Title: Computes Credible Intervals for Bayesian Wavelet Shrinkage
Description: Computes Bayesian wavelet shrinkage credible intervals for
nonparametric regression.
The method uses cumulants to derive Bayesian credible intervals for
wavelet regression estimates.
The first four cumulants of the posterior distribution of the
estimates are expressed in terms of the observed data and integer
powers of the mother wavelet functions.
These powers are closely approximated by linear combinations of
wavelet scaling functions at an appropriate finer scale.
Hence, a suitable modification of the discrete wavelet transform allows
the posterior cumulants to be found efficiently for any data set.
Johnson transformations then yield the credible intervals themselves.
Barber, S., Nason, G.P. and Silverman, B.W. (2002)
<doi:10.1111/1467-9868.00332>.
Author: Stuart Barber [aut],
Guy Nason [cre, ctb]
Maintainer: Guy Nason <g.nason@imperial.ac.uk>
Diff between waveband versions 4.7.1 dated 2020-10-15 and 4.7.2 dated 2022-11-11
DESCRIPTION | 8 +- MD5 | 8 +- inst/CHANGES | 3 + src/functions.c | 156 +++++++++++++++++++------------------------------------- src/wrow.c | 73 +++++++++++--------------- 5 files changed, 98 insertions(+), 150 deletions(-)
Title: Miscellaneous Useful Functions for Statistics
Description: A series of functions in some way considered useful to the author. These
include methods for subsetting tables and generating indices for arrays,
conditioning and intervening in probability distributions, generating
combinations, fast transformations, and more...
Author: Robin Evans [aut, cre],
Mathias Drton [ctb]
Maintainer: Robin Evans <evans@stats.ox.ac.uk>
Diff between rje versions 1.12.0 dated 2022-11-09 and 1.12.1 dated 2022-11-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/zzz.R | 9 --------- inst/doc/conditional_distributions.html | 4 ++-- 4 files changed, 8 insertions(+), 17 deletions(-)
Title: Model-Based Clustering for Multivariate Partial Ranking Data
Description: Implementation of a model-based clustering algorithm for
ranking data (C. Biernacki, J. Jacques (2013) <doi:10.1016/j.csda.2012.08.008>).
Multivariate rankings as well as partial rankings are taken
into account. This algorithm is based on an extension of the Insertion
Sorting Rank (ISR) model for ranking data, which is a meaningful and
effective model parametrized by a position parameter (the modal ranking,
quoted by mu) and a dispersion parameter (quoted by pi). The heterogeneity
of the rank population is modelled by a mixture of ISR, whereas conditional
independence assumption is considered for multivariate rankings.
Author: Quentin Grimonprez [aut, cre],
Julien Jacques [aut],
Christophe Biernacki [aut]
Maintainer: Quentin Grimonprez <quentingrim@yahoo.fr>
Diff between Rankcluster versions 0.94.5 dated 2021-01-27 and 0.98.0 dated 2022-11-11
Rankcluster-0.94.5/Rankcluster/R/RankDistance.R |only Rankcluster-0.94.5/Rankcluster/R/RankFunctions.R |only Rankcluster-0.94.5/Rankcluster/src/run.cpp |only Rankcluster-0.94.5/Rankcluster/src/run.h |only Rankcluster-0.94.5/Rankcluster/src/runFunctions.cpp |only Rankcluster-0.94.5/Rankcluster/src/runFunctions.h |only Rankcluster-0.94.5/Rankcluster/src/runTest.cpp |only Rankcluster-0.94.5/Rankcluster/src/runTest.h |only Rankcluster-0.98.0/Rankcluster/DESCRIPTION | 16 Rankcluster-0.98.0/Rankcluster/MD5 | 110 Rankcluster-0.98.0/Rankcluster/NEWS |only Rankcluster-0.98.0/Rankcluster/R/ISRdistribution.R |only Rankcluster-0.98.0/Rankcluster/R/Rankcluster-package.R | 28 Rankcluster-0.98.0/Rankcluster/R/checkFunctions.R | 101 Rankcluster-0.98.0/Rankcluster/R/conversion.R | 256 - Rankcluster-0.98.0/Rankcluster/R/criteria.R | 99 Rankcluster-0.98.0/Rankcluster/R/data.R | 150 Rankcluster-0.98.0/Rankcluster/R/mixtureSEM.R | 323 - Rankcluster-0.98.0/Rankcluster/R/rankDistance.R |only Rankcluster-0.98.0/Rankcluster/R/rankManipulation.R |only Rankcluster-0.98.0/Rankcluster/R/rankclust.R | 172 - Rankcluster-0.98.0/Rankcluster/R/resultClass.R | 188 - Rankcluster-0.98.0/Rankcluster/R/test.R | 164 Rankcluster-0.98.0/Rankcluster/R/zzz.R | 6 Rankcluster-0.98.0/Rankcluster/build/vignette.rds |binary Rankcluster-0.98.0/Rankcluster/inst/doc/Rankcluster.pdf |binary Rankcluster-0.98.0/Rankcluster/inst/doc/dataFormat.html | 286 + Rankcluster-0.98.0/Rankcluster/man/APA.Rd | 18 Rankcluster-0.98.0/Rankcluster/man/Output-class.Rd | 10 Rankcluster-0.98.0/Rankcluster/man/Rankclust-class.Rd | 9 Rankcluster-0.98.0/Rankcluster/man/Rankcluster-package.Rd | 20 Rankcluster-0.98.0/Rankcluster/man/big4.Rd | 22 Rankcluster-0.98.0/Rankcluster/man/convertRank.Rd | 17 Rankcluster-0.98.0/Rankcluster/man/criteria.Rd | 21 Rankcluster-0.98.0/Rankcluster/man/distCayley.Rd | 5 Rankcluster-0.98.0/Rankcluster/man/distHamming.Rd | 5 Rankcluster-0.98.0/Rankcluster/man/distKendall.Rd | 2 Rankcluster-0.98.0/Rankcluster/man/distSpearman.Rd | 2 Rankcluster-0.98.0/Rankcluster/man/eurovision.Rd | 19 Rankcluster-0.98.0/Rankcluster/man/frequence.Rd | 6 Rankcluster-0.98.0/Rankcluster/man/khi2.Rd | 18 Rankcluster-0.98.0/Rankcluster/man/kullback.Rd | 12 Rankcluster-0.98.0/Rankcluster/man/probability.Rd | 33 Rankcluster-0.98.0/Rankcluster/man/quiz.Rd | 30 Rankcluster-0.98.0/Rankcluster/man/rankclust.Rd | 41 Rankcluster-0.98.0/Rankcluster/man/simulISR.Rd | 9 Rankcluster-0.98.0/Rankcluster/man/sports.Rd | 9 Rankcluster-0.98.0/Rankcluster/man/unfrequence.Rd | 7 Rankcluster-0.98.0/Rankcluster/man/words.Rd | 15 Rankcluster-0.98.0/Rankcluster/src/ISRfunctions.cpp |only Rankcluster-0.98.0/Rankcluster/src/ISRfunctions.h |only Rankcluster-0.98.0/Rankcluster/src/RankCluster.cpp | 2217 ++++++------- Rankcluster-0.98.0/Rankcluster/src/RankCluster.h | 457 +- Rankcluster-0.98.0/Rankcluster/src/RinterfaceFunctions.cpp |only Rankcluster-0.98.0/Rankcluster/src/RinterfaceFunctions.h |only Rankcluster-0.98.0/Rankcluster/src/RinterfaceSEM.cpp |only Rankcluster-0.98.0/Rankcluster/src/RinterfaceSEM.h |only Rankcluster-0.98.0/Rankcluster/src/RinterfaceTest.cpp |only Rankcluster-0.98.0/Rankcluster/src/RinterfaceTest.h |only Rankcluster-0.98.0/Rankcluster/src/Typedef.h |only Rankcluster-0.98.0/Rankcluster/src/functions.cpp | 932 ++--- Rankcluster-0.98.0/Rankcluster/src/functions.h | 164 Rankcluster-0.98.0/Rankcluster/src/test.cpp | 93 Rankcluster-0.98.0/Rankcluster/src/test.h | 50 Rankcluster-0.98.0/Rankcluster/tests |only 65 files changed, 3179 insertions(+), 2963 deletions(-)
Title: Water Quality Metrics Calculator
Description: Calculate different metrics based on aquatic
macroinvertebrate density data (individuals per square meter) to
assess water quality (Prat N et al. 2009).
Author: Juan Manuel Cabrera [aut, cre],
Julieta Capeletti [aut]
Maintainer: Juan Manuel Cabrera <juanmanuelcabrera1@gmail.com>
Diff between metrix versions 1.0.0 dated 2022-03-28 and 1.1.0 dated 2022-11-11
metrix-1.0.0/metrix/R/comp_metrix.R |only metrix-1.0.0/metrix/R/densi_diver.R |only metrix-1.0.0/metrix/R/indrel_diver.R |only metrix-1.0.0/metrix/R/per_diver.R |only metrix-1.0.0/metrix/R/pred_ind.R |only metrix-1.0.0/metrix/R/rich_diver.R |only metrix-1.0.0/metrix/man/comp_metrix.Rd |only metrix-1.0.0/metrix/man/densi_diver.Rd |only metrix-1.0.0/metrix/man/indrel_diver.Rd |only metrix-1.0.0/metrix/man/per_diver.Rd |only metrix-1.0.0/metrix/man/pred_ind.Rd |only metrix-1.0.0/metrix/man/rich_diver.Rd |only metrix-1.1.0/metrix/DESCRIPTION | 28 +++----- metrix-1.1.0/metrix/MD5 | 73 +++++++++++----------- metrix-1.1.0/metrix/NAMESPACE | 12 +-- metrix-1.1.0/metrix/NEWS.md |only metrix-1.1.0/metrix/R/bioitic_ind.R | 37 +++++------ metrix-1.1.0/metrix/R/bmwp_ind.R | 10 +-- metrix-1.1.0/metrix/R/bmwp_p_ind.R | 11 +-- metrix-1.1.0/metrix/R/bmwp_p_p_ind.R | 11 +-- metrix-1.1.0/metrix/R/chkt_f.R | 2 metrix-1.1.0/metrix/R/comp_metrics.R |only metrix-1.1.0/metrix/R/data.R | 11 ++- metrix-1.1.0/metrix/R/densi_metrics.R |only metrix-1.1.0/metrix/R/icbrio_ind.R | 47 ++++++++------ metrix-1.1.0/metrix/R/imrp_ind.R | 13 +-- metrix-1.1.0/metrix/R/metrix_table_template.R | 4 - metrix-1.1.0/metrix/R/read_data.R | 30 +++++++-- metrix-1.1.0/metrix/R/rich_metrics.R |only metrix-1.1.0/metrix/R/sysdata.rda |binary metrix-1.1.0/metrix/R/tol_metrics.R |only metrix-1.1.0/metrix/R/troph_metrics.R |only metrix-1.1.0/metrix/R/water_quality_analysis.R |only metrix-1.1.0/metrix/build/partial.rdb |binary metrix-1.1.0/metrix/inst/WORDLIST | 51 +++------------ metrix-1.1.0/metrix/man/biotic_ind.Rd | 30 ++++----- metrix-1.1.0/metrix/man/bmwp_ind.Rd | 10 +-- metrix-1.1.0/metrix/man/bmwp_p_ind.Rd | 13 +-- metrix-1.1.0/metrix/man/bmwp_p_p_ind.Rd | 13 +-- metrix-1.1.0/metrix/man/comp_metrics.Rd |only metrix-1.1.0/metrix/man/densi_metrics.Rd |only metrix-1.1.0/metrix/man/example_data.Rd | 9 +- metrix-1.1.0/metrix/man/icbrio_ind.Rd | 10 +-- metrix-1.1.0/metrix/man/imrp_ind.Rd | 10 +-- metrix-1.1.0/metrix/man/metrix_table_template.Rd | 4 - metrix-1.1.0/metrix/man/read_data.Rd | 8 +- metrix-1.1.0/metrix/man/rich_metrics.Rd |only metrix-1.1.0/metrix/man/tol_metrics.Rd |only metrix-1.1.0/metrix/man/troph_metrics.Rd |only metrix-1.1.0/metrix/man/water_quality_analysis.Rd |only 50 files changed, 222 insertions(+), 225 deletions(-)
Title: Adapted Pair Correlation Function
Description: The adapted pair correlation function transfers the concept of the
pair correlation function from point patterns to patterns of objects of
finite size and irregular shape (e.g. lakes within a country). The pair
correlation function describes the spatial distribution of objects, e.g.
random, aggregated or regularly spaced. This is a reimplementation of the
method suggested by Nuske et al. (2009) <doi:10.1016/j.foreco.2009.09.050>
using the library 'GEOS'.
Author: Robert Nuske [aut, cre]
Maintainer: Robert Nuske <robert.nuske@mailbox.org>
Diff between apcf versions 0.2.0 dated 2022-03-30 and 0.3.0 dated 2022-11-11
DESCRIPTION | 26 +++++++++++++------------- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ README.md | 23 +++++++---------------- build/vignette.rds |binary inst/doc/intro.Rmd | 10 +++++----- inst/doc/intro.html | 49 +++++++++++++++++++++++++++++++------------------ src/geos_stuff.cpp | 31 +++++++++++++------------------ vignettes/intro.Rmd | 10 +++++----- 9 files changed, 87 insertions(+), 83 deletions(-)
Title: Tools for R Markdown to Docx Documents
Description: A set of helper functions for using R Markdown to create documents
in docx format, especially documents for use in a classroom or workshop
setting.
Author: Richard Layton [aut, cre]
Maintainer: Richard Layton <graphdoctor@gmail.com>
Diff between docxtools versions 0.2.2 dated 2020-06-03 and 0.3.0 dated 2022-11-11
docxtools-0.2.2/docxtools/R/align_pander.R |only docxtools-0.2.2/docxtools/R/docxtools-deprecated.R |only docxtools-0.2.2/docxtools/man/align_pander-deprecated.Rd |only docxtools-0.2.2/docxtools/man/docxtools-deprecated.Rd |only docxtools-0.3.0/docxtools/DESCRIPTION | 13 docxtools-0.3.0/docxtools/MD5 | 50 docxtools-0.3.0/docxtools/NAMESPACE | 2 docxtools-0.3.0/docxtools/NEWS.md | 16 docxtools-0.3.0/docxtools/R/data.R | 2 docxtools-0.3.0/docxtools/R/format_engr.R | 14 docxtools-0.3.0/docxtools/R/put_axes.R | 21 docxtools-0.3.0/docxtools/R/put_gap.R | 14 docxtools-0.3.0/docxtools/README.md | 185 -- docxtools-0.3.0/docxtools/build/vignette.rds |binary docxtools-0.3.0/docxtools/inst/WORDLIST | 8 docxtools-0.3.0/docxtools/inst/doc/numbers-in-engineering-format.R | 3 docxtools-0.3.0/docxtools/inst/doc/numbers-in-engineering-format.Rmd | 5 docxtools-0.3.0/docxtools/inst/doc/numbers-in-engineering-format.html | 774 ++-------- docxtools-0.3.0/docxtools/inst/doc/put-workspace-in-docx.Rmd | 50 docxtools-0.3.0/docxtools/inst/doc/put-workspace-in-docx.html | 327 ++-- docxtools-0.3.0/docxtools/man/density.Rd | 50 docxtools-0.3.0/docxtools/man/put_axes.Rd | 17 docxtools-0.3.0/docxtools/man/put_gap.Rd | 12 docxtools-0.3.0/docxtools/tests/testthat/Rplots.pdf |binary docxtools-0.3.0/docxtools/tests/testthat/test_format_engr.R | 5 docxtools-0.3.0/docxtools/tests/testthat/test_put.R | 4 docxtools-0.3.0/docxtools/vignettes/numbers-in-engineering-format.Rmd | 5 docxtools-0.3.0/docxtools/vignettes/put-workspace-in-docx.Rmd | 50 28 files changed, 597 insertions(+), 1030 deletions(-)
Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data are some of the functions included. We further include functions for percentages (or proportions).
The standard textbook for such data is John Aitchison's (1986) "The statistical analysis of compositional data". Relevant papers include:
a) Tsagris M.T., Preston S. and Wood A.T.A. (2011). A data-based power transformation for compositional data. Fourth International International Workshop on Compositional Data Analysis.
b) Tsagris M. (2014). The k-NN algorithm for compositional data: a revised approach with and without zero values present. Journal of Data Science, 12(3):519--534.
c) Tsagris M. (2015). A novel, divergence based, regression for compositional data. Proceedings of the 28th Panhellenic Statistics Conference, 15-18 April 2015, Athens, Greece, 430--444.
d) Tsagris M. (2015). Regression analysis with compositional data containing zero values. Chilean Journal of Stat [...truncated...]
Author: Michail Tsagris [aut, cre],
Giorgos Athineou [aut],
Abdulaziz Alenazi [ctb],
Christos Adam [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Compositional versions 5.9 dated 2022-10-03 and 6.0 dated 2022-11-11
DESCRIPTION | 11 ++++++----- MD5 | 20 ++++++++++---------- R/js.compreg.R | 2 +- R/kl.compreg.R | 4 ++-- man/Compositional-package.Rd | 6 +++--- man/a.est.Rd | 3 +++ man/alfa.Rd | 5 ++++- man/alfa.contour.Rd | 3 +++ man/alfainv.Rd | 6 ++++-- man/alpha.mle.Rd | 7 +++++-- man/folded.contour.Rd | 3 +++ 11 files changed, 44 insertions(+), 26 deletions(-)
Title: Forecasting Time Series by Theta Models
Description: Routines for forecasting univariate time series using Theta Models.
Author: Jose Augusto Fiorucci [aut, cre, cph]
,
Francisco Louzada [aut, cph]
Maintainer: Jose Augusto Fiorucci <jafiorucci@gmail.com>
Diff between forecTheta versions 2.2 dated 2016-05-26 and 2.6.2 dated 2022-11-11
ChangeLog | 27 ++ DESCRIPTION | 26 +- MD5 | 20 +- NAMESPACE | 6 R/crossValidationFunctions.R | 57 +++--- R/forecastFunctions.R | 373 ++++++++++++++++++++++------------------ man/crossValidationFunctions.Rd | 22 +- man/forecTheta-package.Rd | 44 ++-- man/otm.arXiv.Rd | 32 +-- man/plot.thetaModel.Rd | 61 +++--- man/thetaModels.Rd | 132 +++++++------- 11 files changed, 438 insertions(+), 362 deletions(-)
Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework
in R. CanvasXpress is a standalone JavaScript library for reproducible research
with complete tracking of data and end-user modifications stored in a single
PNG image that can be played back. See <https://www.canvasxpress.org> for more
information.
Author: Isaac Neuhaus [aut],
Connie Brett [aut, cre]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Diff between canvasXpress versions 1.40.6 dated 2022-10-24 and 1.40.6-1 dated 2022-11-11
DESCRIPTION | 6 - MD5 | 10 +- NEWS.md | 3 inst/doc/additional_examples.html | 128 +++++++++++++++++++------------------- inst/doc/getting_started.html | 128 +++++++++++++++++++------------------- tests/testthat/test-other--BASE.R | 3 6 files changed, 146 insertions(+), 132 deletions(-)
Title: In-Line Documentation for R
Description: Generate your Rd documentation, 'NAMESPACE' file, and
collation field using specially formatted comments. Writing
documentation in-line with code makes it easier to keep your
documentation up-to-date as your requirements change. 'roxygen2' is
inspired by the 'Doxygen' system for C++.
Author: Hadley Wickham [aut, cre, cph]
,
Peter Danenberg [aut, cph],
Gabor Csardi [aut],
Manuel Eugster [aut, cph],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between roxygen2 versions 7.2.1 dated 2022-07-18 and 7.2.2 dated 2022-11-11
DESCRIPTION | 11 +- MD5 | 42 +++++----- NEWS.md | 7 + R/block.R | 2 R/options.R | 8 - R/rd-include-rmd.R | 13 ++- build/vignette.rds |binary inst/doc/extending.html | 124 +++++++++++++++-------------- inst/doc/index-crossref.Rmd | 4 inst/doc/index-crossref.html | 128 ++++++++++++++++-------------- inst/doc/namespace.html | 124 +++++++++++++++-------------- inst/doc/rd-formatting.html | 134 ++++++++++++++++---------------- inst/doc/rd-other.html | 124 +++++++++++++++-------------- inst/doc/rd.html | 124 +++++++++++++++-------------- inst/doc/reuse.html | 124 +++++++++++++++-------------- inst/doc/roxygen2.html | 124 +++++++++++++++-------------- man/load_options.Rd | 8 - man/roxy_block.Rd | 2 tests/testthat/_snaps/markdown-code.md | 6 - tests/testthat/_snaps/rd-include-rmd.md | 13 ++- tests/testthat/test-rd-include-rmd.R | 22 +++++ vignettes/index-crossref.Rmd | 4 22 files changed, 619 insertions(+), 529 deletions(-)
Title: Interface to the 'JWSACruncher' of 'JDemetra+'
Description: 'JDemetra+' (<https://github.com/jdemetra/jdemetra-app>) is the seasonal adjustment software officially recommended
to the members of the European Statistical System and the European System of Central Banks. Seasonal adjustment models performed
with 'JDemetra+' can be stored into workspaces. 'JWSACruncher' (<https://github.com/jdemetra/jwsacruncher/releases>) is a console tool that
re-estimates all the multi-processing defined in a workspace and to export the result. 'rjwsacruncher' allows to launch easily the 'JWSACruncher'.
Author: Alain Quartier-la-Tente [aut, cre]
,
Institut national de la statistique et des etudes economiques [cph]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Diff between rjwsacruncher versions 0.1.2 dated 2021-09-11 and 0.1.3 dated 2022-11-11
DESCRIPTION | 8 MD5 | 14 NEWS.md | 6 R/Cruncher.R | 2 R/download_cruncher.R | 10 build/vignette.rds |binary inst/doc/run_jwsacruncher.html | 1427 +++++++++++++++++++++++++++++++++++++++-- man/configure_jwsacruncher.Rd | 10 8 files changed, 1409 insertions(+), 68 deletions(-)
Title: Interface to 'JDemetra+' Seasonal Adjustment Software
Description: Interface around 'JDemetra+' (<https://github.com/jdemetra/jdemetra-app>), the seasonal adjustment software officially
recommended to the members of the European Statistical System (ESS) and the European System of Central Banks.
It offers full access to all options and outputs of 'JDemetra+', including the two leading seasonal adjustment methods
TRAMO/SEATS+ and X-12ARIMA/X-13ARIMA-SEATS.
Author: Alain Quartier-la-Tente [aut, cre]
,
Anna Michalek [aut],
Jean Palate [aut],
Raf Baeyens [aut]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Diff between RJDemetra versions 0.2.0 dated 2022-03-25 and 0.2.1 dated 2022-11-11
DESCRIPTION | 8 MD5 | 50 - NEWS.md | 238 ++--- R/export_workspace.R | 704 +++++++-------- R/import_workspace.R | 962 ++++++++++----------- R/regarima.R | 1046 +++++++++++------------ R/regarima_specTS.R | 1750 +++++++++++++++++++-------------------- R/regarima_specX13.R | 1786 ++++++++++++++++++++-------------------- R/saveSpec.R | 394 ++++---- R/spec.R | 986 +++++++++++----------- R/tramoseats.R | 454 +++++----- R/tramoseats_spec.R | 1072 ++++++++++++------------ R/x13.R | 458 +++++----- R/x13_spec.R | 982 ++++++++++----------- R/z_onLoad.R | 46 - README.md | 2 man/plot.Rd | 6 man/regarima.Rd | 478 +++++----- man/regarima_spec_tramoseats.Rd | 942 ++++++++++----------- man/regarima_spec_x13.Rd | 926 ++++++++++---------- man/save_spec.Rd | 192 ++-- man/specification.Rd | 314 +++---- man/tramoseats.Rd | 278 +++--- man/tramoseats_spec.Rd | 916 ++++++++++---------- man/x13.Rd | 268 ++---- man/x13_spec.Rd | 1010 +++++++++++----------- 26 files changed, 8135 insertions(+), 8133 deletions(-)
Title: Various Programming Utilities
Description: Utility functions useful when programming and developing R packages.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.utils versions 2.12.1 dated 2022-10-30 and 2.12.2 dated 2022-11-11
R.utils-2.12.1/R.utils/man/warnings.Verbose.Rd |only R.utils-2.12.2/R.utils/DESCRIPTION | 10 +++++----- R.utils-2.12.2/R.utils/MD5 | 20 ++++++++++---------- R.utils-2.12.2/R.utils/NAMESPACE | 1 + R.utils-2.12.2/R.utils/NEWS.md | 14 +++++++++++++- R.utils-2.12.2/R.utils/R/SmartComments.R | 2 -- R.utils-2.12.2/R.utils/R/Verbose.R | 12 ++++++++++-- R.utils-2.12.2/R.utils/man/MultiVerbose.Rd | 2 +- R.utils-2.12.2/R.utils/man/NullVerbose.Rd | 2 +- R.utils-2.12.2/R.utils/man/Verbose.Rd | 2 +- R.utils-2.12.2/R.utils/man/parse.SmartComments.Rd | 2 -- R.utils-2.12.2/R.utils/man/printWarnings.Verbose.Rd |only 12 files changed, 42 insertions(+), 25 deletions(-)
Title: Tools for Splitting, Applying and Combining Data
Description: A set of tools that solves a common set of problems: you need
to break a big problem down into manageable pieces, operate on each
piece and then put all the pieces back together. For example, you
might want to fit a model to each spatial location or time point in
your study, summarise data by panels or collapse high-dimensional
arrays to simpler summary statistics. The development of 'plyr' has
been generously supported by 'Becton Dickinson'.
Author: Hadley Wickham [aut, cre]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between plyr versions 1.8.7 dated 2022-03-25 and 1.8.8 dated 2022-11-11
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/progress.r | 2 +- README.md | 2 +- man/progress_win.Rd | 2 +- tests/testthat/test-rbind.r | 4 +++- 7 files changed, 20 insertions(+), 14 deletions(-)
Title: Fasano-Franceschini Test: A Multidimensional Kolmogorov-Smirnov
Two-Sample Test
Description: An implementation of the two-sample multidimensional
Kolmogorov-Smirnov test described by Fasano and Franceschini (1987)
<doi:10.1093/mnras/225.1.155>. This test evaluates the null hypothesis
that two i.i.d. random samples were drawn from the same underlying
probability distribution. The data can be of any dimension, and can be
of any type (continuous, discrete, or mixed).
Author: Connor Puritz [aut, cre] ,
Elan Ness-Cohn [aut] ,
Rosemary Braun [ctb, ths] ,
Luca Weihs [cph]
Maintainer: Connor Puritz <connorpuritz2025@u.northwestern.edu>
Diff between fasano.franceschini.test versions 2.1.0 dated 2022-09-29 and 2.1.1 dated 2022-11-11
DESCRIPTION | 6 ++--- MD5 | 24 ++++++++++---------- NEWS.md | 5 ++++ R/ff_function.R | 9 +++++-- README.md | 2 - man/fasano.franceschini.test.Rd | 4 +-- src/distance.h | 6 ++--- src/ff_internal_functions.cpp | 4 +-- tests/testthat/test_2d_brute.R | 4 +++ tests/testthat/test_2d_naive.R | 4 +++ tests/testthat/test_3d_naive.R | 4 +++ tests/testthat/test_errors.R | 46 ++++++++++++++++++++++++++++++---------- tests/testthat/test_high_dim.R | 39 ++++++++++++++++++++++++++------- 13 files changed, 112 insertions(+), 45 deletions(-)
More information about fasano.franceschini.test at CRAN
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Title: Modelling Functions that Work with the Pipe
Description: Functions for modelling that help you seamlessly integrate
modelling into a pipeline of data manipulation and visualisation.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between modelr versions 0.1.9 dated 2022-08-19 and 0.1.10 dated 2022-11-11
DESCRIPTION | 11 ++++---- MD5 | 40 +++++++++++++++---------------- NEWS.md | 4 +++ R/formulas.R | 7 ----- R/permute.R | 2 - README.md | 6 ---- man/permute.Rd | 2 - tests/testthat.R | 8 ++++++ tests/testthat/test-cross-validate.R | 2 - tests/testthat/test-data-grid.R | 2 - tests/testthat/test-formulas.R | 4 --- tests/testthat/test-geom-ref-line.R | 2 - tests/testthat/test-model-matrix.R | 2 - tests/testthat/test-na-warn.R | 2 - tests/testthat/test-predictions.R | 2 - tests/testthat/test-resample-partition.R | 2 - tests/testthat/test-resampling.R | 2 - tests/testthat/test-residuals.R | 2 - tests/testthat/test-response_var.R | 2 - tests/testthat/test-seq-range.R | 2 - tests/testthat/test-typical.R | 6 +--- 21 files changed, 45 insertions(+), 67 deletions(-)
Title: Non-Astonishing Results in R
Description: Simple tools for converting columns to new data types. Intuitive functions for columns with missing values.
Author: David Sjoberg
Maintainer: David Sjoberg <dav.sjob@gmail.com>
Diff between hablar versions 0.3.0 dated 2020-03-19 and 0.3.1 dated 2022-11-11
hablar-0.3.0/hablar/NEWS.md |only hablar-0.3.1/hablar/DESCRIPTION | 9 hablar-0.3.1/hablar/LICENSE | 4 hablar-0.3.1/hablar/MD5 | 73 hablar-0.3.1/hablar/NAMESPACE | 2 hablar-0.3.1/hablar/R/hablar.R | 3220 +++++----- hablar-0.3.1/hablar/README.md | 409 - hablar-0.3.1/hablar/build/vignette.rds |binary hablar-0.3.1/hablar/inst/doc/convert.R | 120 hablar-0.3.1/hablar/inst/doc/convert.Rmd | 278 hablar-0.3.1/hablar/inst/doc/convert.html | 1049 +-- hablar-0.3.1/hablar/inst/doc/hablar.R | 126 hablar-0.3.1/hablar/inst/doc/hablar.Rmd | 300 hablar-0.3.1/hablar/inst/doc/hablar.html | 1086 ++- hablar-0.3.1/hablar/inst/doc/retype.R | 128 hablar-0.3.1/hablar/inst/doc/retype.Rmd | 264 hablar-0.3.1/hablar/inst/doc/retype.html | 3360 +++++------ hablar-0.3.1/hablar/inst/doc/s.R | 246 hablar-0.3.1/hablar/inst/doc/s.Rmd | 480 - hablar-0.3.1/hablar/inst/doc/s.html | 1140 ++- hablar-0.3.1/hablar/man/as_reliable.Rd | 6 hablar-0.3.1/hablar/man/could_this_be_that.Rd | 3 hablar-0.3.1/hablar/man/given.Rd | 7 hablar-0.3.1/hablar/tests/testthat.R | 8 hablar-0.3.1/hablar/tests/testthat/test.check_df.R | 388 - hablar-0.3.1/hablar/tests/testthat/test.convert.R | 394 - hablar-0.3.1/hablar/tests/testthat/test.could_this_be_that.R | 203 hablar-0.3.1/hablar/tests/testthat/test.create_dummy.R | 86 hablar-0.3.1/hablar/tests/testthat/test.find_in_df.R | 426 - hablar-0.3.1/hablar/tests/testthat/test.n_unique.R | 30 hablar-0.3.1/hablar/tests/testthat/test.rationalize.R | 112 hablar-0.3.1/hablar/tests/testthat/test.retype.R | 265 hablar-0.3.1/hablar/tests/testthat/test.s.R | 32 hablar-0.3.1/hablar/tests/testthat/test.session_funs.R | 16 hablar-0.3.1/hablar/vignettes/convert.Rmd | 278 hablar-0.3.1/hablar/vignettes/hablar.Rmd | 300 hablar-0.3.1/hablar/vignettes/retype.Rmd | 264 hablar-0.3.1/hablar/vignettes/s.Rmd | 480 - 38 files changed, 8010 insertions(+), 7582 deletions(-)
Title: Interacting with BibTeX Databases
Description: Reading and writing BibTeX files using data frames in R sessions.
Author: Miguel Alvarez [aut, cre]
Maintainer: Miguel Alvarez <kamapu78@gmail.com>
Diff between biblio versions 0.0.6 dated 2021-12-17 and 0.0.7 dated 2022-11-11
biblio-0.0.6/biblio/R/update.R |only biblio-0.0.6/biblio/man/update.Rd |only biblio-0.0.6/biblio/tests |only biblio-0.0.7/biblio/DESCRIPTION | 14 +- biblio-0.0.7/biblio/MD5 | 57 +++++------ biblio-0.0.7/biblio/NAMESPACE | 13 +- biblio-0.0.7/biblio/NEWS.md | 16 +++ biblio-0.0.7/biblio/R/classes.R | 18 +-- biblio-0.0.7/biblio/R/compare_df.R | 171 ++++++++++++++++----------------- biblio-0.0.7/biblio/R/data.R | 24 ++-- biblio-0.0.7/biblio/R/detect_keys.R | 95 +++++++++--------- biblio-0.0.7/biblio/R/imports.R | 7 - biblio-0.0.7/biblio/R/internal.R | 27 ++--- biblio-0.0.7/biblio/R/print.R | 107 ++++++++++++-------- biblio-0.0.7/biblio/R/read_bib.R | 154 +++++++++++++++-------------- biblio-0.0.7/biblio/R/reflist.R | 161 ++++++++++++++++--------------- biblio-0.0.7/biblio/R/sysdata.rda |binary biblio-0.0.7/biblio/R/update_data.R |only biblio-0.0.7/biblio/R/write_bib.R | 93 +++++++++-------- biblio-0.0.7/biblio/build/partial.rdb |binary biblio-0.0.7/biblio/data/synopsis.rda |binary biblio-0.0.7/biblio/man/compare_df.Rd | 5 biblio-0.0.7/biblio/man/detect_keys.Rd | 1 biblio-0.0.7/biblio/man/insert_rows.Rd |only biblio-0.0.7/biblio/man/print.Rd | 3 biblio-0.0.7/biblio/man/read_bib.Rd | 7 - biblio-0.0.7/biblio/man/reflist.Rd | 34 ++---- biblio-0.0.7/biblio/man/synopsis.Rd | 6 - biblio-0.0.7/biblio/man/update_data.Rd |only biblio-0.0.7/biblio/man/write_bib.Rd | 11 -- 30 files changed, 543 insertions(+), 481 deletions(-)
Title: 'IUCN' Red List Client
Description: 'IUCN' Red List (<http://apiv3.iucnredlist.org/api/v3/docs>) client.
The 'IUCN' Red List is a global list of threatened and endangered species.
Functions cover all of the Red List 'API' routes. An 'API' key is required.
Author: William Gearty [aut, cre],
Scott Chamberlain [aut],
rOpenSci [fnd] ,
Maelle Salmon [ctb]
Maintainer: William Gearty <willgearty@gmail.com>
Diff between rredlist versions 0.7.0 dated 2020-10-29 and 0.7.1 dated 2022-11-11
DESCRIPTION | 21 LICENSE | 4 MD5 | 236 NAMESPACE | 84 NEWS.md | 231 R/rl_citation.R | 24 R/rl_common_names.R | 46 R/rl_comp_groups.R | 62 R/rl_countries.R | 40 R/rl_growth_forms.R | 68 R/rl_habitats.R | 58 R/rl_history.R | 58 R/rl_key.R | 42 R/rl_measures.R | 58 R/rl_narrative.R | 58 R/rl_occ_country.R | 60 R/rl_regions.R | 42 R/rl_search.R | 60 R/rl_sp.R | 130 R/rl_sp_category.R | 54 R/rl_sp_citation.R | 58 R/rl_sp_count.R | 40 R/rl_sp_country.R | 64 R/rl_synonyms.R | 48 R/rl_threats.R | 60 R/rl_version.R | 22 R/rredlist-package.R | 114 R/zzz.R | 212 README.md | 84 man/rl_citation.Rd | 44 man/rl_common_names.Rd | 76 man/rl_comp_groups.Rd | 88 man/rl_countries.Rd | 72 man/rl_growth_forms.Rd | 122 man/rl_habitats.Rd | 118 man/rl_history.Rd | 106 man/rl_measures.Rd | 112 man/rl_narrative.Rd | 112 man/rl_occ_country.Rd | 108 man/rl_regions.Rd | 74 man/rl_search.Rd | 106 man/rl_sp.Rd | 98 man/rl_sp_category.Rd | 70 man/rl_sp_citation.Rd | 112 man/rl_sp_count.Rd | 72 man/rl_sp_country.Rd | 94 man/rl_synonyms.Rd | 78 man/rl_threats.Rd | 114 man/rl_use_iucn.Rd | 32 man/rl_version.Rd | 44 man/rredlist-package.Rd | 152 tests/fixtures/rl_citation.yml | 68 tests/fixtures/rl_common_names-badkey.yml | 68 tests/fixtures/rl_common_names-no-results.yml | 62 tests/fixtures/rl_common_names-not-parsing.yml | 66 tests/fixtures/rl_common_names.yml | 66 tests/fixtures/rl_common_names_-badkey.yml | 62 tests/fixtures/rl_common_names_.yml | 66 tests/fixtures/rl_countries-not-parsing.yml | 188 tests/fixtures/rl_countries.yml | 188 tests/fixtures/rl_countries_.yml | 188 tests/fixtures/rl_growth_forms-no-results.yml | 62 tests/fixtures/rl_growth_forms-not-parsing.yml | 62 tests/fixtures/rl_growth_forms.yml | 62 tests/fixtures/rl_growth_forms_.yml | 64 tests/fixtures/rl_habitats-not-found.yml | 62 tests/fixtures/rl_habitats-not-parsing.yml | 80 tests/fixtures/rl_habitats.yml | 80 tests/fixtures/rl_habitats_-region-not-found.yml | 64 tests/fixtures/rl_habitats_.yml | 80 tests/fixtures/rl_history-by-id.yml | 62 tests/fixtures/rl_history-not-parsing.yml | 62 tests/fixtures/rl_history-region-together.yml | 122 tests/fixtures/rl_history.yml | 62 tests/fixtures/rl_history_.yml | 62 tests/fixtures/rl_measures-no-results.yml | 62 tests/fixtures/rl_measures-not-parsing.yml | 70 tests/fixtures/rl_measures.yml | 70 tests/fixtures/rl_measures_-region-not-found.yml | 64 tests/fixtures/rl_measures_.yml | 70 tests/fixtures/rl_narrative-no-results.yml | 62 tests/fixtures/rl_narrative-not-parsing.yml | 484 tests/fixtures/rl_narrative.yml | 484 tests/fixtures/rl_narrative_.yml | 484 tests/fixtures/rl_search-no-results.yml | 62 tests/fixtures/rl_search-not-parsing.yml | 68 tests/fixtures/rl_search.yml | 68 tests/fixtures/rl_search_-region-not-found.yml | 64 tests/fixtures/rl_search_.yml | 68 tests/fixtures/rl_sp_category-no-results.yml | 62 tests/fixtures/rl_sp_category-not-parsing.yml |27666 +++++++++++------------ tests/fixtures/rl_sp_category.yml |27666 +++++++++++------------ tests/fixtures/rl_sp_category_.yml |27666 +++++++++++------------ tests/fixtures/rl_synonyms-no-results.yml | 62 tests/fixtures/rl_synonyms-not-parsing.yml | 68 tests/fixtures/rl_synonyms.yml | 68 tests/fixtures/rl_synonyms_.yml | 68 tests/fixtures/rl_threats-no-results.yml | 62 tests/fixtures/rl_threats-not-parsing.yml | 128 tests/fixtures/rl_threats.yml | 128 tests/fixtures/rl_threats_.yml | 128 tests/fixtures/rl_version.yml | 62 tests/test-all.R | 4 tests/testthat/helper-rredlist.R | 34 tests/testthat/test-fail-well.R | 96 tests/testthat/test-rl_citation.R | 38 tests/testthat/test-rl_common_names.R | 140 tests/testthat/test-rl_countries.R | 102 tests/testthat/test-rl_growth_forms.R | 162 tests/testthat/test-rl_habitat.R | 162 tests/testthat/test-rl_history.R | 212 tests/testthat/test-rl_key.R | 12 tests/testthat/test-rl_measures.R | 162 tests/testthat/test-rl_narrative.R | 168 tests/testthat/test-rl_search.R | 168 tests/testthat/test-rl_sp_category.R | 158 tests/testthat/test-rl_synonyms.R | 154 tests/testthat/test-rl_threats.R | 162 tests/testthat/test-rl_version.R | 36 119 files changed, 47072 insertions(+), 47062 deletions(-)
Title: Client for Various 'CrossRef' 'APIs'
Description: Client for various 'CrossRef' 'APIs', including 'metadata' search
with their old and newer search 'APIs', get 'citations' in various formats
(including 'bibtex', 'citeproc-json', 'rdf-xml', etc.), convert 'DOIs'
to 'PMIDs', and 'vice versa', get citations for 'DOIs', and get links to
full text of articles when available.
Author: Scott Chamberlain [aut],
Hao Zhu [aut],
Najko Jahn [aut, cre] ,
Carl Boettiger [aut],
Karthik Ram [aut]
Maintainer: Najko Jahn <najko.jahn@gmail.com>
Diff between rcrossref versions 1.1.0 dated 2020-10-02 and 1.2.0 dated 2022-11-11
rcrossref-1.1.0/rcrossref/tests/fixtures/cr_agency_email_is_validated.yml |only rcrossref-1.1.0/rcrossref/tests/fixtures/cr_funders_email_is_validated.yml |only rcrossref-1.1.0/rcrossref/tests/fixtures/cr_funders_faceting.yml |only rcrossref-1.1.0/rcrossref/tests/fixtures/cr_journals_fails_well.yml |only rcrossref-1.1.0/rcrossref/tests/fixtures/cr_types_fails_well.yml |only rcrossref-1.1.0/rcrossref/tests/fixtures/cr_works_email_is_validated.yml |only rcrossref-1.1.0/rcrossref/tests/fixtures/id_converter_fails_well.yml |only rcrossref-1.2.0/rcrossref/DESCRIPTION | 24 rcrossref-1.2.0/rcrossref/LICENSE | 2 rcrossref-1.2.0/rcrossref/MD5 | 194 rcrossref-1.2.0/rcrossref/NEWS.md | 8 rcrossref-1.2.0/rcrossref/R/cr_abstract.R | 2 rcrossref-1.2.0/rcrossref/R/cr_cn.r | 5 rcrossref-1.2.0/rcrossref/R/cr_works.R | 15 rcrossref-1.2.0/rcrossref/R/zzz.R | 46 rcrossref-1.2.0/rcrossref/README.md | 6 rcrossref-1.2.0/rcrossref/man/cr_abstract.Rd | 13 rcrossref-1.2.0/rcrossref/man/cr_cn.Rd | 5 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_abstract.yml | 381 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_abstract_not_found.yml | 39 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_agency.yml | 114 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_agency_email_works.yml | 38 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_agency_fails_well.yml | 81 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_agency_length.yml | 76 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_agency_null_works.yml | 27 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_citation_count.yml | 164 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_citation_count_fails_well.yml | 16 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_cn_bibentry.yml | 80 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_cn_citeproc_json.yml | 239 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_cn_different_base_urls.yml | 676 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_cn_doi_agency_check.yml | 80 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_cn_fails_well.yml | 38 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_cn_no_agency_still_work.yml | 78 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_cn_xml_types.yml | 946 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_funders.yml | 638 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_funders_email_null_works.yml | 54 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_funders_email_works.yml | 65 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_funders_fails_well.yml | 38 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_funders_with_cursor_and_progress_bar.yml | 7268 - rcrossref-1.2.0/rcrossref/tests/fixtures/cr_journals.yml | 135 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_journals_faceting.yml | 39 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_journals_issn_behavior.yml | 428 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_journals_issn_workstrue_behavior.yml | 1767 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_journals_metadata.yml | 53 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_journals_pagination.yml | 751 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_journals_warns_well.yml | 386 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_journals_with_cursor_and_progress_bar.yml |19751 +-- rcrossref-1.2.0/rcrossref/tests/fixtures/cr_licenses.yml | 103 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_licenses_fails_well.yml | 40 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_members.yml | 4595 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_members_fails_well.yml | 992 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_members_with_cursor.yml |41517 +++----- rcrossref-1.2.0/rcrossref/tests/fixtures/cr_members_with_cursor_and_progress_bar.yml | 6539 - rcrossref-1.2.0/rcrossref/tests/fixtures/cr_members_with_cursor_fails_well.yml | 49 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_prefixes.yml | 38 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_prefixes_faceting.yml | 223 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_prefixes_fails_well.yml | 139 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_prefixes_metadata.yml | 171 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_prefixes_pagination.yml | 295 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_prefixes_with_cursor_and_progress_bar.yml | 3609 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_r.yml | 3992 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_r_fails_well.yml | 39 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_r_limit_default.yml | 350 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_types.yml | 91 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_types_faceting.yml |30076 +++++ rcrossref-1.2.0/rcrossref/tests/fixtures/cr_types_metadata.yml | 116 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_types_pagination.yml | 116 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_types_with_cursor_and_progress_bar.yml | 6095 - rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works.yml | 5933 - rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works_.yml | 3586 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works__fails_well.yml | 39 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works__parses_funders.yml | 99 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works__parses_links.yml | 141 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works__warns_well.yml | 363 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works_email_null_works.yml | 3131 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works_email_works.yml | 2752 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works_empty_funder.yml | 64 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works_fails_well.yml | 77 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works_no_content_domain_fail.yml |only rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works_param_select.yml | 80 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works_parses_affilitation.yml | 47 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works_parses_funders.yml | 923 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works_parses_links.yml | 295 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works_warns_well.yml | 363 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works_with_cursor.yml |51370 ++++++---- rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works_with_cursor_and_progress_bar.yml | 4429 rcrossref-1.2.0/rcrossref/tests/fixtures/cr_works_with_cursor_fails_well.yml | 44 rcrossref-1.2.0/rcrossref/tests/fixtures/id_converter.yml | 24 rcrossref-1.2.0/rcrossref/tests/fixtures/id_converter_fails_type_param_bad.yml | 18 rcrossref-1.2.0/rcrossref/tests/testthat/test-cr_abstract.R | 2 rcrossref-1.2.0/rcrossref/tests/testthat/test-cr_agency.R | 22 rcrossref-1.2.0/rcrossref/tests/testthat/test-cr_cn.R | 18 rcrossref-1.2.0/rcrossref/tests/testthat/test-cr_funders.R | 49 rcrossref-1.2.0/rcrossref/tests/testthat/test-cr_journals.R | 25 rcrossref-1.2.0/rcrossref/tests/testthat/test-cr_members.R | 4 rcrossref-1.2.0/rcrossref/tests/testthat/test-cr_members_cursor.R | 3 rcrossref-1.2.0/rcrossref/tests/testthat/test-cr_prefixes.R | 13 rcrossref-1.2.0/rcrossref/tests/testthat/test-cr_r.R | 4 rcrossref-1.2.0/rcrossref/tests/testthat/test-cr_types.R | 3 rcrossref-1.2.0/rcrossref/tests/testthat/test-cr_works.R | 57 rcrossref-1.2.0/rcrossref/tests/testthat/test-cr_works_.R | 2 rcrossref-1.2.0/rcrossref/tests/testthat/test-id_converter.R | 2 102 files changed, 127089 insertions(+), 80844 deletions(-)
Title: Data Visualization Tools for Statistical Analysis Results
Description: Unified plotting tools for statistics commonly used, such as GLM,
time series, PCA families, clustering and survival analysis. The package offers
a single plotting interface for these analysis results and plots in a unified
style using 'ggplot2'.
Author: Masaaki Horikoshi [aut],
Yuan Tang [aut, cre] ,
Austin Dickey [ctb],
Matthias Grenie [ctb],
Ryan Thompson [ctb],
Luciano Selzer [ctb],
Dario Strbenac [ctb],
Kirill Voronin [ctb],
Damir Pulatov [ctb]
Maintainer: Yuan Tang <terrytangyuan@gmail.com>
Diff between ggfortify versions 0.4.14 dated 2022-01-03 and 0.4.15 dated 2022-11-11
DESCRIPTION | 19 +- MD5 | 182 +++++++++++----------- NAMESPACE | 2 NEWS.md | 5 R/base_fortify_list.R | 12 - R/base_fortify_ts.R | 16 -- R/fortify_MSwM.R | 2 R/fortify_base.R | 2 R/fortify_basis.R | 6 R/fortify_changepoint.R | 6 R/fortify_cluster.R | 8 + R/fortify_forecast.R | 4 R/fortify_glmnet.R | 14 + R/fortify_stats.R | 15 + R/fortify_stats_density.R | 17 +- R/fortify_stats_lm.R | 2 R/fortify_surv.R | 46 +++-- R/fortify_vars.R | 4 R/ggfortify.R | 2 R/tslib.R | 23 ++ build/vignette.rds |binary inst/doc/basics.R | 26 +-- inst/doc/basics.Rmd | 26 +-- inst/doc/basics.html | 140 ++++------------- inst/doc/plot_dist.html | 44 +---- inst/doc/plot_lm.html | 52 ++---- inst/doc/plot_map.R | 14 - inst/doc/plot_map.Rmd | 14 - inst/doc/plot_map.html | 112 ++++---------- inst/doc/plot_pca.R | 41 ++--- inst/doc/plot_pca.Rmd | 41 ++--- inst/doc/plot_pca.html | 202 +++++++------------------ inst/doc/plot_surv.R | 6 inst/doc/plot_surv.Rmd | 6 inst/doc/plot_surv.html | 51 ++---- inst/doc/plot_ts.R | 82 +++------- inst/doc/plot_ts.Rmd | 98 +++--------- inst/doc/plot_ts.html | 309 ++++++++++----------------------------- man/as_tibble.basis.Rd | 2 man/autoplot.aareg.Rd | 7 man/autoplot.acf.Rd | 2 man/autoplot.basis.Rd | 2 man/autoplot.breakpoints.Rd | 2 man/autoplot.cpt.Rd | 2 man/autoplot.cv.glmnet.Rd | 4 man/autoplot.forecast.Rd | 2 man/autoplot.glmnet.Rd | 2 man/autoplot.kmeans.Rd | 2 man/autoplot.silhouette.Rd | 2 man/autoplot.spec.Rd | 2 man/autoplot.survfit.Rd | 15 + man/autoplot.tsmodel.Rd | 2 man/autoplot.varprd.Rd | 2 man/confint.acf.Rd | 2 man/fitted.ar.Rd | 2 man/fortify.MSM.lm.Rd | 2 man/fortify.aareg.Rd | 9 - man/fortify.acf.Rd | 2 man/fortify.basis.Rd | 2 man/fortify.cpt.Rd | 2 man/fortify.cv.glmnet.Rd | 4 man/fortify.factanal.Rd | 2 man/fortify.forecast.Rd | 2 man/fortify.glmnet.Rd | 2 man/fortify.kmeans.Rd | 2 man/fortify.prcomp.Rd | 2 man/fortify.silhouette.Rd | 2 man/fortify.spec.Rd | 2 man/fortify.survfit.Rd | 13 + man/fortify.ts.Rd | 2 man/fortify.tsmodel.Rd | 2 man/fortify.varprd.Rd | 2 man/get.dtindex.Rd | 2 man/get.dtindex.continuous.Rd | 2 man/ggcpgram.Rd | 2 man/ggdistribution.Rd | 21 ++ man/ggfreqplot.Rd | 2 man/ggtsdiag.Rd | 2 man/is.univariate.Rd | 2 man/rbind_ts.Rd | 2 man/residuals.ar.Rd | 2 tests/testthat/test-base-infer.R | 49 ------ tests/testthat/test-cluster.R | 2 tests/testthat/test-plotlib.R | 6 tests/testthat/test-stats-lm.R | 12 - tests/testthat/test-stats.R | 2 tests/testthat/test-tslib.R | 7 vignettes/basics.Rmd | 26 +-- vignettes/plot_map.Rmd | 14 - vignettes/plot_pca.Rmd | 41 ++--- vignettes/plot_surv.Rmd | 6 vignettes/plot_ts.Rmd | 98 +++--------- 92 files changed, 871 insertions(+), 1188 deletions(-)
Title: 'ggplot2' Extension for Seasonal and Trading Day Adjustment with
'RJDemetra'
Description: Provides 'ggplot2' functions to return the results of seasonal and trading day adjustment
made by 'RJDemetra'. 'RJDemetra' is an 'R' interface around 'JDemetra+' (<https://github.com/jdemetra/jdemetra-app>),
the seasonal adjustment software officially recommended to the members of the European Statistical System and
the European System of Central Banks.
Author: Alain Quartier-la-Tente [aut, cre]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Diff between ggdemetra versions 0.2.2 dated 2020-12-02 and 0.2.3 dated 2022-11-11
DESCRIPTION | 14 +- MD5 | 25 ++-- NAMESPACE | 26 ++++ NEWS.md | 6 + R/autoplot.R |only R/extract_cmp.R |only R/seasonal_adjustment.R | 3 R/ts2df.R | 4 README.md | 19 ++- build/vignette.rds |binary inst/doc/ggdemetra.Rmd | 4 inst/doc/ggdemetra.html | 202 +++++++++++++++++++++++--------------- man/autoplot.SA.Rd |only man/components.Rd |only man/figures/README-autoplot-1.png |only vignettes/ggdemetra.Rmd | 4 16 files changed, 200 insertions(+), 107 deletions(-)
Title: Global Optimization by Differential Evolution
Description: Implements the Differential Evolution algorithm for global
optimization of a real-valued function of a real-valued parameter
vector as described in Mullen et al. (2011) <doi:10.18637/jss.v040.i06>.
Author: David Ardia [aut] ,
Katharine Mullen [aut, cre],
Brian Peterson [aut],
Joshua Ulrich [aut],
Kris Boudt [ctb]
Maintainer: Katharine Mullen <mullenkate@gmail.com>
Diff between DEoptim versions 2.2-7 dated 2022-11-06 and 2.2-8 dated 2022-11-11
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 - NEWS | 5 ++++- R/DEoptim.R | 14 +++++++++----- src/de4_0.c | 7 +++---- 6 files changed, 26 insertions(+), 21 deletions(-)
Title: Access the 'Quickbase' JSON API
Description: Programmatically access the 'Quickbase' JSON API <https://developer.quickbase.com>.
You supply parameters for an API call, 'qbr' delivers an http request to the
API endpoint and returns its response. Outputs follow 'tidyverse' philosophy.
Author: John Erdmann [aut, cre],
Keene State College [cph, fnd]
Maintainer: John Erdmann <john.erdmann@keene.edu>
Diff between qbr versions 1.1.0 dated 2022-06-30 and 1.2.0 dated 2022-11-11
DESCRIPTION | 12 ++++---- MD5 | 47 ++++++++++++++++++------------- NAMESPACE | 4 ++ NEWS.md | 8 +++++ R/glob_vars.R | 14 ++++++++- R/qb_apps.R | 72 ++++++++++++++++++++++++++++++++++++++++++++++-- R/qb_extras.R |only R/qb_fields.R |only R/qb_reports.R | 8 ++--- R/qb_tables.R |only R/qb_users.R | 2 - R/qb_usertoken.R | 6 ++-- README.md | 17 ++++++++--- man/clone_token.Rd | 2 - man/copy_app.Rd | 2 - man/deactivate_token.Rd | 2 - man/delete_app.Rd | 2 - man/delete_token.Rd | 2 - man/get_app.Rd |only man/get_app_events.Rd | 2 - man/get_fields.Rd |only man/get_report.Rd | 2 - man/get_reports.Rd | 2 - man/get_tables.Rd |only man/get_users.Rd | 2 - man/qb_run.Rd | 2 - man/run_report.Rd | 2 - man/summarize_app.Rd |only 28 files changed, 158 insertions(+), 54 deletions(-)
Title: Optimal Subset Selection for Transformation Models
Description: Greedy optimal subset selection for transformation models
(Hothorn et al., 2018, <doi:10.1111/sjos.12291> ) based on the abess
algorithm (Zhu et al., 2020, <doi:10.1073/pnas.2014241117> ). Applicable to
models from packages 'tram' and 'cotram'.
Author: Lucas Kook [aut, cre],
Sandra Siegfried [ctb],
Torsten Hothorn [ctb]
Maintainer: Lucas Kook <lucasheinrich.kook@uzh.ch>
Diff between tramvs versions 0.0-2 dated 2022-08-22 and 0.0-3 dated 2022-11-11
DESCRIPTION | 6 - MD5 | 10 +- inst/doc/tramvs.Rnw | 169 ++++++++++++++++++++++++++------------------- inst/doc/tramvs.pdf |binary vignettes/bibliography.bib | 8 ++ vignettes/tramvs.Rnw | 169 ++++++++++++++++++++++++++------------------- 6 files changed, 218 insertions(+), 144 deletions(-)
Title: Simplifies Exploratory Data Analysis
Description: Interactive data exploration with one line of code or use an easy
to remember set of tidy functions for exploratory data analysis.
Introduces three main verbs. explore() to graphically explore a variable or
table, describe() to describe a variable or table and report() to create an
automated report.
Author: Roland Krasser
Maintainer: Roland Krasser <roland.krasser@gmail.com>
Diff between explore versions 0.9.0 dated 2022-08-31 and 1.0.0 dated 2022-11-11
explore-0.9.0/explore/man/figures/explore_shiny_iris.png |only explore-0.9.0/explore/man/figures/explore_shiny_iris_target_species.png |only explore-0.9.0/explore/man/figures/explore_shiny_iris_tree.png |only explore-0.9.0/explore/man/figures/report_attributes.png |only explore-0.9.0/explore/man/figures/report_target.png |only explore-1.0.0/explore/DESCRIPTION | 14 explore-1.0.0/explore/MD5 | 113 - explore-1.0.0/explore/NAMESPACE | 4 explore-1.0.0/explore/NEWS.md | 17 explore-1.0.0/explore/R/add-var.R | 25 explore-1.0.0/explore/R/create-data.R | 156 ++ explore-1.0.0/explore/R/explore.R | 109 - explore-1.0.0/explore/R/report.R | 43 explore-1.0.0/explore/R/tools.R | 10 explore-1.0.0/explore/README.md | 124 +- explore-1.0.0/explore/build/vignette.rds |binary explore-1.0.0/explore/inst/doc/explore.R | 104 + explore-1.0.0/explore/inst/doc/explore.Rmd | 137 +- explore-1.0.0/explore/inst/doc/explore.html | 619 +++++++--- explore-1.0.0/explore/inst/doc/explore_mtcars.R | 46 explore-1.0.0/explore/inst/doc/explore_mtcars.Rmd | 52 explore-1.0.0/explore/inst/doc/explore_mtcars.html | 435 +++++-- explore-1.0.0/explore/inst/doc/explore_penguins.R | 12 explore-1.0.0/explore/inst/doc/explore_penguins.Rmd | 16 explore-1.0.0/explore/inst/doc/explore_penguins.html | 381 ++++-- explore-1.0.0/explore/inst/doc/explore_titanic.R | 26 explore-1.0.0/explore/inst/doc/explore_titanic.Rmd | 28 explore-1.0.0/explore/inst/doc/explore_titanic.html | 412 +++++- explore-1.0.0/explore/inst/extdata/template_notebook_explore.Rmd |only explore-1.0.0/explore/inst/extdata/template_notebook_explore.html |only explore-1.0.0/explore/inst/extdata/template_report_target_pct.Rmd | 1 explore-1.0.0/explore/inst/extdata/template_report_target_split.Rmd | 1 explore-1.0.0/explore/inst/extdata/template_report_target_split_n.Rmd | 2 explore-1.0.0/explore/inst/extdata/template_report_variable_n.Rmd | 1 explore-1.0.0/explore/man/add_var_id.Rd | 48 explore-1.0.0/explore/man/add_var_random_01.Rd | 70 - explore-1.0.0/explore/man/add_var_random_cat.Rd | 80 - explore-1.0.0/explore/man/add_var_random_dbl.Rd | 80 - explore-1.0.0/explore/man/add_var_random_int.Rd | 80 - explore-1.0.0/explore/man/add_var_random_moon.Rd |only explore-1.0.0/explore/man/add_var_random_starsign.Rd | 68 - explore-1.0.0/explore/man/balance_target.Rd | 2 explore-1.0.0/explore/man/create_data_app.Rd |only explore-1.0.0/explore/man/create_data_buy.Rd | 128 +- explore-1.0.0/explore/man/create_data_churn.Rd |only explore-1.0.0/explore/man/create_data_empty.Rd | 44 explore-1.0.0/explore/man/create_data_person.Rd | 40 explore-1.0.0/explore/man/create_data_random.Rd | 100 - explore-1.0.0/explore/man/create_notebook_explore.Rd |only explore-1.0.0/explore/man/explore_all.Rd | 4 explore-1.0.0/explore/man/figures/explore-shiny-iris-target-species.png |only explore-1.0.0/explore/man/figures/explore-shiny-iris-tree-01.png |only explore-1.0.0/explore/man/figures/explore-shiny-iris-tree.png |only explore-1.0.0/explore/man/figures/explore-shiny-iris.png |only explore-1.0.0/explore/man/figures/notebook-explore.png |only explore-1.0.0/explore/man/figures/report-attributes.png |only explore-1.0.0/explore/man/figures/report-target-split.png |only explore-1.0.0/explore/man/figures/report-target.png |only explore-1.0.0/explore/man/get_var_buckets.Rd | 56 explore-1.0.0/explore/man/plot_legend_targetpct.Rd | 42 explore-1.0.0/explore/man/weight_target.Rd | 52 explore-1.0.0/explore/tests/testthat/test-add-var.R | 25 explore-1.0.0/explore/tests/testthat/test-create-data.R | 106 + explore-1.0.0/explore/vignettes/explore.Rmd | 137 +- explore-1.0.0/explore/vignettes/explore_mtcars.Rmd | 52 explore-1.0.0/explore/vignettes/explore_penguins.Rmd | 16 explore-1.0.0/explore/vignettes/explore_titanic.Rmd | 28 67 files changed, 2848 insertions(+), 1298 deletions(-)
Title: Detection of Multiple Changes in Slope in Univariate Time-Series
Description: Detects multiple changes in slope using the CPOP dynamic programming approach of Fearnhead, Maidstone, and Letchford (2019) <doi:10.1080/10618600.2018.1512868>. This method finds the best continuous piecewise linear fit to data under a criterion that measures fit to data using the residual sum of squares, but penalizes complexity based on an L0 penalty on changes in slope.
Author: Daniel Grose [aut, cre],
Paul Fearnhead [aut]
Maintainer: Daniel Grose <dan.grose@lancaster.ac.uk>
Diff between cpop versions 1.0.3 dated 2022-08-23 and 1.0.4 dated 2022-11-11
cpop-1.0.3/cpop/inst/doc/article.ltx |only cpop-1.0.3/cpop/inst/doc/article.pdf |only cpop-1.0.3/cpop/vignettes/article.ltx |only cpop-1.0.4/cpop/DESCRIPTION | 12 cpop-1.0.4/cpop/MD5 | 77 ++-- cpop-1.0.4/cpop/NAMESPACE | 4 cpop-1.0.4/cpop/NEWS.md |only cpop-1.0.4/cpop/R/cpop.R | 180 ++++++---- cpop-1.0.4/cpop/R/cpop.crops.R | 14 cpop-1.0.4/cpop/R/cpop.grid.R | 79 ++-- cpop-1.0.4/cpop/R/cpop.grid.minseglen.R | 96 ++--- cpop-1.0.4/cpop/R/data.R | 2 cpop-1.0.4/cpop/build/cpop.pdf |binary cpop-1.0.4/cpop/build/partial.rdb |binary cpop-1.0.4/cpop/build/vignette.rds |binary cpop-1.0.4/cpop/inst/doc/cpop.ltx |only cpop-1.0.4/cpop/inst/doc/cpop.pdf |only cpop-1.0.4/cpop/man/changepoints-methods.Rd | 2 cpop-1.0.4/cpop/man/cost-methods.Rd | 7 cpop-1.0.4/cpop/man/cpop.Rd | 13 cpop-1.0.4/cpop/man/cpop.crops-methods.Rd | 5 cpop-1.0.4/cpop/man/cpop.crops.models-methods.Rd | 2 cpop-1.0.4/cpop/man/estimate-methods.Rd | 5 cpop-1.0.4/cpop/man/fitted-methods.Rd | 4 cpop-1.0.4/cpop/man/plot-methods.Rd | 2 cpop-1.0.4/cpop/man/residuals-methods.Rd | 2 cpop-1.0.4/cpop/man/show-methods.Rd | 5 cpop-1.0.4/cpop/man/simchangeslope.Rd | 2 cpop-1.0.4/cpop/man/summary-methods.Rd | 2 cpop-1.0.4/cpop/man/wavenumber-spectra-data.Rd | 2 cpop-1.0.4/cpop/tests/testthat/test.cpop.R | 4 cpop-1.0.4/cpop/vignettes/cpop.ltx |only cpop-1.0.4/cpop/vignettes/figures/change_in_slope_examples_ggplot.pdf |binary cpop-1.0.4/cpop/vignettes/figures/cpop_CPU_ggplot.pdf |binary cpop-1.0.4/cpop/vignettes/figures/cpop_crops_example_ggplot.pdf |binary cpop-1.0.4/cpop/vignettes/figures/cpop_crops_ggplot.pdf |binary cpop-1.0.4/cpop/vignettes/figures/cpop_example1_ggplot.pdf |binary cpop-1.0.4/cpop/vignettes/figures/cpop_example_uneven_ggplot.pdf |binary cpop-1.0.4/cpop/vignettes/figures/cpop_minseg_ggplot.pdf |binary cpop-1.0.4/cpop/vignettes/figures/cpop_real_data_ggplot.pdf |binary cpop-1.0.4/cpop/vignettes/figures/cpop_uneven_examples_ggplot.pdf |binary cpop-1.0.4/cpop/vignettes/figures/simulate_example_ggplot.pdf |binary cpop-1.0.4/cpop/vignettes/refs.bib | 6 43 files changed, 283 insertions(+), 244 deletions(-)
Title: Methods for Analysing 'EQ-5D' Data and Calculating 'EQ-5D' Index
Scores
Description: EQ-5D is a popular health related quality of life instrument used
in the clinical and economic evaluation of health care. Developed by the
EuroQol group <https://euroqol.org/>, the instrument consists of two
components: health state description and evaluation. For the description
component a subject self-rates their health in terms of five dimensions;
mobility, self-care, usual activities, pain/discomfort, and
anxiety/depression using either a three-level (EQ-5D-3L,
<https://euroqol.org/eq-5d-instruments/eq-5d-3l-about/>) or a five-level
(EQ-5D-5L, <https://euroqol.org/eq-5d-instruments/eq-5d-5l-about/>)
scale. Frequently the scores on these five dimensions are converted to a
single utility index using country specific value sets, which can be used
in the clinical and economic evaluation of health care as well as in
population health surveys. The eq5d package provides methods to calculate
index scores from a subject's dimension scores. 29 TTO and 11 VAS EQ-5D-3L
value [...truncated...]
Author: Fraser Morton [aut, cre],
Jagtar Singh Nijjar [aut]
Maintainer: Fraser Morton <fraser.morton@glasgow.ac.uk>
Diff between eq5d versions 0.12.0 dated 2022-08-08 and 0.13.0 dated 2022-11-11
DESCRIPTION | 28 MD5 | 46 - NEWS.md | 170 +-- R/data.R | 264 ++--- R/eq5d.R | 60 - R/eqpchc.R | 4 R/sysdata.rda |binary README.md | 121 +- build/partial.rdb |only inst/doc/eq5d.html | 777 ++++++++++------- inst/shiny/server.R | 205 ++++ inst/shiny/ui.R | 22 inst/shiny/www/images/shiny_app_dsu_dimension.png |only inst/shiny/www/images/shiny_app_dsu_utility.png |only inst/shiny/www/images/shiny_app_dsu_utility_bwidth.png |only man/CW.Rd | 14 man/DSU3L.Rd | 4 man/DSU5L.Rd | 4 man/TTO.Rd | 75 - man/VAS.Rd | 20 man/VT.Rd | 85 - man/Y.Rd | 7 man/eq5d-package.Rd | 2 man/eq5d.Rd | 16 man/valuesets.Rd | 19 tests/testthat/test-eq5dy.R | 22 26 files changed, 1199 insertions(+), 766 deletions(-)
Title: Modeling the Kinetics of CO2 Production in Alcoholic
Fermentation
Description: Developed to help researchers who need to model the kinetics of carbon dioxide (CO2) production in alcoholic fermentation of wines, beers and other fermented products. The following models are available for modeling the CO2 production curve as a function of time: 5PL, Gompertz and 4PL. This package has different functions, which applied can: perform the modeling of the data obtained in the fermentation and return the coefficients, analyze the model fit and return different statistical metrics, and calculate the kinetic parameters: Maximum production of carbon dioxide; Maximum rate of production of CO2; Moment in which maximum fermentation rate occurs; Duration of the latency phase for CO2 production; CO2 Produced until Maximum fermentation rate occurs. In addition, a function that generates graphs with the observed and predicted data from the models, isolated and combined, is available. Gava, A., Borsato, D., & Ficagna, E. (2020). "Effect of mixture of fining agents on the fermenta [...truncated...]
Author: Angelo Gava [aut, cre]
Maintainer: Angelo Gava <gava.angelogava@gmail.com>
Diff between OenoKPM versions 0.1.2 dated 2021-06-24 and 2.1.1 dated 2022-11-11
DESCRIPTION | 10 +- MD5 | 22 ++-- NAMESPACE | 2 R/Coeff.R | 40 +++++++- R/kp.R | 63 ++++++++------ R/metrics.R | 65 +++++++++----- R/plot_fit.R | 131 +++++++++++------------------ build/partial.rdb |binary man/coeff.Rd | 98 ++++++++++++++------- man/kp.Rd | 176 ++++++++++++++++++++++----------------- man/metrics.Rd | 146 +++++++++++++++++++------------- man/plot_fit.Rd | 242 ++++++++++++++++++++++++------------------------------ 12 files changed, 541 insertions(+), 454 deletions(-)
Title: Some Nonparametric CUSUM Tests for Change-Point Detection in
Possibly Multivariate Observations
Description: Provides nonparametric CUSUM tests for detecting changes
in possibly serially dependent univariate or low-dimensional
multivariate observations. Retrospective tests sensitive to changes
in the expectation, the variance, the covariance, the
autocovariance, the distribution function, Spearman's rho, Kendall's
tau, Gini's mean difference, and the copula are provided, as well as
a test for detecting changes in the distribution of independent
block maxima (with environmental studies in mind). The package also
contains a test sensitive to changes in the autocopula and a
combined test of stationarity sensitive to changes in the
distribution function and the autocopula. The latest additions are
an open-end sequential test based on the retrospective CUSUM
statistic that can be used for monitoring changes in the mean of
possibly serially dependent univariate observations, as well as
closed-end and open-end sequential tests based on empirical
distribution functions that can be used for monitoring [...truncated...]
Author: Ivan Kojadinovic [aut, cre] ,
Alex Verhoijsen [ctb]
Maintainer: Ivan Kojadinovic <ivan.kojadinovic@univ-pau.fr>
Diff between npcp versions 0.2-2 dated 2020-07-16 and 0.2-4 dated 2022-11-11
npcp-0.2-2/npcp/R/seqCpDistTests.R |only npcp-0.2-2/npcp/R/seqCpMeanTests.R |only npcp-0.2-2/npcp/man/seqCpDist.Rd |only npcp-0.2-2/npcp/man/seqCpMean.Rd |only npcp-0.2-2/npcp/src/seqcdftest.c |only npcp-0.2-2/npcp/src/seqmeantest.c |only npcp-0.2-4/npcp/DESCRIPTION | 54 +++++++++------- npcp-0.2-4/npcp/MD5 | 49 ++++++++------- npcp-0.2-4/npcp/NAMESPACE | 90 ++++++++++++++-------------- npcp-0.2-4/npcp/R/seqClosedEndCpDistTests.R |only npcp-0.2-4/npcp/R/seqOpenEndCpDistTests.R |only npcp-0.2-4/npcp/R/seqOpenEndCpMeanTests.R |only npcp-0.2-4/npcp/R/sysdata.rda |binary npcp-0.2-4/npcp/build |only npcp-0.2-4/npcp/data/quantiles.rda |binary npcp-0.2-4/npcp/man/bOptEmpProc.Rd | 12 +-- npcp-0.2-4/npcp/man/cpAutocop.Rd | 5 - npcp-0.2-4/npcp/man/cpBlockMax.Rd | 5 - npcp-0.2-4/npcp/man/cpCopula.Rd | 4 - npcp-0.2-4/npcp/man/cpDist.Rd | 6 - npcp-0.2-4/npcp/man/cpRho.Rd | 4 - npcp-0.2-4/npcp/man/cpU.Rd | 7 +- npcp-0.2-4/npcp/man/quantiles.Rd | 41 +++++++----- npcp-0.2-4/npcp/man/selectPoints.Rd |only npcp-0.2-4/npcp/man/seqClosedEndCpDist.Rd |only npcp-0.2-4/npcp/man/seqOpenEndCpDist.Rd |only npcp-0.2-4/npcp/man/seqOpenEndCpMean.Rd |only npcp-0.2-4/npcp/man/stDistAutocop.Rd | 5 - npcp-0.2-4/npcp/src/Utest.c | 2 npcp-0.2-4/npcp/src/init.c | 10 ++- npcp-0.2-4/npcp/src/npcp.h | 4 + npcp-0.2-4/npcp/src/seqclosedendcdftest.c |only npcp-0.2-4/npcp/src/seqopenendcdftest.c |only npcp-0.2-4/npcp/src/seqopenendmeantest.c |only 34 files changed, 169 insertions(+), 129 deletions(-)
Title: A Portal for Global Governance Data
Description: This is the core package for the many packages universe.
It includes functions to help researchers work with and contribute to
event datasets on global governance.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Bernhard Bieri [ctb] ,
Esther Peev [ctb] ,
Jael Tan [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manydata versions 0.7.5 dated 2022-06-07 and 0.8.1 dated 2022-11-11
manydata-0.7.5/manydata/R/treaties_get.R |only manydata-0.7.5/manydata/man/coalesce_compatible.Rd |only manydata-0.7.5/manydata/man/get_treaty.Rd |only manydata-0.7.5/manydata/tests/testthat/test_get_treaties.R |only manydata-0.8.1/manydata/DESCRIPTION | 15 manydata-0.8.1/manydata/MD5 | 62 - manydata-0.8.1/manydata/NAMESPACE | 62 + manydata-0.8.1/manydata/NEWS.md | 33 manydata-0.8.1/manydata/R/consolidate.R | 174 +-- manydata-0.8.1/manydata/R/data_report.R | 80 + manydata-0.8.1/manydata/R/db_profile.R |only manydata-0.8.1/manydata/R/emperors.R | 4 manydata-0.8.1/manydata/R/manydata-defunct.R |only manydata-0.8.1/manydata/R/map_plot.R |only manydata-0.8.1/manydata/R/package_get.R | 105 +- manydata-0.8.1/manydata/R/releases_plot.R | 35 manydata-0.8.1/manydata/R/sysdata.rda |only manydata-0.8.1/manydata/R/treaties_retrieve.R |only manydata-0.8.1/manydata/README.md | 51 + manydata-0.8.1/manydata/build/vignette.rds |binary manydata-0.8.1/manydata/data/emperors.rda |binary manydata-0.8.1/manydata/inst/cheatsheet.pdf |binary manydata-0.8.1/manydata/inst/cheatsheet.png |binary manydata-0.8.1/manydata/inst/doc/user.html | 461 +++++----- manydata-0.8.1/manydata/man/consolidate.Rd | 6 manydata-0.8.1/manydata/man/db_profile.Rd |only manydata-0.8.1/manydata/man/defunct.Rd |only manydata-0.8.1/manydata/man/emperors.Rd | 47 + manydata-0.8.1/manydata/man/figures/README-unnamed-chunk-1-1.png |only manydata-0.8.1/manydata/man/figures/README-unnamed-chunk-2-1.png |only manydata-0.8.1/manydata/man/figures/cheatsheet.pdf |binary manydata-0.8.1/manydata/man/figures/cheatsheet.png |binary manydata-0.8.1/manydata/man/get_packages.Rd | 6 manydata-0.8.1/manydata/man/network_map.Rd |only manydata-0.8.1/manydata/man/report.Rd | 20 manydata-0.8.1/manydata/man/retrieve_treaty.Rd |only manydata-0.8.1/manydata/tests/testthat/test-network_map.R |only manydata-0.8.1/manydata/tests/testthat/test_consolidate.R | 53 - manydata-0.8.1/manydata/tests/testthat/test_db.R |only manydata-0.8.1/manydata/tests/testthat/test_releases.R | 2 manydata-0.8.1/manydata/tests/testthat/test_retrieve.R |only 41 files changed, 776 insertions(+), 440 deletions(-)
Title: Spatial Analysis on Network
Description: Perform spatial analysis on network.
Implement several methods for spatial analysis on network: Network Kernel Density estimation,
building of spatial matrices based on network distance ('listw' objects from 'spdep' package), K functions estimation
for point pattern analysis on network, k nearest neighbours on network, reachable area calculation, and graph generation
References: Okabe et al (2019) <doi:10.1080/13658810802475491>;
Okabe et al (2012, ISBN:978-0470770818);Baddeley et al (2015, ISBN:9781482210200).
Author: Jeremy Gelb [aut, cre] ,
Philippe Apparicio [ctb]
Maintainer: Jeremy Gelb <jeremy.gelb@ucs.inrs.ca>
Diff between spNetwork versions 0.4.3.2 dated 2022-05-14 and 0.4.3.6 dated 2022-11-11
DESCRIPTION | 6 MD5 | 63 +- NAMESPACE | 1 NEWS.md | 32 + R/RcppExports.R | 20 R/border_correction_sf.R | 2 R/geometrical_functions_sf.R | 10 R/isochrones_sf.R | 275 ++++++++++-- R/k_functions_sf.R | 31 + R/nkde_execution_functions_sf.R | 15 README.md | 6 build/partial.rdb |binary inst/doc/Isochrones.html | 240 ++++++++++- inst/doc/KNetworkFunctions.html | 329 +++++++++++++-- inst/doc/NKDE.html | 632 ++++++++++++++++++++++++----- inst/doc/NetworkBuilding.html | 274 +++++++++++- inst/doc/SpatialWeightMatrices.html | 276 +++++++++++- inst/doc/TNKDE.html | 292 ++++++++++++- inst/extdata/results_vignette_kfunc.rda |binary inst/extdata/results_vignette_nkde.rda |binary inst/extdata/results_vignette_tnkde.rda |binary man/calc_isochrones.Rd | 8 man/figures/unnamed-chunk-8-1.png |binary man/simple_lines.Rd | 8 man/trim_lines_at.Rd |only src/RcppExports.cpp | 71 +++ src/geometrical_functions.cpp | 215 ++++++++- src/k_and_g_func.cpp | 2 src/matrices_functions.cpp | 18 src/matrices_functions.h | 2 tests/testthat/test_border_correction_sf.R | 22 - tests/testthat/test_isochrone_sf.R | 67 +++ vignettes/images/animated_map.gif |binary 33 files changed, 2566 insertions(+), 351 deletions(-)
Title: Spatial Statistical Modeling and Prediction
Description: Fit, summarize, and predict for a variety of spatial statistical models
applied to point-referenced and areal (lattice) data. Parameters
are estimated using various methods. Additional modeling features include anisotropy,
random effects, partition factors, big data approaches, and more. Model-fit statistics are
used to summarize, visualize, and compare models. Predictions at unobserved locations are
readily obtainable.
Author: Michael Dumelle [aut, cre] ,
Matt Higham [aut],
Jay M. Ver Hoef [aut]
Maintainer: Michael Dumelle <Dumelle.Michael@epa.gov>
Diff between spmodel versions 0.1.1 dated 2022-10-20 and 0.2.0 dated 2022-11-11
DESCRIPTION | 13 MD5 | 86 + NAMESPACE | 10 NEWS.md | 38 R/AIC.R | 430 ++++----- R/covmatrix.R |only R/get_data_object.R | 832 +++++++++-------- R/glances.R | 38 R/partition_matrix.R | 51 - R/predict.R | 1533 ++++++++++++++++++--------------- R/print.R | 2 R/spautor.R | 503 +++++----- R/spautorRF.R |only R/spcov_initial.R | 392 ++++---- R/spcov_optim2orig.R | 34 R/spcov_orig2optim.R | 42 R/splm.R | 752 ++++++++-------- R/splmRF.R |only R/spmodel-package.R | 28 R/utils.R | 20 README.md | 8 inst/CITATION | 24 inst/doc/basics.Rmd | 549 +++++------ inst/doc/basics.pdf |binary inst/doc/guide.R | 126 +- inst/doc/guide.Rmd | 328 ++++--- inst/doc/guide.pdf |binary inst/doc/technical.Rmd | 1854 ++++++++++++++++++++-------------------- inst/doc/technical.pdf |binary inst/references.bib | 806 +++++++++-------- man/AIC.spmod.Rd | 11 man/covmatrix.Rd |only man/glances.Rd | 11 man/predict.spmod.Rd | 36 man/predict.spmodRF.Rd |only man/spautor.Rd | 33 man/spautorRF.Rd |only man/spcov_initial.Rd | 2 man/splm.Rd | 38 man/splmRF.Rd |only man/spmodel-package.Rd | 11 tests/testthat/test-covmatrix.R |only tests/testthat/test-glances.R | 36 tests/testthat/test-predict.R | 50 + tests/testthat/test-spautorRF.R |only tests/testthat/test-splmRF.R |only vignettes/basics.Rmd | 549 +++++------ vignettes/guide.Rmd | 328 ++++--- vignettes/technical.Rmd | 1854 ++++++++++++++++++++-------------------- 49 files changed, 6132 insertions(+), 5326 deletions(-)
Title: Sparse and Dense Matrix Classes and Methods
Description: A rich hierarchy of matrix classes, including triangular,
symmetric, and diagonal matrices, both dense and sparse and with
pattern, logical and numeric entries. Numerous methods for and
operations on these matrices, using 'LAPACK' and 'SuiteSparse' libraries.
Author: Douglas Bates [aut],
Martin Maechler [aut, cre] ,
Mikael Jagan [aut] ,
Timothy A. Davis [ctb] )),
Jens Oehlschlaegel [ctb] ),
Jason Riedy [ctb] and onenormest for octave, Copyright:
Regents of the University of California),
R Core Team [ctb]
Maintainer: Martin Maechler <mmaechler+Matrix@gmail.com>
Diff between Matrix versions 1.5-1 dated 2022-09-13 and 1.5-3 dated 2022-11-11
Matrix-1.5-1/Matrix/R/dMatrix.R |only Matrix-1.5-1/Matrix/R/ddenseMatrix.R |only Matrix-1.5-1/Matrix/R/dgCMatrix.R |only Matrix-1.5-1/Matrix/R/dgTMatrix.R |only Matrix-1.5-1/Matrix/R/dgeMatrix.R |only Matrix-1.5-1/Matrix/R/dsCMatrix.R |only Matrix-1.5-1/Matrix/R/dsTMatrix.R |only Matrix-1.5-1/Matrix/R/dspMatrix.R |only Matrix-1.5-1/Matrix/R/dsparseMatrix.R |only Matrix-1.5-1/Matrix/R/dsyMatrix.R |only Matrix-1.5-1/Matrix/R/dtCMatrix.R |only Matrix-1.5-1/Matrix/R/dtTMatrix.R |only Matrix-1.5-1/Matrix/R/dtpMatrix.R |only Matrix-1.5-1/Matrix/R/dtrMatrix.R |only Matrix-1.5-1/Matrix/R/lMatrix.R |only Matrix-1.5-1/Matrix/R/ldenseMatrix.R |only Matrix-1.5-1/Matrix/R/lgCMatrix.R |only Matrix-1.5-1/Matrix/R/lgTMatrix.R |only Matrix-1.5-1/Matrix/R/lsCMatrix.R |only Matrix-1.5-1/Matrix/R/lsTMatrix.R |only Matrix-1.5-1/Matrix/R/lsparseMatrix.R |only Matrix-1.5-1/Matrix/R/ltCMatrix.R |only Matrix-1.5-1/Matrix/R/ltTMatrix.R |only Matrix-1.5-1/Matrix/R/ndenseMatrix.R |only Matrix-1.5-1/Matrix/R/ngCMatrix.R |only Matrix-1.5-1/Matrix/R/ngTMatrix.R |only Matrix-1.5-1/Matrix/R/nsCMatrix.R |only Matrix-1.5-1/Matrix/R/nsTMatrix.R |only Matrix-1.5-1/Matrix/R/nsparseMatrix.R |only Matrix-1.5-1/Matrix/R/ntCMatrix.R |only Matrix-1.5-1/Matrix/R/ntTMatrix.R |only Matrix-1.5-1/Matrix/src/TMatrix_as.c |only Matrix-1.5-1/Matrix/src/TMatrix_as.h |only Matrix-1.5-1/Matrix/src/Tsparse.c |only Matrix-1.5-1/Matrix/src/Tsparse.h |only Matrix-1.5-1/Matrix/src/dgTMatrix.c |only Matrix-1.5-1/Matrix/src/dgTMatrix.h |only Matrix-1.5-1/Matrix/src/dtTMatrix.c |only Matrix-1.5-1/Matrix/src/dtTMatrix.h |only Matrix-1.5-1/Matrix/src/ldense.c |only Matrix-1.5-1/Matrix/src/ldense.h |only Matrix-1.5-1/Matrix/src/lgCMatrix.c |only Matrix-1.5-1/Matrix/src/lgCMatrix.h |only Matrix-1.5-1/Matrix/src/t_gCMatrix_colSums.c |only Matrix-1.5-1/Matrix/src/t_matrix_to_Csp.c |only Matrix-1.5-3/Matrix/DESCRIPTION | 12 Matrix-1.5-3/Matrix/MD5 | 256 - Matrix-1.5-3/Matrix/NAMESPACE | 25 Matrix-1.5-3/Matrix/R/AllClass.R | 1211 +++-- Matrix-1.5-3/Matrix/R/Auxiliaries.R | 186 Matrix-1.5-3/Matrix/R/BunchKaufman.R | 53 Matrix-1.5-3/Matrix/R/LU.R | 4 Matrix-1.5-3/Matrix/R/Math.R | 14 Matrix-1.5-3/Matrix/R/Matrix.R | 25 Matrix-1.5-3/Matrix/R/Ops.R | 20 Matrix-1.5-3/Matrix/R/chol.R | 8 Matrix-1.5-3/Matrix/R/colSums.R | 165 Matrix-1.5-3/Matrix/R/determinant.R | 40 Matrix-1.5-3/Matrix/R/diagMatrix.R | 1527 ++++--- Matrix-1.5-3/Matrix/R/dpoMatrix.R | 3 Matrix-1.5-3/Matrix/R/dppMatrix.R | 3 Matrix-1.5-3/Matrix/R/indMatrix.R | 252 - Matrix-1.5-3/Matrix/R/is.na.R | 113 Matrix-1.5-3/Matrix/R/kronecker.R | 764 +++ Matrix-1.5-3/Matrix/R/pMatrix.R | 170 Matrix-1.5-3/Matrix/R/rcond.R | 8 Matrix-1.5-3/Matrix/R/sparseMatrix.R | 211 - Matrix-1.5-3/Matrix/R/sparseVector.R | 16 Matrix-1.5-3/Matrix/R/which.R | 4 Matrix-1.5-3/Matrix/R/zzz.R | 40 Matrix-1.5-3/Matrix/build/partial.rdb |binary Matrix-1.5-3/Matrix/build/vignette.rds |binary Matrix-1.5-3/Matrix/inst/NEWS.Rd | 220 + Matrix-1.5-3/Matrix/inst/doc/Comparisons.pdf |binary Matrix-1.5-3/Matrix/inst/doc/Design-issues.pdf |binary Matrix-1.5-3/Matrix/inst/doc/Intro2Matrix.pdf |binary Matrix-1.5-3/Matrix/inst/doc/Introduction.pdf |binary Matrix-1.5-3/Matrix/inst/doc/sparseModels.pdf |binary Matrix-1.5-3/Matrix/inst/test-tools-Matrix.R | 58 Matrix-1.5-3/Matrix/man/CsparseMatrix-class.Rd | 1 Matrix-1.5-3/Matrix/man/Diagonal.Rd | 105 Matrix-1.5-3/Matrix/man/RsparseMatrix-class.Rd | 1 Matrix-1.5-3/Matrix/man/TsparseMatrix-class.Rd | 1 Matrix-1.5-3/Matrix/man/boolean-matprod.Rd | 63 Matrix-1.5-3/Matrix/man/colSums.Rd | 38 Matrix-1.5-3/Matrix/man/condest.Rd | 8 Matrix-1.5-3/Matrix/man/diagU2N.Rd | 19 Matrix-1.5-3/Matrix/man/diagonalMatrix-class.Rd | 1 Matrix-1.5-3/Matrix/man/dimScale.Rd |only Matrix-1.5-3/Matrix/man/is.na-methods.Rd | 116 Matrix-1.5-3/Matrix/man/kronecker-methods.Rd | 35 Matrix-1.5-3/Matrix/man/matrix-products.Rd | 43 Matrix-1.5-3/Matrix/man/spMatrix.Rd | 2 Matrix-1.5-3/Matrix/man/sparseLU-class.Rd | 11 Matrix-1.5-3/Matrix/man/sparseMatrix.Rd | 129 Matrix-1.5-3/Matrix/man/symmpart.Rd | 4 Matrix-1.5-3/Matrix/src/Csparse.c | 30 Matrix-1.5-3/Matrix/src/Csparse.h | 20 Matrix-1.5-3/Matrix/src/Lapack-etc.h | 7 Matrix-1.5-3/Matrix/src/Mdefines.h |only Matrix-1.5-3/Matrix/src/Minlines.h |only Matrix-1.5-3/Matrix/src/Mutils.c | 2130 +--------- Matrix-1.5-3/Matrix/src/Mutils.h | 659 --- Matrix-1.5-3/Matrix/src/Syms.h | 5 Matrix-1.5-3/Matrix/src/chm_common.c | 24 Matrix-1.5-3/Matrix/src/chm_common.h | 10 Matrix-1.5-3/Matrix/src/cs_utils.c | 10 Matrix-1.5-3/Matrix/src/dense.c | 1599 ++++++- Matrix-1.5-3/Matrix/src/dense.h | 13 Matrix-1.5-3/Matrix/src/dgCMatrix.c | 43 Matrix-1.5-3/Matrix/src/dgCMatrix.h | 51 Matrix-1.5-3/Matrix/src/dgeMatrix.c | 396 + Matrix-1.5-3/Matrix/src/dgeMatrix.h | 24 Matrix-1.5-3/Matrix/src/dpoMatrix.c | 206 Matrix-1.5-3/Matrix/src/dpoMatrix.h | 11 Matrix-1.5-3/Matrix/src/dppMatrix.c | 185 Matrix-1.5-3/Matrix/src/dppMatrix.h | 9 Matrix-1.5-3/Matrix/src/dsCMatrix.c | 8 Matrix-1.5-3/Matrix/src/dsCMatrix.h | 7 Matrix-1.5-3/Matrix/src/dspMatrix.c | 232 - Matrix-1.5-3/Matrix/src/dspMatrix.h | 12 Matrix-1.5-3/Matrix/src/dsyMatrix.c | 353 + Matrix-1.5-3/Matrix/src/dsyMatrix.h | 19 Matrix-1.5-3/Matrix/src/dtCMatrix.c | 14 Matrix-1.5-3/Matrix/src/dtCMatrix.h | 14 Matrix-1.5-3/Matrix/src/dtpMatrix.c | 152 Matrix-1.5-3/Matrix/src/dtpMatrix.h | 6 Matrix-1.5-3/Matrix/src/dtrMatrix.c | 287 - Matrix-1.5-3/Matrix/src/dtrMatrix.h | 8 Matrix-1.5-3/Matrix/src/factorizations.c | 471 ++ Matrix-1.5-3/Matrix/src/factorizations.h | 21 Matrix-1.5-3/Matrix/src/init.c | 266 - Matrix-1.5-3/Matrix/src/packedMatrix.c | 1142 +++-- Matrix-1.5-3/Matrix/src/packedMatrix.h | 3 Matrix-1.5-3/Matrix/src/scripts/DEPS.mkf | 214 - Matrix-1.5-3/Matrix/src/scripts/SOURCES_C.mkf | 10 Matrix-1.5-3/Matrix/src/sparse.c | 5043 +++++++++++++++--------- Matrix-1.5-3/Matrix/src/sparse.h | 53 Matrix-1.5-3/Matrix/src/sparseQR.c | 24 Matrix-1.5-3/Matrix/src/sparseQR.h | 1 Matrix-1.5-3/Matrix/src/sparseVector.c |only Matrix-1.5-3/Matrix/src/sparseVector.h |only Matrix-1.5-3/Matrix/src/t_Csparse_subassign.c | 2 Matrix-1.5-3/Matrix/src/t_sparseVector.c | 10 Matrix-1.5-3/Matrix/src/unpackedMatrix.c | 1596 +++++-- Matrix-1.5-3/Matrix/src/unpackedMatrix.h | 7 Matrix-1.5-3/Matrix/src/validity.c |only Matrix-1.5-3/Matrix/src/validity.h |only Matrix-1.5-3/Matrix/tests/Simple.R | 84 Matrix-1.5-3/Matrix/tests/factorizing.R | 32 Matrix-1.5-3/Matrix/tests/indexing.R | 4 Matrix-1.5-3/Matrix/tests/indexing.Rout.save | 265 - Matrix-1.5-3/Matrix/tests/matprod.R | 200 Matrix-1.5-3/Matrix/tests/symmDN.R | 35 Matrix-1.5-3/Matrix/tests/validObj.R | 13 155 files changed, 13294 insertions(+), 8731 deletions(-)
Title: Plot Stacked Areas and Confidence Bands as Filled Polygons
Description: Plot stacked areas and confidence bands as filled polygons, or add
polygons to existing plots. A variety of input formats are supported,
including vectors, matrices, data frames, formulas, etc.
Author: Arni Magnusson [aut, cre]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between areaplot versions 1.2.2 dated 2020-11-23 and 1.2.3 dated 2022-11-11
areaplot-1.2.2/areaplot/NEWS |only areaplot-1.2.3/areaplot/DESCRIPTION | 10 +++++----- areaplot-1.2.3/areaplot/MD5 | 6 +++--- areaplot-1.2.3/areaplot/NEWS.md |only areaplot-1.2.3/areaplot/R/areaplot.R | 6 +++--- 5 files changed, 11 insertions(+), 11 deletions(-)
Title: Spatio-Temporal Analysis of Point Patterns on Linear Networks
Description: Statistical analysis of spatio-temporal point processes on linear networks. This packages provides tools to visualise and analyse spatio-temporal point patterns on linear networks using first- and second-order summary statistics.
Author: Mehdi Moradi [aut, cre] ,
Ottmar Cronie [ctb],
Jorge Mateu [ctb]
Maintainer: Mehdi Moradi <m2.moradi@yahoo.com>
Diff between stlnpp versions 0.3.8 dated 2022-02-17 and 0.3.9 dated 2022-11-11
DESCRIPTION | 10 - MD5 | 86 ++++----- NAMESPACE | 90 ++++----- R/as.lpp.stlpp.R | 12 - R/as.stlpp.R | 86 ++++----- R/as.stlpp.tpp.R | 310 +++++++++++++++++----------------- R/density.stlpp.R | 136 +++++++-------- R/densityVoronoi.stlpp.R | 196 ++++++++++----------- R/densityVoronoi.tpp.R | 84 ++++----- R/methods.stlpp.R | 262 ++++++++++++++--------------- R/plot.stlpp.R | 388 +++++++++++++++++++++---------------------- R/print.stlpp.R | 58 +++--- R/rpoistlpp.R | 248 +++++++++++++-------------- R/rpoistpp.R | 181 ++++++++++---------- R/rthin.stlpp.R | 52 ++--- R/stlg.R | 130 +++++++------- R/stlginhom.R | 146 ++++++++-------- R/stlk.R | 126 ++++++------- R/stlkinhom.R | 134 +++++++------- R/unique.stlpp.R | 16 - README.md | 16 - inst/CITATION | 18 - man/Eastbourne.Rd | 68 +++---- man/Medellin.Rd | 62 +++--- man/as.stlpp.Rd | 96 +++++----- man/as.stlpp.lpp.Rd | 90 ++++----- man/as.tpp.stlpp.Rd | 66 +++---- man/density.stlpp.Rd | 94 +++++----- man/density.tpp.Rd | 76 ++++---- man/densityVoronoi.stlnpp.Rd | 124 ++++++------- man/densityVoronoi.tpp.Rd | 106 +++++------ man/easynet.Rd | 30 +-- man/methods.stlpp.Rd | 134 +++++++------- man/methods.tpp.Rd | 92 +++++----- man/rpoistlpp.Rd | 86 ++++----- man/rpoistpp.Rd | 94 +++++----- man/rthin.stlpp.Rd | 70 +++---- man/stlg.Rd | 76 ++++---- man/stlginhom.Rd | 86 ++++----- man/stlk.Rd | 80 ++++---- man/stlkinhom.Rd | 84 ++++----- man/stlpp.Rd | 86 ++++----- man/tpp.Rd | 74 ++++---- man/unique.stlpp.Rd | 80 ++++---- 44 files changed, 2320 insertions(+), 2319 deletions(-)
Title: Docker Client
Description: Work with containers over the Docker API. Rather than
using system calls to interact with a docker client, using the
API directly means that we can receive richer information from
docker. The interface in the package is automatically generated
using the 'OpenAPI' (a.k.a., 'swagger') specification, and all
return values are checked in order to make them type stable.
Author: Rich FitzJohn [aut, cre]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between stevedore versions 0.9.4 dated 2021-10-22 and 0.9.5 dated 2022-11-11
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- build/stevedore.pdf |binary build/vignette.rds |binary tests/testthat/test-util.R | 8 ++------ 5 files changed, 9 insertions(+), 13 deletions(-)
Title: Create and Query a Local Copy of 'GenBank' in R
Description: Download large sections of
'GenBank' <https://www.ncbi.nlm.nih.gov/genbank/> and generate a local
SQL-based database. A user can then query this database using 'restez'
functions or through 'rentrez' <https://CRAN.R-project.org/package=rentrez>
wrappers.
Author: Joel H. Nitta [aut, cre] ,
Dom Bennett [aut]
Maintainer: Joel H. Nitta <joelnitta@gmail.com>
Diff between restez versions 2.1.2 dated 2022-09-05 and 2.1.3 dated 2022-11-11
DESCRIPTION | 12 ++-- MD5 | 10 +-- NEWS.md | 7 ++ R/download-tools.R | 9 +++ README.md | 135 ++++++++++++++++++----------------------------------- man/restez.Rd | 2 6 files changed, 73 insertions(+), 102 deletions(-)
Title: Rare Variant Analysis and Genetic Simulations
Description: Genetic simulations and rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test (Bocher et al. 2021 <doi:10.1038/s41431-020-00792-8>). Ravages also implements a dedicated procedure to perform rare variant association tests in the whole genome (Bocher et al. 2022, <doi:10.1371/journal.pgen.1009923>).
Author: Ozvan Bocher and Herve Perdry
Maintainer: Ozvan Bocher <bocherozvan@gmail.com>
Diff between Ravages versions 1.1.0 dated 2022-06-01 and 1.1.1 dated 2022-11-11
Ravages-1.1.0/Ravages/NEWS |only Ravages-1.1.1/Ravages/DESCRIPTION | 10 +-- Ravages-1.1.1/Ravages/MD5 | 26 +++++----- Ravages-1.1.1/Ravages/NEWS.md |only Ravages-1.1.1/Ravages/build/vignette.rds |binary Ravages-1.1.1/Ravages/data/GnomADgenes.RData |binary Ravages-1.1.1/Ravages/data/Kryukov.rda |binary Ravages-1.1.1/Ravages/data/LCT.haplotypes.rda |binary Ravages-1.1.1/Ravages/data/LCT.matrix.rda |binary Ravages-1.1.1/Ravages/data/Subregions_LCT_example.RData |binary Ravages-1.1.1/Ravages/data/genes.b37.RData |binary Ravages-1.1.1/Ravages/data/genes.b38.RData |binary Ravages-1.1.1/Ravages/inst/doc/Ravages_Simulations_vignette.pdf |binary Ravages-1.1.1/Ravages/inst/doc/Ravages_vignette.pdf |binary Ravages-1.1.1/Ravages/src/rbm_haplos_thresholds_filling.cpp | 10 +-- 15 files changed, 23 insertions(+), 23 deletions(-)
Title: A Common API to Modeling and Analysis Functions
Description: A common interface is provided to allow users to specify a
model without having to remember the different argument names across
different functions or computational engines (e.g. 'R', 'Spark',
'Stan', 'H2O', etc).
Author: Max Kuhn [aut, cre],
Davis Vaughan [aut],
Emil Hvitfeldt [ctb],
RStudio [cph, fnd]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between parsnip versions 1.0.2 dated 2022-10-01 and 1.0.3 dated 2022-11-11
DESCRIPTION | 12 +-- MD5 | 48 ++++++++----- NAMESPACE | 6 + NEWS.md | 10 ++ R/decision_tree.R | 21 ++++++ R/fit.R | 9 -- R/misc.R | 101 +++++++++++++++++------------ R/parsnip-package.R | 2 R/rand_forest.R | 1 R/rand_forest_aorsf.R |only R/survival_reg_flexsurvspline.R |only R/tunable.R | 48 +++++++++++++ README.md |only build/parsnip.pdf |binary inst/models.tsv | 2 man/details_auto_ml_h2o.Rd | 2 man/details_rand_forest_aorsf.Rd |only man/details_survival_reg_flexsurv.Rd | 10 ++ man/details_survival_reg_flexsurvspline.Rd |only man/extension-check-helpers.Rd |only man/rmd/auto_ml_h2o.Rmd | 2 man/rmd/auto_ml_h2o.md | 2 man/rmd/rand_forest_aorsf.Rmd |only man/rmd/rand_forest_aorsf.md |only man/rmd/survival_reg_flexsurv.Rmd | 5 + man/rmd/survival_reg_flexsurv.md | 7 ++ man/rmd/survival_reg_flexsurvspline.Rmd |only man/rmd/survival_reg_flexsurvspline.md |only tests/testthat/test_proportional_hazards.R | 9 -- tests/testthat/test_survival_reg.R | 9 -- 30 files changed, 214 insertions(+), 92 deletions(-)
Title: Data Quality in Epidemiological Research
Description: Data quality assessments guided by a
'data quality framework introduced by Schmidt and colleagues, 2021'
<doi:10.1186/s12874-021-01252-7> target the
data quality dimensions integrity, completeness, consistency, and
accuracy. The scope of applicable functions rests on the
availability of extensive metadata which can be provided in
spreadsheet tables. Either standardized (e.g. as 'html5' reports) or
individually tailored reports can be generated. For an introduction
into the specification of corresponding metadata, please refer to the
'package website'
<https://dataquality.ship-med.uni-greifswald.de/Annotation_of_Metadata.html>.
Author: University Medicine Greifswald [cph],
Elisa Kasbohm [aut] ,
Joany Marino [aut] ,
Adrian Richter [aut] ,
Carsten Oliver Schmidt [aut] ,
Stephan Struckmann [aut, cre] ,
German Research Foundation [fnd],
European Union’s Horizon 2020 programme [fnd]
Maintainer: Stephan Struckmann <stephan.struckmann@uni-greifswald.de>
Diff between dataquieR versions 1.0.11 dated 2022-10-11 and 1.0.12 dated 2022-11-11
DESCRIPTION | 14 LICENSE | 4 MD5 | 524 NAMESPACE | 294 NEWS.md | 204 R/000_globs.R | 543 R/acc_distributions.R | 708 R/acc_end_digits.R | 340 R/acc_loess.R | 1380 R/acc_margins.R | 1190 R/acc_multivariate_outlier.R | 477 R/acc_shape_or_scale.R | 676 R/acc_univariate_outlier.R | 856 R/acc_varcomp.R | 696 R/as.data.frame.dataquieR_resultset.R | 66 R/as.list.dataquieR_resultset.R | 48 R/com_item_missingness.R | 998 R/com_segment_missingness.R | 810 R/com_unit_missingness.R | 294 R/con_contradictions.R | 1107 R/con_inadmissible_categorical.R | 414 R/con_limit_deviations.R | 1264 R/dataquieR-package.R | 22 R/dataquieR_resultset.R | 38 R/dataquieR_resultset_verify.R | 194 R/dq_report.R | 980 R/dq_report_by.R | 234 R/html_dependency_vert_dt.R | 24 R/int_datatype_matrix.R | 574 R/pipeline_recursive_result.R | 250 R/pipeline_vectorized.R | 902 R/prep_add_to_meta.R | 110 R/prep_check_meta_names.R | 308 R/prep_clean_labels.R | 196 R/prep_create_meta.R | 250 R/prep_datatype_from_data.R | 178 R/prep_map_labels.R | 130 R/prep_min_obs_level.R | 168 R/prep_pmap.R | 98 R/prep_prepare_dataframes.R | 738 R/prep_study2meta.R | 268 R/prep_valuelabels_from_data.R | 192 R/print.ReportSummaryTable.R | 478 R/print.dataquieR_result.R | 98 R/print.dataquieR_resultset.R | 292 R/pro_applicability_matrix.R | 588 R/rbind.R | 188 R/summary.dataquieR_resultset.R | 222 R/util_anytime_installed.R | 18 R/util_app_cd.R | 54 R/util_app_dc.R | 42 R/util_app_dl.R | 56 R/util_app_ed.R | 54 R/util_app_iac.R | 62 R/util_app_iav.R | 54 R/util_app_im.R | 74 R/util_app_loess.R | 80 R/util_app_mar.R | 72 R/util_app_mol.R | 52 R/util_app_ol.R | 52 R/util_app_sm.R | 54 R/util_app_sos.R | 58 R/util_app_vc.R | 68 R/util_as_numeric.R | 74 R/util_assign_levlabs.R | 150 R/util_backtickQuote.R | 30 R/util_check_data_type.R | 178 R/util_check_one_unique_value.R | 28 R/util_compare_meta_with_study.R | 82 R/util_contradiction_rules.R | 418 R/util_correct_variable_use.R | 898 R/util_count_NA.R | 22 R/util_count_code_classes.R | 116 R/util_count_codes.R | 120 R/util_detect_cores.R | 30 R/util_dichotomize.R | 90 R/util_dist_selection.R | 120 R/util_empty.R | 14 R/util_ensure_suggested.R | 40 R/util_error.R | 104 R/util_find_external_functions_in_stacktrace.R | 112 R/util_find_first_externally_called_functions_in_stacktrace.R | 38 R/util_fix_rstudio_bugs.R | 70 R/util_get_code_list.R | 160 R/util_get_dataquieR_result.R | 72 R/util_get_var_att_names_of_level.R | 46 R/util_heatmap_1th.R | 314 R/util_hubert.R | 30 R/util_interpret_limits.R | 418 R/util_is_integer.R | 52 R/util_looks_like_missing.R | 116 R/util_make_function.R | 100 R/util_map_all.R | 318 R/util_map_labels.R | 20 R/util_no_value_labels.R | 98 R/util_observations_in_subgroups.R | 52 R/util_only_NAs.R | 26 R/util_par_pmap.R | 138 R/util_parse_assignments.R | 52 R/util_prepare_dataframes.R | 6 R/util_replace_codes_by_na.R | 144 R/util_set_doublequotes.R | 26 R/util_set_singlequotes.R | 26 R/util_set_size.R | 32 R/util_sigmagap.R | 80 R/util_sixsigma.R | 36 R/util_tukey.R | 36 R/util_validate_known_meta.R | 238 R/util_warn_unordered.R | 76 R/util_warning.R | 102 README.md | 155 build/vignette.rds |binary inst/CITATION | 98 inst/WORDLIST | 313 inst/default_report.Rmd | 806 inst/default_subreport.Rmd | 46 inst/default_subreport_meta_miss.Rmd | 128 inst/default_subreport_mv.Rmd | 58 inst/default_subreport_plotlist_not_mv.Rmd | 50 inst/default_subreport_table.Rmd | 86 inst/doc/DQ-report-example.R | 360 inst/doc/DQ-report-example.Rmd | 580 inst/doc/DQ-report-example.html | 6128 - inst/extdata/Missing-Codes-2020.csv | 34 inst/extdata/Missing-Codes-SHIP.csv | 36 inst/extdata/SHIP-sample-meta-data.csv | 60 inst/extdata/contradiction_checks.csv | 24 inst/extdata/ship_contradiction_checks.csv | 14 inst/heatmap_table_test.R | 198 inst/vertical-dt-style/sort_heatmap_dt.js | 32 inst/vertical-dt-style/vertical-dt-style.css | 48 tests/testthat.R | 4 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Title: A New Age-Period-Cohort Model for Describing and Investigating
Inter-Cohort Differences and Life Course Dynamics
Description: It implemented Age-Period-Interaction Model (APC-I Model) proposed in the paper of Liying Luo and James S. Hodges in 2019. A new age-period-cohort model for describing and investigating inter-cohort differences and life course dynamics.
Author: Jiahui Xu [aut, cre],
Liying Luo [aut]
Maintainer: Jiahui Xu <jpx5053@psu.edu>
Diff between APCI versions 1.0.5 dated 2021-12-05 and 1.0.6 dated 2022-11-11
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/MainEffect.R | 9 +++++++++ R/temp6_model.R | 1 + R/visualization.R | 2 +- tests/1_tests.R | 18 ++++++++++++++++++ 6 files changed, 37 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-06-13 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-26 0.7.4.4
2022-08-10 0.7.4.3
2022-06-27 0.7.4.2
2022-04-06 0.7.4.1
2022-02-10 0.7.4
2021-09-13 0.7.1
2021-03-29 0.7.0.7
2021-01-07 0.7.0.3
2020-11-18 0.7.0.2
2020-11-11 0.7.0
2020-03-04 0.6.1
2019-01-20 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-27 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-07 0.4.3
2022-05-25 0.4.2
2022-03-31 0.4.1
2022-01-28 0.4.0
2021-07-27 0.3.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-18 0.2.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-20 0.10.1
2021-02-07 0.9.1
2020-07-05 0.9.0
2017-04-28 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-27 0.6.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-18 1.0.3
2022-05-27 0.8.5
2022-04-22 0.6.1
2022-01-07 0.5.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-16 0.8.2
2021-03-08 0.8.1