Title: The Corset Plot
Description: Corset plots are a visualization technique used strictly to visualize repeat measures
at 2 time points (such as pre- and post- data). The distribution of measurements are visualized at
each time point, whilst the trajectories of individual change are visualized by connecting the pre-
and post- values linearly. These lines can be coloured to represent the magnitude of change, or
other user-defined value. This method of visualization is ideal for showing the heterogeneity of
data, including differences by sub-groups. The package relies on 'ggplot2' allowing for easy
integration so that users can customize their visualizations as required. Users can create corset
plots using data in either wide or long format using the functions gg_corset() or gg_corset_elongated(), respectively.
Author: Kyla Belisario
Maintainer: Kyla Belisario <kyla_belisario@protonmail.com>
Diff between ggcorset versions 0.3.0 dated 2022-06-27 and 0.4.0 dated 2022-12-10
DESCRIPTION | 8 - MD5 | 20 ++-- R/gg_corset.R | 195 +++++++++++++++++++++++++++++++-------- R/gg_corset_elongated.R | 166 ++++++++++++++++++++++++++++----- build/vignette.rds |binary inst/doc/corset_plot_intro.R | 26 ++++- inst/doc/corset_plot_intro.Rmd | 35 +++++-- inst/doc/corset_plot_intro.html | 196 ++++++++++++++++++++++------------------ man/gg_corset.Rd | 8 + man/gg_corset_elongated.Rd | 8 + vignettes/corset_plot_intro.Rmd | 35 +++++-- 11 files changed, 503 insertions(+), 194 deletions(-)
Title: Display Information About Nested Subsets of a Data Frame
Description: A tool for calculating and drawing "variable trees". Variable trees display information about nested subsets of a data frame.
Author: Nick Barrowman [aut, cre],
Sebastian Gatscha [aut],
Franco Momoli [cph]
Maintainer: Nick Barrowman <nbarrowman@cheo.on.ca>
Diff between vtree versions 5.6.4 dated 2022-11-23 and 5.6.5 dated 2022-12-10
vtree-5.6.4/vtree/vignettes/output.txt |only vtree-5.6.5/vtree/DESCRIPTION | 6 vtree-5.6.5/vtree/MD5 | 15 +- vtree-5.6.5/vtree/NEWS.md | 10 + vtree-5.6.5/vtree/inst/doc/vtree.R | 6 vtree-5.6.5/vtree/inst/doc/vtree.Rmd | 6 vtree-5.6.5/vtree/inst/doc/vtree.html | 12 + vtree-5.6.5/vtree/tests/testthat/test-vtree.R | 165 +++----------------------- vtree-5.6.5/vtree/vignettes/vtree.Rmd | 6 9 files changed, 68 insertions(+), 158 deletions(-)
Title: Measurement Units for R Vectors
Description: Support for measurement units in R vectors, matrices
and arrays: automatic propagation, conversion, derivation
and simplification of units; raising errors in case of unit
incompatibility. Compatible with the POSIXct, Date and difftime
classes. Uses the UNIDATA udunits library and unit database for
unit compatibility checking and conversion.
Documentation about 'units' is provided in the paper by Pebesma, Mailund &
Hiebert (2016, <doi:10.32614/RJ-2016-061>), included in this package as a
vignette; see 'citation("units")' for details.
Author: Edzer Pebesma [aut, cre] ,
Thomas Mailund [aut],
Tomasz Kalinowski [aut],
James Hiebert [ctb],
Inaki Ucar [aut] ,
Thomas Lin Pedersen [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between units versions 0.8-0 dated 2022-02-04 and 0.8-1 dated 2022-12-10
DESCRIPTION | 12 MD5 | 40 NEWS.md | 8 R/arith.R | 26 R/scale_units.R | 29 build/vignette.rds |binary configure | 3110 ++++++++++++++++++--------------- inst/doc/measurement_units_in_R.Rmd | 6 inst/doc/measurement_units_in_R.html | 514 ++++- inst/doc/units.html | 247 +- inst/share/udunits/udunits2-common.xml | 18 man/Ops.units.Rd | 2 man/hist.units.Rd | 3 man/install_unit.Rd | 3 man/scale_units.Rd | 11 src/Makevars.ucrt | 12 src/Makevars.win | 8 src/udunits.cpp | 2 tests/testthat/test_arith.R | 39 tools/winlibs.R | 4 vignettes/measurement_units_in_R.Rmd | 6 21 files changed, 2439 insertions(+), 1661 deletions(-)
Title: Non-Ordered Vectors
Description: Functionality for manipulating values of associative
maps. Ordinary R vectors are unsuitable for working with values of
associative maps because elements of an R vector may be accessed by
reference to their location in the vector, but associative maps are
stored in arbitrary order. However, when associating keys with
values one needs both parts to be in 1-1 correspondence, so one
cannot dispense with the order entirely. The 'disordR' package
includes a single S4 class, disord. This class allows one to
perform only those operations appropriate for manipulating values of
associative maps and prevents any other operation (such as accessing
an element at a particular location). A useful heuristic is that
one is only allowed to access or modify a disord object using a
python list comprehension. The idea is to prevent ill-defined
operations on values (or keys) of associative maps, whose order is
undefined or at best implementation-specific, while allowing and
facilitating sensible oper [...truncated...]
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between disordR versions 0.0-9-2 dated 2022-09-20 and 0.0-9-4 dated 2022-12-10
DESCRIPTION | 10 + MD5 | 25 ++-- NAMESPACE | 1 NEWS.md | 9 + R/disordR.R | 6 - build/vignette.rds |binary inst/CITATION |only inst/disordR_arxiv.tex |only inst/doc/disordR.Rmd | 23 ++-- inst/doc/disordR.html | 228 +++++++++++++++++++++++++++++++++++++++++--- man/consistent.Rd | 2 man/misc.Rd | 7 + tests/testthat/test_aaa.R | 12 ++ vignettes/disordR.Rmd | 23 ++-- vignettes/disordR_arxiv.bib |only 15 files changed, 290 insertions(+), 56 deletions(-)
Title: Semiparametric Bivariate Correlated Frailty Models Fit
Description: Fit and simulate a semiparametric bivariate correlated frailty models with proportional
hazard structure. Frailty distributions, such as gamma and lognormal models are
supported. Bivariate gamma fit is obtained using the approach given in Iachine (1995) and
lognormal fit is based on the approach by
Ripatti and Palmgren (2000) <doi:10.1111/j.0006-341X.2000.01016.x>.
Author: Mesfin Tsegaye [aut, cre],
Yehenew Kifle [aut, ctb]
Maintainer: Mesfin Tsegaye <mesfin.tsegaye@ddu.edu.et>
Diff between bcfrailph versions 0.1.0 dated 2020-06-16 and 0.1.1 dated 2022-12-10
DESCRIPTION | 29 MD5 | 40 NAMESPACE | 15 R/bcfrailph.R | 305 ++----- R/bcfrailph.control.R | 97 -- R/fitbccv.gammasp.R |only R/fitbccv.lognsp.R |only R/plot.bcfrailph.R |only R/print.bcfrailph.R | 26 R/print.shrgamsp.R |only R/shrgamsp.R |only R/simbcfrailph.R | 271 ++++-- R/simstdybcf.R |only R/summary.bcfrailph.R | 28 R/summary.shrgamsp.R |only R/utilities.R | 2030 ++++++++++++++++++++++++++++++++++------------- man/bcfrailph.Rd | 400 +++------ man/bcfrailph.control.Rd | 162 +-- man/fitbccv.gammasp.Rd |only man/fitbccv.lognsp.Rd |only man/plot.bcfrailph.Rd |only man/print.bcfrailph.Rd | 80 - man/print.shrgamsp.Rd |only man/shrgamsp.Rd |only man/simbcfrailph.Rd | 222 ++--- man/simstdybcf.Rd |only man/summary.bcfrailph.Rd | 82 - man/summary.shrgamsp.Rd |only 28 files changed, 2233 insertions(+), 1554 deletions(-)
Title: An Implementation of the 'Congruent Matching Cells' Method
Description: An open-source implementation of the 'Congruent Matching Cells'
method for cartridge case identification as proposed by Song (2013) <https://tsapps.nist.gov/publication/get_pdf.cfm?pub_id=911193> as well
as an extension of the method proposed by Tong et al. (2015) <doi:10.6028/jres.120.008>.
Provides a wide range of pre, inter, and post-processing options when
working with cartridge case scan data and their associated comparisons. See
the cmcR package website for more details and examples.
Author: Joe Zemmels [aut, cre],
Heike Hofmann [aut],
Susan VanderPlas [aut]
Maintainer: Joe Zemmels <jzemmels@iastate.edu>
Diff between cmcR versions 0.1.9 dated 2022-02-22 and 0.1.11 dated 2022-12-10
DESCRIPTION | 16 MD5 | 70 +- NAMESPACE | 6 R/ccfComputation.R | 106 +-- R/comparison.R | 836 +++++++++++++++++++++++--- R/decision.R | 95 ++- R/diagnosticTools.R | 932 ++++++++++++++---------------- R/preProcess.R | 685 ++++++++++++++++++---- README.md | 651 +++++++++++--------- build/vignette.rds |binary inst/doc/cmcR_plotReproduction.html | 305 ++------- inst/doc/decisionRuleDescription.html | 587 +++++++++++++++--- man/cmcPlot.Rd | 115 --- man/comparison_alignedTargetCell.Rd |only man/comparison_allTogether.Rd | 20 man/comparison_calcPropMissing.Rd | 56 - man/comparison_cellDivision.Rd | 56 - man/comparison_cor.Rd | 130 ++-- man/comparison_fft_ccf.Rd | 2 man/comparison_getTargetRegions.Rd | 14 man/comparison_replaceMissing.Rd | 92 +- man/comparison_standardizeHeights.Rd | 2 man/fadulData_processed.Rd | 100 +-- man/figures/README-unnamed-chunk-12-1.png |binary man/figures/README-unnamed-chunk-13-1.png |binary man/figures/README-unnamed-chunk-18-1.png |binary man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/pipe.Rd | 24 man/preProcess_crop.Rd | 48 - man/preProcess_erode.Rd |only man/x3pListPlot.Rd | 16 tests/testthat/setup.R | 43 + tests/testthat/test-comparison.R | 33 - tests/testthat/test-decision.R | 44 - tests/testthat/test-diagnosticTools.R | 86 +- tests/testthat/test-preProcess.R | 136 ++-- 37 files changed, 3374 insertions(+), 1932 deletions(-)
Title: Miscellaneous Useful Functions Including LaTeX Tables, Kalman
Filtering and Development Tools
Description: Implementing various things including functions for LaTeX tables,
the Kalman filter, web scraping, development tools, relative risk and odds
ratio.
Author: Benjamin M. Taylor
Maintainer: Benjamin M. Taylor <benjamin.taylor.software@gmail.com>
Diff between miscFuncs versions 1.5-2 dated 2021-06-10 and 1.5-3 dated 2022-12-10
DESCRIPTION | 10 +++++----- MD5 | 21 +++++++++++++++++---- NAMESPACE | 12 ++++++++++++ R/genHarmonic.R |only build/vignette.rds |binary inst/doc/miscFuncs.pdf |binary man/cospulse.Rd |only man/cosrsaw.Rd |only man/cossaw.Rd |only man/costri.Rd |only man/daynames.Rd |only man/genIntegratedharmonic.Rd |only man/genharmonic.Rd |only man/monthnames.Rd |only man/sinpulse.Rd |only man/sinrsaw.Rd |only man/sinsaw.Rd |only man/sintri.Rd |only 18 files changed, 34 insertions(+), 9 deletions(-)
Title: Maximum Likelihood Estimation for Probability Functions from
Data Sets
Description: Total Time on Test plot and routines for parameter estimation of
any lifetime distribution implemented in R via maximum likelihood (ML) given
a data set. It is implemented thinking on parametric survival analysis, but
it feasible to use in parameter estimation of probability density or mass
functions in any field. The main routines 'maxlogL' and 'maxlogLreg' are
wrapper functions specifically developed for ML estimation. There are
included optimization procedures such as 'nlminb' and 'optim' from base
package, and 'DEoptim' Mullen (2011) <doi: 10.18637/jss.v040.i06>. Standard
errors are estimated with 'numDeriv' Gilbert (2011)
<https://CRAN.R-project.org/package=numDeriv> or the option 'Hessian = TRUE'
of 'optim' function.
Author: Jaime Mosquera [aut, cre] ,
Freddy Hernandez [ctb]
Maintainer: Jaime Mosquera <jmosquerag@unal.edu.co>
Diff between EstimationTools versions 2.1.0 dated 2021-03-10 and 4.0.0 dated 2022-12-10
EstimationTools-2.1.0/EstimationTools/R/data.R |only EstimationTools-2.1.0/EstimationTools/inst/doc/maxlogL.R |only EstimationTools-2.1.0/EstimationTools/inst/doc/maxlogL.Rnw |only EstimationTools-2.1.0/EstimationTools/inst/doc/maxlogL.pdf |only EstimationTools-2.1.0/EstimationTools/man/figure |only EstimationTools-2.1.0/EstimationTools/tests/testthat/_snaps/Hazard_Shape.md |only EstimationTools-2.1.0/EstimationTools/vignettes/article-EEBa.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-EEBb.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-EEBc.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-PLexample_a.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-PLexample_b.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-RetentionPlot.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-ZIPa.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-ZIPb.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-norm_a.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-norm_b.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-varEEBa.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-varEEBb.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-varEEBc.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-varZIPa.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-varZIPb.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-varnorm_a.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-varnorm_b.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/article-visualization.pdf |only EstimationTools-2.1.0/EstimationTools/vignettes/maxlogL.Rnw |only EstimationTools-2.1.0/EstimationTools/vignettes/refs.bib |only EstimationTools-4.0.0/EstimationTools/DESCRIPTION | 36 EstimationTools-4.0.0/EstimationTools/MD5 | 181 ++- EstimationTools-4.0.0/EstimationTools/NAMESPACE | 21 EstimationTools-4.0.0/EstimationTools/NEWS.md | 50 - EstimationTools-4.0.0/EstimationTools/R/Cells-data.R |only EstimationTools-4.0.0/EstimationTools/R/Fibers-data.R |only EstimationTools-4.0.0/EstimationTools/R/Hazard_Shape.R | 10 EstimationTools-4.0.0/EstimationTools/R/LinkFunc.R | 27 EstimationTools-4.0.0/EstimationTools/R/TTTE_Analytical.R | 8 EstimationTools-4.0.0/EstimationTools/R/TTT_hazard_shape.R | 171 +++ EstimationTools-4.0.0/EstimationTools/R/bootstrap_maxlogL.R | 13 EstimationTools-4.0.0/EstimationTools/R/coef.maxlogL.R |only EstimationTools-4.0.0/EstimationTools/R/gauss_quad.R |only EstimationTools-4.0.0/EstimationTools/R/globals.R | 2 EstimationTools-4.0.0/EstimationTools/R/hazard_fun.R |only EstimationTools-4.0.0/EstimationTools/R/inherit_methods.R | 2 EstimationTools-4.0.0/EstimationTools/R/integration.R |only EstimationTools-4.0.0/EstimationTools/R/internal.R | 60 + EstimationTools-4.0.0/EstimationTools/R/interp.options.R | 2 EstimationTools-4.0.0/EstimationTools/R/key_functions.R |only EstimationTools-4.0.0/EstimationTools/R/legend.HazardShape.R |only EstimationTools-4.0.0/EstimationTools/R/loess.options.R | 2 EstimationTools-4.0.0/EstimationTools/R/maxlogL.R | 198 ++-- EstimationTools-4.0.0/EstimationTools/R/maxlogLreg.R | 183 ++- EstimationTools-4.0.0/EstimationTools/R/plot.HazardShape.R | 297 ++++-- EstimationTools-4.0.0/EstimationTools/R/plot.empiricalTTT.R | 7 EstimationTools-4.0.0/EstimationTools/R/predict.maxlogL.R | 58 - EstimationTools-4.0.0/EstimationTools/R/print.HazardShape.R |only EstimationTools-4.0.0/EstimationTools/R/residuals.R |only EstimationTools-4.0.0/EstimationTools/R/summary.maxlogL.R | 29 EstimationTools-4.0.0/EstimationTools/R/summate.R |only EstimationTools-4.0.0/EstimationTools/R/zzz.R | 2 EstimationTools-4.0.0/EstimationTools/README.md | 29 EstimationTools-4.0.0/EstimationTools/build/partial.rdb |binary EstimationTools-4.0.0/EstimationTools/build/vignette.rds |binary EstimationTools-4.0.0/EstimationTools/data/reduction_cells.rda |only EstimationTools-4.0.0/EstimationTools/inst/REFERENCES.bib | 34 EstimationTools-4.0.0/EstimationTools/inst/doc/Bootstrap_implementation.Rmd | 10 EstimationTools-4.0.0/EstimationTools/inst/doc/Bootstrap_implementation.html | 475 +++++++--- EstimationTools-4.0.0/EstimationTools/inst/doc/Examples.Rmd | 2 EstimationTools-4.0.0/EstimationTools/inst/doc/Examples.html | 356 +++++-- EstimationTools-4.0.0/EstimationTools/inst/refs.bib | 13 EstimationTools-4.0.0/EstimationTools/man/Fibers.Rd | 10 EstimationTools-4.0.0/EstimationTools/man/Hazard_Shape.Rd | 6 EstimationTools-4.0.0/EstimationTools/man/TTTE_Analytical.Rd | 4 EstimationTools-4.0.0/EstimationTools/man/TTT_hazard_shape.Rd | 68 + EstimationTools-4.0.0/EstimationTools/man/bootstrap_maxlogL.Rd | 2 EstimationTools-4.0.0/EstimationTools/man/coef.maxlogL.Rd |only EstimationTools-4.0.0/EstimationTools/man/figures |only EstimationTools-4.0.0/EstimationTools/man/gauss_quad.Rd |only EstimationTools-4.0.0/EstimationTools/man/half_norm_key.Rd |only EstimationTools-4.0.0/EstimationTools/man/hazard_fun.Rd |only EstimationTools-4.0.0/EstimationTools/man/hazard_rate_key.Rd |only EstimationTools-4.0.0/EstimationTools/man/integration.Rd |only EstimationTools-4.0.0/EstimationTools/man/internalfunc.Rd | 9 EstimationTools-4.0.0/EstimationTools/man/interp.options.Rd | 2 EstimationTools-4.0.0/EstimationTools/man/is.maxlogL.Rd | 2 EstimationTools-4.0.0/EstimationTools/man/legend.HazardShape.Rd |only EstimationTools-4.0.0/EstimationTools/man/loess.options.Rd | 2 EstimationTools-4.0.0/EstimationTools/man/logit_link.Rd | 5 EstimationTools-4.0.0/EstimationTools/man/maxlogL.Rd | 49 - EstimationTools-4.0.0/EstimationTools/man/maxlogLreg.Rd | 154 ++- EstimationTools-4.0.0/EstimationTools/man/plot.EmpiricalTTT.Rd | 2 EstimationTools-4.0.0/EstimationTools/man/plot.HazardShape.Rd | 91 - EstimationTools-4.0.0/EstimationTools/man/predict.maxlogL.Rd | 23 EstimationTools-4.0.0/EstimationTools/man/print.HazardShape.Rd |only EstimationTools-4.0.0/EstimationTools/man/reduction_cells.Rd |only EstimationTools-4.0.0/EstimationTools/man/residuals.maxlogL.Rd |only EstimationTools-4.0.0/EstimationTools/man/summary.maxlogL.Rd | 2 EstimationTools-4.0.0/EstimationTools/man/summate.Rd |only EstimationTools-4.0.0/EstimationTools/man/uniform_key.Rd |only EstimationTools-4.0.0/EstimationTools/tests/figs/ttt-for-hazard.svg | 13 EstimationTools-4.0.0/EstimationTools/tests/figs/ttt-hazardshape/ttt-for-hazard.svg | 13 EstimationTools-4.0.0/EstimationTools/tests/figs/tttplot/ttt-for-hazard.svg |only EstimationTools-4.0.0/EstimationTools/tests/testthat/_snaps/HazardShape_print.md |only EstimationTools-4.0.0/EstimationTools/tests/testthat/_snaps/TTT_HazardShape_EmpiricalTTT.md |only EstimationTools-4.0.0/EstimationTools/tests/testthat/_snaps/maxlogL_DEoptim.md |only EstimationTools-4.0.0/EstimationTools/tests/testthat/_snaps/maxlogL_ga.md |only EstimationTools-4.0.0/EstimationTools/tests/testthat/_snaps/maxlogL_nlminb.md |only EstimationTools-4.0.0/EstimationTools/tests/testthat/_snaps/maxlogL_optim.md |only EstimationTools-4.0.0/EstimationTools/tests/testthat/test-HazardShape_print.R |only EstimationTools-4.0.0/EstimationTools/tests/testthat/test-Hazard_Shape.R | 2 EstimationTools-4.0.0/EstimationTools/tests/testthat/test-TTT_HazardShape_EmpiricalTTT.R |only EstimationTools-4.0.0/EstimationTools/tests/testthat/test-coef.R |only EstimationTools-4.0.0/EstimationTools/tests/testthat/test-coefMany.R |only EstimationTools-4.0.0/EstimationTools/tests/testthat/test-coefMany_maxlogL.R |only EstimationTools-4.0.0/EstimationTools/tests/testthat/test-coefMany_oneparam.R |only EstimationTools-4.0.0/EstimationTools/tests/testthat/test-coef_maxlogL.R |only EstimationTools-4.0.0/EstimationTools/tests/testthat/test-maxlogL_DEoptim.R |only EstimationTools-4.0.0/EstimationTools/tests/testthat/test-maxlogL_ga.R |only EstimationTools-4.0.0/EstimationTools/tests/testthat/test-maxlogL_nlminb.R |only EstimationTools-4.0.0/EstimationTools/tests/testthat/test-maxlogL_optim.R |only EstimationTools-4.0.0/EstimationTools/vignettes/Bootstrap_implementation.Rmd | 10 EstimationTools-4.0.0/EstimationTools/vignettes/Examples.Rmd | 2 120 files changed, 1965 insertions(+), 784 deletions(-)
More information about EstimationTools at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-27 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-28 2.0-3