Title: Policy Learning via Doubly Robust Empirical Welfare Maximization
over Trees
Description: Learn optimal policies via doubly robust empirical
welfare maximization over trees. Given doubly robust reward estimates, this package
finds a rule-based treatment prescription policy, where the policy takes the form of
a shallow decision tree that is globally (or close to) optimal.
Author: Erik Sverdrup [aut, cre],
Ayush Kanodia [aut],
Zhengyuan Zhou [aut],
Susan Athey [aut],
Stefan Wager [aut]
Maintainer: Erik Sverdrup <erikcs@stanford.edu>
Diff between policytree versions 1.2.0 dated 2022-03-17 and 1.2.1 dated 2022-11-19
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/hybrid_policy_tree.R | 23 +++++++++++++++-------- R/policy_tree.R | 6 ++++-- man/conditional_means.Rd | 10 +++++----- man/double_robust_scores.Rd | 10 +++++----- man/policy_tree.Rd | 3 ++- man/predict.policy_tree.Rd | 3 ++- 8 files changed, 44 insertions(+), 33 deletions(-)
Title: Navigation Menu for Pipe-Friendly Data Processing
Description: Provides a navigation menu to enable pipe-friendly data processing for hierarchical data structures.
By activating the menu items, you can perform operations on each item while maintaining the overall structure in attributes.
Author: Mizuki Uchida [aut, cre]
Maintainer: Mizuki Uchida <uchidamizuki@vivaldi.net>
Diff between navigatr versions 0.1.2 dated 2022-05-14 and 0.2.0 dated 2022-11-19
navigatr-0.1.2/navigatr/R/dplyr.R |only navigatr-0.1.2/navigatr/R/menu.R |only navigatr-0.1.2/navigatr/R/reky.R |only navigatr-0.1.2/navigatr/man/is_item.Rd |only navigatr-0.1.2/navigatr/man/is_menu.Rd |only navigatr-0.1.2/navigatr/tests/testthat/test-dplyr.R |only navigatr-0.1.2/navigatr/tests/testthat/test-menu.R |only navigatr-0.2.0/navigatr/DESCRIPTION | 16 +-- navigatr-0.2.0/navigatr/MD5 | 41 ++++---- navigatr-0.2.0/navigatr/NAMESPACE | 36 ++----- navigatr-0.2.0/navigatr/NEWS.md | 8 + navigatr-0.2.0/navigatr/R/activate.R | 66 +++++++------ navigatr-0.2.0/navigatr/R/deprecated.R |only navigatr-0.2.0/navigatr/R/item.R | 31 ++---- navigatr-0.2.0/navigatr/R/itemise.R | 34 +------ navigatr-0.2.0/navigatr/R/nav.R |only navigatr-0.2.0/navigatr/R/nav_input.R |only navigatr-0.2.0/navigatr/R/nav_menu.R |only navigatr-0.2.0/navigatr/R/navigatr-package.R | 1 navigatr-0.2.0/navigatr/R/rekey.R | 37 ++++++- navigatr-0.2.0/navigatr/README.md | 76 ++++++++++------ navigatr-0.2.0/navigatr/man/activate.Rd | 46 +++++---- navigatr-0.2.0/navigatr/man/itemise.Rd | 51 ++++------ navigatr-0.2.0/navigatr/man/new_menu.Rd | 35 +------ navigatr-0.2.0/navigatr/man/new_nav_input.Rd |only navigatr-0.2.0/navigatr/man/new_nav_menu.Rd |only navigatr-0.2.0/navigatr/man/rekey.Rd | 18 ++- navigatr-0.2.0/navigatr/tests/testthat/test-nav_input.R |only navigatr-0.2.0/navigatr/tests/testthat/test-nav_menu.R |only 29 files changed, 255 insertions(+), 241 deletions(-)
Title: Implementation of the Q-Q Boxplot
Description: A system to implement the Q-Q boxplot. It is implemented as an
extension to 'ggplot2'. The Q-Q boxplot is an amalgam of the boxplot and the
Q-Q plot and allows the user to rapidly examine summary statistics and tail
behavior for multiple distributions in the same pane. As an extension of
the 'ggplot2' implementation of the boxplot, possible modifications to the
boxplot extend to the Q-Q boxplot.
Author: Jordan Rodu [aut, cre]
Maintainer: Jordan Rodu <jordan.rodu@gmail.com>
Diff between qqboxplot versions 0.2.0 dated 2022-03-25 and 0.3.0 dated 2022-11-19
DESCRIPTION | 8 MD5 | 36 +- NEWS.md | 8 R/geom_qqboxplot.R | 1 R/helperfuns.R | 30 +- R/stat_qqboxplot.R | 1 R/utilities.R | 4 build/vignette.rds |binary inst/doc/qqboxplot-basic-usage.html | 238 ++++++++++++++++- inst/doc/qqboxplot-paper-replication.html | 420 +++++++++++++++++++++++------- man/comparison_dataset.Rd | 38 +- man/expression_data.Rd | 52 +-- man/geom_qqboxplot.Rd | 373 ++++++++++---------------- man/indicators.Rd | 60 ++-- man/population_brain_data.Rd | 54 +-- man/qqboxplot.Rd | 18 - man/simulated_data.Rd | 52 +-- man/spike_data.Rd | 52 +-- man/stat_qqboxplot.Rd | 211 +++++++-------- 19 files changed, 1020 insertions(+), 636 deletions(-)
Title: Individual-Level, Summary-Level and Single-Step Bayesian
Regression Model
Description: A user-friendly tool to fit Bayesian regression models. It can fit 3 types of Bayesian models using individual-level, summary-level, and individual plus pedigree-level (single-step) data for both Genomic prediction/selection (GS) and Genome-Wide Association Study (GWAS), it was designed to estimate joint effects and genetic parameters for a complex trait, including:
(1) fixed effects and coefficients of covariates,
(2) environmental random effects, and its corresponding variance,
(3) genetic variance,
(4) residual variance,
(5) heritability,
(6) genomic estimated breeding values (GEBV) for both genotyped and non-genotyped individuals,
(7) SNP effect size,
(8) phenotype/genetic variance explained (PVE) for single or multiple SNPs,
(9) posterior probability of association of the genomic window (WPPA),
(10) posterior inclusive probability (PIP).
The functions are not limited, we will keep on going in enriching it with more features.
References: Meuwissen et al. (2001) <doi:10.1093/gene [...truncated...]
Author: Lilin Yin [aut, cre, cph],
Haohao Zhang [aut, cph],
Xiaolei Liu [aut, cph]
Maintainer: Lilin Yin <ylilin@163.com>
Diff between hibayes versions 1.1.0 dated 2022-05-25 and 2.0.0 dated 2022-11-19
hibayes-1.1.0/hibayes/inst/extdata/example |only hibayes-1.1.0/hibayes/inst/extdata/example.bed |only hibayes-1.1.0/hibayes/inst/extdata/example.bim |only hibayes-1.1.0/hibayes/inst/extdata/example.fam |only hibayes-1.1.0/hibayes/inst/extdata/geno |only hibayes-1.1.0/hibayes/inst/extdata/geno.bed |only hibayes-1.1.0/hibayes/inst/extdata/geno.bim |only hibayes-1.1.0/hibayes/inst/extdata/geno.fam |only hibayes-1.1.0/hibayes/inst/extdata/geno.ma |only hibayes-1.1.0/hibayes/inst/extdata/ped.txt |only hibayes-1.1.0/hibayes/inst/extdata/pheno.txt |only hibayes-2.0.0/hibayes/DESCRIPTION | 10 - hibayes-2.0.0/hibayes/MD5 | 61 +++--- hibayes-2.0.0/hibayes/NAMESPACE | 10 + hibayes-2.0.0/hibayes/R/RcppExports.R | 16 - hibayes-2.0.0/hibayes/R/bayes.r | 219 +++++++++++++++-------- hibayes-2.0.0/hibayes/R/blrMod.r |only hibayes-2.0.0/hibayes/R/exports.R | 23 ++ hibayes-2.0.0/hibayes/R/ldm.r | 14 - hibayes-2.0.0/hibayes/R/read_plink.r | 35 ++- hibayes-2.0.0/hibayes/R/sbayes.r | 82 +++++--- hibayes-2.0.0/hibayes/R/ssbayes.r | 230 ++++++++++++++----------- hibayes-2.0.0/hibayes/inst/extdata/demo |only hibayes-2.0.0/hibayes/inst/extdata/demo.bed |only hibayes-2.0.0/hibayes/inst/extdata/demo.bim |only hibayes-2.0.0/hibayes/inst/extdata/demo.fam |only hibayes-2.0.0/hibayes/inst/extdata/demo.ma |only hibayes-2.0.0/hibayes/inst/extdata/demo.ped |only hibayes-2.0.0/hibayes/inst/extdata/demo.phe |only hibayes-2.0.0/hibayes/man/bayes.Rd | 92 ++++++---- hibayes-2.0.0/hibayes/man/ldmat.Rd | 14 - hibayes-2.0.0/hibayes/man/read_plink.Rd | 4 hibayes-2.0.0/hibayes/man/sbayes.Rd | 51 +++-- hibayes-2.0.0/hibayes/man/ssbayes.Rd | 101 +++++----- hibayes-2.0.0/hibayes/src/Bayes.cpp | 50 ++++- hibayes-2.0.0/hibayes/src/RcppExports.cpp | 40 ++-- hibayes-2.0.0/hibayes/src/SBayesD.cpp | 11 - hibayes-2.0.0/hibayes/src/SBayesS.cpp | 7 hibayes-2.0.0/hibayes/src/solver.cpp | 17 + hibayes-2.0.0/hibayes/src/solver.h | 1 hibayes-2.0.0/hibayes/src/tXXmat.cpp | 12 - 41 files changed, 678 insertions(+), 422 deletions(-)
Title: Introduction to Statistical Learning, Second Edition
Description: We provide the collection of data-sets used in the book 'An Introduction to Statistical Learning with Applications in R, Second Edition'. These include many data-sets that we used in the first edition (some with minor changes), and some new datasets.
Author: Gareth James [aut],
Daniela Witten [aut],
Trevor Hastie [aut, cre],
Rob Tibshirani [aut],
Balasubramanian Narasimhan [ctb]
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between ISLR2 versions 1.3-1 dated 2022-01-10 and 1.3-2 dated 2022-11-19
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/BrainCancer.Rd | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Collection of Convenient Functions for Common Statistical
Computations
Description: Collection of convenient functions for common statistical computations,
which are not directly provided by R's base or stats packages.
This package aims at providing, first, shortcuts for statistical measures,
which otherwise could only be calculated with additional effort
(like Cramer's V, Phi, or effect size statistics like Eta or Omega squared),
or for which currently no functions available. Second, another focus
lies on weighted variants of common statistical measures and tests
like weighted standard error, mean, t-test, correlation, and more.
Author: Daniel Luedecke [aut, cre]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between sjstats versions 0.18.1 dated 2021-01-09 and 0.18.2 dated 2022-11-19
DESCRIPTION | 16 ++++---- MD5 | 50 +++++++++++++-------------- NAMESPACE | 28 --------------- NEWS.md | 6 ++- R/Deprecated.R | 79 +++++++++++-------------------------------- R/anova_stats.R | 5 -- R/auto_prior.R | 4 -- R/boot_ci.R | 5 -- R/gof.R | 2 - R/mean_n.R | 2 - R/prop.R | 3 - R/samplesize_mixed.R | 4 +- R/sjStatistics.R | 2 - R/wtd_cor.R | 1 R/wtd_median.R | 2 - R/wtd_ttest.R | 2 - R/xtab_statistics.R | 5 -- build/partial.rdb |binary man/auto_prior.Rd | 1 man/boot_ci.Rd | 1 man/chisq_gof.Rd | 2 - man/crosstable_statistics.Rd | 1 man/mean_n.Rd | 2 - man/prop.Rd | 1 man/r2.Rd | 22 ++++------- man/samplesize_mixed.Rd | 4 +- 26 files changed, 78 insertions(+), 172 deletions(-)
Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, principal component analysis and correlation matrices,
cluster analyses, scatter plots, stacked scales, effects plots of regression
models (including interaction terms) and much more. This package supports
labelled data.
Author: Daniel Luedecke [aut, cre] ,
Alexander Bartel [ctb] ,
Carsten Schwemmer [ctb],
Chuck Powell [ctb] ,
Amir Djalovski [ctb],
Johannes Titz [ctb]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between sjPlot versions 2.8.11 dated 2022-08-07 and 2.8.12 dated 2022-11-19
DESCRIPTION | 8 MD5 | 72 ++-- NEWS.md | 16 R/plot_model.R | 5 R/tab_model.R | 4 README.md | 2 build/vignette.rds |binary inst/doc/blackwhitefigures.html | 19 - inst/doc/custplot.html | 37 +- inst/doc/plot_interactions.html | 23 - inst/doc/plot_likert_scales.html | 31 + inst/doc/plot_marginal_effects.R | 2 inst/doc/plot_marginal_effects.html | 17 - inst/doc/plot_model_estimates.html | 43 +- inst/doc/sjtitemanalysis.html | 17 - inst/doc/tab_bayes.R | 2 inst/doc/tab_bayes.html | 39 +- inst/doc/tab_mixed.R | 2 inst/doc/tab_mixed.html | 83 ++--- inst/doc/tab_model_estimates.html | 21 - inst/doc/tab_model_robust.R | 2 inst/doc/tab_model_robust.html | 45 +- inst/doc/table_css.html | 17 - man/dist_chisq.Rd | 130 ++++---- man/dist_f.Rd | 122 +++---- man/dist_norm.Rd | 120 +++---- man/dist_t.Rd | 116 +++---- man/plot_grid.Rd | 118 +++---- man/plot_model.Rd | 5 man/plot_residuals.Rd | 140 ++++---- man/plot_stackfrq.Rd | 278 ++++++++--------- man/save_plot.Rd | 124 +++---- man/set_theme.Rd | 582 ++++++++++++++++++------------------ man/sjPlot-themes.Rd | 304 +++++++++--------- man/sjp.poly.Rd | 278 ++++++++--------- man/sjplot.Rd | 162 +++++----- man/tab_model.Rd | 4 37 files changed, 1544 insertions(+), 1446 deletions(-)
Title: Kinetic Evaluation of Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006,
2014). Includes a function for conveniently defining differential equation
models, model solution based on eigenvalues if possible or using numerical
solvers. If a C compiler (on windows: 'Rtools') is installed, differential
equation models are solved using automatically generated C functions.
Heteroscedasticity can be taken into account using variance by variable or
two-component error models as described by Ranke and Meinecke (2018)
<doi:10.3390/environments6120124>. Interfaces to several nonlinear
mixed-effects model packages are available, some of which are described by
Ranke et al. (2021) <doi:10.3390/environments8080071>. Please note that no
warranty is implied for correctness of results or fitness for a particular
purpose.
Author: Johannes Ranke [aut, cre, cph]
,
Katrin Lindenberger [ctb] ),
Rene Lehmann [ctb] and invilr),
Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke <johannes.ranke@jrwb.de>
Diff between mkin versions 1.2.0 dated 2022-11-17 and 1.2.1 dated 2022-11-19
mkin-1.2.0/mkin/tests/testthat/_snaps/multistart/llhist-for-biphasic-saemix-fit.svg |only mkin-1.2.0/mkin/tests/testthat/_snaps/multistart/parplot-for-biphasic-saemix-fit.svg |only mkin-1.2.0/mkin/tests/testthat/_snaps/plot/mixed-model-fit-for-saem-object-with-mkin-transformations.svg |only mkin-1.2.0/mkin/tests/testthat/print_dfop_saemix_1.txt |only mkin-1.2.0/mkin/tests/testthat/print_multistart_biphasic.txt |only mkin-1.2.0/mkin/tests/testthat/summary_saem_biphasic_s.txt |only mkin-1.2.1/mkin/DESCRIPTION | 8 mkin-1.2.1/mkin/MD5 | 67 +++-- mkin-1.2.1/mkin/NEWS.md | 16 + mkin-1.2.1/mkin/R/ds_mixed.R |only mkin-1.2.1/mkin/R/logLik.mkinfit.R | 1 mkin-1.2.1/mkin/R/parplot.R | 19 + mkin-1.2.1/mkin/R/saem.R | 3 mkin-1.2.1/mkin/data/ds_mixed.rda |only mkin-1.2.1/mkin/inst/dataset_generation/ds_mixed.R |only mkin-1.2.1/mkin/inst/doc/FOCUS_D.html | 10 mkin-1.2.1/mkin/inst/doc/FOCUS_L.html | 54 ++-- mkin-1.2.1/mkin/inst/doc/mkin.html | 2 mkin-1.2.1/mkin/inst/doc/twa.html | 2 mkin-1.2.1/mkin/man/ds_mixed.Rd |only mkin-1.2.1/mkin/man/parplot.Rd | 5 mkin-1.2.1/mkin/man/saem.Rd | 2 mkin-1.2.1/mkin/tests/testthat/_snaps/multistart/llhist-for-dfop-sfo-fit.svg |only mkin-1.2.1/mkin/tests/testthat/_snaps/multistart/llhist-for-sfo-fit.svg | 30 +- mkin-1.2.1/mkin/tests/testthat/_snaps/multistart/mixed-model-fit-for-saem-object-with-mkin-transformations.svg |only mkin-1.2.1/mkin/tests/testthat/_snaps/multistart/parplot-for-dfop-sfo-fit.svg |only mkin-1.2.1/mkin/tests/testthat/_snaps/multistart/parplot-for-sfo-fit.new.svg |only mkin-1.2.1/mkin/tests/testthat/_snaps/multistart/parplot-for-sfo-fit.svg | 88 +++---- mkin-1.2.1/mkin/tests/testthat/anova_sfo_saem.txt | 10 mkin-1.2.1/mkin/tests/testthat/print_dfop_saem_1.txt |only mkin-1.2.1/mkin/tests/testthat/print_fits_synth_const.txt | 2 mkin-1.2.1/mkin/tests/testthat/print_mmkin_sfo_1_mixed.txt | 4 mkin-1.2.1/mkin/tests/testthat/print_multistart_dfop_sfo.txt |only mkin-1.2.1/mkin/tests/testthat/print_sfo_saem_1_reduced.txt | 12 - mkin-1.2.1/mkin/tests/testthat/setup_script.R | 120 +--------- mkin-1.2.1/mkin/tests/testthat/summary_hfit_sfo_tc.txt | 26 +- mkin-1.2.1/mkin/tests/testthat/summary_saem_dfop_sfo_s.txt |only mkin-1.2.1/mkin/tests/testthat/test_AIC.R | 2 mkin-1.2.1/mkin/tests/testthat/test_mixed.R | 34 +- mkin-1.2.1/mkin/tests/testthat/test_multistart.R | 47 ++- mkin-1.2.1/mkin/tests/testthat/test_plot.R | 22 - mkin-1.2.1/mkin/tests/testthat/test_saemix_parent.R | 42 +-- mkin-1.2.1/mkin/vignettes/web_only/saem_benchmarks.rda |binary 43 files changed, 301 insertions(+), 327 deletions(-)
Title: Bindings to Selected 'liblwgeom' Functions for Simple Features
Description: Access to selected functions found in 'liblwgeom' <https://github.com/postgis/postgis/tree/master/liblwgeom>, the light-weight geometry library used by 'PostGIS' <http://postgis.net/>.
Author: Edzer Pebesma [aut, cre] ,
Colin Rundel [ctb],
Andy Teucher [ctb],
liblwgeom developers [cph]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between lwgeom versions 0.2-9 dated 2022-10-01 and 0.2-10 dated 2022-11-19
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ configure | 18 +++++++++--------- configure.ac | 18 +++++++++--------- src/liblwgeom/liblwgeom.h | 2 +- src/liblwgeom/lwboundingcircle.c | 4 ++-- src/liblwgeom/lwgeom_api.c | 6 +++--- src/liblwgeom/lwgeom_geos.c | 2 +- src/liblwgeom/lwin_wkt_lex.c | 4 ++-- 10 files changed, 43 insertions(+), 39 deletions(-)
Title: Big Quadratic Inverse Covariance Estimation
Description: Use Newton's method, coordinate descent, and METIS clustering
to solve the L1 regularized Gaussian MLE inverse covariance
matrix estimation problem.
Author: Khalid B. Kunji [aut, cre],
Cho-Jui Hsieh [ctb],
Matyas A. Sustik [ctb],
Inderjit S. Dhillon [ctb],
Pradeep Ravikumar [ctb],
Tuo Zhao [ctb],
Xingguo Li [ctb],
Han Liu [ctb],
Kathryn Roeder [ctb],
John Lafferty [ctb],
Larry Wasserman [ctb],
George Kar [...truncated...]
Maintainer: Khalid B. Kunji <kkunji@hbku.edu.qa>
Diff between BigQuic versions 1.1-11 dated 2022-03-04 and 1.1-13 dated 2022-11-19
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/BigQuic.R | 11 ++++++----- R/BigQuic.select.R | 3 ++- build/partial.rdb |binary src/kwayvolfm.c | 2 +- src/pcg_basic.c | 2 +- src/rename.h | 2 +- src/struct.h | 2 +- src/util.c | 10 +++++----- 10 files changed, 30 insertions(+), 28 deletions(-)
Title: Making Census Data More Usable
Description: Creates a common framework for organizing, naming, and gathering
population, age, race, and ethnicity data from the Census Bureau. Accesses
the API <https://www.census.gov/data/developers/data-sets.html>. Provides
tools for adding information to existing data to line up with Census data.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <christopherkenny@fas.harvard.edu>
Diff between censable versions 0.0.3 dated 2021-10-05 and 0.0.5 dated 2022-11-19
DESCRIPTION | 24 - LICENSE | 4 MD5 | 154 +++++----- NAMESPACE | 128 ++++---- NEWS.md | 6 R/add_r_environ.R | 5 R/api.R |only R/api_key.R |only R/build_acs.R | 38 +- R/build_dec.R | 219 ++++++++------- R/censable-package.R | 6 R/collapse.R | 286 +++++++++---------- R/constants.R |only R/county_data.R |only R/data.R | 250 ++++++++--------- R/geoid.R | 43 ++ R/helpers.R | 72 ---- R/join.R | 2 R/match.R | 224 +++++++-------- R/memoise.R | 38 +- R/recode.R | 580 ++++++++++++++++++++-------------------- R/utils-pipe.R | 28 - R/utils-tidy-eval.R | 138 ++++++--- README.md | 146 ++++------ inst |only man/add_r_environ.Rd | 74 ++--- man/breakdown_geoid.Rd | 58 ++-- man/build_acs.Rd | 215 +++++++------- man/build_dec.Rd | 210 +++++++------- man/collapse4.Rd | 48 +-- man/collapse4_pop.Rd | 48 +-- man/collapse4_vap.Rd | 48 +-- man/collapse5.Rd | 48 +-- man/collapse5_pop.Rd | 48 +-- man/collapse5_vap.Rd | 48 +-- man/construct_geoid.Rd | 120 ++++---- man/custom_geoid.Rd | 48 +-- man/fips_2000.Rd | 46 +-- man/fips_2010.Rd | 46 +-- man/fips_2020.Rd | 46 +-- man/join_abb_ansi.Rd | 48 +-- man/join_abb_fips.Rd | 48 +-- man/join_abb_name.Rd | 48 +-- man/join_ansi_abb.Rd | 48 +-- man/join_ansi_fips.Rd | 48 +-- man/join_ansi_name.Rd | 48 +-- man/join_fips_abb.Rd | 48 +-- man/join_fips_ansi.Rd | 48 +-- man/join_fips_name.Rd | 48 +-- man/join_name_abb.Rd | 48 +-- man/join_name_ansi.Rd | 48 +-- man/join_name_fips.Rd | 48 +-- man/key.Rd |only man/match_abb.Rd | 44 +-- man/match_ansi.Rd | 44 +-- man/match_fips.Rd | 44 +-- man/match_name.Rd | 44 +-- man/mt_county.Rd | 80 ++--- man/pipe.Rd | 40 +- man/recode_abb_ansi.Rd | 48 +-- man/recode_abb_fips.Rd | 48 +-- man/recode_abb_name.Rd | 48 +-- man/recode_ansi_abb.Rd | 48 +-- man/recode_ansi_fips.Rd | 48 +-- man/recode_ansi_name.Rd | 48 +-- man/recode_fips_abb.Rd | 48 +-- man/recode_fips_ansi.Rd | 48 +-- man/recode_fips_name.Rd | 48 +-- man/recode_name_abb.Rd | 48 +-- man/recode_name_ansi.Rd | 48 +-- man/recode_name_fips.Rd | 48 +-- man/stata.Rd | 52 +-- man/tidyeval.Rd | 149 ++++++---- tests/spelling.R |only tests/testthat.R | 14 tests/testthat/helper.R |only tests/testthat/test-build_acs.R |only tests/testthat/test-build_dec.R |only tests/testthat/test-collapse.R | 82 ++--- tests/testthat/test-geoid.R | 26 - tests/testthat/test-join.R | 108 +++---- tests/testthat/test-match.R | 94 +++--- tests/testthat/test-recode.R | 106 +++---- 83 files changed, 2867 insertions(+), 2754 deletions(-)
Title: Syntactically Awesome Style Sheets ('Sass')
Description: An 'SCSS' compiler, powered by the 'LibSass' library. With this,
R developers can use variables, inheritance, and functions to generate
dynamic style sheets. The package uses the 'Sass CSS' extension language,
which is stable, powerful, and CSS compatible.
Author: Joe Cheng [aut],
Timothy Mastny [aut],
Richard Iannone [aut] ,
Barret Schloerke [aut] ,
Carson Sievert [aut, cre] ,
Christophe Dervieux [ctb] ,
RStudio [cph, fnd],
Sass Open Source Foundation [ctb, cph] ,
Greter Marcel [ctb, cph] ,
Mifsud Michael [ct [...truncated...]
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between sass versions 0.4.2 dated 2022-07-16 and 0.4.3 dated 2022-11-19
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NEWS.md | 6 ++++++ build/vignette.rds |binary inst/doc/sass.html | 17 ++++++++++++----- man/sass-deprecated.Rd | 4 ++-- man/sass_layer.Rd | 12 ++++++------ src/libsass/docs/allocator.md |only src/libsass/docs/developing.md |only src/libsass/src/json.cpp | 2 +- 10 files changed, 40 insertions(+), 25 deletions(-)
Title: Automated Grading of R Scripts
Description: Tools for grading the coding style and documentation of R
scripts. This is the R component of Roger the Omni Grader, an
automated grading system for computer programming projects based on
Unix shell scripts; see <https://gitlab.com/roger-project>. The
package also provides an R interface to the shell scripts. Inspired by
the lintr package.
Author: Vincent Goulet [aut, cre],
Samuel Frechette [aut],
Jean-Christophe Langlois [aut],
Jim Hester [ctb]
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between roger versions 1.3-0 dated 2022-11-01 and 1.3-1 dated 2022-11-19
DESCRIPTION | 8 +++---- MD5 | 18 ++++++++-------- R/commas_style.R | 15 ++++++++----- inst/NEWS.Rd | 11 +++++++++ inst/po/en@quot/LC_MESSAGES/R-roger.mo |binary inst/po/fr/LC_MESSAGES/R-roger.mo |binary man/commas_style.Rd | 10 ++++++-- po/R-fr.po | 7 +----- po/R-roger.pot | 7 +----- tests/style-tests.R | 37 +++++++++++++++++++++++++-------- 10 files changed, 73 insertions(+), 40 deletions(-)
Title: Generate QRcodes with R
Description: Create QRcode in R.
Author: Thierry Onkelinx [aut, cre] ,
Victor Teh [aut]
Maintainer: Thierry Onkelinx <thierry.onkelinx@inbo.be>
Diff between qrcode versions 0.1.4 dated 2021-10-13 and 0.2.0 dated 2022-11-19
qrcode-0.1.4/qrcode/R/DataStringBinary.R |only qrcode-0.1.4/qrcode/R/ECgenerator.R |only qrcode-0.1.4/qrcode/R/formatPolyGen.R |only qrcode-0.1.4/qrcode/R/polynomialGenerator.R |only qrcode-0.1.4/qrcode/R/qrCodeSpec.R |only qrcode-0.1.4/qrcode/R/qrFillUpMatrix.R |only qrcode-0.1.4/qrcode/R/qrInitMatrix.R |only qrcode-0.1.4/qrcode/R/qrInterleave.R |only qrcode-0.1.4/qrcode/R/qrMask.R |only qrcode-0.1.4/qrcode/R/qrVersionInfo.R |only qrcode-0.1.4/qrcode/R/versionPolyGen.R |only qrcode-0.1.4/qrcode/man/DataStringBinary.Rd |only qrcode-0.1.4/qrcode/man/ECgenerator.Rd |only qrcode-0.1.4/qrcode/man/formatPolyGen.Rd |only qrcode-0.1.4/qrcode/man/polynomialGenerator.Rd |only qrcode-0.1.4/qrcode/man/qrFillUpMatrix.Rd |only qrcode-0.1.4/qrcode/man/qrInitMatrix.Rd |only qrcode-0.1.4/qrcode/man/qrInterleave.Rd |only qrcode-0.1.4/qrcode/man/qrMask.Rd |only qrcode-0.1.4/qrcode/man/qrVersionInfo.Rd |only qrcode-0.1.4/qrcode/man/qrcode_gen.Rd |only qrcode-0.1.4/qrcode/man/versionPolyGen.Rd |only qrcode-0.1.4/qrcode/tests/testthat/_snaps |only qrcode-0.1.4/qrcode/tests/testthat/test_qrcode_gen.R |only qrcode-0.2.0/qrcode/DESCRIPTION | 23 qrcode-0.2.0/qrcode/MD5 | 72 +- qrcode-0.2.0/qrcode/NAMESPACE | 10 qrcode-0.2.0/qrcode/NEWS.md | 10 qrcode-0.2.0/qrcode/R/data_string_binary.R |only qrcode-0.2.0/qrcode/R/ec_generator.R |only qrcode-0.2.0/qrcode/R/format_poly_gen.R |only qrcode-0.2.0/qrcode/R/generate_svg.R | 88 ++ qrcode-0.2.0/qrcode/R/polynomial_generator.R |only qrcode-0.2.0/qrcode/R/qr_code.R | 4 qrcode-0.2.0/qrcode/R/qr_event.R |only qrcode-0.2.0/qrcode/R/qr_fill_up_matrix.R |only qrcode-0.2.0/qrcode/R/qr_init_matrix.R |only qrcode-0.2.0/qrcode/R/qr_interleave.R |only qrcode-0.2.0/qrcode/R/qr_logo.R |only qrcode-0.2.0/qrcode/R/qr_mask.R |only qrcode-0.2.0/qrcode/R/qr_version.R | 4 qrcode-0.2.0/qrcode/R/qr_version_info.R |only qrcode-0.2.0/qrcode/R/qr_wifi.R |only qrcode-0.2.0/qrcode/R/qrcode_gen.R | 94 --- qrcode-0.2.0/qrcode/R/version_poly_gen.R |only qrcode-0.2.0/qrcode/README.md | 25 qrcode-0.2.0/qrcode/inst/CITATION | 9 qrcode-0.2.0/qrcode/inst/en_gb.dic |only qrcode-0.2.0/qrcode/man/defunct.Rd |only qrcode-0.2.0/qrcode/man/figures/qr.svg | 468 +++++++-------- qrcode-0.2.0/qrcode/man/generate_svg.Rd | 52 + qrcode-0.2.0/qrcode/man/plot.qr_code.Rd | 4 qrcode-0.2.0/qrcode/man/print.qr_code.Rd | 4 qrcode-0.2.0/qrcode/man/qr_code.Rd | 4 qrcode-0.2.0/qrcode/man/qr_event.Rd |only qrcode-0.2.0/qrcode/man/qr_logo.Rd |only qrcode-0.2.0/qrcode/man/qr_wifi.Rd |only qrcode-0.2.0/qrcode/tests/testthat/test_e_generate_svg.R |only qrcode-0.2.0/qrcode/tests/testthat/test_e_qr_event.R |only 59 files changed, 457 insertions(+), 414 deletions(-)
Title: Tools for Plant Ecophysiology & Modeling
Description: Contains modeling and analytical tools for plant ecophysiology.
MODELING: Simulate C3 photosynthesis using the Farquhar, von Caemmerer,
Berry (1980) <doi:10.1007/BF00386231> model as described in Buckley and
Diaz-Espejo (2015) <doi:10.1111/pce.12459>. It uses units to ensure that
parameters are properly specified and transformed before calculations.
Temperature response functions get automatically "baked" into all
parameters based on leaf temperature following Bernacchi et al. (2002)
<doi:10.1104/pp.008250>. The package includes boundary layer, cuticular,
stomatal, and mesophyll conductances to CO2, which each can vary on the
upper and lower portions of the leaf. Use straightforward functions to
simulate photosynthesis over environmental gradients such as Photosynthetic
Photon Flux Density (PPFD) and leaf temperature, or over trait gradients
such as CO2 conductance or photochemistry.
ANALYTICAL TOOLS: Fit ACi (Farquhar et al. (1980) <doi:10.1007/BF00386231>)
and [...truncated...]
Author: Joseph Stinziano [aut] ,
Cassaundra Roback [aut],
Demi Sargent [aut],
Bridget Murphy [aut],
Patrick Hudson [aut, dtc],
Chris Muir [aut, cre]
Maintainer: Chris Muir <cdmuir@hawaii.edu>
Diff between photosynthesis versions 2.1.0 dated 2022-11-08 and 2.1.1 dated 2022-11-19
photosynthesis-2.1.0/photosynthesis/tests/testthat/test-fit_aq_response.R |only photosynthesis-2.1.1/photosynthesis/DESCRIPTION | 22 photosynthesis-2.1.1/photosynthesis/MD5 | 85 - photosynthesis-2.1.1/photosynthesis/NAMESPACE | 7 photosynthesis-2.1.1/photosynthesis/NEWS.md | 11 photosynthesis-2.1.1/photosynthesis/R/aq_response.R | 12 photosynthesis-2.1.1/photosynthesis/R/fit_PV_curve.R | 6 photosynthesis-2.1.1/photosynthesis/R/fit_aci_response.R | 8 photosynthesis-2.1.1/photosynthesis/R/fit_aq_response.R | 266 +++- photosynthesis-2.1.1/photosynthesis/R/fit_hyrda_vuln_curve.R | 16 photosynthesis-2.1.1/photosynthesis/R/fit_photosynthesis.R |only photosynthesis-2.1.1/photosynthesis/R/fit_r_light.R | 588 ++++++++-- photosynthesis-2.1.1/photosynthesis/R/models.R |only photosynthesis-2.1.1/photosynthesis/R/photosynthesis-package.R | 11 photosynthesis-2.1.1/photosynthesis/R/photosynthesis.R | 22 photosynthesis-2.1.1/photosynthesis/R/utils.R | 10 photosynthesis-2.1.1/photosynthesis/build/vignette.rds |binary photosynthesis-2.1.1/photosynthesis/inst/CITATION | 4 photosynthesis-2.1.1/photosynthesis/inst/doc/co2-response.html | 4 photosynthesis-2.1.1/photosynthesis/inst/doc/hydraulic-vulnerability.html | 4 photosynthesis-2.1.1/photosynthesis/inst/doc/light-respiration.R | 209 +++ photosynthesis-2.1.1/photosynthesis/inst/doc/light-respiration.Rmd | 254 ++++ photosynthesis-2.1.1/photosynthesis/inst/doc/light-respiration.html | 323 +++++ photosynthesis-2.1.1/photosynthesis/inst/doc/light-response.R | 100 + photosynthesis-2.1.1/photosynthesis/inst/doc/light-response.Rmd | 129 ++ photosynthesis-2.1.1/photosynthesis/inst/doc/light-response.html | 190 +++ photosynthesis-2.1.1/photosynthesis/inst/doc/mesophyll-conductance.html | 4 photosynthesis-2.1.1/photosynthesis/inst/doc/modeling-recommendations.html | 4 photosynthesis-2.1.1/photosynthesis/inst/doc/photosynthesis-introduction.html | 8 photosynthesis-2.1.1/photosynthesis/inst/doc/pressure-volume.html | 4 photosynthesis-2.1.1/photosynthesis/inst/doc/sensitivity-analysis.html | 4 photosynthesis-2.1.1/photosynthesis/inst/doc/stomatal-conductance.html | 4 photosynthesis-2.1.1/photosynthesis/inst/doc/temperature-response.html | 4 photosynthesis-2.1.1/photosynthesis/man/aq_response.Rd | 4 photosynthesis-2.1.1/photosynthesis/man/fit_aq_response.Rd | 21 photosynthesis-2.1.1/photosynthesis/man/fit_aq_response2.Rd |only photosynthesis-2.1.1/photosynthesis/man/fit_photosynthesis.Rd |only photosynthesis-2.1.1/photosynthesis/man/fit_r_light.Rd | 18 photosynthesis-2.1.1/photosynthesis/man/fit_r_light2.Rd |only photosynthesis-2.1.1/photosynthesis/man/models.Rd |only photosynthesis-2.1.1/photosynthesis/man/photosynthesis-package.Rd | 2 photosynthesis-2.1.1/photosynthesis/man/photosynthesis.Rd | 7 photosynthesis-2.1.1/photosynthesis/man/required_variables.Rd |only photosynthesis-2.1.1/photosynthesis/tests/testthat/test-fit_aci_response.R | 4 photosynthesis-2.1.1/photosynthesis/tests/testthat/test-fit_aq_response2.R |only photosynthesis-2.1.1/photosynthesis/tests/testthat/test-fit_r_light.R | 64 - photosynthesis-2.1.1/photosynthesis/vignettes/light-respiration.Rmd | 254 ++++ photosynthesis-2.1.1/photosynthesis/vignettes/light-response.Rmd | 129 ++ 48 files changed, 2537 insertions(+), 279 deletions(-)
More information about photosynthesis at CRAN
Permanent link
Title: Miscellaneous Functions from M. Kohl
Description: Contains several functions for statistical data analysis; e.g. for sample size and power calculations, computation of confidence intervals and tests, and generation of similarity matrices.
Author: Matthias Kohl [aut, cre]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between MKmisc versions 1.8 dated 2021-08-08 and 1.9 dated 2022-11-19
DESCRIPTION | 10 - MD5 | 18 +- NEWS | 7 build/vignette.rds |binary inst/CITATION | 2 inst/doc/MKmisc.html | 392 +++++++++++++++++++++++++------------------------ man/0MKmisc-package.Rd | 6 man/mi.t.test.Rd | 2 man/qboxplot.Rd | 4 man/qbxp.stats.Rd | 2 10 files changed, 229 insertions(+), 214 deletions(-)
Title: Descriptive Statistics, Transition Plots, and More
Description: Tools for making the descriptive "Table 1" used in medical
articles, a transition plot for showing changes between categories
(also known as a Sankey diagram), flow charts by extending the grid package,
a method for variable selection based on the SVD, Bézier lines with arrows
complementing the ones in the 'grid' package, and more.
Author: Max Gordon <max@gforge.se>
Maintainer: Max Gordon <max@gforge.se>
Diff between Gmisc versions 3.0.0 dated 2022-01-03 and 3.0.1 dated 2022-11-19
DESCRIPTION | 8 MD5 | 38 +- NAMESPACE | 1 NEWS.md | 5 R/getDescriptionStatsBy.R | 3 R/pathJoin.R | 52 ++ build/vignette.rds |binary inst/doc/Descriptives.Rmd | 2 inst/doc/Descriptives.html | 369 +++++++++++++++---- inst/doc/Grid-based_flowcharts.html | 480 ++++++++++++++++++++------ inst/doc/Transition-class.html | 365 +++++++++++++++---- inst/doc/transitionPlot.html | 384 ++++++++++++++++---- inst/examples/getSvdMostInfluential_example.R | 65 +-- man/boxPropGrob.Rd | 4 man/getSvdMostInfluential.Rd | 65 +-- man/pathJoin.Rd | 9 tests/testthat/Rplots.pdf |binary tests/testthat/test-pathJoin.R | 36 + tests/testthat/test-retrieve_and_has.R | 14 vignettes/Descriptives.Rmd | 2 20 files changed, 1461 insertions(+), 441 deletions(-)
Title: An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Description: Extends the functionality of 'ggplot2', providing the capability
to plot ternary diagrams for (subset of) the 'ggplot2' geometries. Additionally,
'ggtern' has implemented several NEW geometries which are unavailable to the
standard 'ggplot2' release. For further examples and documentation, please
proceed to the 'ggtern' website.
Author: Nicholas Hamilton [aut, cre]
Maintainer: Nicholas Hamilton <nick@ggtern.com>
Diff between ggtern versions 3.3.5 dated 2021-07-23 and 3.4.0 dated 2022-11-19
DESCRIPTION | 14 ++++---- MD5 | 72 +++++++++++++++++++++---------------------- NAMESPACE | 2 + NEWS | 5 ++ R/calc-tern-tlr2xy.R | 2 - R/coord-tern.R | 2 - R/geom-Xisoprop.R | 2 - R/geom-Xline.R | 2 - R/geom-crosshair-tern.R | 2 - R/geom-density-tern.R | 2 - R/geom-hex-tern.R | 2 + R/gg-internal.R | 2 - R/ggtern-package.R | 1 R/labels-percent.R | 2 - R/plot.R | 2 - R/stat-density-tern.R | 1 R/utilities.R | 4 +- build/partial.rdb |binary man/geom_Xisoprop.Rd | 8 ++-- man/geom_Xline.Rd | 2 - man/geom_confidence_tern.Rd | 19 +++++------ man/geom_crosshair_tern.Rd | 22 +++++++------ man/geom_density_tern.Rd | 25 +++++++------- man/geom_errorbarX.Rd | 22 +++++++------ man/geom_hex_tern.Rd | 14 ++++---- man/geom_interpolate_tern.Rd | 19 +++++------ man/geom_label_viewport.Rd | 20 +++++++---- man/geom_mean_ellipse.Rd | 19 +++++------ man/geom_point_swap.Rd | 20 +++++++---- man/geom_polygon_closed.Rd | 20 +++++++---- man/geom_smooth_tern.Rd | 19 ++++++----- man/geom_text_viewport.Rd | 20 +++++++---- man/geom_tri_tern.Rd | 14 ++++---- man/ggplot.Rd | 5 +- man/ggtern.Rd | 3 + man/scale_X_continuous.Rd | 1 man/undocumented.Rd | 8 ---- 37 files changed, 217 insertions(+), 182 deletions(-)
Title: Easy Data Wrangling and Statistical Transformations
Description: A lightweight package to assist in key steps involved in any data
analysis workflow: (1) wrangling the raw data to get it in the needed form,
(2) applying preprocessing steps and statistical transformations, and
(3) compute statistical summaries of data properties and distributions.
It is also the data wrangling backend for packages in 'easystats' ecosystem.
References: Patil et al. (2022) <doi:10.21105/joss.04684>.
Author: Indrajeet Patil [aut, cre] ,
Dominique Makowski [aut] ,
Daniel Luedecke [aut] ,
Mattan S. Ben-Shachar [aut] ,
Brenton M. Wiernik [aut] ,
Etienne Bacher [aut] ,
Remi Theriault [ctb] ,
Thomas J. Faulkenberry [rev],
Robert Garrett [rev]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between datawizard versions 0.6.3 dated 2022-10-22 and 0.6.4 dated 2022-11-19
datawizard-0.6.3/datawizard/tests/testthat/_snaps/data_reshape.md |only datawizard-0.6.3/datawizard/tests/testthat/test-data_reshape.R |only datawizard-0.6.4/datawizard/DESCRIPTION | 12 - datawizard-0.6.4/datawizard/MD5 | 108 +++++----- datawizard-0.6.4/datawizard/NAMESPACE | 13 + datawizard-0.6.4/datawizard/NEWS.md | 28 ++ datawizard-0.6.4/datawizard/R/data_arrange.R | 3 datawizard-0.6.4/datawizard/R/data_codebook.R |only datawizard-0.6.4/datawizard/R/data_duplicated.R |only datawizard-0.6.4/datawizard/R/data_match.R | 48 ++++ datawizard-0.6.4/datawizard/R/data_partition.R | 6 datawizard-0.6.4/datawizard/R/data_read.R | 13 - datawizard-0.6.4/datawizard/R/data_rescale.R | 2 datawizard-0.6.4/datawizard/R/data_restoretype.R | 5 datawizard-0.6.4/datawizard/R/data_reverse.R | 4 datawizard-0.6.4/datawizard/R/data_select.R | 2 datawizard-0.6.4/datawizard/R/data_tabulate.R | 19 + datawizard-0.6.4/datawizard/R/data_to_long.R | 26 +- datawizard-0.6.4/datawizard/R/data_to_wide.R | 49 ++-- datawizard-0.6.4/datawizard/R/data_unique.R |only datawizard-0.6.4/datawizard/R/descriptives.R | 4 datawizard-0.6.4/datawizard/R/normalize.R | 60 +++-- datawizard-0.6.4/datawizard/R/ranktransform.R | 2 datawizard-0.6.4/datawizard/R/to_numeric.R | 4 datawizard-0.6.4/datawizard/R/utils_standardize_center.R | 2 datawizard-0.6.4/datawizard/build/partial.rdb |binary datawizard-0.6.4/datawizard/build/vignette.rds |binary datawizard-0.6.4/datawizard/inst/doc/standardize_data.R | 6 datawizard-0.6.4/datawizard/inst/doc/standardize_data.Rmd | 6 datawizard-0.6.4/datawizard/inst/doc/standardize_data.html | 10 datawizard-0.6.4/datawizard/inst/doc/tidyverse_translation.html | 10 datawizard-0.6.4/datawizard/man/coef_var.Rd | 2 datawizard-0.6.4/datawizard/man/data_codebook.Rd |only datawizard-0.6.4/datawizard/man/data_duplicated.Rd |only datawizard-0.6.4/datawizard/man/data_restoretype.Rd | 4 datawizard-0.6.4/datawizard/man/data_unique.Rd |only datawizard-0.6.4/datawizard/man/normalize.Rd | 16 + datawizard-0.6.4/datawizard/tests/testthat/_snaps/data_to_long.md |only datawizard-0.6.4/datawizard/tests/testthat/_snaps/rescale_weights.md | 69 ++++++ datawizard-0.6.4/datawizard/tests/testthat/test-adjust.R | 4 datawizard-0.6.4/datawizard/tests/testthat/test-attributes-grouped-df.R |only datawizard-0.6.4/datawizard/tests/testthat/test-attributes.R |only datawizard-0.6.4/datawizard/tests/testthat/test-center.R | 13 - datawizard-0.6.4/datawizard/tests/testthat/test-coef_var.R | 26 ++ datawizard-0.6.4/datawizard/tests/testthat/test-data-rotate.R | 28 ++ datawizard-0.6.4/datawizard/tests/testthat/test-data_codebook.R |only datawizard-0.6.4/datawizard/tests/testthat/test-data_cut.R | 1 datawizard-0.6.4/datawizard/tests/testthat/test-data_duplicated.R |only datawizard-0.6.4/datawizard/tests/testthat/test-data_extract.R | 16 + datawizard-0.6.4/datawizard/tests/testthat/test-data_group.R | 10 datawizard-0.6.4/datawizard/tests/testthat/test-data_match.R | 38 +++ datawizard-0.6.4/datawizard/tests/testthat/test-data_partition.R | 54 +++++ datawizard-0.6.4/datawizard/tests/testthat/test-data_read.R | 46 ++++ datawizard-0.6.4/datawizard/tests/testthat/test-data_restoretype.R | 22 +- datawizard-0.6.4/datawizard/tests/testthat/test-data_tabulate.R | 4 datawizard-0.6.4/datawizard/tests/testthat/test-data_to_long.R |only datawizard-0.6.4/datawizard/tests/testthat/test-data_to_wide.R |only datawizard-0.6.4/datawizard/tests/testthat/test-data_unique.R |only datawizard-0.6.4/datawizard/tests/testthat/test-distributions.R | 1 datawizard-0.6.4/datawizard/tests/testthat/test-get_columns.R | 2 datawizard-0.6.4/datawizard/tests/testthat/test-normalize.R | 16 + datawizard-0.6.4/datawizard/tests/testthat/test-rescale_weights.R | 33 +++ datawizard-0.6.4/datawizard/vignettes/standardize_data.Rmd | 6 63 files changed, 679 insertions(+), 174 deletions(-)
Title: A Program for Missing Data
Description: A tool that "multiply imputes" missing data in a single cross-section
(such as a survey), from a time series (like variables collected for
each year in a country), or from a time-series-cross-sectional data
set (such as collected by years for each of several countries).
Amelia II implements our bootstrapping-based algorithm that gives
essentially the same answers as the standard IP or EMis approaches,
is usually considerably faster than existing approaches and can
handle many more variables. Unlike Amelia I and other statistically
rigorous imputation software, it virtually never crashes (but please
let us know if you find to the contrary!). The program also
generalizes existing approaches by allowing for trends in time series
across observations within a cross-sectional unit, as well as priors
that allow experts to incorporate beliefs they have about the values
of missing cells in their data. Amelia II also includes useful
diagnostics of the fit of multiple imputation models. The p [...truncated...]
Author: James Honaker [aut],
Gary King [aut],
Matthew Blackwell [aut, cre]
Maintainer: Matthew Blackwell <mblackwell@gov.harvard.edu>
Diff between Amelia versions 1.8.0 dated 2021-05-26 and 1.8.1 dated 2022-11-19
DESCRIPTION | 14 MD5 | 57 +- NAMESPACE | 5 R/combine.R |only R/diag.r | 4 R/emb.r | 41 + R/missmap.R | 4 R/mo.R | 8 R/prep.r | 72 +-- R/with.R |only build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 2 inst/doc/ameliaview.html | 479 +++++++++++++++++++-- inst/doc/diagnostics.html | 457 ++++++++++++++++++-- inst/doc/intro-mi.html | 381 +++++++++++++++-- inst/doc/using-amelia.R | 51 -- inst/doc/using-amelia.Rmd | 59 -- inst/doc/using-amelia.html | 1001 +++++++++++++++++++++++++++++++++++++++------ man/amelia.Rd | 54 +- man/compare.density.Rd | 16 man/disperse.Rd | 12 man/mi.combine.Rd |only man/missmap.Rd | 22 man/moPrep.Rd | 33 - man/overimpute.Rd | 14 man/plot.amelia.Rd | 3 man/tscsPlot.Rd | 24 - man/with.amelia.Rd |only man/write.amelia.Rd | 12 src/em.cpp | 2 vignettes/using-amelia.Rmd | 59 -- 32 files changed, 2367 insertions(+), 519 deletions(-)
Title: Additive Isotonic Proportional Hazards Model
Description: Nonparametric estimation of additive isotonic covariate effects for proportional hazards model.
Author: Yunro Chung [aut, cre]
Maintainer: Yunro Chung <yunro.chung@asu.edu>
Diff between aisoph versions 0.1 dated 2022-11-04 and 0.2 dated 2022-11-19
DESCRIPTION | 8 - MD5 | 16 +- NAMESPACE | 1 R/aisoph.R | 57 ++----- R/aisoph.ti.R | 392 +++++++++++++++++++++++++------------------------- R/plot.aisoph.R | 74 ++++----- R/print.aisoph.R | 51 ++---- man/aisoph-package.Rd | 44 ++--- man/aisoph.Rd | 186 +++++++++++------------ 9 files changed, 406 insertions(+), 423 deletions(-)
Title: Automated Generation of Data-Informed GLM Models in Task-Based
fMRI Data Analysis
Description: Analysis of task-related functional magnetic resonance imaging (fMRI) activity at the level of individual participants is commonly based on general linear modelling (GLM) that allows us to estimate to what extent the blood oxygenation level dependent (BOLD) signal can be explained by task response predictors specified in the GLM model. The predictors are constructed by convolving the hypothesised timecourse of neural activity with an assumed hemodynamic response function (HRF). To get valid and precise estimates of task response, it is important to construct a model of neural activity that best matches actual neuronal activity. The construction of models is most often driven by predefined assumptions on the components of brain activity and their duration based on the task design and specific aims of the study. However, our assumptions about the onset and duration of component processes might be wrong and can also differ across brain regions. This can result in inappropriate or suboptim [...truncated...]
Author: Jure Demsar [cre, aut],
Nina Purg [aut],
Grega Repovs [aut]
Maintainer: Jure Demsar <jure.demsar@fri.uni-lj.si>
Diff between autohrf versions 1.0.4 dated 2022-09-30 and 1.1.0 dated 2022-11-19
DESCRIPTION | 8 +- MD5 | 58 ++++++++------ NEWS.md | 4 + R/data.R | 49 +++++++++++- R/modelling.R | 10 +- build/vignette.rds |binary data/flanker.rda |only data/flanker_autofit.rda |only data/swm.rda |binary data/swm_autofit.rda |binary data/swm_autofit1.rda |only data/swm_autofit2.rda |only inst/doc/automated_search.R | 32 +++++--- inst/doc/automated_search.Rmd | 51 +++++++----- inst/doc/automated_search.html | 125 +++++++++++++++++-------------- inst/doc/flanker_analysis.R |only inst/doc/flanker_analysis.Rmd |only inst/doc/flanker_analysis.html |only inst/doc/manual_evaluation.R | 48 +++++------- inst/doc/manual_evaluation.Rmd | 67 ++++++++-------- inst/doc/manual_evaluation.html | 158 +++++++++++++++++++--------------------- inst/doc/swm_analysis.R |only inst/doc/swm_analysis.Rmd |only inst/doc/swm_analysis.html |only man/autohrf-datasets.Rd | 51 ++++++++++++ man/autohrf.Rd | 2 man/evaluate_model.Rd | 4 - man/get_best_models.Rd | 2 man/plot_best_models.Rd | 2 man/plot_fitness.Rd | 2 tests/testthat/test_events.R | 4 - tests/testthat/test_modelling.R | 20 ++--- vignettes/automated_search.Rmd | 51 +++++++----- vignettes/flanker_analysis.Rmd |only vignettes/manual_evaluation.Rmd | 67 ++++++++-------- vignettes/swm_analysis.Rmd |only 36 files changed, 473 insertions(+), 342 deletions(-)
Title: Easily Install and Load the 'mlr3' Package Family
Description: The 'mlr3' package family is a set of packages for
machine-learning purposes built in a modular fashion. This wrapper
package is aimed to simplify the installation and loading of the core
'mlr3' packages. Get more information about the 'mlr3' project at
<https://mlr3book.mlr-org.com/>.
Author: Michel Lang [cre, aut] ,
Patrick Schratz [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3verse versions 0.2.6 dated 2022-11-03 and 0.2.7 dated 2022-11-19
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 2 ++ NEWS.md | 4 ++++ R/reexports_mlr3fselect.R | 6 ++++++ man/reexports.Rd | 5 +++-- 6 files changed, 26 insertions(+), 13 deletions(-)
Title: Mixed Variable Optimization
Description: Mixed variable optimization for non-linear functions.
Can optimize function whose inputs are a combination of continuous,
ordered, and unordered variables.
Author: Collin Erickson
Maintainer: Collin Erickson <collinberickson@gmail.com>
Diff between mixopt versions 0.1.0 dated 2022-11-11 and 0.1.1 dated 2022-11-19
DESCRIPTION | 10 ++++++---- MD5 | 23 ++++++++++++----------- NEWS.md | 6 ++++++ R/full_index_line_search_function.R | 4 ++-- R/index_line_search_function.R | 19 +++++++++++++++++++ R/mixopt_coorddesc.R | 21 ++++++++++++++++++++- R/mixopt_multistart.R | 21 ++++++++++++++++++--- R/par.R | 24 +----------------------- man/mixopt.Rd | 10 ++++++++++ tests/testthat/Rplots.pdf |binary tests/testthat/test-index_line_search.R |only tests/testthat/test-par.R | 23 +++++++++++++++++++---- tests/testthat/test_coorddesc.R | 28 ++++++++++++++++++++++++++++ 13 files changed, 141 insertions(+), 48 deletions(-)
Title: Occurrence Filtering, Geographic Standardization and Generation
of Species Range Polygons
Description: Provides tools for filtering occurrence records, generating alpha-hull-derived range polygons and mapping species distributions.
Author: Pascal Title [aut, cre]
Maintainer: Pascal Title <ptitle@umich.edu>
Diff between rangeBuilder versions 1.6 dated 2022-06-20 and 2.0 dated 2022-11-19
rangeBuilder-1.6/rangeBuilder/R/ah2sp.R |only rangeBuilder-1.6/rangeBuilder/R/downloadDates.R |only rangeBuilder-1.6/rangeBuilder/R/getAcceptedFromSynonym.R |only rangeBuilder-1.6/rangeBuilder/R/getAcceptedNames.R |only rangeBuilder-1.6/rangeBuilder/R/getAllCountries.R |only rangeBuilder-1.6/rangeBuilder/R/getCountryFromSpecies.R |only rangeBuilder-1.6/rangeBuilder/R/getSpCoordRange.R |only rangeBuilder-1.6/rangeBuilder/R/getSpFromCountry.R |only rangeBuilder-1.6/rangeBuilder/R/getSynonymsFromAccepted.R |only rangeBuilder-1.6/rangeBuilder/R/queryGISD.R |only rangeBuilder-1.6/rangeBuilder/R/synonymMatch.R |only rangeBuilder-1.6/rangeBuilder/R/trim.R |only rangeBuilder-1.6/rangeBuilder/data/gshhs.rda |only rangeBuilder-1.6/rangeBuilder/man/downloadDates.Rd |only rangeBuilder-1.6/rangeBuilder/man/getAcceptedFromSynonym.Rd |only rangeBuilder-1.6/rangeBuilder/man/getAcceptedNames.Rd |only rangeBuilder-1.6/rangeBuilder/man/getAllCountries.Rd |only rangeBuilder-1.6/rangeBuilder/man/getCountryFromSpecies.Rd |only rangeBuilder-1.6/rangeBuilder/man/getSpFromCountry.Rd |only rangeBuilder-1.6/rangeBuilder/man/getSynonymsFromAccepted.Rd |only rangeBuilder-1.6/rangeBuilder/man/queryGISD.Rd |only rangeBuilder-1.6/rangeBuilder/man/synonymMatch.Rd |only rangeBuilder-2.0/rangeBuilder/ChangeLog |only rangeBuilder-2.0/rangeBuilder/DESCRIPTION | 18 rangeBuilder-2.0/rangeBuilder/MD5 | 74 -- rangeBuilder-2.0/rangeBuilder/NAMESPACE | 14 rangeBuilder-2.0/rangeBuilder/R/addRasterLegend.R | 312 ----------- rangeBuilder-2.0/rangeBuilder/R/ah2sf.R |only rangeBuilder-2.0/rangeBuilder/R/closestCountry.R | 67 +- rangeBuilder-2.0/rangeBuilder/R/coordError.R | 117 ++-- rangeBuilder-2.0/rangeBuilder/R/exampleData.R | 9 rangeBuilder-2.0/rangeBuilder/R/filterByLand.R | 72 +- rangeBuilder-2.0/rangeBuilder/R/filterByProximity.R | 60 +- rangeBuilder-2.0/rangeBuilder/R/flipSign.R | 23 rangeBuilder-2.0/rangeBuilder/R/getDynamicAlphaHull.R | 247 +++----- rangeBuilder-2.0/rangeBuilder/R/getExtentOfList.R | 53 + rangeBuilder-2.0/rangeBuilder/R/rangeBuilder-package.R | 9 rangeBuilder-2.0/rangeBuilder/R/rasterStackFromPolyList.R | 105 ++- rangeBuilder-2.0/rangeBuilder/R/standardizeCountry.R | 6 rangeBuilder-2.0/rangeBuilder/R/sysdata.rda |binary rangeBuilder-2.0/rangeBuilder/man/addRasterLegend.Rd | 12 rangeBuilder-2.0/rangeBuilder/man/closestCountry.Rd | 19 rangeBuilder-2.0/rangeBuilder/man/filterByLand.Rd | 20 rangeBuilder-2.0/rangeBuilder/man/filterByProximity.Rd | 25 rangeBuilder-2.0/rangeBuilder/man/flipSign.Rd | 4 rangeBuilder-2.0/rangeBuilder/man/getDynamicAlphaHull.Rd | 16 rangeBuilder-2.0/rangeBuilder/man/getExtentOfList.Rd | 11 rangeBuilder-2.0/rangeBuilder/man/rangeBuilder-example.Rd | 9 rangeBuilder-2.0/rangeBuilder/man/rangeBuilder.Rd | 5 rangeBuilder-2.0/rangeBuilder/man/rasterStackFromPolyList.Rd | 34 - 50 files changed, 501 insertions(+), 840 deletions(-)
Title: Structurally Guided Sampling
Description: Structurally guided sampling (SGS) approaches for airborne laser scanning (ALS; LIDAR). Primary functions provide means
to generate data-driven stratifications & methods for allocating samples. Intermediate functions for calculating and extracting important information
about input covariates and samples are also included. Processing outcomes are intended to help forest and environmental management
practitioners better optimize field sample placement as well as assess and augment existing sample networks in the context of data
distributions and conditions. ALS data is the primary intended use case, however any rasterized remote sensing data can be used,
enabling data-driven stratifications and sampling approaches.
Author: Tristan RH Goodbody [aut, cre, cph]
,
Nicholas C Coops [aut] ,
Martin Queinnec [aut]
Maintainer: Tristan RH Goodbody <goodbody.t@gmail.com>
Diff between sgsR versions 1.3.1 dated 2022-10-14 and 1.3.2 dated 2022-11-19
DESCRIPTION | 6 MD5 | 44 +- NEWS.md | 32 +- R/calculate_allocation.R | 4 R/sample_ahels.R | 2 R/sample_existing.R | 2 R/sample_systematic.R | 245 ++++++++-------- R/strat_map.R | 101 ------ build/vignette.rds |binary inst/doc/calculating.html | 30 +- inst/doc/sampling.html | 458 +++++++++++++++---------------- inst/doc/sgsR.html | 8 inst/doc/stratification.html | 19 - inst/extdata/access.dbf |binary man/calculate_allocation.Rd | 4 man/sample_systematic.Rd | 2 man/strat_map.Rd | 2 tests/testthat/setup-testthat.R | 2 tests/testthat/test-calculate_sampsize.R | 1 tests/testthat/test-sample_existing.R | 9 tests/testthat/test-sample_nc.R | 7 tests/testthat/test-sample_systematic.R | 12 tests/testthat/test-strat_map.R | 8 23 files changed, 473 insertions(+), 525 deletions(-)
Title: Multivariate Imputation by Chained Equations
Description: Multiple imputation using Fully Conditional Specification (FCS)
implemented by the MICE algorithm as described in Van Buuren and
Groothuis-Oudshoorn (2011) <doi:10.18637/jss.v045.i03>. Each variable has
its own imputation model. Built-in imputation models are provided for
continuous data (predictive mean matching, normal), binary data (logistic
regression), unordered categorical data (polytomous logistic regression)
and ordered categorical data (proportional odds). MICE can also impute
continuous two-level data (normal model, pan, second-level variables).
Passive imputation can be used to maintain consistency between variables.
Various diagnostic plots are available to inspect the quality of the
imputations.
Author: Stef van Buuren [aut, cre],
Karin Groothuis-Oudshoorn [aut],
Gerko Vink [ctb],
Rianne Schouten [ctb],
Alexander Robitzsch [ctb],
Patrick Rockenschaub [ctb],
Lisa Doove [ctb],
Shahab Jolani [ctb],
Margarita Moreno-Betancur [ctb],
Ian White [ctb],
Phil [...truncated...]
Maintainer: Stef van Buuren <stef.vanbuuren@tno.nl>
Diff between mice versions 3.14.0 dated 2021-11-24 and 3.15.0 dated 2022-11-19
DESCRIPTION | 28 +-- MD5 | 184 ++++++++++---------- NAMESPACE | 5 NEWS.md | 43 ++++ R/D1.R | 6 R/D2.R | 6 R/D3.R | 5 R/ampute.R | 52 +++-- R/ampute.continuous.R | 26 +- R/ampute.discrete.R | 4 R/blocks.R | 9 R/cbind.R | 11 - R/complete.R | 6 R/convergence.R |only R/edit.setup.R | 4 R/fdgs.R | 2 R/futuremice.R |only R/ibind.R | 2 R/imports.R | 1 R/internal.R | 1 R/mcar.R | 235 ++++++++++++++------------ R/mice.R | 43 +++- R/mice.impute.2l.bin.R | 11 - R/mice.impute.2l.lmer.R | 23 +- R/mice.impute.2l.norm.R | 2 R/mice.impute.cart.R | 2 R/mice.impute.logreg.R | 2 R/mice.impute.mnar.logreg.R | 1 R/mice.impute.mnar.norm.R | 1 R/mice.impute.mpmm.R |only R/mice.impute.pmm.R | 30 ++- R/mice.impute.polr.R | 13 - R/mice.impute.quadratic.R | 68 ++++--- R/mice.impute.rf.R | 6 R/mice.mids.R | 11 - R/mids.R | 2 R/mipo.R | 2 R/parlmice.R | 6 R/parse.ums.R | 6 R/pool.R | 41 +++- R/pool.compare.R | 2 R/pool.scalar.R | 12 - R/predictorMatrix.R | 22 +- R/rbind.R | 7 R/sampler.R | 3 R/summary.R | 12 - R/tidiers.R | 4 R/visitSequence.R | 3 R/where.R | 9 README.md |only build/partial.rdb |binary man/D1.Rd | 5 man/D2.Rd | 5 man/as.mids.Rd | 6 man/convergence.Rd |only man/fdgs.Rd | 2 man/futuremice.Rd |only man/make.method.Rd | 6 man/make.where.Rd | 9 man/mice.Rd | 32 +++ man/mice.impute.cart.Rd | 3 man/mice.impute.lasso.logreg.Rd | 1 man/mice.impute.lasso.norm.Rd | 1 man/mice.impute.lasso.select.logreg.Rd | 1 man/mice.impute.lasso.select.norm.Rd | 1 man/mice.impute.lda.Rd | 1 man/mice.impute.logreg.Rd | 1 man/mice.impute.logreg.boot.Rd | 1 man/mice.impute.mean.Rd | 1 man/mice.impute.midastouch.Rd | 1 man/mice.impute.mnar.Rd | 1 man/mice.impute.mpmm.Rd |only man/mice.impute.norm.Rd | 1 man/mice.impute.norm.boot.Rd | 1 man/mice.impute.norm.nob.Rd | 1 man/mice.impute.norm.predict.Rd | 1 man/mice.impute.pmm.Rd | 17 + man/mice.impute.polr.Rd | 1 man/mice.impute.polyreg.Rd | 1 man/mice.impute.quadratic.Rd | 5 man/mice.impute.rf.Rd | 3 man/mice.impute.ri.Rd | 1 man/mids-class.Rd | 2 man/nimp.Rd | 6 man/parlmice.Rd | 5 man/pmm.match.Rd | 2 man/pool.Rd | 22 ++ man/pool.scalar.Rd | 6 tests/testthat/test-ampute.R | 151 +++++++++++++++- tests/testthat/test-mice.R | 18 - tests/testthat/test-mice.impute.durr.logreg.R | 2 tests/testthat/test-mice.impute.pmm.R | 10 + tests/testthat/test-mice.impute.rf.R |only tests/testthat/test-newdata.R | 21 +- tests/testthat/test-parlmice.R | 6 tests/testthat/test-pool.R | 11 - tests/testthat/test-tidiers.R | 14 - 97 files changed, 881 insertions(+), 479 deletions(-)
Title: A Portal for Global Governance Data
Description: This is the core package for the many packages universe.
It includes functions to help researchers work with and contribute to
event datasets on global governance.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Bernhard Bieri [ctb] ,
Esther Peev [ctb] ,
Jael Tan [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manydata versions 0.8.1 dated 2022-11-11 and 0.8.2 dated 2022-11-19
DESCRIPTION | 8 - MD5 | 32 ++--- NAMESPACE | 6 - NEWS.md | 8 + R/consolidate.R | 71 +++++------- R/db_profile.R | 229 +++++++++++++++++++---------------------- R/package_get.R | 4 R/releases_plot.R | 5 R/treaties_retrieve.R | 69 ++++++++---- inst/doc/user.R | 6 - inst/doc/user.Rmd | 6 - inst/doc/user.html | 160 +++++++++++++--------------- man/get_packages.Rd | 5 man/plot_releases.Rd | 5 man/retrieve_treaty.Rd | 41 ++++--- tests/testthat/test_retrieve.R | 8 + vignettes/user.Rmd | 6 - 17 files changed, 351 insertions(+), 318 deletions(-)
Title: Cluster Ensembles
Description: CLUster Ensembles.
Author: Kurt Hornik [aut, cre] ,
Walter Boehm [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between clue versions 0.3-62 dated 2022-10-18 and 0.3-63 dated 2022-11-19
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ R/dissimilarity.R | 5 +++-- build/partial.rdb |binary build/vignette.rds |binary data/CKME.rda |binary data/Cassini.rda |binary data/GVME.rda |binary data/GVME_Consensus.rda |binary data/Kinship82.rda |binary data/Kinship82_Consensus.rda |binary data/Phonemes.rda |binary inst/doc/clue.pdf |binary 13 files changed, 18 insertions(+), 17 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-08 0.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-05 2.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-22 1.1.1.992
2022-08-12 1.1.1
2022-08-06 1.1.0
2021-10-24 1.0.2
2021-08-01 1.0.1
2021-07-26 1.0.0.1
2021-07-16 1.0.0
2021-06-06 0.2.5
2020-06-09 0.2.4
2020-02-22 0.2.3
2020-01-07 0.2.2
2019-09-23 0.2.0
2019-09-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-16 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-19 2.1.0
2022-01-17 2.0.2