 216 +++++++-------- R/PhenoTrs.R | 316 +++++++++++------------ R/curvefit.R | 216 +++++++-------- R/curvefits_LocalModel.R | 482 +++++++++++++++++------------------ R/doubleLogistics-init_param.R | 500 ++++++++++++++++++------------------- R/optim_pheno.R | 320 +++++++++++------------ R/roughFit.R | 330 ++++++++++++------------ R/season_input.R | 306 +++++++++++----------- R/tools.R | 296 ++++++++++----------- R/tools_plyr.R | 22 - inst/doc/phenofit-procedures.html | 3 inst/doc/phenofit_CA-NS6.html | 2 man/PhenoDeriv.Rd | 92 +++--- man/PhenoGu.Rd | 146 +++++----- man/PhenoKl.Rd | 128 ++++----- man/PhenoTrs.Rd | 140 +++++----- man/brks2rfit.Rd | 56 ++-- man/curvefit0.Rd | 38 +- man/curvefits_LocalModel.Rd | 4 man/cutoff.Rd | 52 +-- man/roughFit.Rd | 390 ++++++++++++++-------------- tests/testthat/test-PhenoExtract.R | 134 ++++----- 25 files changed, 2292 insertions(+), 2291 deletions(-)
Title: Process and Analyse Data from m-Path Sense
Description: Overcomes one of the major challenges in mobile (passive) sensing, namely
being able to pre-process the raw data that comes from a mobile sensing app,
specifically "m-Path Sense" <https://m-path.io>. The main task of 'mpathsenser' is
therefore to read "m-Path Sense" JSON files into a database and provide several
convenience functions to aid in data processing.
Author: Koen Niemeijer [aut, cre] ,
Kristof Meers [ctb] ,
KU Leuven [cph, fnd]
Maintainer: Koen Niemeijer <koen.niemeijer@kuleuven.be>
Diff between mpathsenser versions 1.1.0 dated 2022-10-06 and 1.1.1 dated 2022-11-07
mpathsenser-1.1.0/mpathsenser/R/functions.R |only mpathsenser-1.1.0/mpathsenser/R/globals.R |only mpathsenser-1.1.0/mpathsenser/inst/testdata/broken/broken1-1.json |only mpathsenser-1.1.0/mpathsenser/inst/testdata/broken/broken9.json |only mpathsenser-1.1.0/mpathsenser/man/get_app_usage.Rd |only mpathsenser-1.1.0/mpathsenser/man/get_installed_apps.Rd |only mpathsenser-1.1.0/mpathsenser/tests/testthat/test-functions.R |only mpathsenser-1.1.0/mpathsenser/tests/testthat/test-import-functions.R |only mpathsenser-1.1.1/mpathsenser/DESCRIPTION | 12 mpathsenser-1.1.1/mpathsenser/MD5 | 109 mpathsenser-1.1.1/mpathsenser/NAMESPACE | 40 mpathsenser-1.1.1/mpathsenser/NEWS.md | 49 mpathsenser-1.1.1/mpathsenser/R/coverage.R |only mpathsenser-1.1.1/mpathsenser/R/database.R | 780 +++--- mpathsenser-1.1.1/mpathsenser/R/import.R |only mpathsenser-1.1.1/mpathsenser/R/import_functions.R | 1199 ++++------ mpathsenser-1.1.1/mpathsenser/R/input_checks.R |only mpathsenser-1.1.1/mpathsenser/R/linking.R | 568 +--- mpathsenser-1.1.1/mpathsenser/R/location_functions.R | 315 +- mpathsenser-1.1.1/mpathsenser/R/mpathsenser-package.R | 35 mpathsenser-1.1.1/mpathsenser/R/sensor_functions.R | 744 +++--- mpathsenser-1.1.1/mpathsenser/R/stats.R | 434 +-- mpathsenser-1.1.1/mpathsenser/R/utils.R | 911 +++---- mpathsenser-1.1.1/mpathsenser/R/zzz.R |only mpathsenser-1.1.1/mpathsenser/build/vignette.rds |binary mpathsenser-1.1.1/mpathsenser/inst/doc/mpathsenser.R | 39 mpathsenser-1.1.1/mpathsenser/inst/doc/mpathsenser.Rmd | 197 - mpathsenser-1.1.1/mpathsenser/inst/doc/mpathsenser.html | 82 mpathsenser-1.1.1/mpathsenser/inst/testdata/broken/broken8.json | 2 mpathsenser-1.1.1/mpathsenser/inst/testdata/broken/empty.json |only mpathsenser-1.1.1/mpathsenser/inst/testdata/broken/empty2.json |only mpathsenser-1.1.1/mpathsenser/inst/testdata/broken/empty3.json |only mpathsenser-1.1.1/mpathsenser/inst/testdata/broken/illegal_ascii.json |only mpathsenser-1.1.1/mpathsenser/inst/testdata/broken/illegal_ascii2.json |only mpathsenser-1.1.1/mpathsenser/inst/testdata/broken/nul_test.json |only mpathsenser-1.1.1/mpathsenser/man/activity_duration.Rd | 1 mpathsenser-1.1.1/mpathsenser/man/add_gaps.Rd | 174 - mpathsenser-1.1.1/mpathsenser/man/app_usage.Rd |only mpathsenser-1.1.1/mpathsenser/man/bin_data.Rd | 224 - mpathsenser-1.1.1/mpathsenser/man/copy_db.Rd | 21 mpathsenser-1.1.1/mpathsenser/man/coverage.Rd | 11 mpathsenser-1.1.1/mpathsenser/man/decrypt_gps.Rd | 8 mpathsenser-1.1.1/mpathsenser/man/fix_jsons.Rd | 50 mpathsenser-1.1.1/mpathsenser/man/freq.Rd | 2 mpathsenser-1.1.1/mpathsenser/man/geocode_rev.Rd | 14 mpathsenser-1.1.1/mpathsenser/man/get_data.Rd | 8 mpathsenser-1.1.1/mpathsenser/man/identify_gaps.Rd | 53 mpathsenser-1.1.1/mpathsenser/man/import.Rd | 76 mpathsenser-1.1.1/mpathsenser/man/installed_apps.Rd |only mpathsenser-1.1.1/mpathsenser/man/moving_average.Rd | 24 mpathsenser-1.1.1/mpathsenser/man/n_screen_on.Rd | 1 mpathsenser-1.1.1/mpathsenser/man/n_screen_unlocks.Rd | 1 mpathsenser-1.1.1/mpathsenser/man/plot.coverage.Rd |only mpathsenser-1.1.1/mpathsenser/man/screen_duration.Rd | 1 mpathsenser-1.1.1/mpathsenser/man/step_count.Rd | 1 mpathsenser-1.1.1/mpathsenser/man/test_jsons.Rd | 31 mpathsenser-1.1.1/mpathsenser/man/unzip_data.Rd | 22 mpathsenser-1.1.1/mpathsenser/tests/testthat/test-coverage.R |only mpathsenser-1.1.1/mpathsenser/tests/testthat/test-data.R | 960 ++++---- mpathsenser-1.1.1/mpathsenser/tests/testthat/test-database.R | 508 ++-- mpathsenser-1.1.1/mpathsenser/tests/testthat/test-import.R |only mpathsenser-1.1.1/mpathsenser/tests/testthat/test-import_functions.R |only mpathsenser-1.1.1/mpathsenser/tests/testthat/test-input_checks.R |only mpathsenser-1.1.1/mpathsenser/tests/testthat/test-linking.R | 337 ++ mpathsenser-1.1.1/mpathsenser/tests/testthat/test-lint.R |only mpathsenser-1.1.1/mpathsenser/tests/testthat/test-location_functions.R |only mpathsenser-1.1.1/mpathsenser/tests/testthat/test-sensor_functions.R | 407 ++- mpathsenser-1.1.1/mpathsenser/tests/testthat/test-utils.R | 302 +- mpathsenser-1.1.1/mpathsenser/vignettes/mpathsenser.Rmd | 197 - 69 files changed, 4938 insertions(+), 4012 deletions(-)
Title: Analysis of Massive SNP Arrays
Description: Easy-to-use, efficient, flexible and scalable tools for analyzing
massive SNP arrays. Privé et al. (2018) <doi:10.1093/bioinformatics/bty185>.
Author: Florian Prive [aut, cre],
Michael Blum [ths],
Hugues Aschard [ths],
Bjarni Johann Vilhjalmsson [ths]
Maintainer: Florian Prive <florian.prive.21@gmail.com>
Diff between bigsnpr versions 1.11.4 dated 2022-10-21 and 1.11.6 dated 2022-11-07
DESCRIPTION | 8 +++---- MD5 | 14 ++++++------ NEWS.md | 4 +++ R/bed-projectPCA.R | 17 ++++++++------- R/external-software.R | 41 ++++++++++++++++++++++++-------------- R/match-alleles.R | 3 -- build/partial.rdb |binary tests/testthat/test-4-manhattan.R | 22 ++++++++++++++------ 8 files changed, 67 insertions(+), 42 deletions(-)
Title: Biological Entity Dictionary (BED)
Description: An interface for the 'Neo4j' database providing
mapping between different identifiers of biological entities.
This Biological Entity Dictionary (BED)
has been developed to address three main challenges.
The first one is related to the completeness of identifier mappings.
Indeed, direct mapping information provided by the different systems
are not always complete and can be enriched by mappings provided by other
resources.
More interestingly, direct mappings not identified by any of these
resources can be indirectly inferred by using mappings to a third reference.
For example, many human Ensembl gene ID are not directly mapped to any
Entrez gene ID but such mappings can be inferred using respective mappings
to HGNC ID. The second challenge is related to the mapping of deprecated
identifiers. Indeed, entity identifiers can change from one resource
release to another. The identifier history is provided by some resources,
such as Ensembl or the NCBI, but it is generally not used by mapping [...truncated...]
Author: Patrice Godard [aut, cre, cph]
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Diff between BED versions 1.4.8 dated 2022-04-26 and 1.4.11 dated 2022-11-07
DESCRIPTION | 12 MD5 | 32 R/BEIDList.R | 15 R/beidsModule.R | 7 R/dumpUniprotDb.R | 4 R/findBeids.R | 4 build/vignette.rds |binary inst/doc/BED.R | 17 inst/doc/BED.Rmd | 39 inst/doc/BED.html | 6287 +++++++++++++++++++++---------------------- inst/pkgdown.yml |only man/beidsServer.Rd | 4 man/dumpNcbiDb.Rd | 4 man/dumpUniprotDb.Rd | 10 man/focusOnScope.BEIDList.Rd | 9 man/guessIdScope.Rd | 4 vignettes/BED.Rmd | 39 vignettes/img |only 18 files changed, 3337 insertions(+), 3150 deletions(-)
Title: Spatial Point Patterns Analysis
Description: Perform first- and second-order multi-scale analyses derived from Ripley K-function (Ripley B. D. (1977) <doi:10.1111/j.2517-6161.1977.tb01615.x>), for univariate,
multivariate and marked mapped data in rectangular, circular or irregular shaped sampling windows, with tests of
statistical significance based on Monte Carlo simulations.
Author: Raphael Pelissier [aut], Francois Goreaud [aut], Philippe Verley [ctb, cre]
Maintainer: Raphael Pelissier <raphael.pelissier@ird.fr>
Diff between ads versions 1.5-7 dated 2022-10-19 and 1.5-8 dated 2022-11-07
DESCRIPTION | 8 +-- MD5 | 8 +-- src/adssub.c | 2 src/triangulate.c | 135 +++++++++++++----------------------------------------- src/triangulate.h | 4 + 5 files changed, 46 insertions(+), 111 deletions(-)
Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is
a socket library providing high-performance scalability protocols,
implementing a cross-platform standard for messaging and communications.
Serves as a concurrency framework for building distributed applications,
utilising 'Aio' objects which automatically resolve upon completion of
asynchronous operations.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between nanonext versions 0.6.0 dated 2022-10-09 and 0.7.0 dated 2022-11-07
nanonext-0.6.0/nanonext/inst/nng-722bf46.tar.xz |only nanonext-0.7.0/nanonext/DESCRIPTION | 8 nanonext-0.7.0/nanonext/MD5 | 115 +++---- nanonext-0.7.0/nanonext/NAMESPACE | 1 nanonext-0.7.0/nanonext/NEWS.md | 36 ++ nanonext-0.7.0/nanonext/R/aio.R | 13 nanonext-0.7.0/nanonext/R/context.R | 42 +- nanonext-0.7.0/nanonext/R/docs.R | 12 nanonext-0.7.0/nanonext/R/listdial.R | 122 +------ nanonext-0.7.0/nanonext/R/messenger.R | 7 nanonext-0.7.0/nanonext/R/nano.R | 266 +++++++++++----- nanonext-0.7.0/nanonext/R/nanonext-package.R | 23 - nanonext-0.7.0/nanonext/R/ncurl.R | 42 -- nanonext-0.7.0/nanonext/R/opts.R | 16 nanonext-0.7.0/nanonext/R/sendrecv.R | 21 - nanonext-0.7.0/nanonext/R/socket.R | 19 - nanonext-0.7.0/nanonext/R/stream.R | 23 - nanonext-0.7.0/nanonext/R/tls.R | 5 nanonext-0.7.0/nanonext/R/utils.R | 139 +------- nanonext-0.7.0/nanonext/README.md | 119 +++---- nanonext-0.7.0/nanonext/configure | 2 nanonext-0.7.0/nanonext/configure.ucrt | 2 nanonext-0.7.0/nanonext/inst/nng-5385b78.tar.xz |only nanonext-0.7.0/nanonext/man/base64enc.Rd | 5 nanonext-0.7.0/nanonext/man/close.Rd | 18 - nanonext-0.7.0/nanonext/man/context.Rd | 12 nanonext-0.7.0/nanonext/man/device.Rd | 4 nanonext-0.7.0/nanonext/man/dial.Rd | 19 - nanonext-0.7.0/nanonext/man/is_aio.Rd | 3 nanonext-0.7.0/nanonext/man/is_error_value.Rd | 30 - nanonext-0.7.0/nanonext/man/listen.Rd | 19 - nanonext-0.7.0/nanonext/man/nano.Rd | 29 + nanonext-0.7.0/nanonext/man/nano_init.Rd | 43 -- nanonext-0.7.0/nanonext/man/nanonext-package.Rd | 17 - nanonext-0.7.0/nanonext/man/ncurl.Rd | 24 - nanonext-0.7.0/nanonext/man/nng_error.Rd | 36 -- nanonext-0.7.0/nanonext/man/opts.Rd | 5 nanonext-0.7.0/nanonext/man/protocols.Rd | 2 nanonext-0.7.0/nanonext/man/recv.Rd | 7 nanonext-0.7.0/nanonext/man/recv_aio.Rd | 7 nanonext-0.7.0/nanonext/man/reply.Rd | 22 - nanonext-0.7.0/nanonext/man/request.Rd | 17 - nanonext-0.7.0/nanonext/man/send.Rd | 9 nanonext-0.7.0/nanonext/man/send_aio.Rd | 3 nanonext-0.7.0/nanonext/man/setopt.Rd | 4 nanonext-0.7.0/nanonext/man/sha256.Rd | 5 nanonext-0.7.0/nanonext/man/start.Rd | 12 nanonext-0.7.0/nanonext/man/status_code.Rd |only nanonext-0.7.0/nanonext/man/stream.Rd | 6 nanonext-0.7.0/nanonext/man/transports.Rd | 2 nanonext-0.7.0/nanonext/src/Makevars.win | 6 nanonext-0.7.0/nanonext/src/aio.c | 296 +++++++++--------- nanonext-0.7.0/nanonext/src/core.c | 325 +++++++++---------- nanonext-0.7.0/nanonext/src/init.c | 42 +- nanonext-0.7.0/nanonext/src/nanonext.h | 18 - nanonext-0.7.0/nanonext/src/protocol.c | 9 nanonext-0.7.0/nanonext/src/thread.c | 6 nanonext-0.7.0/nanonext/src/tls.c | 37 +- nanonext-0.7.0/nanonext/src/utils.c | 170 ++++++---- nanonext-0.7.0/nanonext/tests/tests.R | 392 +++++++++++++++--------- 60 files changed, 1375 insertions(+), 1319 deletions(-)
Title: Auto Stats
Description: Automatically do statistical exploration. Create formulas using 'tidyselect' syntax, and then determine cross-validated model accuracy and variable contributions using 'glm' and 'xgboost'. Contains additional helper functions to create and modify formulas. Has a flagship function to quickly determine relationships between categorical and continuous variables in the data set.
Author: Harrison Tietze [aut, cre]
Maintainer: Harrison Tietze <harrison4192@gmail.com>
Diff between autostats versions 0.3.1 dated 2022-08-19 and 0.4.0 dated 2022-11-07
autostats-0.3.1/autostats/inst/doc/tidyModels.R |only autostats-0.3.1/autostats/inst/doc/tidyModels.Rmd |only autostats-0.3.1/autostats/inst/doc/tidyModels.html |only autostats-0.3.1/autostats/man/tidy_agtboost.Rd |only autostats-0.3.1/autostats/man/tidy_foci.Rd |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-3_a688c7d01c37c06e82d315aa255fff31.RData |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-3_a688c7d01c37c06e82d315aa255fff31.rdb |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-3_a688c7d01c37c06e82d315aa255fff31.rdx |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-4_fbbb6b488addb7c760e1cf1d0689e53e.RData |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-4_fbbb6b488addb7c760e1cf1d0689e53e.rdb |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-4_fbbb6b488addb7c760e1cf1d0689e53e.rdx |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-5_0bb6e0382b8ac445938ffc63ed5b28ca.RData |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-5_0bb6e0382b8ac445938ffc63ed5b28ca.rdb |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-5_0bb6e0382b8ac445938ffc63ed5b28ca.rdx |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-6_fbee9f9a7b5cf3fbdeed5b27bb66dd95.RData |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-6_fbee9f9a7b5cf3fbdeed5b27bb66dd95.rdb |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-6_fbee9f9a7b5cf3fbdeed5b27bb66dd95.rdx |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-8_b992a057e95eabfc497d268ef0f2a177.RData |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-8_b992a057e95eabfc497d268ef0f2a177.rdb |only autostats-0.3.1/autostats/vignettes/autostats_cache/html/unnamed-chunk-8_b992a057e95eabfc497d268ef0f2a177.rdx |only autostats-0.3.1/autostats/vignettes/tidyModels.Rmd |only autostats-0.4.0/autostats/DESCRIPTION | 19 autostats-0.4.0/autostats/MD5 | 87 +-- autostats-0.4.0/autostats/NAMESPACE | 4 autostats-0.4.0/autostats/R/determine_pred_type.R | 2 autostats-0.4.0/autostats/R/eval_preds.R | 54 +- autostats-0.4.0/autostats/R/get_params.R | 15 autostats-0.4.0/autostats/R/tidy_agtboost.R | 110 ++-- autostats-0.4.0/autostats/R/tidy_foci.R | 124 ++-- autostats-0.4.0/autostats/R/tidy_formula.R | 5 autostats-0.4.0/autostats/R/tidy_predict.R | 102 +++- autostats-0.4.0/autostats/R/tidy_shap.R | 43 + autostats-0.4.0/autostats/R/tidy_xgboost.R | 254 ++++++---- autostats-0.4.0/autostats/R/tidy_xgboost_lgb.R |only autostats-0.4.0/autostats/R/tune_xgboost.R | 21 autostats-0.4.0/autostats/R/visualize_model.R | 6 autostats-0.4.0/autostats/build/vignette.rds |binary autostats-0.4.0/autostats/inst/doc/autostats.html | 44 - 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Title: Create Ternary and Holdridge Plots
Description: Plots ternary diagrams (simplex plots / Gibbs triangles) and
Holdridge life zone plots <doi:10.1126/science.105.2727.367> using the
standard graphics functions.
An alternative to 'ggtern', which uses the 'ggplot2' family of plotting
functions.
Includes a 'Shiny' user interface for point-and-click ternary plotting.
Author: Martin R. Smith [aut, cre, cph]
,
Lilian Sanselme [ctb]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Ternary versions 2.1.1 dated 2022-10-04 and 2.1.2 dated 2022-11-07
DESCRIPTION | 6 MD5 | 36 +-- NEWS.md | 4 R/TernaryPlot.R | 4 R/helpers.R | 33 +-- README.md | 17 - inst/TernaryApp/tests/shinytest/plotOptions-expected/001.png |binary inst/TernaryApp/tests/shinytest/plotOptions-expected/002.png |binary inst/TernaryApp/tests/shinytest/plotOptions-expected/003.png |binary inst/TernaryApp/tests/shinytest/plotOptions-expected/004.png |binary inst/doc/Holdridge.html | 115 +++++----- inst/doc/Ternary.html | 117 +++++------ inst/doc/interpolation.html | 115 +++++----- inst/doc/new-users.html | 115 +++++----- man/HoldridgePlot.Rd | 4 man/TernaryPlot.Rd | 4 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/ternary/axisstyle.svg | 28 +- tests/testthat/test-ternary.R | 1 19 files changed, 295 insertions(+), 304 deletions(-)
More information about spatstat.model at CRAN
Permanent link
Title: Classes and Methods for Spatial Data
Description: Classes and methods for spatial
data; the classes document where the spatial location information
resides, for 2D or 3D data. Utility functions are provided, e.g. for
plotting data as maps, spatial selection, as well as methods for
retrieving coordinates, for subsetting, print, summary, etc.
Author: Edzer Pebesma [aut, cre],
Roger Bivand [aut],
Barry Rowlingson [ctb],
Virgilio Gomez-Rubio [ctb],
Robert Hijmans [ctb],
Michael Sumner [ctb],
Don MacQueen [ctb],
Jim Lemon [ctb],
Finn Lindgren [ctb],
Josh O'Brien [ctb],
Joseph O'Rourke [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sp versions 1.5-0 dated 2022-06-05 and 1.5-1 dated 2022-11-07
DESCRIPTION | 6 +- MD5 | 44 +++++++++--------- R/AAA.R | 8 +-- R/CRS-methods.R | 11 ++++ R/projected.R | 70 +++++++++-------------------- build/vignette.rds |binary inst/doc/CRS_warnings.html | 10 ++-- inst/doc/csdacm.R | 57 ++++++++++++------------ inst/doc/csdacm.Rnw | 19 ++++---- inst/doc/csdacm.pdf |binary inst/doc/intro_sp.pdf |binary inst/doc/over.R | 106 ++++++++++++++++++++++++++++----------------- inst/doc/over.Rnw | 48 ++++++++++++++++---- inst/doc/over.pdf |binary inst/include/sp.h | 4 - man/disaggregate.Rd | 2 man/gridlines.Rd | 22 ++++++--- man/over.Rd | 2 src/sp.h | 4 - tests/agg.R | 2 tests/over2.R | 2 vignettes/csdacm.Rnw | 19 ++++---- vignettes/over.Rnw | 48 ++++++++++++++++---- 23 files changed, 292 insertions(+), 192 deletions(-)
Title: Tracking Geo Code Change of Regional Granularity in Norway
Description: Regional granularity levels in Norway which are depicted by different codes,
have undergone several changes over the years.
Identifying when codes have changed and how many changes have taken place
can be troublesome. This package will help to identify these changes and when the changes
have taken place. One of the limitation of this package is that it is heavily depending
on the codes available from SSB website <https://data.ssb.no/api/klass/v1/api-guide.html>.
Author: Yusman Kamaleri [aut, cre]
Maintainer: Yusman Kamaleri <ybkamaleri@gmail.com>
Diff between norgeo versions 2.1.1 dated 2022-10-21 and 2.1.2 dated 2022-11-07
norgeo-2.1.1/norgeo/tests/fixtures/change-error.yml |only norgeo-2.1.1/norgeo/tests/fixtures/change-retry.yml |only norgeo-2.1.1/norgeo/tests/fixtures/codes-fromto-error.yml |only norgeo-2.1.1/norgeo/tests/fixtures/codes-fromto-retry.yml |only norgeo-2.1.1/norgeo/tests/fixtures/correspond-error.yml |only norgeo-2.1.1/norgeo/tests/fixtures/correspond-retry.yml |only norgeo-2.1.2/norgeo/DESCRIPTION | 9 norgeo-2.1.2/norgeo/LICENSE | 4 norgeo-2.1.2/norgeo/MD5 | 86 - norgeo-2.1.2/norgeo/NEWS.md | 208 +- norgeo-2.1.2/norgeo/R/cast-geo.R | 548 +++--- norgeo-2.1.2/norgeo/R/data.R | 22 norgeo-2.1.2/norgeo/R/env.R | 32 norgeo-2.1.2/norgeo/R/get-change.R | 524 +++--- norgeo-2.1.2/norgeo/R/get-code.R | 230 +- norgeo-2.1.2/norgeo/R/get-correspond.R | 226 +- norgeo-2.1.2/norgeo/R/globals.R | 58 norgeo-2.1.2/norgeo/R/norgeo.R | 12 norgeo-2.1.2/norgeo/R/save_geo.R | 140 - norgeo-2.1.2/norgeo/R/track-change.R | 292 +-- norgeo-2.1.2/norgeo/R/track-merge.R | 46 norgeo-2.1.2/norgeo/R/track-split.R | 46 norgeo-2.1.2/norgeo/R/utils.R | 100 - norgeo-2.1.2/norgeo/R/zzz.R | 8 norgeo-2.1.2/norgeo/README.md | 130 - norgeo-2.1.2/norgeo/build/vignette.rds |binary norgeo-2.1.2/norgeo/inst/doc/use-api.R | 36 norgeo-2.1.2/norgeo/inst/doc/use-api.Rmd | 118 - norgeo-2.1.2/norgeo/inst/doc/use-api.html | 789 +++++----- norgeo-2.1.2/norgeo/inst/test-data/cast_2020.rds |binary norgeo-2.1.2/norgeo/inst/test-data/change-dt.rds |binary norgeo-2.1.2/norgeo/inst/test-data/dtCorres.rds |binary norgeo-2.1.2/norgeo/inst/test-data/merge_2018_2020.rds |binary norgeo-2.1.2/norgeo/inst/test-data/split_2018_2020.rds |binary norgeo-2.1.2/norgeo/inst/test-data/trackChangeKomm_2017_2020.rds |binary norgeo-2.1.2/norgeo/tests/fixtures/change.yml | 216 +- norgeo-2.1.2/norgeo/tests/fixtures/codes-fromto.yml | 120 - norgeo-2.1.2/norgeo/tests/fixtures/correspond.yml | 753 ++++----- norgeo-2.1.2/norgeo/tests/testthat.R | 8 norgeo-2.1.2/norgeo/tests/testthat/setup-norgeo.R | 35 norgeo-2.1.2/norgeo/tests/testthat/test-Save_file.R | 14 norgeo-2.1.2/norgeo/tests/testthat/test-cast-geo.R | 12 norgeo-2.1.2/norgeo/tests/testthat/test-get-change.R | 76 norgeo-2.1.2/norgeo/tests/testthat/test-get-code.R | 42 norgeo-2.1.2/norgeo/tests/testthat/test-get-correspond.R | 32 norgeo-2.1.2/norgeo/tests/testthat/test-track-change.R | 34 norgeo-2.1.2/norgeo/vignettes/use-api.Rmd | 118 - 47 files changed, 2547 insertions(+), 2577 deletions(-)
Title: Hyperband for 'mlr3'
Description: Implements hyperband method for hyperparameter
tuning. Various termination criteria can be set and combined. The
class 'AutoTuner' provides a convenient way to perform nested
resampling in combination with 'mlr3'. The hyperband algorithm was
proposed by Lisha Li, Kevin Jamieson, Giulia DeSalvo, Afshin
Rostamizadeh and Ameet Talwalkar (2018) <arXiv:1603.06560>.
Author: Marc Becker [aut, cre] ,
Sebastian Gruber [aut] ,
Jakob Richter [aut] ,
Julia Moosbauer [aut] ,
Bernd Bischl [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3hyperband versions 0.4.2 dated 2022-08-25 and 0.4.3 dated 2022-11-07
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/TunerHyperband.R | 7 +++---- R/TunerSuccessiveHalving.R | 5 ++--- man/mlr_optimizers_hyperband.Rd | 7 +++++-- man/mlr_optimizers_successive_halving.Rd | 7 +++++-- man/mlr_tuners_hyperband.Rd | 7 +++---- man/mlr_tuners_successive_halving.Rd | 5 ++--- 9 files changed, 36 insertions(+), 30 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis. See Hunter, Handcock, Butts, Goodreau, and Morris (2008) <doi:10.18637/jss.v024.i03> and Krivitsky, Hunter, Morris, and Klumb (2021) <arXiv:2106.04997>.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre] ,
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb],
Skye Bender-deMoll [ctb],
Chad Klumb [ctb],
Michal Bojanowski [ctb] ,
[...truncated...]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm versions 4.2.3 dated 2022-10-02 and 4.3.1 dated 2022-11-07
ergm-4.2.3/ergm/R/ergm.robmon.R |only ergm-4.2.3/ergm/man/B-ergmTerm.Rd |only ergm-4.2.3/ergm/man/BDStratTNT-ergmProposal.Rd |only ergm-4.2.3/ergm/man/Bernoulli-ergmReference.Rd |only ergm-4.2.3/ergm/man/CondB1Degree-ergmProposal.Rd |only ergm-4.2.3/ergm/man/CondB2Degree-ergmProposal.Rd |only ergm-4.2.3/ergm/man/CondDegree-ergmProposal.Rd |only ergm-4.2.3/ergm/man/CondDegreeDist-ergmProposal.Rd |only ergm-4.2.3/ergm/man/CondDegreeMix-ergmProposal.Rd |only ergm-4.2.3/ergm/man/CondInDegree-ergmProposal.Rd |only ergm-4.2.3/ergm/man/CondInDegreeDist-ergmProposal.Rd |only ergm-4.2.3/ergm/man/CondOutDegree-ergmProposal.Rd |only ergm-4.2.3/ergm/man/CondOutDegreeDist-ergmProposal.Rd |only ergm-4.2.3/ergm/man/ConstantEdges-ergmProposal.Rd |only ergm-4.2.3/ergm/man/Curve-ergmTerm.Rd |only ergm-4.2.3/ergm/man/DiscUnif-ergmProposal.Rd |only ergm-4.2.3/ergm/man/DiscUnif-ergmReference.Rd |only ergm-4.2.3/ergm/man/DiscUnif2-ergmProposal.Rd |only ergm-4.2.3/ergm/man/DiscUnifNonObserved-ergmProposal.Rd |only ergm-4.2.3/ergm/man/DistRLE-ergmProposal.Rd |only ergm-4.2.3/ergm/man/Dyads-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/Exp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/F-ergmTerm.Rd |only ergm-4.2.3/ergm/man/HammingConstantEdges-ergmProposal.Rd |only ergm-4.2.3/ergm/man/HammingTNT-ergmProposal.Rd |only ergm-4.2.3/ergm/man/Label-ergmTerm.Rd |only ergm-4.2.3/ergm/man/Log-ergmTerm.Rd |only ergm-4.2.3/ergm/man/NodematchFilter-ergmTerm.Rd |only ergm-4.2.3/ergm/man/Offset-ergmTerm.Rd |only ergm-4.2.3/ergm/man/Prod-ergmTerm.Rd |only ergm-4.2.3/ergm/man/S-ergmTerm.Rd |only ergm-4.2.3/ergm/man/StdNormal-ergmProposal.Rd |only ergm-4.2.3/ergm/man/StdNormal-ergmReference.Rd |only ergm-4.2.3/ergm/man/Sum-operator-ergmTerm.Rd |only ergm-4.2.3/ergm/man/Symmetrize-ergmTerm.Rd |only ergm-4.2.3/ergm/man/TNT-ergmProposal.Rd |only ergm-4.2.3/ergm/man/Unif-ergmProposal.Rd |only ergm-4.2.3/ergm/man/Unif-ergmReference.Rd |only ergm-4.2.3/ergm/man/UnifNonObserved-ergmProposal.Rd |only ergm-4.2.3/ergm/man/absdiff-ergmTerm.Rd |only ergm-4.2.3/ergm/man/absdiffcat-ergmTerm.Rd |only ergm-4.2.3/ergm/man/altkstar-ergmTerm.Rd |only ergm-4.2.3/ergm/man/asymmetric-ergmTerm.Rd |only ergm-4.2.3/ergm/man/atleast-ergmTerm.Rd |only ergm-4.2.3/ergm/man/atmost-ergmTerm.Rd |only ergm-4.2.3/ergm/man/attrcov-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b1concurrent-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b1cov-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b1degrange-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b1degree-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b1degrees-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/b1dsp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b1factor-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b1mindegree-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b1nodematch-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b1sociality-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b1star-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b1starmix-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b1twostar-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b2concurrent-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b2cov-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b2degrange-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b2degree-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b2degrees-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/b2dsp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b2factor-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b2mindegree-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b2nodematch-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b2sociality-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b2star-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b2starmix-ergmTerm.Rd |only ergm-4.2.3/ergm/man/b2twostar-ergmTerm.Rd |only ergm-4.2.3/ergm/man/balance-ergmTerm.Rd |only ergm-4.2.3/ergm/man/bd-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/blockdiag-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/blocks-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/coincidence-ergmTerm.Rd |only ergm-4.2.3/ergm/man/concurrent-ergmTerm.Rd |only ergm-4.2.3/ergm/man/concurrentties-ergmTerm.Rd |only ergm-4.2.3/ergm/man/ctriple-ergmTerm.Rd |only ergm-4.2.3/ergm/man/cycle-ergmTerm.Rd |only ergm-4.2.3/ergm/man/cyclicalties-ergmTerm.Rd |only ergm-4.2.3/ergm/man/cyclicalweights-ergmTerm.Rd |only ergm-4.2.3/ergm/man/ddsp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/degcor-ergmTerm.Rd |only ergm-4.2.3/ergm/man/degcrossprod-ergmTerm.Rd |only ergm-4.2.3/ergm/man/degrange-ergmTerm.Rd |only ergm-4.2.3/ergm/man/degree-ergmTerm.Rd |only ergm-4.2.3/ergm/man/degree1.5-ergmTerm.Rd |only ergm-4.2.3/ergm/man/degreedist-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/degrees-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/density-ergmTerm.Rd |only ergm-4.2.3/ergm/man/desp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/dgwdsp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/dgwesp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/dgwnsp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/diff-ergmTerm.Rd |only ergm-4.2.3/ergm/man/dnsp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/dot-dyads-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/dsp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/dyadcov-ergmTerm.Rd |only ergm-4.2.3/ergm/man/dyadnoise-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/dyadnoise-ergmProposal.Rd |only ergm-4.2.3/ergm/man/dyadnoiseTNT-ergmProposal.Rd |only ergm-4.2.3/ergm/man/edgecov-ergmTerm.Rd |only ergm-4.2.3/ergm/man/edges-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/edges-ergmTerm.Rd |only ergm-4.2.3/ergm/man/egocentric-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/equalto-ergmTerm.Rd |only ergm-4.2.3/ergm/man/esp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/fixallbut-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/fixedas-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/greaterthan-ergmTerm.Rd |only ergm-4.2.3/ergm/man/gwb1degree-ergmTerm.Rd |only ergm-4.2.3/ergm/man/gwb1dsp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/gwb2degree-ergmTerm.Rd |only ergm-4.2.3/ergm/man/gwb2dsp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/gwdegree-ergmTerm.Rd |only ergm-4.2.3/ergm/man/gwdsp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/gwesp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/gwidegree-ergmTerm.Rd |only ergm-4.2.3/ergm/man/gwnsp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/gwodegree-ergmTerm.Rd |only ergm-4.2.3/ergm/man/hamming-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/hamming-ergmTerm.Rd |only ergm-4.2.3/ergm/man/idegrange-ergmTerm.Rd |only ergm-4.2.3/ergm/man/idegree-ergmTerm.Rd |only ergm-4.2.3/ergm/man/idegree1.5-ergmTerm.Rd |only ergm-4.2.3/ergm/man/idegreedist-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/idegrees-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/ininterval-ergmTerm.Rd |only ergm-4.2.3/ergm/man/intransitive-ergmTerm.Rd |only ergm-4.2.3/ergm/man/is.inCH.Rd |only ergm-4.2.3/ergm/man/isolatededges-ergmTerm.Rd |only ergm-4.2.3/ergm/man/isolates-ergmTerm.Rd |only ergm-4.2.3/ergm/man/istar-ergmTerm.Rd |only ergm-4.2.3/ergm/man/kstar-ergmTerm.Rd |only ergm-4.2.3/ergm/man/localtriangle-ergmTerm.Rd |only ergm-4.2.3/ergm/man/m2star-ergmTerm.Rd |only ergm-4.2.3/ergm/man/meandeg-ergmTerm.Rd |only ergm-4.2.3/ergm/man/mm-ergmTerm.Rd |only ergm-4.2.3/ergm/man/mutual-ergmTerm.Rd |only ergm-4.2.3/ergm/man/nearsimmelian-ergmTerm.Rd |only ergm-4.2.3/ergm/man/nodecov-ergmTerm.Rd |only ergm-4.2.3/ergm/man/nodecovar-ergmTerm.Rd |only ergm-4.2.3/ergm/man/nodefactor-ergmTerm.Rd |only ergm-4.2.3/ergm/man/nodeicov-ergmTerm.Rd |only ergm-4.2.3/ergm/man/nodeicovar-ergmTerm.Rd |only ergm-4.2.3/ergm/man/nodeifactor-ergmTerm.Rd |only ergm-4.2.3/ergm/man/nodematch-ergmTerm.Rd |only ergm-4.2.3/ergm/man/nodemix-ergmTerm.Rd |only ergm-4.2.3/ergm/man/nodeocov-ergmTerm.Rd |only ergm-4.2.3/ergm/man/nodeocovar-ergmTerm.Rd |only ergm-4.2.3/ergm/man/nodeofactor-ergmTerm.Rd |only ergm-4.2.3/ergm/man/nsp-ergmTerm.Rd |only ergm-4.2.3/ergm/man/observed-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/odegrange-ergmTerm.Rd |only ergm-4.2.3/ergm/man/odegree-ergmTerm.Rd |only ergm-4.2.3/ergm/man/odegree1.5-ergmTerm.Rd |only ergm-4.2.3/ergm/man/odegreedist-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/odegrees-ergmConstraint.Rd |only ergm-4.2.3/ergm/man/opentriad-ergmTerm.Rd |only ergm-4.2.3/ergm/man/ostar-ergmTerm.Rd |only ergm-4.2.3/ergm/man/randomtoggle-ergmProposal.Rd |only ergm-4.2.3/ergm/man/receiver-ergmTerm.Rd |only ergm-4.2.3/ergm/man/search.ergmConstraints.Rd |only ergm-4.2.3/ergm/man/search.ergmProposals.Rd |only ergm-4.2.3/ergm/man/search.ergmReferences.Rd |only ergm-4.2.3/ergm/man/sender-ergmTerm.Rd |only ergm-4.2.3/ergm/man/simmelian-ergmTerm.Rd |only ergm-4.2.3/ergm/man/simmelianties-ergmTerm.Rd |only ergm-4.2.3/ergm/man/smalldiff-ergmTerm.Rd |only ergm-4.2.3/ergm/man/smallerthan-ergmTerm.Rd |only ergm-4.2.3/ergm/man/sociality-ergmTerm.Rd |only ergm-4.2.3/ergm/man/sparse-ergmHint.Rd |only ergm-4.2.3/ergm/man/strat-ergmHint.Rd |only ergm-4.2.3/ergm/man/sum-ergmTerm.Rd |only ergm-4.2.3/ergm/man/threetrail-ergmTerm.Rd |only ergm-4.2.3/ergm/man/transitive-ergmTerm.Rd |only ergm-4.2.3/ergm/man/transitiveties-ergmTerm.Rd |only ergm-4.2.3/ergm/man/transitiveweights-ergmTerm.Rd |only ergm-4.2.3/ergm/man/triadcensus-ergmTerm.Rd |only ergm-4.2.3/ergm/man/triangle-ergmTerm.Rd |only ergm-4.2.3/ergm/man/tripercent-ergmTerm.Rd |only ergm-4.2.3/ergm/man/ttriple-ergmTerm.Rd |only ergm-4.2.3/ergm/man/twopath-ergmTerm.Rd |only ergm-4.3.1/ergm/DESCRIPTION | 27 ergm-4.3.1/ergm/MD5 | 549 +- ergm-4.3.1/ergm/NAMESPACE | 8 ergm-4.3.1/ergm/R/InitErgmConstraint.R | 197 ergm-4.3.1/ergm/R/InitErgmConstraint.hints.R | 61 ergm-4.3.1/ergm/R/InitErgmProposal.R | 203 ergm-4.3.1/ergm/R/InitErgmTerm.R | 921 ---- ergm-4.3.1/ergm/R/InitErgmTerm.dgw_sp.R | 22 ergm-4.3.1/ergm/R/InitErgmTerm.operator.R | 166 ergm-4.3.1/ergm/R/InitWtErgmTerm.R | 84 ergm-4.3.1/ergm/R/InitWtErgmTerm.operator.R | 24 ergm-4.3.1/ergm/R/control.ergm.R | 61 ergm-4.3.1/ergm/R/ergm-defunct.R | 11 ergm-4.3.1/ergm/R/ergm-options.R | 2 ergm-4.3.1/ergm/R/ergm-package.R | 56 ergm-4.3.1/ergm/R/ergm-terms-index.R | 187 ergm-4.3.1/ergm/R/ergm.CD.fixed.R | 4 ergm-4.3.1/ergm/R/ergm.MCMLE.R | 4 ergm-4.3.1/ergm/R/ergm.R | 205 ergm-4.3.1/ergm/R/ergm.bridge.R | 4 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| 15 ergm-4.3.1/ergm/man/ergm_symmetrize.Rd | 2 ergm-4.3.1/ergm/man/esp-ergmTerm-d2e07fc8.Rd |only ergm-4.3.1/ergm/man/fixallbut-ergmConstraint-ea96b2e0.Rd |only ergm-4.3.1/ergm/man/fixedas-ergmConstraint-3f69c25b.Rd |only ergm-4.3.1/ergm/man/greaterthan-ergmTerm-6b8cc380.Rd |only ergm-4.3.1/ergm/man/gwb1degree-ergmTerm-847064c5.Rd |only ergm-4.3.1/ergm/man/gwb1dsp-ergmTerm-0bf628f4.Rd |only ergm-4.3.1/ergm/man/gwb2degree-ergmTerm-584e787c.Rd |only ergm-4.3.1/ergm/man/gwb2dsp-ergmTerm-2d408a5d.Rd |only ergm-4.3.1/ergm/man/gwdegree-ergmTerm-b4e39ca9.Rd |only ergm-4.3.1/ergm/man/gwdsp-ergmTerm-4e3dfd97.Rd |only ergm-4.3.1/ergm/man/gwesp-ergmTerm-3d6fb5a8.Rd |only ergm-4.3.1/ergm/man/gwidegree-ergmTerm-b37ed894.Rd |only ergm-4.3.1/ergm/man/gwnsp-ergmTerm-6def2a32.Rd |only ergm-4.3.1/ergm/man/gwodegree-ergmTerm-276e606c.Rd |only ergm-4.3.1/ergm/man/hamming-ergmConstraint-82ea89b9.Rd |only ergm-4.3.1/ergm/man/hamming-ergmTerm-82ea89b9.Rd |only 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ergm-4.3.1/ergm/man/nearsimmelian-ergmTerm-ba85787e.Rd |only ergm-4.3.1/ergm/man/nodecov-ergmTerm-e6fb5c28.Rd |only ergm-4.3.1/ergm/man/nodecovar-ergmTerm-35c93a8b.Rd |only ergm-4.3.1/ergm/man/nodefactor-ergmTerm-6bea11f2.Rd |only ergm-4.3.1/ergm/man/nodeicov-ergmTerm-02d64b5b.Rd |only ergm-4.3.1/ergm/man/nodeicovar-ergmTerm-06cfbce0.Rd |only ergm-4.3.1/ergm/man/nodeifactor-ergmTerm-7604a73e.Rd |only ergm-4.3.1/ergm/man/nodematch-ergmTerm-b316dba4.Rd |only ergm-4.3.1/ergm/man/nodemix-ergmTerm-4723046c.Rd |only ergm-4.3.1/ergm/man/nodeocov-ergmTerm-3b42993a.Rd |only ergm-4.3.1/ergm/man/nodeocovar-ergmTerm-1fd42ee5.Rd |only ergm-4.3.1/ergm/man/nodeofactor-ergmTerm-8944a896.Rd |only ergm-4.3.1/ergm/man/nsp-ergmTerm-4586ea4f.Rd |only ergm-4.3.1/ergm/man/observed-ergmConstraint-40f366ed.Rd |only ergm-4.3.1/ergm/man/odegrange-ergmTerm-a29a08d0.Rd |only ergm-4.3.1/ergm/man/odegree-ergmTerm-12c180fc.Rd |only ergm-4.3.1/ergm/man/odegree15-ergmTerm-8ee8801b.Rd |only ergm-4.3.1/ergm/man/odegreedist-ergmConstraint-692ae020.Rd |only ergm-4.3.1/ergm/man/odegrees-ergmConstraint-43961eb5.Rd |only ergm-4.3.1/ergm/man/opentriad-ergmTerm-f67c1cac.Rd |only ergm-4.3.1/ergm/man/ostar-ergmTerm-88787ec2.Rd |only ergm-4.3.1/ergm/man/randomtoggle-ergmProposal-cb2c53fa.Rd |only ergm-4.3.1/ergm/man/receiver-ergmTerm-1f82207a.Rd |only ergm-4.3.1/ergm/man/san.Rd | 150 ergm-4.3.1/ergm/man/search.ergmTerms.Rd | 68 ergm-4.3.1/ergm/man/sender-ergmTerm-e4dff00f.Rd |only ergm-4.3.1/ergm/man/shrink_into_CH.Rd |only ergm-4.3.1/ergm/man/simmelian-ergmTerm-15e60325.Rd |only ergm-4.3.1/ergm/man/simmelianties-ergmTerm-3361aef9.Rd |only ergm-4.3.1/ergm/man/simulate.ergm.Rd | 31 ergm-4.3.1/ergm/man/smalldiff-ergmTerm-11cc89ad.Rd |only ergm-4.3.1/ergm/man/smallerthan-ergmTerm-33549cdd.Rd |only ergm-4.3.1/ergm/man/sociality-ergmTerm-ecb55eaa.Rd |only ergm-4.3.1/ergm/man/sparse-ergmHint-ebcaba30.Rd |only ergm-4.3.1/ergm/man/strat-ergmHint-468d7d5e.Rd |only 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ergm-4.3.1/ergm/tests/testthat/test-proposal-bdstrattnt.R | 1689 ++++--- ergm-4.3.1/ergm/tests/testthat/test-term-For.R |only ergm-4.3.1/ergm/vignettes/Proposal-Lookup-API.Rmd | 3 ergm-4.3.1/ergm/vignettes/Terms-API.Rmd | 141 462 files changed, 6531 insertions(+), 4500 deletions(-)
Title: Tools to Handle and Publish Metadata as 'Atom' XML Format
Description: Provides tools to read/write/publish metadata based on the 'Atom' XML syndication format. This includes
support of 'Dublin Core' XML implementation, and a client to API(s) implementing the 'AtomPub' 'SWORD' API specification.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between atom4R versions 0.3-1 dated 2022-08-19 and 0.3-2 dated 2022-11-07
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 16 +++++++++++++--- R/AtomEntry.R | 1 + R/DCEntry.R | 13 ++++++++++++- README.md | 2 +- man/DCEntry.Rd | 14 ++++++++++++++ 7 files changed, 51 insertions(+), 15 deletions(-)
Title: Simulate Survival Time and Markers
Description: Provides functions to simulate from joint survival and marker
models. The user can specific all basis functions of time, random or
deterministic covariates, random or deterministic left-truncation and
right-censoring times, and model parameters.
Author: Benjamin Christoffersen [cre, aut]
,
Mark Clements [cph],
Ignace Bogaert [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between SimSurvNMarker versions 0.1.2 dated 2022-03-30 and 0.1.3 dated 2022-11-07
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- build/vignette.rds |binary src/Makevars | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
More information about SimSurvNMarker at CRAN
Permanent link
Title: Single Cell Cluster-Based Annotation Toolkit for Cellular
Heterogeneity
Description: An automatic cluster-based annotation pipeline based on evidence-based score by matching the marker genes with known cell markers in tissue-specific cell taxonomy reference database for single-cell RNA-seq data. See Shao X, et al (2020) <doi:10.1016/j.isci.2020.100882> for more details.
Author: Xin Shao
Maintainer: Xin Shao<xin_shao@zju.edu.cn>
Diff between scCATCH versions 3.2 dated 2022-09-14 and 3.2.1 dated 2022-11-07
DESCRIPTION | 8 +- MD5 | 8 +- R/rev_gene.R | 2 inst/doc/tutorial.html | 184 ++++++++++++++++++++++++++++++++----------------- man/rev_gene.Rd | 2 5 files changed, 132 insertions(+), 72 deletions(-)
Title: Trend Estimating Tools
Description: The traditional linear regression trend, Modified Mann-Kendall (MK)
non-parameter trend and bootstrap trend are included in this package. Linear
regression trend is rewritten by '.lm.fit'. MK trend is rewritten by 'Rcpp'.
Finally, those functions are about 10 times faster than previous version
in R.
Reference:
Hamed, K. H., & Rao, A. R. (1998). A modified Mann-Kendall trend test for
autocorrelated data. Journal of hydrology, 204(1-4), 182-196.
<doi:10.1016/S0022-1694(97)00125-X>.
Author: Dongdong Kong [aut, cre] ,
Heyang Song [aut]
Maintainer: Dongdong Kong <kongdd.sysu@gmail.com>
Diff between rtrend versions 0.1.3 dated 2022-04-03 and 0.1.4 dated 2022-11-07
rtrend-0.1.3/rtrend/R/Ipaper/arr_3d.R |only rtrend-0.1.3/rtrend/R/Ipaper/par_plyr.R |only rtrend-0.1.3/rtrend/R/Ipaper/slope_rast.R |only rtrend-0.1.4/rtrend/DESCRIPTION | 15 +++---- rtrend-0.1.4/rtrend/MD5 | 40 +++++++++++++------ rtrend-0.1.4/rtrend/NAMESPACE | 30 ++++++++++++++ rtrend-0.1.4/rtrend/NEWS.md | 7 +++ rtrend-0.1.4/rtrend/R/arr_3d.R |only rtrend-0.1.4/rtrend/R/examples/ex-slope_rast.R |only rtrend-0.1.4/rtrend/R/main_Ipaper.R | 28 ++++++++++++- rtrend-0.1.4/rtrend/R/par_plyr.R |only rtrend-0.1.4/rtrend/R/rtrend-package.R | 8 +++ rtrend-0.1.4/rtrend/R/slope_rast.R |only rtrend-0.1.4/rtrend/build/partial.rdb |binary rtrend-0.1.4/rtrend/build/vignette.rds |only rtrend-0.1.4/rtrend/inst |only rtrend-0.1.4/rtrend/man/acf.fft.Rd | 3 - rtrend-0.1.4/rtrend/man/apply_3d.Rd |only rtrend-0.1.4/rtrend/man/apply_col.Rd |only rtrend-0.1.4/rtrend/man/array_3dTo2d.Rd |only rtrend-0.1.4/rtrend/man/chunk.Rd |only rtrend-0.1.4/rtrend/man/llply_par.Rd |only rtrend-0.1.4/rtrend/man/rtrend-package.Rd | 2 rtrend-0.1.4/rtrend/man/set_dim.Rd |only rtrend-0.1.4/rtrend/man/slope_arr.Rd |only rtrend-0.1.4/rtrend/man/slope_rast.Rd |only rtrend-0.1.4/rtrend/man/split_data.Rd |only rtrend-0.1.4/rtrend/tests/testthat/test-slope_rast.R |only rtrend-0.1.4/rtrend/vignettes |only 29 files changed, 110 insertions(+), 23 deletions(-)
Title: HTTP Web Server for R
Description: An HTTP web server for R with a documented API to interface between R and the server. The documentation contains the Rook specification and details for building and running Rook applications. To get started, be sure and read the 'Rook' help file first.
Author: Jeffrey Horner [aut], Evan Biederstedt [aut, cre]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between Rook versions 1.1-1 dated 2014-10-20 and 1.2 dated 2022-11-07
DESCRIPTION | 22 ++++++------- MD5 | 12 +++---- R/Rhttpd.R | 2 - R/utils.R | 85 +++++++++++++++++++++++++--------------------------- README.md | 16 ++++++++- man/Rook-package.Rd | 2 - src/rook.c | 21 ++++++++---- 7 files changed, 89 insertions(+), 71 deletions(-)
Title: Miscellaneous Functions for 'ggplot2'
Description: Useful functions to edit 'ggplot' object (e.g., setting fonts for theme and layers, adding rounded rectangle as background for each of the legends).
Author: Guangchuang Yu [aut, cre, cph]
,
Shuangbin Xu [aut]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggfun versions 0.0.7 dated 2022-08-31 and 0.0.8 dated 2022-11-07
DESCRIPTION | 6 +- MD5 | 14 +++--- NEWS.md | 5 ++ R/reexport.R | 2 R/utilities.R | 2 build/vignette.rds |binary inst/doc/ggfun.html | 108 +++++++++++++++++++++++------------------------ man/element_roundrect.Rd | 2 8 files changed, 72 insertions(+), 67 deletions(-)
Title: Parsing and Evaluation Tools that Provide More Details than the
Default
Description: Parsing and evaluation tools that make it easy to recreate the
command line behaviour of R.
Author: Hadley Wickham [aut],
Yihui Xie [aut, cre] ,
Michael Lawrence [ctb],
Thomas Kluyver [ctb],
Jeroen Ooms [ctb],
Barret Schloerke [ctb],
Adam Ryczkowski [ctb],
Hiroaki Yutani [ctb],
Michel Lang [ctb],
Karolis Koncevičius [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between evaluate versions 0.17 dated 2022-10-07 and 0.18 dated 2022-11-07
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 5 +++++ tests/testthat/ggplot-loop.r | 2 +- tests/testthat/ggplot.r | 2 +- tests/testthat/raw-output.r | 2 +- 6 files changed, 16 insertions(+), 11 deletions(-)
Title: Retrieve Data on European Union Law
Description: Access to data on European Union laws and court decisions made easy with pre-defined 'SPARQL' queries and 'GET' requests.
Author: Michal Ovadek [aut, cre, cph]
Maintainer: Michal Ovadek <michal.ovadek@gmail.com>
Diff between eurlex versions 0.4.2 dated 2022-05-25 and 0.4.3 dated 2022-11-07
DESCRIPTION | 9 MD5 | 38 +-- NAMESPACE | 22 - NEWS.md | 16 + R/elx_download_xml.R | 2 R/elx_make_query.R | 80 ++++-- R/elx_run_query.R | 12 - README.md | 25 +- build/vignette.rds |binary inst/doc/eurlexpkg.R | 10 inst/doc/eurlexpkg.Rmd | 18 - inst/doc/eurlexpkg.html | 545 ++++++++++++++++++++++++++++++++++++++--------- man/elx_council_votes.Rd | 38 +-- man/elx_curia_list.Rd | 62 ++--- man/elx_download_xml.Rd | 90 +++---- man/elx_fetch_data.Rd | 84 +++---- man/elx_label_eurovoc.Rd | 50 ++-- man/elx_make_query.Rd | 215 +++++++++--------- man/elx_run_query.Rd | 60 ++--- vignettes/eurlexpkg.Rmd | 18 - 20 files changed, 892 insertions(+), 502 deletions(-)
Title: Compositional Data Analysis for Microbiome Studies
Description: Functions for microbiome data analysis that take into account its compositional nature. Performs variable selection through penalized regression for both, cross-sectional and longitudinal studies, and for binary and continuous outcomes.
Author: Malu Calle [aut] ,
Toni Susin [aut, cre]
Maintainer: Toni Susin <toni.susin@upc.edu>
Diff between coda4microbiome versions 0.1.1 dated 2022-03-31 and 0.1.2 dated 2022-11-07
DESCRIPTION | 10 - MD5 | 20 +- R/coda4microbiome_functions.R | 19 +- R/coda4microbiome_longitudinal_functions.R | 228 ++++++++++++++++++++--------- build/partial.rdb |binary build/vignette.rds |binary man/explore_lr_longitudinal.Rd | 2 man/filter_longitudinal.Rd | 5 man/integralFun.Rd | 2 man/plot_signature.Rd | 4 man/plot_signature_curves.Rd | 31 +++ 11 files changed, 226 insertions(+), 95 deletions(-)
More information about coda4microbiome at CRAN
Permanent link
Title: Access, Retrieve, and Work with Canadian Census Data and
Geography
Description: Integrated, convenient, and uniform access to Canadian
Census data and geography retrieved using the 'CensusMapper' API. This package produces analysis-ready
tidy data frames and spatial data in multiple formats, as well as convenience functions
for working with Census variables, variable hierarchies, and region selection. API
keys are freely available with free registration at <https://censusmapper.ca/api>.
Census data and boundary geometries are reproduced and distributed on an "as
is" basis with the permission of Statistics Canada (Statistics Canada 2001; 2006;
2011; 2016; 2021).
Author: Jens von Bergmann [aut] ,
Dmitry Shkolnik [aut, cre] ,
Aaron Jacobs [aut]
Maintainer: Dmitry Shkolnik <shkolnikd@gmail.com>
Diff between cancensus versions 0.5.3 dated 2022-08-25 and 0.5.4 dated 2022-11-07
DESCRIPTION | 6 ++-- MD5 | 25 +++++++++-------- NAMESPACE | 1 NEWS.md | 7 +++++ R/cancensus.R | 36 ++++++++++++++++++++----- R/census_regions.R | 46 ++++++++++++++++++++++++++++++--- R/census_vectors.R | 1 R/helpers.R | 13 +++++++++ R/intersect_geometry.R | 1 R/vector_discovery.R | 2 + README.md | 4 +- inst/doc/data_discovery.html | 6 ++-- man/add_unique_names_to_region_list.Rd |only man/search_census_regions.Rd | 7 ++--- 14 files changed, 121 insertions(+), 34 deletions(-)
Title: Bayesian Structural Time Series
Description: Time series regression using dynamic linear models fit using
MCMC. See Scott and Varian (2014) <DOI:10.1504/IJMMNO.2014.059942>, among many
other sources.
Author: Steven L. Scott <steve.the.bayesian@gmail.com>
Maintainer: Steven L. Scott <steve.the.bayesian@gmail.com>
Diff between bsts versions 0.9.8 dated 2022-05-30 and 0.9.9 dated 2022-11-07
DESCRIPTION | 12 ++++---- MD5 | 7 ++--- R/bsts.R | 43 ++++++++++++++++++++++++++++++-- src/dynamic_intercept_model_manager.cc | 5 ++- tests/testthat/test-sigma-upper-limit.R |only 5 files changed, 54 insertions(+), 13 deletions(-)
Title: Create Interactive Web Graphics via 'plotly.js'
Description: Create interactive web graphics from 'ggplot2' graphs and/or a custom interface to the (MIT-licensed) JavaScript library 'plotly.js' inspired by the grammar of graphics.
Author: Carson Sievert [aut, cre] ,
Chris Parmer [aut],
Toby Hocking [aut],
Scott Chamberlain [aut],
Karthik Ram [aut],
Marianne Corvellec [aut] ,
Pedro Despouy [aut],
Salim Brueggemann [ctb] ,
Plotly Technologies Inc. [cph]
Maintainer: Carson Sievert <cpsievert1@gmail.com>
Diff between plotly versions 4.10.0 dated 2021-10-09 and 4.10.1 dated 2022-11-07
DESCRIPTION | 14 MD5 | 880 +++++----- NAMESPACE | 7 NEWS.md | 29 R/add.R | 6 R/animate.R | 2 R/api_exports.R | 2 R/dev.R | 4 R/ggplotly.R | 54 R/group2NA.R | 2 R/helpers.R | 33 R/highlight.R | 5 R/kaleido.R | 2 R/layers2traces.R | 133 + R/layout.R | 4 R/mathjax.R | 2 R/orca.R | 2 R/partial_bundles.R | 2 R/plotly.R | 18 R/plotly_build.R | 8 R/plotly_data.R | 2 R/plotly_example.R | 4 R/proxy.R | 2 R/shiny.R | 10 R/signup.R | 2 R/staticimports.R |only R/style.R | 2 R/subplots.R | 4 R/sysdata.rda |binary R/toRGB.R | 4 R/utils.R | 20 README.md | 8 demo/crosstalk-highlight-intro.R | 5 inst/examples/shiny/event_data/tests/shinytest/mytest-expected/001.json | 14 inst/examples/shiny/event_data/tests/shinytest/mytest-expected/002.json | 14 inst/examples/shiny/event_data/tests/shinytest/mytest-expected/003.json | 14 inst/examples/shiny/event_data/tests/shinytest/mytest-expected/004.json | 14 inst/htmlwidgets/lib/plotlyjs/locales/cs.js | 2 inst/htmlwidgets/lib/plotlyjs/locales/cy.js | 2 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Title: Data and Functions to Accompany Analisis De Datos Con R
Description: Datasets and Functions to Accompany Salas-Eljatib (2021, ISBN: 9789566086109)
"Analisis de datos con el programa estadistico R: una introduccion aplicada". The package helps carry out data management, exploratory analyses, and model fitting.
Author: Christian Salas-Eljatib [aut, cre, cph]
,
Nicolas Pino [aut],
Joaquin Riquelme [aut]
Maintainer: Christian Salas-Eljatib <cseljatib@gmail.com>
Diff between datana versions 1.0.1 dated 2022-11-03 and 1.0.2 dated 2022-11-07
DESCRIPTION | 8 MD5 | 94 +++++----- R/describe_datas.R | 448 ++++++++++++++++++++++++++++++++++-------------- build/partial.rdb |binary data/datalist | 6 data/pinaster2.rda |only data/pinusContorta.rda |binary data/pinusContorta2.rda |only data/pinusSpp.rda |binary data/pinusSpp2.rda |only data/pspLlancahue2.rda |only data/pspRuca2.rda |binary data/raulihg2.rda |binary data/snaspeChile.rda |binary data/snaspeChile2.rda |only data/treevolroble2.rda |binary data/treevolruca2.rda |only man/airquality2.Rd | 2 man/araucaria.Rd | 9 man/araucaria2.Rd | 6 man/corkoak.Rd | 2 man/corkoak2.Rd | 2 man/crownradii.Rd | 2 man/datana-package.Rd | 5 man/eucaleaf.Rd | 2 man/eucaleaf2.Rd | 2 man/eucaplot.Rd | 2 man/eucaplot2.Rd | 2 man/fishgrowth2.Rd | 8 man/idahohd2.Rd | 2 man/pinaster.Rd | 13 - man/pinaster2.Rd |only man/pinusContorta.Rd | 12 - man/pinusContorta2.Rd |only man/pinusSpp.Rd | 26 +- man/pinusSpp2.Rd |only man/pspLlancahue.Rd | 13 - man/pspLlancahue2.Rd |only man/pspRuca.Rd | 9 man/pspRuca2.Rd | 23 +- man/ptaeda.Rd | 4 man/raulihg.Rd | 16 - man/raulihg2.Rd | 14 - man/simula.Rd | 12 - man/snaspeChile.Rd | 12 - man/snaspeChile2.Rd |only man/speciesList.Rd | 2 man/treelistinve.Rd | 5 man/treelistinve2.Rd | 5 man/treevol2.Rd | 2 man/treevolroble.Rd | 19 -- man/treevolroble2.Rd | 23 +- man/treevolruca.Rd | 11 - man/treevolruca2.Rd |only 54 files changed, 522 insertions(+), 301 deletions(-)
Title: Accelerated Oblique Random Survival Forests
Description: Fit, interpret, and make predictions with oblique random survival forests. Oblique decision trees are notoriously slow compared to their axis based counterparts, but 'aorsf' runs as fast or faster than axis-based decision tree algorithms for right-censored time-to-event outcomes. Methods to accelerate and interpret the oblique random survival forest are described in Jaeger et al., (2022) <arXiv:2208.01129>.
Author: Byron Jaeger [aut, cre] ,
Nicholas Pajewski [ctb],
Sawyer Welden [ctb],
Christopher Jackson [rev],
Marvin Wright [rev],
Lukas Burk [rev]
Maintainer: Byron Jaeger <bjaeger@wakehealth.edu>
Diff between aorsf versions 0.0.3 dated 2022-10-09 and 0.0.4 dated 2022-11-07
aorsf-0.0.3/aorsf/R/select_cols.R |only aorsf-0.0.3/aorsf/R/vet.R |only aorsf-0.0.4/aorsf/DESCRIPTION | 8 aorsf-0.0.4/aorsf/MD5 | 67 aorsf-0.0.4/aorsf/NAMESPACE | 1 aorsf-0.0.4/aorsf/NEWS.md | 80 - aorsf-0.0.4/aorsf/R/RcppExports.R | 4 aorsf-0.0.4/aorsf/R/aorsf-package.R | 1 aorsf-0.0.4/aorsf/R/check.R | 3 aorsf-0.0.4/aorsf/R/collapse_misc.R |only aorsf-0.0.4/aorsf/R/impute_meanmode.R |only aorsf-0.0.4/aorsf/R/misc.R | 4 aorsf-0.0.4/aorsf/R/orsf.R | 266 ++- aorsf-0.0.4/aorsf/R/orsf_attr.R | 205 +- aorsf-0.0.4/aorsf/R/orsf_pd.R | 1203 ++++++++-------- aorsf-0.0.4/aorsf/R/orsf_predict.R | 41 aorsf-0.0.4/aorsf/R/orsf_vi.R | 9 aorsf-0.0.4/aorsf/R/prep_x.R |only aorsf-0.0.4/aorsf/R/prep_y.R |only aorsf-0.0.4/aorsf/R/ref_code.R | 358 ++-- aorsf-0.0.4/aorsf/R/roxy.R | 561 +++---- aorsf-0.0.4/aorsf/inst/doc/aorsf.html | 37 aorsf-0.0.4/aorsf/inst/doc/oobag.html | 39 aorsf-0.0.4/aorsf/inst/doc/pd.R | 3 aorsf-0.0.4/aorsf/inst/doc/pd.Rmd | 613 ++++---- aorsf-0.0.4/aorsf/inst/doc/pd.html | 284 +-- aorsf-0.0.4/aorsf/man/orsf.Rd | 133 - aorsf-0.0.4/aorsf/man/orsf_control_custom.Rd | 16 aorsf-0.0.4/aorsf/man/orsf_ice_oob.Rd | 24 aorsf-0.0.4/aorsf/man/orsf_pd_oob.Rd | 36 aorsf-0.0.4/aorsf/man/orsf_vi.Rd | 97 - aorsf-0.0.4/aorsf/man/predict.orsf_fit.Rd | 16 aorsf-0.0.4/aorsf/src/RcppExports.cpp | 9 aorsf-0.0.4/aorsf/src/orsf.cpp | 83 - aorsf-0.0.4/aorsf/tests/testthat/test-impute_meanmode.R |only aorsf-0.0.4/aorsf/tests/testthat/test-orsf.R | 129 + aorsf-0.0.4/aorsf/tests/testthat/test-orsf_pd.R | 402 ++--- aorsf-0.0.4/aorsf/vignettes/pd.Rmd | 613 ++++---- 38 files changed, 2862 insertions(+), 2483 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-20 0.6.0
2020-01-27 0.5.0
2018-10-25 0.4.0
2018-03-29 0.3.0
2018-01-15 0.2.0
2017-09-25 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-24 1.0.1
2021-06-21 1.0.0