Title: Import, Plot and Analyze Bathymetric and Topographic Data
Description: Import xyz data from the NOAA (National Oceanic and Atmospheric Administration, <https://www.noaa.gov>), GEBCO (General Bathymetric Chart of the Oceans, <https://www.gebco.net>) and other sources, plot xyz data to prepare publication-ready figures, analyze xyz data to extract transects, get depth / altitude based on geographical coordinates, or calculate z-constrained least-cost paths.
Author: Eric Pante, Benoit Simon-Bouhet, and Jean-Olivier Irisson
Maintainer: Benoit Simon-Bouhet <besibo@gmail.com>
Diff between marmap versions 1.0.6 dated 2021-11-10 and 1.0.7 dated 2022-11-12
DESCRIPTION | 8 +++--- MD5 | 51 +++++++++++++++++++-------------------- NAMESPACE | 1 R/as.xyz.R | 6 ++-- R/get.box.R | 16 ++++++------ R/getNOAA.bathy.R | 18 ++++++++++++- R/path.profile.R | 10 +++---- R/space.pies.R | 4 +-- R/summary.bathy.R | 2 - build/partial.rdb |only build/vignette.rds |binary data/aleutians.rda |binary data/celt.rda |binary data/florida.rda |binary data/hawaii.rda |binary data/hawaii.sites.rda |binary data/irregular.rda |binary data/metallo.rda |binary data/nw.atlantic.coast.rda |binary data/nw.atlantic.rda |binary inst/doc/marmap-DataAnalysis.pdf |binary inst/doc/marmap-ImportExport.pdf |binary inst/doc/marmap.pdf |binary man/getNOAA.bathy.Rd | 6 ++-- man/marmap.Rd | 6 ++-- man/metallo.Rd | 22 ++++++++-------- man/subsetSQL.Rd | 4 +-- 27 files changed, 85 insertions(+), 69 deletions(-)
Title: US Maps Including Alaska and Hawaii
Description: Obtain United States map data frames of varying region types (e.g. county,
state). The map data frames include Alaska and Hawaii conveniently placed to the
bottom left, as they appear in most maps of the US. Convenience functions for plotting
choropleths and working with FIPS codes are also provided.
Author: Paolo Di Lorenzo [aut, cre]
Maintainer: Paolo Di Lorenzo <paolo@dilorenzo.pl>
Diff between usmap versions 0.6.0 dated 2022-02-27 and 0.6.1 dated 2022-11-12
DESCRIPTION | 10 - MD5 | 30 +-- NAMESPACE | 1 NEWS.md | 7 R/plot-map.R | 12 - R/usmap.R | 2 README.md | 10 - build/vignette.rds |binary inst/doc/advanced-mapping.R | 2 inst/doc/advanced-mapping.Rmd | 4 inst/doc/advanced-mapping.html | 394 ++++++++++++++++++++++++++++++++--------- inst/doc/introduction.html | 354 +++++++++++++++++++++++++++++------- inst/doc/mapping.html | 392 ++++++++++++++++++++++++++++++++-------- man/usmap.Rd | 2 tests/testthat/test-plot.R | 41 +--- vignettes/advanced-mapping.Rmd | 4 16 files changed, 976 insertions(+), 289 deletions(-)
Title: Yet Another TAxonomy Handler
Description: Provides functions to manage taxonomy when lineages are
described with strings and ranks separated with special patterns like
"|*__" or ";*__".
Author: Antoine Bichat [aut, cre]
Maintainer: Antoine Bichat <antoine.bichat@proton.me>
Diff between yatah versions 0.1.0 dated 2020-03-01 and 0.2.1 dated 2022-11-12
yatah-0.1.0/yatah/tests/testthat/test-spec-chr.R |only yatah-0.2.1/yatah/DESCRIPTION | 28 yatah-0.2.1/yatah/MD5 | 77 +- yatah-0.2.1/yatah/NAMESPACE | 4 yatah-0.2.1/yatah/NEWS.md | 47 - yatah-0.2.1/yatah/R/abundances.R | 7 yatah-0.2.1/yatah/R/errors.R | 2 yatah-0.2.1/yatah/R/extract.R | 14 yatah-0.2.1/yatah/R/is_tests.R | 27 yatah-0.2.1/yatah/R/parameters.R | 8 yatah-0.2.1/yatah/R/taxtree.R | 6 yatah-0.2.1/yatah/R/trim.R |only yatah-0.2.1/yatah/R/yatah-package.R |only yatah-0.2.1/yatah/R/zzz.R |only yatah-0.2.1/yatah/README.md | 81 -- yatah-0.2.1/yatah/build/partial.rdb |only yatah-0.2.1/yatah/build/vignette.rds |binary yatah-0.2.1/yatah/inst/WORDLIST | 18 yatah-0.2.1/yatah/inst/doc/gammaproteobacteria.R | 8 yatah-0.2.1/yatah/inst/doc/gammaproteobacteria.Rmd | 11 yatah-0.2.1/yatah/inst/doc/gammaproteobacteria.html | 314 ++++++---- yatah-0.2.1/yatah/man/abundances.Rd | 14 yatah-0.2.1/yatah/man/all_clades.Rd | 12 yatah-0.2.1/yatah/man/depth.Rd | 1 yatah-0.2.1/yatah/man/dot-allchr.Rd | 6 yatah-0.2.1/yatah/man/dot-ranks.Rd | 6 yatah-0.2.1/yatah/man/error_lineage.Rd | 1 yatah-0.2.1/yatah/man/figures/README-taxtree-1.png |binary yatah-0.2.1/yatah/man/is_lineage.Rd | 4 yatah-0.2.1/yatah/man/is_rank.Rd | 3 yatah-0.2.1/yatah/man/trim_common.Rd |only yatah-0.2.1/yatah/man/trim_rank.Rd |only yatah-0.2.1/yatah/man/trim_void.Rd |only yatah-0.2.1/yatah/man/yatah-package.Rd |only yatah-0.2.1/yatah/tests/testthat/previous_outputs/all_cladesT1 |binary yatah-0.2.1/yatah/tests/testthat/test-lineage.R | 7 yatah-0.2.1/yatah/tests/testthat/test-onLoad.R | 2 yatah-0.2.1/yatah/tests/testthat/test-previous_outputs.R | 1 yatah-0.2.1/yatah/tests/testthat/test-ranks.R | 2 yatah-0.2.1/yatah/tests/testthat/test-special_characters.R |only yatah-0.2.1/yatah/tests/testthat/test-taxtable.R | 17 yatah-0.2.1/yatah/tests/testthat/test-taxtree.R | 27 yatah-0.2.1/yatah/tests/testthat/test-trim.R |only yatah-0.2.1/yatah/vignettes/gammaproteobacteria.Rmd | 11 yatah-0.2.1/yatah/vignettes/references.bib | 12 45 files changed, 426 insertions(+), 352 deletions(-)
Title: A Grammar of Interactive Graphics
Description: Provides a bridge between the 'loon' and 'ggplot2' packages. Extends the grammar of ggplot to add clauses to create interactive 'loon' plots. Existing ggplot(s) can be turned into interactive 'loon' plots and 'loon' plots into static ggplot(s); the function 'loon.ggplot()' is the bridge from one plot structure to the other.
Author: Zehao Xu [aut, cre],
R. Wayne Oldford [aut]
Maintainer: Zehao Xu <z267xu@uwaterloo.ca>
Diff between loon.ggplot versions 1.3.2 dated 2022-10-03 and 1.3.3 dated 2022-11-12
DESCRIPTION | 10 - MD5 | 36 ++--- R/advanced_loon_layers.R | 2 R/basic_loon_layers.R | 18 +- R/get_functions.R | 1 R/l_serialaxesplot.R | 3 inst/doc/ggplot2loon.html | 136 ++++++++++----------- inst/doc/grammarOfInteractiveGraphics.html | 128 ++++++++++--------- inst/doc/linking.html | 128 ++++++++++--------- inst/doc/loon2ggplot.html | 128 ++++++++++--------- inst/doc/pipes.html | 128 ++++++++++--------- inst/doc/thereAndBackAgain.html | 128 ++++++++++--------- man/geom_imageGlyph-deprecated.Rd | 20 +-- man/geom_pointrangeGlyph-deprecated.Rd | 20 +-- man/geom_serialAxesGlyph-deprecated.Rd | 20 +-- man/geom_textGlyph-deprecated.Rd | 12 + man/loon.ggplot-package.Rd | 2 tests/testthat/test_ggplot2loon_geometricObjects.R | 11 - tests/testthat/test_ggplot2loon_serialAxesCoord.R | 2 19 files changed, 493 insertions(+), 440 deletions(-)
Title: Using R to Install Stuff on Windows OS (Such As: R, 'Rtools',
'RStudio', 'Git', and More!)
Description: R is great for installing software. Through the 'installr'
package you can automate the updating of R (on Windows, using updateR())
and install new software. Software installation is initiated through a
GUI (just run installr()), or through functions such as: install.Rtools(),
install.pandoc(), install.git(), and many more. The updateR() command
performs the following: finding the latest R version, downloading it,
running the installer, deleting the installation file, copy and updating
old packages to the new R installation.
Author: Tal Galili [aut, cre, cph] ,
Barry Rowlingson [ctb],
Boris Hejblum [ctb],
Dason [ctb],
Felix Schonbrodt [ctb],
G. Grothendieck [ctb],
GERGELY DAROCZI [ctb],
Heuristic Andrew [ctb],
James [ctb] ,
Thomas Leeper [ctb] ,
VitoshKa [ctb],
Yihui Xie [ctb] , [...truncated...]
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between installr versions 0.23.2 dated 2021-05-08 and 0.23.4 dated 2022-11-12
ChangeLog | 276 ++++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 14 +- MD5 | 44 +++---- NEWS | 22 +++ NEWS.md | 34 +++++ R/install.R | 28 ++-- R/installOpenJdk.R | 4 R/installRtools.R | 18 ++- R/kill_pid.R | 18 +-- R/updateR.R | 12 +- man/ask.user.for.a.row.Rd | 4 man/get_Rscript_PID.Rd | 2 man/get_pid.Rd | 2 man/get_tasklist.Rd | 2 man/install.LaTeX2RTF.Rd | 2 man/install.RStudio.Rd | 2 man/install.git.Rd | 6 - man/install.java.Rd | 14 +- man/install.notepadpp.Rd | 2 man/kill_all_Rscript_s.Rd | 4 man/kill_pid.Rd | 4 man/kill_process.Rd | 4 man/updateR.Rd | 10 - 23 files changed, 430 insertions(+), 98 deletions(-)
Title: Work with the Doges/Dogaresse Dataset
Description: Work with data on Venetian doges and dogaresse, and use it for social network analysis, as used in Merelo (2022) <arXiv:2209.07334>.
Author: Juan Julian Merelo-Guervos
Maintainer: Juan Julian Merelo-Guervos <jjmerelo@gmail.com>
Diff between dogesr versions 0.1.0 dated 2022-09-27 and 0.1.5 dated 2022-11-12
DESCRIPTION | 13 +++++++------ MD5 | 29 +++++++++++++++++++++-------- NAMESPACE | 4 ++++ NEWS.md | 34 +++++++++++++++++++++++++++++----- R/doges.years.R | 1 + R/families.R |only README.md | 25 ++++++++++++++++++++++++- build |only data/doges.rda |binary data/families.rda |only inst |only man/doges.Rd | 5 +++-- man/families.Rd |only tests/testthat/test-dogesdata.R | 4 ++-- vignettes |only 15 files changed, 91 insertions(+), 24 deletions(-)
Title: Estimation and Testing Classes Based on Package 'distr'
Description: Evaluation (S4-)classes based on package distr for evaluating procedures
(estimators/tests) at data/simulation in a unified way.
Author: Florian Camphausen [ctb] ,
Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, cph],
Thomas Stabla [ctb]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrTEst versions 2.8.0 dated 2019-03-11 and 2.8.1 dated 2022-11-12
DESCRIPTION | 30 +++++++++++++++--------------- MD5 | 10 +++++----- inst/NEWS | 4 ++++ man/0distrTEst-package.Rd | 32 ++++++++------------------------ man/Evaluation-class.Rd | 4 ++++ man/EvaluationList-class.Rd | 3 +++ 6 files changed, 39 insertions(+), 44 deletions(-)
Title: Extensions of Package 'distr' for Teaching
Stochastics/Statistics in Secondary School
Description: Provides flexible examples of LLN and CLT for teaching purposes in secondary
school.
Author: Eleonora Feist [ctb] ,
Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, cph],
Anja Hueller [ctb]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrTeach versions 2.8.1 dated 2022-04-22 and 2.9.0 dated 2022-11-12
DESCRIPTION | 26 +++++++++++++------------- MD5 | 10 +++++----- R/illustCLT.R | 24 ++++++++++++++++++++++++ inst/NEWS | 15 +++++++++++---- man/0distrTeach-package.Rd | 32 +++++++++----------------------- man/plotCLT.Rd | 2 ++ 6 files changed, 64 insertions(+), 45 deletions(-)
Title: Simulation Classes Based on Package 'distr'
Description: S4-classes for setting up a coherent framework for simulation within the distr
family of packages.
Author: Florian Camphausen [ctb] ,
Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, cph],
Thomas Stabla [ctb]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrSim versions 2.8.0 dated 2019-03-11 and 2.8.1 dated 2022-11-12
DESCRIPTION | 28 ++++++++++++++-------------- MD5 | 12 ++++++------ inst/NEWS | 3 +++ man/0distrSim-package.Rd | 35 ++++++++--------------------------- man/Contsimulation-class.Rd | 2 ++ man/Dataclass-class.Rd | 3 +++ man/Simulation-class.Rd | 1 + 7 files changed, 37 insertions(+), 47 deletions(-)
Title: Distribution Classes for Distributions from Rmetrics
Description: S4-distribution classes based on package distr for distributions from packages
'fBasics' and 'fGarch'.
Author: Peter Ruckdeschel [cre, cph, aut]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrRmetrics versions 2.8.0 dated 2019-03-11 and 2.8.1 dated 2022-11-12
DESCRIPTION | 16 ++++++++-------- MD5 | 6 +++--- inst/NEWS | 3 +++ man/0distrRmetrics-package.Rd | 32 +++++++------------------------- 4 files changed, 21 insertions(+), 36 deletions(-)
Title: S4 Classes for Elliptically Contoured Distributions
Description: Distribution (S4-)classes for elliptically contoured distributions (based on
package 'distr').
Author: Peter Ruckdeschel [aut, cre, cph]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrEllipse versions 2.8.0 dated 2019-04-04 and 2.8.1 dated 2022-11-12
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- inst/NEWS | 1 + man/0distrEllipse-package.Rd | 10 +++++----- 4 files changed, 14 insertions(+), 13 deletions(-)
Title: Documentation for 'distr' Family of R Packages
Description: Provides documentation in form of a common vignette to packages 'distr',
'distrEx', 'distrMod', 'distrSim', 'distrTEst', 'distrTeach', and 'distrEllipse'.
Author: Florian Camphausen [ctb] ,
Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, cph],
Thomas Stabla [ctb]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrDoc versions 2.8.0 dated 2019-03-11 and 2.8.1 dated 2022-11-12
DESCRIPTION | 30 +++++------ MD5 | 18 +++--- build/vignette.rds |binary inst/CITATION | 4 - inst/NEWS | 4 + inst/doc/distr.R | 128 +++++++++++++++++++++++------------------------ inst/doc/distr.Rnw | 8 +- inst/doc/distr.pdf |binary man/0distrDoc-package.Rd | 31 +++-------- vignettes/distr.Rnw | 8 +- 10 files changed, 111 insertions(+), 120 deletions(-)
Title: Flexible Univariate Count Models Based on Renewal Processes
Description: Flexible univariate count models based on renewal processes. The
models may include covariates and can be specified with familiar formula
syntax as in glm() and package 'flexsurv'. The methodology is described by
Kharrat et all (2019) <doi:10.18637/jss.v090.i13> (included as vignette
'Countr_guide' in the package).
Author: Tarak Kharrat [aut],
Georgi N. Boshnakov [aut, cre]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between Countr versions 3.5.5 dated 2021-03-03 and 3.5.6 dated 2022-11-12
DESCRIPTION | 25 ++++----- MD5 | 72 +++++++++++++-------------- NEWS.md | 15 +++++ R/dWeibull.R | 2 R/dWeibullgamma.R | 2 R/data.R | 2 R/renewal_cstr.R | 2 R/renewal_methods.R | 1 R/renewal_tools.R | 6 +- README.md | 3 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/ComputationalPerformance.pdf |binary inst/doc/Countr_guide.pdf |binary inst/doc/ModelSelectionAndComparison.pdf |binary inst/doc/VarianceCovariance.pdf |binary inst/doc/exampleFertility.pdf |binary inst/doc/exampleFootball.pdf |binary man/dCount_allProbs_bi.Rd | 23 +++++++- man/dCount_conv_bi.Rd | 27 ++++++++-- man/dCount_conv_loglik_bi.Rd | 30 ++++++++--- man/dCount_dePril_bi.Rd | 25 ++++++++- man/dCount_naive_bi.Rd | 25 ++++++++- man/dWeibullCount.Rd | 52 ++++++++++++++----- man/dWeibullCount_mat.Rd | 16 ++++-- man/dWeibullgammaCount.Rd | 81 ++++++++++++++++++++++--------- man/dWeibullgammaCount_mat.Rd | 11 +++- man/dWeibullgammaCount_mat_Covariates.Rd | 13 ++++ man/dmodifiedCount_bi.Rd | 30 +++++++++-- man/evCount_conv_bi.Rd | 25 +++++++-- man/fertility.Rd | 6 +- man/football.Rd | 8 +-- man/predict.renewal.Rd | 13 +++- man/renewal.control.Rd | 10 +++ man/renewalCount.Rd | 30 +++++++++-- man/renewal_methods.Rd | 25 ++++++--- man/se.coef.Rd | 3 - 37 files changed, 418 insertions(+), 165 deletions(-)
Title: Local Projections Impulse Response Functions
Description: Provides functions to estimate and visualize linear as well as nonlinear impulse
responses based on local projections by Jordà (2005) <doi:10.1257/0002828053828518>.
The methods and the package are explained in detail in Adämmer (2019) <doi:10.32614/RJ-2019-052>.
Author: Philipp Adaemmer [aut, cre] ,
James P. LeSage [ctb],
Mehmet Balcilar [ctb],
Jon Danielsson [ctb]
Maintainer: Philipp Adaemmer <adaemmer@hsu-hh.de>
Diff between lpirfs versions 0.2.1 dated 2022-05-30 and 0.2.2 dated 2022-11-12
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- NEWS.md | 27 +++++++++++++++++---------- R/lp_lin.R | 17 +++++++++++++---- R/lp_lin_iv.R | 11 +++++++++-- R/lp_nl.R | 13 ++++++++++--- R/lp_nl_iv.R | 12 ++++++++++-- README.md | 20 ++++++++++++-------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/lpirfs_vignette.html | 6 +++--- man/lp_lin.Rd | 8 +++++--- man/lp_lin_iv.Rd | 5 +++-- man/lp_nl.Rd | 5 +++-- man/lp_nl_iv.Rd | 5 +++-- 15 files changed, 105 insertions(+), 58 deletions(-)
Title: Query 'SWI'-'Prolog' from R
Description: This R package connects to 'SWI'-'Prolog', <https://www.swi-prolog.org/>, so that R can send deterministic and non-deterministic queries to 'prolog' ('consult', 'query'/'submit', 'once', 'findall').
Author: Matthias Gondan
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rolog versions 0.9.4 dated 2022-05-14 and 0.9.6 dated 2022-11-12
rolog-0.9.4/rolog/inst/pl/mathjax.pl |only rolog-0.9.4/rolog/src/swipl-devel |only rolog-0.9.4/rolog/vignettes/bibliography.bibtex |only rolog-0.9.6/rolog/DESCRIPTION | 24 rolog-0.9.6/rolog/MD5 | 1477 ----------------- rolog-0.9.6/rolog/NAMESPACE | 2 rolog-0.9.6/rolog/NEWS.md | 10 rolog-0.9.6/rolog/R/as.rolog.R | 64 rolog-0.9.6/rolog/R/consult.R | 12 rolog-0.9.6/rolog/R/findall.R | 24 rolog-0.9.6/rolog/R/once.R | 24 rolog-0.9.6/rolog/R/portray.R | 14 rolog-0.9.6/rolog/R/query.R | 45 rolog-0.9.6/rolog/R/rolog.R | 378 +++- rolog-0.9.6/rolog/README.md | 123 + rolog-0.9.6/rolog/build/vignette.rds |binary rolog-0.9.6/rolog/inst/doc/rolog.R | 143 + rolog-0.9.6/rolog/inst/doc/rolog.Rmd | 2029 ++++++++++++------------ rolog-0.9.6/rolog/inst/doc/rolog.html | 1641 +++++++++++++------ rolog-0.9.6/rolog/inst/pl/as.rolog.Rd |only rolog-0.9.6/rolog/inst/pl/backdoor.pl | 348 ++-- rolog-0.9.6/rolog/inst/pl/clear.Rd |only rolog-0.9.6/rolog/inst/pl/consult.Rd |only rolog-0.9.6/rolog/inst/pl/family.pl | 25 rolog-0.9.6/rolog/inst/pl/findall.Rd |only rolog-0.9.6/rolog/inst/pl/interval.pl | 1023 ++++++------ rolog-0.9.6/rolog/inst/pl/once.Rd |only rolog-0.9.6/rolog/inst/pl/portray.Rd |only rolog-0.9.6/rolog/inst/pl/query.Rd |only rolog-0.9.6/rolog/inst/pl/r_eval.pl | 10 rolog-0.9.6/rolog/inst/pl/rolog_done.Rd |only rolog-0.9.6/rolog/inst/pl/rolog_init.Rd |only rolog-0.9.6/rolog/inst/pl/rolog_options.Rd |only rolog-0.9.6/rolog/inst/pl/submit.Rd |only rolog-0.9.6/rolog/inst/pl/telescope.pl | 53 rolog-0.9.6/rolog/man/as.rolog.Rd | 58 rolog-0.9.6/rolog/man/clear.Rd | 68 rolog-0.9.6/rolog/man/consult.Rd | 52 rolog-0.9.6/rolog/man/findall.Rd | 118 - rolog-0.9.6/rolog/man/once.Rd | 154 - rolog-0.9.6/rolog/man/portray.Rd | 104 - rolog-0.9.6/rolog/man/query.Rd | 142 - rolog-0.9.6/rolog/man/rolog_done.Rd | 28 rolog-0.9.6/rolog/man/rolog_init.Rd | 42 rolog-0.9.6/rolog/man/rolog_options.Rd | 52 rolog-0.9.6/rolog/man/submit.Rd | 88 - rolog-0.9.6/rolog/src/Makevars | 61 rolog-0.9.6/rolog/src/Makevars.ucrt | 96 - rolog-0.9.6/rolog/src/Makevars.win |only rolog-0.9.6/rolog/src/rolog.cpp | 43 rolog-0.9.6/rolog/tests/testthat.R | 8 rolog-0.9.6/rolog/tests/testthat/test-rolog.R | 44 rolog-0.9.6/rolog/vignettes/bibliography.bib |only rolog-0.9.6/rolog/vignettes/rolog.Rmd | 2029 ++++++++++++------------ 54 files changed, 5257 insertions(+), 5399 deletions(-)
Title: Object Oriented Implementation of Distributions
Description: S4-classes and methods for distributions.
Author: Florian Camphausen [ctb] ,
Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, cph],
Thomas Stabla [ctb] ,
R Core Team [ctb, cph]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distr versions 2.8.0 dated 2019-03-11 and 2.9.0 dated 2022-11-12
distr-2.8.0/distr/tests/Examples/distr-Ex_i386.Rout.save |only distr-2.8.0/distr/tests/Examples/distr-Ex_x64.Rout.save |only distr-2.9.0/distr/DESCRIPTION | 34 ++--- distr-2.9.0/distr/MD5 | 37 +++--- distr-2.9.0/distr/R/AllInitialize.R | 2 distr-2.9.0/distr/R/BinomialDistribution.R | 11 + distr-2.9.0/distr/R/CompoundDistribution.R | 21 ++- distr-2.9.0/distr/R/bAcDcLcDistribution.R | 86 ++++++++++----- distr-2.9.0/distr/R/internalUtils_LCD.R | 17 ++ distr-2.9.0/distr/build/vignette.rds |binary distr-2.9.0/distr/inst/CITATION | 2 distr-2.9.0/distr/inst/NEWS | 37 ++++++ distr-2.9.0/distr/inst/doc/newDistributions-knitr.R | 4 distr-2.9.0/distr/inst/doc/newDistributions-knitr.Rnw | 6 - distr-2.9.0/distr/inst/doc/newDistributions-knitr.pdf |binary distr-2.9.0/distr/man/0distr-package.Rd | 77 +------------ distr-2.9.0/distr/man/Truncate-methods.Rd | 2 distr-2.9.0/distr/man/internals.Rd | 9 - distr-2.9.0/distr/man/qqbounds.Rd | 4 distr-2.9.0/distr/tests/Examples/distr-Ex.Rout.save |only distr-2.9.0/distr/vignettes/newDistributions-knitr.Rnw | 6 - 21 files changed, 201 insertions(+), 154 deletions(-)
Title: Count Words, Chars and Non-Whitespace Chars in R Markdown Docs
Description: If you are using R Markdown documents then you have sometimes restrictions about the size of the documents, e.g. number of words, number of characters or non-whitespace characters. rmdcount() computes these counts with and without code chunks and returns the result as data frame.
Author: Sigbert Klinke [aut, cre]
Maintainer: Sigbert Klinke <sigbert@hu-berlin.de>
Diff between rmdwc versions 0.2.1 dated 2021-09-07 and 0.3.0 dated 2022-11-12
DESCRIPTION | 13 +++++++------ MD5 | 9 ++++++--- NAMESPACE | 4 ++++ R/addins.R |only README.md | 14 +++++++++++--- inst/rstudio |only man/rmdcountAddin.Rd |only 7 files changed, 28 insertions(+), 12 deletions(-)
Title: Creating Chronological Charts
Description: Easy way to draw chronological charts from tables, aiming to include an intuitive environment for anyone new to R. Includes 'ggplot2' geoms and theme for chronological charts.
Author: Thomas Rose [aut, cre] ,
Chiara Girotto [aut]
Maintainer: Thomas Rose <thomas.rose@daad-alumni.de>
Diff between chronochrt versions 0.1.1 dated 2022-06-07 and 0.1.2 dated 2022-11-12
chronochrt-0.1.1/chronochrt/tests/testthat/setup-tests.R |only chronochrt-0.1.2/chronochrt/DESCRIPTION | 17 +- chronochrt-0.1.2/chronochrt/MD5 | 34 ++-- chronochrt-0.1.2/chronochrt/NEWS.md | 9 - chronochrt-0.1.2/chronochrt/R/chronochrt_geom.R | 97 ++++++-------- chronochrt-0.1.2/chronochrt/R/chronochrt_plot.R | 29 ++-- chronochrt-0.1.2/chronochrt/R/chronochrt_wrapper_import.R | 44 +++--- chronochrt-0.1.2/chronochrt/README.md | 2 chronochrt-0.1.2/chronochrt/build/vignette.rds |binary chronochrt-0.1.2/chronochrt/inst/doc/ChronochRt.html | 13 + chronochrt-0.1.2/chronochrt/inst/doc/Examples.html | 13 + chronochrt-0.1.2/chronochrt/man/geom_chronochRt.Rd | 8 - chronochrt-0.1.2/chronochrt/man/geom_chronochRtImage.Rd | 8 - chronochrt-0.1.2/chronochrt/man/import_chron.Rd | 56 +++++--- chronochrt-0.1.2/chronochrt/man/plot_chronochrt.Rd | 30 ++-- chronochrt-0.1.2/chronochrt/tests/testthat.R | 20 +- chronochrt-0.1.2/chronochrt/tests/testthat/_snaps |only chronochrt-0.1.2/chronochrt/tests/testthat/setup.R |only chronochrt-0.1.2/chronochrt/tests/testthat/test_import.R | 4 19 files changed, 212 insertions(+), 172 deletions(-)
Title: The Gaussian Covariate Method for Variable Selection
Description: Given the standard linear model the traditional way of deciding whether to include the jth covariate is to apply the F-test to decide whether the corresponding beta coefficient is zero. The Gaussian covariate method is completely different. The question as to whether the beta coefficient is or is not zero is replaced by the question as to whether the covariate is better or worse than i.i.d. Gaussian noise. The P-value for the covariate is the probability that Gaussian noise is better. Surprisingly this can be given exactly and it is the same a the P-value for the classical model based on the F-distribution. The Gaussian covariate P-value is model free, it is the same for any data set. Using the idea it is possible to do covariate selection for a small number of covariates 25 by considering all subsets. Post selection inference causes no problems as the P-values hold whatever the data. The idea extends to stepwise regression again with exact probabilities. In the simplest version the [...truncated...]
Author: Laurie Davies [aut, cre]
Maintainer: Laurie Davies <laurie.davies@uni-due.de>
Diff between gausscov versions 0.1.8 dated 2022-06-26 and 0.1.9 dated 2022-11-12
gausscov-0.1.8/gausscov/R/decomp.R |only gausscov-0.1.8/gausscov/R/fcluster.R |only gausscov-0.1.8/gausscov/R/fgrall.R |only gausscov-0.1.8/gausscov/R/fnfp.R |only gausscov-0.1.8/gausscov/data/nufp.rda |only gausscov-0.1.8/gausscov/man/decomp.Rd |only gausscov-0.1.8/gausscov/man/fcluster.Rd |only gausscov-0.1.8/gausscov/man/fgrall.Rd |only gausscov-0.1.8/gausscov/man/fnfp.Rd |only gausscov-0.1.8/gausscov/man/nufp.Rd |only gausscov-0.1.9/gausscov/DESCRIPTION | 8 gausscov-0.1.9/gausscov/MD5 | 74 +++--- gausscov-0.1.9/gausscov/R/f1st.R | 51 +--- gausscov-0.1.9/gausscov/R/f2st.R | 5 gausscov-0.1.9/gausscov/R/f3st.R | 109 ++------- gausscov-0.1.9/gausscov/R/f3sti.R | 105 +++------ gausscov-0.1.9/gausscov/R/fgeninter.R | 47 +--- gausscov-0.1.9/gausscov/R/fgr1st.R | 53 ++-- gausscov-0.1.9/gausscov/R/fgr2st.R | 6 gausscov-0.1.9/gausscov/R/flag.R | 13 - gausscov-0.1.9/gausscov/R/fpval.R | 13 - gausscov-0.1.9/gausscov/R/fr1st.R | 6 gausscov-0.1.9/gausscov/R/fvauto.R | 56 +++-- gausscov-0.1.9/gausscov/R/simgpval.R |only gausscov-0.1.9/gausscov/data/abcq.rda |binary gausscov-0.1.9/gausscov/data/boston.rda |binary gausscov-0.1.9/gausscov/data/leukemia.rda |binary gausscov-0.1.9/gausscov/data/mel_temp.rda |binary gausscov-0.1.9/gausscov/data/redwine.rda |binary gausscov-0.1.9/gausscov/data/snspt.rda |binary gausscov-0.1.9/gausscov/man/f1st.Rd | 4 gausscov-0.1.9/gausscov/man/f2st.Rd | 6 gausscov-0.1.9/gausscov/man/f3st.Rd | 6 gausscov-0.1.9/gausscov/man/f3sti.Rd | 6 gausscov-0.1.9/gausscov/man/fgeninter.Rd | 11 - gausscov-0.1.9/gausscov/man/fgr1st.Rd | 7 gausscov-0.1.9/gausscov/man/fgr2st.Rd | 5 gausscov-0.1.9/gausscov/man/flag.Rd | 9 gausscov-0.1.9/gausscov/man/fpval.Rd | 3 gausscov-0.1.9/gausscov/man/fr1st.Rd | 4 gausscov-0.1.9/gausscov/man/fvauto.Rd | 18 + gausscov-0.1.9/gausscov/man/simgpval.Rd |only gausscov-0.1.9/gausscov/man/snspt.Rd | 4 gausscov-0.1.9/gausscov/src/gaucov.f | 328 +++--------------------------- 44 files changed, 298 insertions(+), 659 deletions(-)
Title: Plotting Generalised Additive Model for Location, Scale and
Shape
Description: Plotting functions for Generalised Additive Models for
Location Scale and Shape.
Author: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.ukg>, Bob Rigby, Fernanda De Bastiani, Julian Merder
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss.ggplots versions 1.0-0 dated 2022-02-11 and 2.0-1 dated 2022-11-12
gamlss.ggplots-1.0-0/gamlss.ggplots/R/fitted_plot.R |only gamlss.ggplots-1.0-0/gamlss.ggplots/R/fitted_resp.R |only gamlss.ggplots-1.0-0/gamlss.ggplots/R/pe_param.R |only gamlss.ggplots-1.0-0/gamlss.ggplots/R/resid_plot.R |only gamlss.ggplots-2.0-1/gamlss.ggplots/DESCRIPTION | 10 gamlss.ggplots-2.0-1/gamlss.ggplots/MD5 | 77 +++-- gamlss.ggplots-2.0-1/gamlss.ggplots/NAMESPACE | 54 ++-- gamlss.ggplots-2.0-1/gamlss.ggplots/R/Bucket_plot.R | 2 gamlss.ggplots-2.0-1/gamlss.ggplots/R/boot_coef.R | 17 - gamlss.ggplots-2.0-1/gamlss.ggplots/R/concurvity_new.R |only gamlss.ggplots-2.0-1/gamlss.ggplots/R/df_cor.R |only gamlss.ggplots-2.0-1/gamlss.ggplots/R/family_cdf.R | 98 ++++--- gamlss.ggplots-2.0-1/gamlss.ggplots/R/family_pdf.R | 2 gamlss.ggplots-2.0-1/gamlss.ggplots/R/fitPB.R |only gamlss.ggplots-2.0-1/gamlss.ggplots/R/fitted_cdf.R | 129 ++++------ gamlss.ggplots-2.0-1/gamlss.ggplots/R/fitted_centiles_2.R |only gamlss.ggplots-2.0-1/gamlss.ggplots/R/fitted_leverage.R | 3 gamlss.ggplots-2.0-1/gamlss.ggplots/R/fitted_pdf.R | 33 +- gamlss.ggplots-2.0-1/gamlss.ggplots/R/model_GAIC_lollipop.R | 13 - gamlss.ggplots-2.0-1/gamlss.ggplots/R/model_centiles_2.R |only gamlss.ggplots-2.0-1/gamlss.ggplots/R/nl_cor.R |only gamlss.ggplots-2.0-1/gamlss.ggplots/R/pcr_coef_path.R | 113 ++++++++ gamlss.ggplots-2.0-1/gamlss.ggplots/R/pe_moment.R | 10 gamlss.ggplots-2.0-1/gamlss.ggplots/R/pe_param_with_data_1.R |only gamlss.ggplots-2.0-1/gamlss.ggplots/R/pe_pdf.R | 73 +++-- gamlss.ggplots-2.0-1/gamlss.ggplots/R/pe_pdf_grid.R | 2 gamlss.ggplots-2.0-1/gamlss.ggplots/R/pe_quantile.R | 4 gamlss.ggplots-2.0-1/gamlss.ggplots/R/predict_cdf.R | 64 ++-- gamlss.ggplots-2.0-1/gamlss.ggplots/R/predict_pdf.R | 20 - gamlss.ggplots-2.0-1/gamlss.ggplots/R/resid_fv.R | 4 gamlss.ggplots-2.0-1/gamlss.ggplots/R/resid_median.R |only gamlss.ggplots-2.0-1/gamlss.ggplots/R/resid_param.R |only gamlss.ggplots-2.0-1/gamlss.ggplots/R/resid_plots.R | 2 gamlss.ggplots-2.0-1/gamlss.ggplots/R/resp_mu.R |only gamlss.ggplots-2.0-1/gamlss.ggplots/R/resp_param.R |only gamlss.ggplots-2.0-1/gamlss.ggplots/R/y_hist.R | 65 ++++- gamlss.ggplots-2.0-1/gamlss.ggplots/build/partial.rdb |binary gamlss.ggplots-2.0-1/gamlss.ggplots/man/PCR_coef_path.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/boot_coef.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/family_pdf.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/fitted_cdf.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/fitted_centiles.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/fitted_devianceIncr.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/fitted_leverage.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/fitted_resp.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/fitted_terms.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/histSmo_plot.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/model_pca.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/pe_param.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/resid_density.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/resid_dtop.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/resid_plot.Rd | 45 +++ gamlss.ggplots-2.0-1/gamlss.ggplots/man/resid_qqplot.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/resid_symmetry.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/resid_wp.Rd |only gamlss.ggplots-2.0-1/gamlss.ggplots/man/y_hist.Rd |only 56 files changed, 552 insertions(+), 288 deletions(-)
More information about gamlss.ggplots at CRAN
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Title: Easily Install and Load 'tesselle' Packages
Description: Easy install and load key packages from the 'tesselle' suite
in a single step. The 'tesselle' suite is a collection of packages for
research and teaching in archaeology. These packages focus on
quantitative analysis methods developed for archaeology. The
'tesselle' packages are designed to work seamlessly together and to
complement general-purpose and other specialized statistical packages.
These packages can be used to explore and analyze common data types in
archaeology: count data, compositional data and chronological data.
Learn more about 'tesselle' at <https://www.tesselle.org>.
Author: Nicolas Frerebeau [aut, cre] ,
Brice Lebrun [ctb]
Maintainer: Nicolas Frerebeau <nicolas.frerebeau@u-bordeaux-montaigne.fr>
Diff between tesselle versions 1.1.0 dated 2022-08-21 and 1.2.0 dated 2022-11-12
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 7 +++++++ R/tesselle-package.R | 2 +- README.md | 7 ++++--- man/tesselle-package.Rd | 2 +- 6 files changed, 23 insertions(+), 15 deletions(-)
Title: Ecological Restoration Planning
Description: Flexible framework for ecological restoration planning. It aims to identify priority areas for restoration efforts using optimization algorithms (based on Justeau-Allaire et al. 2021 <doi:10.1111/1365-2664.13803>). Priority areas can be identified by maximizing landscape indices, such as the effective mesh size (Jaeger 2000 <doi:10.1023/A:1008129329289>), or the integral index of connectivity (Pascual-Hortal & Saura 2006 <doi:10.1007/s10980-006-0013-z>). Additionally, constraints can be used to ensure that priority areas exhibit particular characteristics (e.g., ensure that particular places are not selected for restoration, ensure that priority areas form a single contiguous network). Furthermore, multiple near-optimal solutions can be generated to explore multiple options in restoration planning. The package leverages the 'Choco-solver' software to perform optimization using constraint programming (CP) techniques (<https://choco-solver.org/>).
Author: Dimitri Justeau-Allaire [aut, cre]
,
Jeffrey O Hanson [aut] ,
Ghislain Vieilledent [aut] ,
Philippe Vismara [aut],
Xavier Lorca [aut],
Philippe Birnbaum [aut]
Maintainer: Dimitri Justeau-Allaire <dimitri.justeau@gmail.com>
Diff between restoptr versions 1.0.2 dated 2022-10-13 and 1.0.3 dated 2022-11-12
restoptr-1.0.2/restoptr/inst/java/restopt-2.0.0.jar |only restoptr-1.0.3/restoptr/DESCRIPTION | 8 restoptr-1.0.3/restoptr/MD5 | 49 restoptr-1.0.3/restoptr/NEWS.md | 10 restoptr-1.0.3/restoptr/R/add_available_areas_constraint.R | 8 restoptr-1.0.3/restoptr/R/add_locked_out_constraint.R | 8 restoptr-1.0.3/restoptr/R/add_restorable_constraint.R | 11 restoptr-1.0.3/restoptr/R/add_settings.R | 12 restoptr-1.0.3/restoptr/R/restopt_problem.R | 19 restoptr-1.0.3/restoptr/R/restopt_solution.R | 13 restoptr-1.0.3/restoptr/R/zzz.R | 2 restoptr-1.0.3/restoptr/build/vignette.rds |binary restoptr-1.0.3/restoptr/inst/doc/case_study.Rmd | 2 restoptr-1.0.3/restoptr/inst/doc/case_study.html | 172 +-- restoptr-1.0.3/restoptr/inst/doc/restoptr.Rmd | 5 restoptr-1.0.3/restoptr/inst/doc/restoptr.html | 534 +++++----- restoptr-1.0.3/restoptr/inst/extdata/accessible_areas.gpkg |binary restoptr-1.0.3/restoptr/inst/extdata/case_study/available.gpkg |binary restoptr-1.0.3/restoptr/inst/java/restopt-2.0.1.jar |only restoptr-1.0.3/restoptr/man/add_available_areas_constraint.Rd | 6 restoptr-1.0.3/restoptr/man/add_locked_out_constraint.Rd | 6 restoptr-1.0.3/restoptr/man/add_restorable_constraint.Rd | 4 restoptr-1.0.3/restoptr/man/add_settings.Rd | 6 restoptr-1.0.3/restoptr/man/figures/logo.tif |only restoptr-1.0.3/restoptr/tests/testthat/test_solve.R | 4 restoptr-1.0.3/restoptr/vignettes/case_study.Rmd | 2 restoptr-1.0.3/restoptr/vignettes/restoptr.Rmd | 5 27 files changed, 477 insertions(+), 409 deletions(-)
Title: Public Economic Data and Quantitative Analysis
Description: Provides an interface to access public economic and financial data for
economic research and quantitative analysis. The data sources including
NBS, FRED, 163, Sina, Eastmoney and etc. It also provides quantitative
functions for trading strategies based on the 'data.table', 'TTR',
'PerformanceAnalytics' and etc packages.
Author: Shichen Xie [aut, cre]
Maintainer: Shichen Xie <xie@shichen.name>
Diff between pedquant versions 0.2.0 dated 2022-07-11 and 0.2.1 dated 2022-11-12
pedquant-0.2.0/pedquant/R/dim_admin_div_cn.R |only pedquant-0.2.0/pedquant/R/dim_country_currency.R |only pedquant-0.2.0/pedquant/R/dim_exchange_commodity.R |only pedquant-0.2.0/pedquant/R/dim_exchange_stock.R |only pedquant-0.2.0/pedquant/R/md_stock1_yahoo.R |only pedquant-0.2.0/pedquant/man/interval.Rd |only pedquant-0.2.1/pedquant/DESCRIPTION | 15 +- pedquant-0.2.1/pedquant/MD5 | 73 +++++------ pedquant-0.2.1/pedquant/NAMESPACE | 14 -- pedquant-0.2.1/pedquant/NEWS.md | 4 pedquant-0.2.1/pedquant/R/datasets.R | 2 pedquant-0.2.1/pedquant/R/ed_nbs.R | 7 - pedquant-0.2.1/pedquant/R/func_helper.R | 106 ----------------- pedquant-0.2.1/pedquant/R/md_0query.R | 6 pedquant-0.2.1/pedquant/R/md_1forex.R | 6 pedquant-0.2.1/pedquant/R/md_2bond.R | 9 - pedquant-0.2.1/pedquant/R/md_2money.R | 38 ++---- pedquant-0.2.1/pedquant/R/md_future.R | 34 ----- pedquant-0.2.1/pedquant/R/md_stock1_.R | 11 - pedquant-0.2.1/pedquant/R/md_stock1_163.R | 36 +++-- pedquant-0.2.1/pedquant/R/md_stock_symbol.R | 3 pedquant-0.2.1/pedquant/R/pq_freq.R | 3 pedquant-0.2.1/pedquant/R/pq_opr.R | 48 +++---- pedquant-0.2.1/pedquant/R/pq_orders.R | 35 +++++ pedquant-0.2.1/pedquant/R/pq_performance.R | 20 ++- pedquant-0.2.1/pedquant/R/pq_portfolio.R | 23 ++- pedquant-0.2.1/pedquant/R/pq_return.R | 2 pedquant-0.2.1/pedquant/R/sysdata.rda |binary pedquant-0.2.1/pedquant/README.md | 55 ++++---- pedquant-0.2.1/pedquant/data/dt_banks.rda |binary pedquant-0.2.1/pedquant/data/dt_ssec.rda |binary pedquant-0.2.1/pedquant/inst/extdata/md_stock1_yahoo.R |only pedquant-0.2.1/pedquant/man/dt_banks.Rd | 1 pedquant-0.2.1/pedquant/man/dt_ssec.Rd | 1 pedquant-0.2.1/pedquant/man/md_forex.Rd | 6 pedquant-0.2.1/pedquant/man/md_future_symbol.Rd | 5 pedquant-0.2.1/pedquant/man/md_money.Rd | 6 pedquant-0.2.1/pedquant/man/md_stock_symbol.Rd | 4 pedquant-0.2.1/pedquant/man/md_symbol.Rd | 2 pedquant-0.2.1/pedquant/man/pq_freq.Rd | 3 pedquant-0.2.1/pedquant/man/pq_performance.Rd | 3 41 files changed, 239 insertions(+), 342 deletions(-)
Title: Fixed Landscape Inference Method
Description: Likelihood-free inference method for stochastic models.
Uses a deterministic optimizer on simple simulations of the model
that are performed with a prior drawn randomness by applying the inverse transform method.
Is designed to work on its own and also by using the Julia package 'Jflimo'
available on the git page of the project: <https://metabarcoding.org/flimo>.
Author: Sylvain Moinard [aut, cre]
Maintainer: Sylvain Moinard <sylvain.moinard@univ-grenoble-alpes.fr>
Diff between flimo versions 0.1.2 dated 2022-08-31 and 0.1.3 dated 2022-11-12
DESCRIPTION | 10 ++-- MD5 | 16 +++---- NAMESPACE | 2 NEWS.md | 13 ++++- R/functions.R | 24 ++++++---- README.md | 107 +++++++++++++++++++++---------------------------- inst/doc/Examples.html | 37 ++++++++++------ man/flimoptim.Rd | 8 ++- man/flimoptim_R.Rd | 8 ++- 9 files changed, 119 insertions(+), 106 deletions(-)
Title: Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis
Description: Provides functions for the Bayesian analysis of extreme value
models. The 'rust' package <https://cran.r-project.org/package=rust> is
used to simulate a random sample from the required posterior distribution.
The functionality of 'revdbayes' is similar to the 'evdbayes' package
<https://cran.r-project.org/package=evdbayes>, which uses Markov Chain
Monte Carlo ('MCMC') methods for posterior simulation. In addition, there
are functions for making inferences about the extremal index, using
the models for threshold inter-exceedance times of Suveges and Davison
(2010) <doi:10.1214/09-AOAS292> and Holesovsky and Fusek (2020)
<doi:10.1007/s10687-020-00374-3>. Also provided are d,p,q,r functions for
the Generalised Extreme Value ('GEV') and Generalised Pareto ('GP')
distributions that deal appropriately with cases where the shape parameter
is very close to zero.
Author: Paul J. Northrop [aut, cre, cph],
Scott D. Grimshaw [ctb]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between revdbayes versions 1.4.9 dated 2022-05-10 and 1.5.0 dated 2022-11-12
revdbayes-1.4.9/revdbayes/src/init.c |only revdbayes-1.4.9/revdbayes/vignettes/ex1revdbayes.nb.html |only revdbayes-1.4.9/revdbayes/vignettes/ex2revdbayes.nb.html |only revdbayes-1.5.0/revdbayes/DESCRIPTION | 14 revdbayes-1.5.0/revdbayes/MD5 | 69 revdbayes-1.5.0/revdbayes/NEWS.md | 13 revdbayes-1.5.0/revdbayes/R/bayesplot.R | 1 revdbayes-1.5.0/revdbayes/R/dgaps.R | 1 revdbayes-1.5.0/revdbayes/R/kgaps.R | 1 revdbayes-1.5.0/revdbayes/R/predictive.R | 78 revdbayes-1.5.0/revdbayes/R/rposterior.R | 1 revdbayes-1.5.0/revdbayes/R/sample_diagnostics.R | 4 revdbayes-1.5.0/revdbayes/README.md | 1 revdbayes-1.5.0/revdbayes/build/partial.rdb |binary revdbayes-1.5.0/revdbayes/build/vignette.rds |binary revdbayes-1.5.0/revdbayes/inst/doc/revdbayes-a-vignette.R | 93 revdbayes-1.5.0/revdbayes/inst/doc/revdbayes-a-vignette.Rmd | 113 - revdbayes-1.5.0/revdbayes/inst/doc/revdbayes-a-vignette.html | 954 +++++++--- revdbayes-1.5.0/revdbayes/inst/doc/revdbayes-b-using-rcpp-vignette.R | 78 revdbayes-1.5.0/revdbayes/inst/doc/revdbayes-b-using-rcpp-vignette.Rmd | 86 revdbayes-1.5.0/revdbayes/inst/doc/revdbayes-b-using-rcpp-vignette.html | 636 ++++-- revdbayes-1.5.0/revdbayes/inst/doc/revdbayes-c-predictive-vignette.R | 2 revdbayes-1.5.0/revdbayes/inst/doc/revdbayes-c-predictive-vignette.Rmd | 2 revdbayes-1.5.0/revdbayes/inst/doc/revdbayes-c-predictive-vignette.html | 578 ++++-- revdbayes-1.5.0/revdbayes/inst/doc/revdbayes-d-kgaps-vignette.html | 436 +++- revdbayes-1.5.0/revdbayes/man/binpost.Rd | 1 revdbayes-1.5.0/revdbayes/man/plot.evpost.Rd | 2 revdbayes-1.5.0/revdbayes/man/pp_check.evpost.Rd | 1 revdbayes-1.5.0/revdbayes/man/predict.evpost.Rd | 32 revdbayes-1.5.0/revdbayes/man/print.summary.evpost.Rd | 1 revdbayes-1.5.0/revdbayes/man/set_prior.Rd | 4 revdbayes-1.5.0/revdbayes/man/summary.evpost.Rd | 1 revdbayes-1.5.0/revdbayes/src/RcppExports.cpp | 122 + revdbayes-1.5.0/revdbayes/tests/testthat/test-inf_priors.R | 5 revdbayes-1.5.0/revdbayes/vignettes/revdbayes-a-vignette.Rmd | 113 - revdbayes-1.5.0/revdbayes/vignettes/revdbayes-b-using-rcpp-vignette.Rmd | 86 revdbayes-1.5.0/revdbayes/vignettes/revdbayes-c-predictive-vignette.Rmd | 2 37 files changed, 2343 insertions(+), 1188 deletions(-)
Title: Easily Create and Style Tables for LaTeX, HTML and Other Formats
Description: Creates styled tables for data presentation. Export to HTML, LaTeX,
RTF, 'Word', 'Excel', and 'PowerPoint'. Simple, modern interface to manipulate
borders, size, position, captions, colours, text styles and number formatting.
Table cells can span multiple rows and/or columns.
Includes a 'huxreg' function for creation of regression tables, and 'quick_*'
one-liners to print data to a new document.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between huxtable versions 5.5.0 dated 2022-06-15 and 5.5.1 dated 2022-11-12
huxtable-5.5.0/huxtable/tests/testthat/404.html |only huxtable-5.5.1/huxtable/DESCRIPTION | 8 huxtable-5.5.1/huxtable/MD5 | 37 - huxtable-5.5.1/huxtable/NEWS.md | 6 huxtable-5.5.1/huxtable/R/creation.R | 5 huxtable-5.5.1/huxtable/R/html.R | 3 huxtable-5.5.1/huxtable/R/latex-dependencies.R | 2 huxtable-5.5.1/huxtable/R/package-docs.R | 14 huxtable-5.5.1/huxtable/R/quick-functions.R | 12 huxtable-5.5.1/huxtable/inst/doc/design-principles.html | 81 +-- huxtable-5.5.1/huxtable/inst/doc/huxreg.R | 14 huxtable-5.5.1/huxtable/inst/doc/huxreg.Rmd | 14 huxtable-5.5.1/huxtable/inst/doc/huxreg.html | 351 +++++++--------- huxtable-5.5.1/huxtable/inst/doc/huxtable.pdf |binary huxtable-5.5.1/huxtable/inst/doc/themes.html | 26 - huxtable-5.5.1/huxtable/man/as_huxtable.Rd | 7 huxtable-5.5.1/huxtable/man/huxtable-FAQ.Rd | 14 huxtable-5.5.1/huxtable/man/huxtable-news.Rd | 12 huxtable-5.5.1/huxtable/vignettes/huxreg.Rmd | 14 huxtable-5.5.1/huxtable/vignettes/huxtable.Rmd | 24 - 20 files changed, 335 insertions(+), 309 deletions(-)
Title: A Collection of Database, Data Structure, Visualization, and
Utility Functions for R
Description: The caroline R library contains dozens of functions useful
for: database migration (dbWriteTable2), database style joins &
aggregation (nerge, groupBy & bestBy), data structure
conversion (nv, tab2df), legend table making (sstable &
leghead), plot annotation (labsegs & mvlabs), data
visualization (pies, distro dots, & raPlot), character string
manipulation (m & pad), file I/O (write.delim), batch scripting
and more. The package's greatest contributions lie in the
database style merge, aggregation and interface functions
as well as in it's extensive use and propagation of
row, column and vector names in most functions.
Author: David Schruth
Maintainer: David Schruth <code@anthropoidea.org>
Diff between caroline versions 0.8.0 dated 2022-05-03 and 0.9.0 dated 2022-11-12
caroline-0.8.0/caroline/R/violins.R |only caroline-0.8.0/caroline/man/stats.Rd |only caroline-0.8.0/caroline/man/violins.Rd |only caroline-0.9.0/caroline/DESCRIPTION | 14 +++++++------- caroline-0.9.0/caroline/MD5 | 11 +++++------ caroline-0.9.0/caroline/NAMESPACE | 2 +- caroline-0.9.0/caroline/R/distro.dots.R |only caroline-0.9.0/caroline/man/distro.dots.Rd |only caroline-0.9.0/caroline/man/spieChart.Rd | 4 +--- 9 files changed, 14 insertions(+), 17 deletions(-)
Title: Wrapper Algorithm for All Relevant Feature Selection
Description: An all relevant feature selection wrapper algorithm.
It finds relevant features by comparing original attributes' importance with importance achievable at random, estimated using their permuted copies (shadows).
Author: Miron Bartosz Kursa [aut, cre]
,
Witold Remigiusz Rudnicki [aut]
Maintainer: Miron Bartosz Kursa <M.Kursa@icm.edu.pl>
Diff between Boruta versions 7.0.0 dated 2020-05-21 and 8.0.0 dated 2022-11-12
DESCRIPTION | 10 ++++---- MD5 | 43 ++++++++++++++++++++++++-------------- NAMESPACE | 3 ++ R/Boruta.R | 20 +++++------------ R/formula.R |only R/tools.R | 22 +++++++------------ R/trandapters.R |only build/partial.rdb |only build/vignette.rds |binary data/srx.rda |binary inst/CITATION | 4 +-- inst/NEWS | 10 ++++++++ inst/doc/inahurry.Rnw | 27 ++++++++++++----------- inst/doc/inahurry.pdf |binary inst/doc/transdapters.R |only inst/doc/transdapters.Rnw |only inst/doc/transdapters.pdf |only man/Boruta.Rd | 4 +-- man/conditionalTransdapter.Rd |only man/decohereTransdapter.Rd |only man/imputeTransdapter.Rd |only man/srx.Rd | 2 - tests/testthat/testBasic.R | 23 ++++++++++++++------ tests/testthat/testFormula.R |only tests/testthat/testSources.R | 1 tests/testthat/testTransdapters.R |only vignettes/inahurry.Rnw | 27 ++++++++++++----------- vignettes/transdapters.Rnw |only vignettes/transdapters.fls |only 29 files changed, 110 insertions(+), 86 deletions(-)
Title: Bayesian Power Prior Design
Description: Bayesian power/type I error calculation and model fitting using
the power prior and the normalized power prior for generalized linear models.
Detailed examples of applying the package are available at <arXiv:2112.14616>.
The Bayesian clinical trial design methodology is described in Chen et al. (2011)
<doi:10.1111/j.1541-0420.2011.01561.x>, and Psioda and Ibrahim (2019)
<doi:10.1093/biostatistics/kxy009>. The normalized power prior is described in Duan et al. (2006)
<doi:10.1002/env.752> and Ibrahim et al. (2015) <doi:10.1002/sim.6728>.
Author: Yueqi Shen [aut, cre],
Matthew A. Psioda [aut],
Joseph G. Ibrahim [aut]
Maintainer: Yueqi Shen <ys137@live.unc.edu>
Diff between BayesPPD versions 1.0.7 dated 2022-08-12 and 1.1.0 dated 2022-11-12
BayesPPD-1.0.7/BayesPPD/R/main_func.R |only BayesPPD-1.1.0/BayesPPD/DESCRIPTION | 15 + BayesPPD-1.1.0/BayesPPD/MD5 | 55 ++++--- BayesPPD-1.1.0/BayesPPD/NAMESPACE | 7 BayesPPD-1.1.0/BayesPPD/NEWS.md |only BayesPPD-1.1.0/BayesPPD/R/BayesPPD-package.R | 8 - BayesPPD-1.1.0/BayesPPD/R/PWK_main.R | 9 - BayesPPD-1.1.0/BayesPPD/R/RcppExports.R | 32 ++-- BayesPPD-1.1.0/BayesPPD/R/glm_fixed.R |only BayesPPD-1.1.0/BayesPPD/R/glm_random.R |only BayesPPD-1.1.0/BayesPPD/R/two_grp_fixed.R |only BayesPPD-1.1.0/BayesPPD/R/two_grp_random.R |only BayesPPD-1.1.0/BayesPPD/build |only BayesPPD-1.1.0/BayesPPD/inst |only BayesPPD-1.1.0/BayesPPD/man/BayesPPD-package.Rd | 5 BayesPPD-1.1.0/BayesPPD/man/glm.fixed.a0.Rd | 28 ++- BayesPPD-1.1.0/BayesPPD/man/glm.random.a0.Rd | 14 + BayesPPD-1.1.0/BayesPPD/man/normalizing.constant.Rd | 6 BayesPPD-1.1.0/BayesPPD/man/power.glm.fixed.a0.Rd | 33 +++- BayesPPD-1.1.0/BayesPPD/man/power.glm.random.a0.Rd | 34 +++- BayesPPD-1.1.0/BayesPPD/man/power.two.grp.fixed.a0.Rd | 9 - BayesPPD-1.1.0/BayesPPD/man/power.two.grp.random.a0.Rd | 10 - BayesPPD-1.1.0/BayesPPD/man/two.grp.fixed.a0.Rd | 8 - BayesPPD-1.1.0/BayesPPD/man/two.grp.random.a0.Rd | 7 BayesPPD-1.1.0/BayesPPD/src/PP_fixed.cpp | 61 +++++++ BayesPPD-1.1.0/BayesPPD/src/PP_fixed_glm.cpp | 131 +++++++++++------ BayesPPD-1.1.0/BayesPPD/src/PP_random.cpp | 109 ++++++++++---- BayesPPD-1.1.0/BayesPPD/src/PP_random_glm.cpp | 53 +++++- BayesPPD-1.1.0/BayesPPD/src/RcppExports.cpp | 76 +++++---- BayesPPD-1.1.0/BayesPPD/tests |only BayesPPD-1.1.0/BayesPPD/vignettes |only 31 files changed, 503 insertions(+), 207 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-22 1.0.6
2021-06-25 1.0.5
2021-05-07 1.0.4
2021-04-02 1.0.3