Title: Computes the Variance-Covariance Matrix of Multidimensional
Parameters Using M-Estimation
Description: Provides a flexible framework for estimating the variance-covariance matrix of estimated parameters. Estimation relies on unbiased estimating functions to compute the empirical sandwich variance. (i.e., M-estimation in the vein of Tsiatis et al. (2019) <doi:10.1201/9780429192692>.
Author: Francois Grolleau
Maintainer: Francois Grolleau <francois.grolleau@aphp.fr>
Diff between Mestim versions 0.1.0 dated 2022-12-06 and 0.2.0 dated 2022-12-18
DESCRIPTION | 14 ++++++++------ MD5 | 15 ++++++++++----- NEWS.md | 6 ++++++ R/get_vcov.R | 52 +++++++++++++++++++++++++--------------------------- README.md | 42 ++++++++++++++++++++++++++++-------------- build/vignette.rds |only inst |only man/doc.Rd | 37 +++++++++++++++++++++---------------- vignettes |only 9 files changed, 98 insertions(+), 68 deletions(-)
Title: An Image Processing Toolkit
Description: Incorporates functions for image preprocessing, filtering and image recognition. The package takes advantage of 'RcppArmadillo' to speed up computationally intensive functions. The histogram of oriented gradients descriptor is a modification of the 'findHOGFeatures' function of the 'SimpleCV' computer vision platform, the average_hash(), dhash() and phash() functions are based on the 'ImageHash' python library. The Gabor Feature Extraction functions are based on 'Matlab' code of the paper, "CloudID: Trustworthy cloud-based and cross-enterprise biometric identification" by M. Haghighat, S. Zonouz, M. Abdel-Mottaleb, Expert Systems with Applications, vol. 42, no. 21, pp. 7905-7916, 2015, <doi:10.1016/j.eswa.2015.06.025>. The 'SLIC' and 'SLICO' superpixel algorithms were explained in detail in (i) "SLIC Superpixels Compared to State-of-the-art Superpixel Methods", Radhakrishna Achanta, Appu Shaji, Kevin Smith, Aurelien Lucchi, Pascal Fua, and Sabine Suesstrunk, IEEE Transactions on [...truncated...]
Author: Lampros Mouselimis [aut, cre] ,
Sight Machine [cph] ,
Johannes Buchner [cph] ,
Mohammad Haghighat [cph] ,
Radhakrishna Achanta [cph] ),
Oleh Onyshchak [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between OpenImageR versions 1.2.7 dated 2022-10-28 and 1.2.8 dated 2022-12-18
DESCRIPTION | 12 +- MD5 | 25 +++--- NAMESPACE | 2 NEWS.md | 5 + R/read_image.R | 65 ++++++++++++---- README.md | 2 build/vignette.rds |binary inst/doc/Gabor_Feature_Extraction.html | 4 inst/doc/Image_segmentation_superpixels_clustering.html | 4 inst/doc/The_OpenImageR_package.html | 18 ++-- inst/doc/Warp_Affine.html | 6 - man/readImage.Rd | 2 man/verify_image_extension.Rd |only tests/testthat/test-read_image.R | 64 ++++++++++----- 14 files changed, 137 insertions(+), 72 deletions(-)
Title: Image Processing Library Based on 'CImg'
Description: Fast image processing for images in up to 4 dimensions (two spatial
dimensions, one time/depth dimension, one colour dimension). Provides most
traditional image processing tools (filtering, morphology, transformations,
etc.) as well as various functions for easily analysing image data using R. The
package wraps 'CImg', <http://cimg.eu>, a simple, modern C++ library for image
processing.
Author: Simon Barthelme [aut],
David Tschumperle [ctb],
Jan Wijffels [ctb],
Haz Edine Assemlal [ctb],
Shota Ochi [cre]
Maintainer: Shota Ochi <shotaochi1990@gmail.com>
Diff between imager versions 0.42.14 dated 2022-12-16 and 0.42.15 dated 2022-12-18
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- inst/doc/gettingstarted.html | 6 +++--- inst/doc/pixsets.html | 4 ++-- inst/include/CImg.h | 5 +---- 5 files changed, 13 insertions(+), 16 deletions(-)
Title: Generation of Different Animated Christmas Cards
Description: Generation of different Christmas cards, most of them being
animated. Most of the cards can be generated in three languages (English,
Catalan and Spanish). The collection started in 2009.
Author: Jose Barrera-Gomez [aut, cre]
Maintainer: Jose Barrera-Gomez <jose.barrera@isglobal.org>
Diff between christmas versions 1.1.1 dated 2022-01-11 and 1.2.0 dated 2022-12-18
christmas-1.1.1/christmas/R/xmasneon2014.R |only christmas-1.1.1/christmas/man/xmasneon2014.Rd |only christmas-1.2.0/christmas/DESCRIPTION | 18 ++++--- christmas-1.2.0/christmas/MD5 | 59 ++++++++++++------------ christmas-1.2.0/christmas/NAMESPACE | 4 + christmas-1.2.0/christmas/NEWS | 8 +++ christmas-1.2.0/christmas/R/auxiliarFunctions.R | 28 +++++++++++ christmas-1.2.0/christmas/R/onAttach.R |only christmas-1.2.0/christmas/R/xmascaganer.R | 2 christmas-1.2.0/christmas/R/xmasepitree.R | 12 ++-- christmas-1.2.0/christmas/R/xmasflag.R | 13 ++--- christmas-1.2.0/christmas/R/xmasgalton.R | 3 - christmas-1.2.0/christmas/R/xmashealth.R | 1 christmas-1.2.0/christmas/R/xmasneon.R |only christmas-1.2.0/christmas/R/xmaspicasso.R |only christmas-1.2.0/christmas/R/xmasregression.R | 4 - christmas-1.2.0/christmas/R/xmassnowkoch.R | 4 - christmas-1.2.0/christmas/R/xmassnowman.R | 6 -- christmas-1.2.0/christmas/R/xmastext.R | 5 -- christmas-1.2.0/christmas/R/xmastree.R | 17 +++--- christmas-1.2.0/christmas/R/xmastreeshape.R | 8 +-- christmas-1.2.0/christmas/R/xmastreewire.R | 4 - christmas-1.2.0/christmas/README.md | 1 christmas-1.2.0/christmas/man/xmasepitree.Rd | 1 christmas-1.2.0/christmas/man/xmasflag.Rd | 2 christmas-1.2.0/christmas/man/xmasgalton.Rd | 3 - christmas-1.2.0/christmas/man/xmasneon.Rd |only christmas-1.2.0/christmas/man/xmaspicasso.Rd |only christmas-1.2.0/christmas/man/xmasregression.Rd | 4 - christmas-1.2.0/christmas/man/xmassnowman.Rd | 4 - christmas-1.2.0/christmas/man/xmastext.Rd | 3 - christmas-1.2.0/christmas/man/xmastree.Rd | 4 - christmas-1.2.0/christmas/man/xmastreeshape.Rd | 2 christmas-1.2.0/christmas/man/xmastreewire.Rd | 4 - 34 files changed, 121 insertions(+), 103 deletions(-)
Title: Image Annotation and Polygon Outlining using Free Drawing
Description: Provides functions to create image annotations through polygon outlining. Annotator has the same function as 'graphics::locator()' but achieves its purpose through drawing, rather than multiple mouse clicks. It is based on the 'htmlwidgets' package and 'fabric.js' JavaScript library <http://fabricjs.com/>.
Author: Mihai Valcu [aut, cre]
Maintainer: Mihai Valcu <mvalcu@gwdg.de>
Diff between annotator versions 0.0.1 dated 2022-11-23 and 0.0.2 dated 2022-12-18
DESCRIPTION | 14 ++++++------- MD5 | 14 ++++++------- NAMESPACE | 7 ------ R/aaa.R | 5 +--- R/annotator.R | 17 ++++------------ README.md | 10 +++++++-- inst/htmlwidgets/fabric.js | 5 ++-- inst/htmlwidgets/lib/annotator.js | 39 +++++++++++++++++++++++++++++++------- 8 files changed, 65 insertions(+), 46 deletions(-)
Title: Access Databases from the Federal Statistical Office of Germany
Description: Retrieve and import data from different databases of the Federal Statistical Office of Germany (DESTATIS) using their SOAP XML web service <https://www-genesis.destatis.de/>.
Author: Moritz Marbach <m.marbach@ucl.ac.uk> [aut, cre]
Maintainer: Moritz Marbach <m.marbach@ucl.ac.uk>
Diff between wiesbaden versions 1.2.5 dated 2022-01-03 and 1.2.8 dated 2022-12-18
DESCRIPTION | 14 +-- MD5 | 28 +++--- NEWS.md | 10 ++ R/read_gv100.R | 8 + R/retrieve_data.R | 42 ++++++++- R/save_credentials.R | 8 + R/wiesbaden-package.R | 6 - build/vignette.rds |binary inst/doc/wiesbaden.R | 1 inst/doc/wiesbaden.Rmd | 6 + inst/doc/wiesbaden.html | 208 ++++++++++++++++++++++++++++------------------- man/read_gv100.Rd | 3 man/retrieve_data.Rd | 37 +++++++- man/wiesbaden-package.Rd | 4 vignettes/wiesbaden.Rmd | 6 + 15 files changed, 261 insertions(+), 120 deletions(-)
Title: A Tidy Tool for Phylogenetic Tree Data Manipulation
Description: Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.
Author: Guangchuang Yu [aut, cre, cph]
,
Bradley Jones [ctb],
Zebulun Arendsee [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between tidytree versions 0.4.1 dated 2022-09-26 and 0.4.2 dated 2022-12-18
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/left-join.R | 31 ++++++++++++++++++++----------- R/mutate.R | 6 ++++++ R/zzz.R | 2 +- build/vignette.rds |binary inst/doc/tidytree.html | 6 +++--- 9 files changed, 48 insertions(+), 28 deletions(-)
Title: Tools for Creating, Updating, and Analyzing Survey Replicate
Weights
Description: Provides tools for creating and working with survey replicate weights,
extending functionality of the 'survey' package from Lumley (2004) <doi:10.18637/jss.v009.i08>.
Methods are provided for applying nonresponse adjustments to
both full-sample and replicate weights as described by
Rust and Rao (1996) <doi:10.1177/096228029600500305>.
Implements methods for sample-based calibration described by Opsomer and Erciulescu (2021)
<https://www150.statcan.gc.ca/n1/pub/12-001-x/2021002/article/00006-eng.htm>.
Diagnostic functions are included to compare weights and weighted estimates
from different sets of replicate weights.
Author: Ben Schneider [aut, cre]
Maintainer: Ben Schneider <benjamin.julius.schneider@gmail.com>
Diff between svrep versions 0.4.0 dated 2022-12-11 and 0.4.1 dated 2022-12-18
DESCRIPTION | 6 MD5 | 16 +- NEWS.md | 12 + R/as_bootstrap_design.R | 3 R/make_bootstrap_weights.R | 229 +++++++++++++----------------- inst/doc/bootstrap-replicates.Rmd | 2 inst/doc/bootstrap-replicates.html | 9 - tests/testthat/test-as_bootstrap_design.R | 52 ++++++ vignettes/bootstrap-replicates.Rmd | 2 9 files changed, 184 insertions(+), 147 deletions(-)
Title: Moder-Free Sure Independent Screening Procedures
Description: An implementation of popular screening methods that are commonly
employed in ultra-high and high dimensional data. Through this publicly
available package, we provide a unified framework to carry out model-free
screening procedures including
SIS (Fan and Lv (2008) <doi:10.1111/j.1467-9868.2008.00674.x>),
SIRS(Zhu et al. (2011)<doi:10.1198/jasa.2011.tm10563>),
DC-SIS (Li et al. (2012) <doi:10.1080/01621459.2012.695654>),
MDC-SIS(Shao and Zhang (2014) <doi:10.1080/01621459.2014.887012>),
Bcor-SIS (Pan et al. (2019) <doi:10.1080/01621459.2018.1462709>),
PC-Screen (Liu et al. (2020) <doi:10.1080/01621459.2020.1783274>),
WLS (Zhong et al.(2021) <doi:10.1080/01621459.2021.1918554>),
Kfilter (Mai and Zou (2015) <doi:10.1214/14-AOS1303>),
MVSIS (Cui et al. (2015) <doi:10.1080/01621459.2014.920256>),
PSIS (Pan et al. (2016) <doi:10.1080/01621459.2014.998760>),
CAS (Xie et al. (2020) <doi:10.1080/01621459.2019.1573734>),
CI-SIS (C [...truncated...]
Author: Xuewei Cheng [aut, cre],
Hong Wang [aut],
Liping Zhu [aut],
Wei Zhong [aut],
Hanpu Zhou [aut]
Maintainer: Xuewei Cheng <xwcheng@csu.edu.cn>
Diff between MFSIS versions 0.1.3 dated 2022-04-20 and 0.2.0 dated 2022-12-18
DESCRIPTION | 29 ++++++++++++++++++++++------- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/CISIS.R | 3 +++ R/MFSIS.R | 3 ++- R/Simdata.R | 2 +- README.md | 5 ++++- man/CISIS.Rd | 3 +++ man/MFSIS.Rd | 3 ++- man/Simdata.Rd | 4 ++-- 10 files changed, 52 insertions(+), 22 deletions(-)
Title: Profiling Compliers and Non-Compliers for Instrumental Variable
Analysis
Description: Estimating the mean and variance of a covariate for the complier, never-taker and always-taker subpopulation in the context of instrumental variable estimation. This package implements the method described in Marbach and Hangartner (2020) <doi:10.1017/pan.2019.48> and Hangartner, Marbach, Henckel, Maathuis, Kelz and Keele (2021) <arXiv:2103.06328>.
Author: Moritz Marbach <m.marbach@ucl.ac.uk> [aut, cre]
Maintainer: Moritz Marbach <m.marbach@ucl.ac.uk>
Diff between ivdesc versions 1.1.0 dated 2021-03-20 and 1.1.1 dated 2022-12-18
DESCRIPTION | 13 ++++++------- MD5 | 4 ++-- NEWS.md | 4 ++++ 3 files changed, 12 insertions(+), 9 deletions(-)
Title: Download and Visualize Essential Climate Change Data
Description: Provides easy access to essential climate change datasets to non-climate experts. Users can download the latest raw data from authoritative sources and view it via pre-defined 'ggplot2' charts. Datasets include atmospheric CO2, methane, emissions, instrumental and proxy temperature records, sea levels, Arctic/Antarctic sea-ice, Hurricanes, and Paleoclimate data. Sources include: NOAA Mauna Loa Laboratory <https://gml.noaa.gov/ccgg/trends/data.html>, Global Carbon Project <https://www.globalcarbonproject.org/carbonbudget/>, NASA GISTEMP <https://data.giss.nasa.gov/gistemp/>, National Snow and Sea Ice Data Center <https://nsidc.org/home>, CSIRO <https://research.csiro.au/slrwavescoast/sea-level/measurements-and-data/sea-level-data/>, NOAA Laboratory for Satellite Altimetry <https://www.star.nesdis.noaa.gov/socd/lsa/SeaLevelRise/> and HURDAT Atlantic Hurricane Database <https://www.aoml.noaa.gov/hrd/hurdat/Data_Storm.html>, Vostok Paleo carbon dio [...truncated...]
Author: Hernando Cortina [aut, cre]
Maintainer: Hernando Cortina <hch@alum.mit.edu>
Diff between hockeystick versions 0.6.3 dated 2022-09-18 and 0.7.0 dated 2022-12-18
DESCRIPTION | 12 +-- MD5 | 50 +++++++----- NAMESPACE | 113 ++++++++++++++-------------- NEWS.md | 4 + R/2kyears_temp.R | 2 R/carbon.R | 4 - R/data_cache.R | 1 R/extra_viz.R | 52 +++++++++++++ R/globalvars.R | 3 R/methane.R |only R/paleo.R | 6 - README.md | 127 +++++++++++++++++++------------ build/partial.rdb |binary inst/WORDLIST | 8 ++ man/emissions_map.Rd |only man/figures/README-carbon-1.png |binary man/figures/README-emissions-1.png |binary man/figures/README-emissionsmap-1.png |only man/figures/README-grid-1.png |binary man/figures/README-icecurves-1.png |binary man/figures/README-methane-1.png |only man/figures/README-sl-1.png |binary man/figures/README-stripes-1.png |binary man/figures/README-stripes2-1.png |binary man/figures/README-temp-1.png |binary man/get_methane.Rd |only man/hockeystick-package.Rd | 2 man/plot_emissions.Rd | 136 +++++++++++++++++----------------- man/plot_methane.Rd |only 29 files changed, 312 insertions(+), 208 deletions(-)
Title: Generalised Joint Regression Modelling
Description: Routines for fitting various joint (and univariate) regression models, with several types of covariate effects, in the presence of equations' errors association, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <rosalba.radice@city.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between GJRM versions 0.2-6 dated 2022-04-01 and 0.2-6.1 dated 2022-12-18
ChangeLog | 5 DESCRIPTION | 8 - MD5 | 57 +++---- NAMESPACE | 6 R/CopulaCLM.r | 389 ++++++++++++++++++++++++++++++++++++++----------- R/H.triESS.r |only R/H.triSS.r |only R/PDef.R | 6 R/S.m.r | 46 +++-- R/bCopulaCLMgHsCont.R | 12 - R/bCopulaCLMgHsOrd.R |only R/bprobgHsCont3binTW.r |only R/edf.loop.r | 29 ++- R/form.check.r | 18 +- R/func.OPT.r | 13 - R/gjrm.r | 6 R/jc.probs.r | 88 ++++++++--- R/jc.probs7.r | 149 ++++++++++++------ R/jc.probs8.r |only R/plot.SemiParBIV.r | 39 +++- R/post.check.R | 4 R/pream.wm.r | 10 - R/pred.mvt.r | 116 ++++++++++++-- R/predict.CopulaCLM.r | 88 +++++++++-- R/pscr0.r | 8 - R/summary.SemiParBIV.r | 6 R/susu.r | 58 ++++--- R/susutsn.r | 38 +++- man/GJRM-package.Rd | 17 +- man/bprobgHsCont.Rd | 1 man/gjrm.Rd | 6 man/jc.probs.Rd | 1 32 files changed, 875 insertions(+), 349 deletions(-)
Title: Multivariate Conditional Volatility Modelling and Forecasting
Description: Methods and tools for estimating, simulating and forecasting of so-called BEKK-models (named after Baba, Engle, Kraft and Kroner) based on the fast Berndt–Hall–Hall–Hausman (BHHH) algorithm described in Hafner and Herwartz (2008) <doi:10.1007/s00184-007-0130-y>.
Author: Markus J. Fuelle [aut, cre],
Alexander Lange [aut],
Christian M. Hafner [aut],
Helmut Herwartz [aut]
Maintainer: Markus J. Fuelle <fuelle@uni-goettingen.de>
Diff between BEKKs versions 1.4.0 dated 2022-11-08 and 1.4.1 dated 2022-12-18
DESCRIPTION | 30 ++++++++-------- MD5 | 26 +++++++------- R/BEKKs.R | 22 ++++++------ R/VaR.R | 65 ++++++++++++++++++++++++++++++++---- R/backtest.R | 6 ++- R/bekk_fit.R | 24 ++++++------- R/bekk_forecast.R | 42 +++++++++++------------ R/bekk_functions.R | 12 +++--- R/matrix_stuff.R | 14 +++---- build/BEKKs.pdf |binary man/BEKKs.Rd | 23 ++++++------ man/figures/flow.png |binary tests/testthat/test-bekk_forecast.R | 64 +++++++++++++++++------------------ tests/testthat/test-virf.R | 6 +-- 14 files changed, 194 insertions(+), 140 deletions(-)
Title: Generate QRcodes with R
Description: Create QRcode in R.
Author: Thierry Onkelinx [aut, cre] ,
Victor Teh [aut]
Maintainer: Thierry Onkelinx <thierry.onkelinx@inbo.be>
Diff between qrcode versions 0.2.0 dated 2022-11-19 and 0.2.1 dated 2022-12-18
qrcode-0.2.0/qrcode/R/format_poly_gen.R |only qrcode-0.2.0/qrcode/R/polynomial_generator.R |only qrcode-0.2.0/qrcode/R/qr_init_matrix.R |only qrcode-0.2.0/qrcode/R/version_poly_gen.R |only qrcode-0.2.0/qrcode/man/qr_logo.Rd |only qrcode-0.2.1/qrcode/DESCRIPTION | 14 +- qrcode-0.2.1/qrcode/MD5 | 48 +++---- qrcode-0.2.1/qrcode/NAMESPACE | 7 - qrcode-0.2.1/qrcode/NEWS.md | 6 qrcode-0.2.1/qrcode/R/data_string_binary.R | 3 qrcode-0.2.1/qrcode/R/ec_generator.R | 2 qrcode-0.2.1/qrcode/R/generate_svg.R | 50 +++++++ qrcode-0.2.1/qrcode/R/plot.R | 39 +++++ qrcode-0.2.1/qrcode/R/qr_code.R | 1 qrcode-0.2.1/qrcode/R/qr_fill_up_matrix.R | 2 qrcode-0.2.1/qrcode/R/qr_interleave.R | 2 qrcode-0.2.1/qrcode/R/qr_logo.R | 133 +++++++++++++++----- qrcode-0.2.1/qrcode/R/qr_mask.R | 2 qrcode-0.2.1/qrcode/R/qr_version_info.R | 2 qrcode-0.2.1/qrcode/R/qrcode_gen.R | 2 qrcode-0.2.1/qrcode/R/validate_qr.R | 2 qrcode-0.2.1/qrcode/README.md | 6 qrcode-0.2.1/qrcode/inst/CITATION | 4 qrcode-0.2.1/qrcode/inst/prelease_checks.R |only qrcode-0.2.1/qrcode/man/add_logo.Rd |only qrcode-0.2.1/qrcode/man/defunct.Rd | 17 -- qrcode-0.2.1/qrcode/man/generate_svg.Rd | 11 + qrcode-0.2.1/qrcode/man/plot.qr_code.Rd | 10 + qrcode-0.2.1/qrcode/tests/testthat/test_e_qr_logo.R |only 29 files changed, 268 insertions(+), 95 deletions(-)
Title: Exploration of Multiple Biomarker Responses using Effect Size
Description: Summarize multiple biomarker responses of aquatic organisms to
contaminants using Cliff’s delta, as described in Pham & Sokolova (2022)
<doi:10.1002/ieam.4676>.
Author: Duy Nghia Pham [aut, cre] ,
Inna M. Sokolova [ths]
Maintainer: Duy Nghia Pham <nghiapham@yandex.com>
Diff between mbRes versions 0.1.5 dated 2022-09-24 and 0.1.6 dated 2022-12-18
DESCRIPTION | 14 +++++++------- MD5 | 18 +++++++++++------- NAMESPACE | 3 +++ R/mbRes-package.R | 15 +++++++++++---- R/mbr.cliff.R |only R/mbr.glass.R |only R/visual.R | 2 +- build/partial.rdb |binary inst/CITATION | 2 +- man/mbRes-package.Rd | 16 ++++++++++++---- man/mbr.cliff.Rd |only man/mbr.glass.Rd |only 12 files changed, 46 insertions(+), 24 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-25 0.6.8
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 0.4 dated 2022-12-05 and 0.4.1 dated 2022-12-18
DESCRIPTION | 9 MD5 | 89 ++--- NAMESPACE | 1 NEWS.md | 28 + R/baseXML.R | 65 +-- R/class-workbook-wrappers.R | 54 ++- R/class-workbook.R | 451 ++++++++++++++------------ R/class-worksheet.R | 28 - R/wb_functions.R | 23 - R/wb_load.R | 70 ++-- R/write.R | 2 build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/openxlsx2_charts_manual.R |only inst/doc/openxlsx2_charts_manual.Rmd |only inst/doc/openxlsx2_charts_manual.html |only man/wbWorkbook.Rd | 74 ++-- man/wb_add_chart_xml.Rd | 2 man/wb_add_chartsheet.Rd |only man/wb_add_data_table.Rd | 1 man/wb_add_drawing.Rd | 2 man/wb_add_formula.Rd | 1 man/wb_add_mschart.Rd | 10 man/wb_add_plot.Rd | 12 man/wb_add_worksheet.Rd | 1 man/wb_clone_worksheet.Rd | 1 man/wb_creators.Rd | 1 man/wb_data.Rd | 8 man/wb_freeze_pane.Rd | 1 man/wb_get_base_font.Rd | 1 man/wb_load.Rd | 9 man/wb_save.Rd | 1 man/wb_set_col_widths.Rd | 1 man/wb_set_last_modified_by.Rd | 1 man/wb_set_row_heights.Rd | 11 man/wb_workbook.Rd | 1 man/workbook_grouping.Rd | 1 man/write_data.Rd | 1 man/ws_cell_merge.Rd | 1 src/helper_functions.cpp | 2 src/load_workbook.cpp | 2 tests/testthat/test-class-workbook-wrappers.R | 6 tests/testthat/test-class-workbook.R | 109 ++++++ tests/testthat/test-freeze_pane.R | 21 + tests/testthat/test-loading_workbook.R | 35 +- tests/testthat/test-read_sources.R | 15 tests/testthat/test-strings_xml.R | 27 + vignettes/openxlsx2_charts_manual.Rmd |only 48 files changed, 787 insertions(+), 395 deletions(-)
Title: Likelihood-Based Intrinsic Dimension Estimators
Description: Provides functions to estimate the intrinsic dimension of a dataset
via likelihood-based approaches. Specifically, the package implements the
'TWO-NN' and 'Gride' estimators and the 'Hidalgo' Bayesian mixture model.
In addition, the first reference contains an extended vignette on the usage of
the 'TWO-NN' and 'Hidalgo' models. References:
Denti (2022+, <arXiv:2102.11425>);
Allegra et al. (2020, <doi:10.1038/s41598-020-72222-0>);
Denti et al. (2022, <doi:10.1038/s41598-022-20991-1>);
Facco et al. (2017, <doi:10.1038/s41598-017-11873-y>);
Santos-Fernandez et al. (2021, <doi:10.1038/s41598-022-20991-1>).
Author: Francesco Denti [aut, cre, cph]
,
Andrea Gilardi [aut]
Maintainer: Francesco Denti <francescodenti.personal@gmail.com>
Diff between intRinsic versions 0.2.1 dated 2022-05-31 and 0.2.2 dated 2022-12-18
intRinsic-0.2.1/intRinsic/R/hidalgo_aux.R |only intRinsic-0.2.1/intRinsic/R/twonn.R |only intRinsic-0.2.2/intRinsic/DESCRIPTION | 16 +- intRinsic-0.2.2/intRinsic/MD5 | 77 +++++----- intRinsic-0.2.2/intRinsic/NEWS.md | 10 + intRinsic-0.2.2/intRinsic/R/autoplot_gride.R | 12 - intRinsic-0.2.2/intRinsic/R/autoplot_hidalgo.R | 10 - intRinsic-0.2.2/intRinsic/R/autoplot_hidalgo_aux.R | 24 +-- intRinsic-0.2.2/intRinsic/R/autoplot_twonn.R | 5 intRinsic-0.2.2/intRinsic/R/compute_mus.R | 56 +++++-- intRinsic-0.2.2/intRinsic/R/gera_distribution.R | 11 - intRinsic-0.2.2/intRinsic/R/gride.R | 13 - intRinsic-0.2.2/intRinsic/R/gride_bayes.R | 9 - intRinsic-0.2.2/intRinsic/R/gride_evolution.R | 11 - intRinsic-0.2.2/intRinsic/R/gride_mle.R | 9 - intRinsic-0.2.2/intRinsic/R/gride_mle_aux.R | 2 intRinsic-0.2.2/intRinsic/R/hidalgo.R | 35 ++-- intRinsic-0.2.2/intRinsic/R/hidalgo_Aux.R |only intRinsic-0.2.2/intRinsic/R/hidalgo_postproc.R | 33 ++-- intRinsic-0.2.2/intRinsic/R/twoNN.R |only intRinsic-0.2.2/intRinsic/R/twonn_bayes.R | 9 - intRinsic-0.2.2/intRinsic/R/twonn_dec.R | 11 - intRinsic-0.2.2/intRinsic/R/twonn_dec_prop.R | 2 intRinsic-0.2.2/intRinsic/R/twonn_linfit.R | 4 intRinsic-0.2.2/intRinsic/R/twonn_mle.R | 13 - intRinsic-0.2.2/intRinsic/README.md | 16 +- intRinsic-0.2.2/intRinsic/build |only intRinsic-0.2.2/intRinsic/inst/CITATION | 2 intRinsic-0.2.2/intRinsic/man/Hidalgo.Rd | 14 - intRinsic-0.2.2/intRinsic/man/autoplot.Hidalgo.Rd | 10 - intRinsic-0.2.2/intRinsic/man/autoplot.gride_bayes.Rd | 8 - intRinsic-0.2.2/intRinsic/man/autoplot.gride_mle.Rd | 2 intRinsic-0.2.2/intRinsic/man/autoplot.twonn_mle.Rd | 2 intRinsic-0.2.2/intRinsic/man/auxHidalgo.Rd | 2 intRinsic-0.2.2/intRinsic/man/clustering.Rd | 19 +- intRinsic-0.2.2/intRinsic/man/compute_mus.Rd | 15 + intRinsic-0.2.2/intRinsic/man/generalized_ratios_distribution.Rd | 8 - intRinsic-0.2.2/intRinsic/man/gride.Rd | 13 - intRinsic-0.2.2/intRinsic/man/gride_evolution.Rd | 11 - intRinsic-0.2.2/intRinsic/man/intRinsic-package.Rd | 3 intRinsic-0.2.2/intRinsic/man/twonn.Rd | 21 +- intRinsic-0.2.2/intRinsic/man/twonn_decimated.Rd | 11 - 42 files changed, 312 insertions(+), 217 deletions(-)
Title: Euclidean Distance-Optimized Data Transformation
Description: A data transformation method which takes into account the special property of scale non-invariance with a breakpoint at 1 of the Euclidean distance.
Author: Jorn Lotsch[aut,cre], Alfred Ultsch[aut]
Maintainer: Jorn Lotsch <j.lotsch@em.uni-frankfurt.de>
Diff between EDOtrans versions 0.2.0 dated 2021-11-10 and 0.2.2 dated 2022-12-18
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NAMESPACE | 10 +++++----- R/EDOtrans.R | 2 +- inst |only man/EDOtrans.Rd | 18 +++++++++--------- 6 files changed, 23 insertions(+), 22 deletions(-)